Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020755.01.T01 | XP_013455974.2 | 86.553 | 409 | 4 | 1 | 1 | 358 | 118 | 526 | 0 | 707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020755.01.T01 | O82811 | 68.204 | 412 | 77 | 2 | 1 | 358 | 118 | 529 | 0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020755.01.T01 | G7IRD1 | 86.553 | 409 | 4 | 1 | 1 | 358 | 118 | 526 | 0.0 | 707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001797.01 | MsG0480020755.01 | 0.850717 | 1.417802e-60 | 2.802621e-57 |
| MsG0180001800.01 | MsG0480020755.01 | 0.836734 | 7.864688e-57 | 1.000008e-53 |
| MsG0180004424.01 | MsG0480020755.01 | 0.814382 | 1.585168e-51 | 1.062076e-48 |
| MsG0380011635.01 | MsG0480020755.01 | 0.822844 | 1.906001e-53 | 1.613886e-50 |
| MsG0380013212.01 | MsG0480020755.01 | 0.801244 | 9.867272e-49 | 4.689368e-46 |
| MsG0380013970.01 | MsG0480020755.01 | -0.802143 | 6.453463e-49 | 3.137475e-46 |
| MsG0380014022.01 | MsG0480020755.01 | -0.806214 | 9.168351e-50 | 4.948311e-47 |
| MsG0480019146.01 | MsG0480020755.01 | 0.822132 | 2.789983e-53 | 2.314907e-50 |
| MsG0480019346.01 | MsG0480020755.01 | 0.843144 | 1.678706e-58 | 2.601955e-55 |
| MsG0480019348.01 | MsG0480020755.01 | 0.835000 | 2.164221e-56 | 2.612072e-53 |
| MsG0480019842.01 | MsG0480020755.01 | 0.812257 | 4.643978e-51 | 2.938462e-48 |
| MsG0480020754.01 | MsG0480020755.01 | 0.920403 | 1.337512e-87 | 4.526695e-83 |
| MsG0480020755.01 | MsG0480021133.01 | 0.815413 | 9.364656e-52 | 6.451923e-49 |
| MsG0480020755.01 | MsG0480022300.01 | -0.805575 | 1.249557e-49 | 6.634012e-47 |
| MsG0480020755.01 | MsG0580024087.01 | 0.802571 | 5.267881e-49 | 2.589120e-46 |
| MsG0480020755.01 | MsG0580024464.01 | 0.823801 | 1.139089e-53 | 9.909835e-51 |
| MsG0480020755.01 | MsG0580024839.01 | 0.813385 | 2.628711e-51 | 1.714269e-48 |
| MsG0480020755.01 | MsG0580025965.01 | 0.836862 | 7.296947e-57 | 9.314071e-54 |
| MsG0480020755.01 | MsG0580027751.01 | 0.845175 | 4.783657e-59 | 7.904711e-56 |
| MsG0480020755.01 | MsG0580027752.01 | 0.872066 | 4.230875e-67 | 1.745815e-63 |
| MsG0480020755.01 | MsG0580027753.01 | 0.871312 | 7.520593e-67 | 3.020105e-63 |
| MsG0480020755.01 | MsG0580029937.01 | 0.809585 | 1.759501e-50 | 1.037150e-47 |
| MsG0480020755.01 | MsG0580029938.01 | 0.807185 | 5.719404e-50 | 3.164754e-47 |
| MsG0480020755.01 | MsG0680030379.01 | 0.802775 | 4.779375e-49 | 2.361507e-46 |
| MsG0480020755.01 | MsG0680030380.01 | 0.802953 | 4.391955e-49 | 2.179787e-46 |
| MsG0480020755.01 | MsG0680031009.01 | 0.810085 | 1.373555e-50 | 8.203029e-48 |
| MsG0480020755.01 | MsG0680034418.01 | 0.800101 | 1.688137e-48 | 7.793332e-46 |
| MsG0480020755.01 | MsG0680034974.01 | 0.819135 | 1.361157e-52 | 1.038638e-49 |
| MsG0480020755.01 | MsG0680034978.01 | 0.811493 | 6.810388e-51 | 4.221959e-48 |
| MsG0480020755.01 | MsG0780036199.01 | 0.817720 | 2.848738e-52 | 2.090738e-49 |
| MsG0480020755.01 | MsG0780036208.01 | 0.805438 | 1.334960e-49 | 7.062584e-47 |
| MsG0480020755.01 | MsG0780036376.01 | 0.801898 | 7.243770e-49 | 3.500012e-46 |
| MsG0480020755.01 | MsG0780036649.01 | 0.801207 | 1.003979e-48 | 4.766745e-46 |
| MsG0480020755.01 | MsG0780036839.01 | 0.807538 | 4.814050e-50 | 2.688289e-47 |
| MsG0480020755.01 | MsG0780036960.01 | 0.806809 | 6.866807e-50 | 3.762914e-47 |
| MsG0480020755.01 | MsG0780037436.01 | -0.802538 | 5.350738e-49 | 2.627727e-46 |
| MsG0480020755.01 | MsG0780038519.01 | 0.807917 | 3.999210e-50 | 2.255374e-47 |
| MsG0480020755.01 | MsG0780038963.01 | 0.809111 | 2.223350e-50 | 1.294084e-47 |
| MsG0480020755.01 | MsG0780039883.01 | 0.801626 | 8.238033e-49 | 3.952769e-46 |
| MsG0480020755.01 | MsG0780040498.01 | 0.815071 | 1.115351e-51 | 7.612600e-49 |
| MsG0480020755.01 | MsG0780040805.01 | 0.803237 | 3.836612e-49 | 1.918017e-46 |
| MsG0480020755.01 | MsG0780040806.01 | 0.803202 | 3.900592e-49 | 1.948296e-46 |
| MsG0480020755.01 | MsG0880045283.01 | -0.804477 | 2.120407e-49 | 1.094350e-46 |
| MsG0480020755.01 | MsG0880046038.01 | 0.830328 | 3.124272e-55 | 3.281193e-52 |
| MsG0480020755.01 | MsG0880047383.01 | 0.801929 | 7.140519e-49 | 3.452664e-46 |
| MsG0380015659.01 | MsG0480020755.01 | 0.842248 | 2.903496e-58 | 4.375997e-55 |
| MsG0380016299.01 | MsG0480020755.01 | 0.803745 | 3.010593e-49 | 1.524875e-46 |
| MsG0480018406.01 | MsG0480020755.01 | 0.814789 | 1.287999e-51 | 8.724670e-49 |
| MsG0280007869.01 | MsG0480020755.01 | 0.810972 | 8.835380e-51 | 5.402857e-48 |
| MsG0280007922.01 | MsG0480020755.01 | 0.800066 | 1.715392e-48 | 7.912390e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020755.01.T01 | MTR_4g057890 | 86.553 | 409 | 4 | 1 | 1 | 358 | 118 | 526 | 0.0 | 707 |
| MsG0480020755.01.T01 | MTR_4g057865 | 86.308 | 409 | 5 | 1 | 1 | 358 | 118 | 526 | 0.0 | 706 |
| MsG0480020755.01.T01 | MTR_8g069775 | 48.411 | 409 | 158 | 6 | 1 | 356 | 98 | 506 | 1.33e-115 | 345 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0480020755.01.T01 | AT1G08090 | 68.204 | 412 | 77 | 2 | 1 | 358 | 118 | 529 | 0.0 | 574 |
| MsG0480020755.01.T01 | AT5G60770 | 69.175 | 412 | 70 | 3 | 1 | 358 | 118 | 526 | 0.0 | 570 |
| MsG0480020755.01.T01 | AT5G60780 | 65.217 | 414 | 88 | 4 | 1 | 358 | 125 | 538 | 0.0 | 540 |
| MsG0480020755.01.T01 | AT1G08100 | 64.286 | 406 | 92 | 2 | 1 | 353 | 116 | 521 | 0.0 | 533 |
| MsG0480020755.01.T01 | AT3G45060 | 63.527 | 414 | 95 | 4 | 1 | 358 | 128 | 541 | 0.0 | 527 |
| MsG0480020755.01.T01 | AT1G12940 | 49.507 | 406 | 150 | 3 | 1 | 354 | 100 | 502 | 2.82e-133 | 390 |
| MsG0480020755.01.T01 | AT5G14570 | 42.268 | 388 | 161 | 3 | 1 | 325 | 95 | 482 | 2.61e-94 | 290 |
Find 85 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCTTTATGGTTACTCTA+TGG | 0.186150 | 4:-47675943 | MsG0480020755.01.T01:CDS |
| CATTTGTTTCATGCCAATAT+TGG | 0.240129 | 4:-47676387 | MsG0480020755.01.T01:CDS |
| AAGATTATTGGACTTGTTAA+TGG | 0.242547 | 4:-47676343 | MsG0480020755.01.T01:CDS |
| ATGTTTAATAGTAAGATTAT+TGG | 0.246388 | 4:-47676355 | MsG0480020755.01.T01:CDS |
| GGAATCATTGCTGCATCCTT+TGG | 0.291659 | 4:-47675634 | MsG0480020755.01.T01:CDS |
| CAACAGCTTCAGGTCTTTCA+TGG | 0.291908 | 4:-47675276 | MsG0480020755.01.T01:CDS |
| GTTTATGATTGGTTTCTCTT+TGG | 0.307610 | 4:-47676413 | MsG0480020755.01.T01:CDS |
| TAATGGTACTGCTGCTGGTT+GGG | 0.317688 | 4:-47676326 | MsG0480020755.01.T01:CDS |
| GATGTTGCAGCAAGATTATT+CGG | 0.318773 | 4:-47675568 | MsG0480020755.01.T01:CDS |
| GGAATAATATCAGGTTTAAC+TGG | 0.326492 | 4:-47675361 | MsG0480020755.01.T01:CDS |
| GGTTGCATCAGCCAAGTCTT+AGG | 0.340353 | 4:-47675108 | MsG0480020755.01.T01:CDS |
| TTCATATCAAGAAGATCTTT+AGG | 0.352927 | 4:-47675382 | MsG0480020755.01.T01:CDS |
| GGTGCAATTTGTGACCTATT+AGG | 0.354243 | 4:-47676532 | MsG0480020755.01.T01:CDS |
| TTCCAGCTGTGTGTAGCTTT+AGG | 0.354844 | 4:+47675653 | None:intergenic |
| TCATTTGTTGAAAATGCTTC+TGG | 0.358655 | 4:-47676451 | MsG0480020755.01.T01:CDS |
| ACATAGTACTCATCCAATAT+TGG | 0.362676 | 4:+47676374 | None:intergenic |
| CTTCTTTATGGTTACTCTAT+GGG | 0.368267 | 4:-47675942 | MsG0480020755.01.T01:CDS |
| AGATCTTTAGGAATAATATC+AGG | 0.377046 | 4:-47675370 | MsG0480020755.01.T01:CDS |
| CTTCTGGTTATATAGCAGTT+AGG | 0.379548 | 4:-47676435 | MsG0480020755.01.T01:CDS |
| GGTATGCTATAACAAATTAT+AGG | 0.383668 | 4:-47675980 | MsG0480020755.01.T01:CDS |
| TAGTGGGTAGGAGTTGTATT+TGG | 0.393817 | 4:+47675028 | None:intergenic |
| GCAGGTGGAAACTTTGGTTC+CGG | 0.404321 | 4:-47675337 | MsG0480020755.01.T01:CDS |
| AACCATAACGTGGACCTAAT+AGG | 0.411808 | 4:+47676518 | None:intergenic |
| GCTGCATGTGGTGCAACATT+TGG | 0.420104 | 4:-47675415 | MsG0480020755.01.T01:CDS |
| CCTTGGTGCTTTGCAGAAGA+AGG | 0.426831 | 4:-47676131 | MsG0480020755.01.T01:CDS |
| AACATAGTTGCTCGTCCATT+CGG | 0.426966 | 4:-47675604 | MsG0480020755.01.T01:CDS |
| ATAGCAGTTAGGTTTATGAT+TGG | 0.436014 | 4:-47676424 | MsG0480020755.01.T01:CDS |
| TGGATGGGTGCAATGATTGT+TGG | 0.437054 | 4:-47675256 | MsG0480020755.01.T01:CDS |
| AAAGATCTTCTTGATATGAA+TGG | 0.442192 | 4:+47675385 | None:intergenic |
| AAATATCAACTGTGTTAATC+CGG | 0.442980 | 4:+47675318 | None:intergenic |
| GACCTATTAGGTCCACGTTA+TGG | 0.448846 | 4:-47676520 | MsG0480020755.01.T01:CDS |
| AATGGTACTGCTGCTGGTTG+GGG | 0.451568 | 4:-47676325 | MsG0480020755.01.T01:intron |
| ACTGGTGCAGGTGGAAACTT+TGG | 0.451991 | 4:-47675343 | MsG0480020755.01.T01:CDS |
| TTGGTGCTGTTAGCATAATA+AGG | 0.455792 | 4:+47676488 | None:intergenic |
| GGAAAATGAACAAATGCAAC+AGG | 0.456403 | 4:+47675223 | None:intergenic |
| CTTGTTAATGGTACTGCTGC+TGG | 0.461616 | 4:-47676331 | MsG0480020755.01.T01:CDS |
| ATATGCAGAATACTCCTCCT+AGG | 0.462329 | 4:+47675506 | None:intergenic |
| AGAATACTCCTCCTAGGGTT+TGG | 0.463158 | 4:+47675512 | None:intergenic |
| AGCTTCAGGTCTTTCATGGA+TGG | 0.465615 | 4:-47675272 | MsG0480020755.01.T01:CDS |
| AACACTATTACACTTCTGAA+TGG | 0.470788 | 4:-47675153 | MsG0480020755.01.T01:CDS |
| GGAGTATTCTGCATATGGTT+AGG | 0.475643 | 4:-47675499 | MsG0480020755.01.T01:CDS |
| TAGGAGGAGTATTCTGCATA+TGG | 0.475901 | 4:-47675504 | MsG0480020755.01.T01:CDS |
| ATATCAGGTTTAACTGGTGC+AGG | 0.496822 | 4:-47675355 | MsG0480020755.01.T01:CDS |
| TTAATGGTACTGCTGCTGGT+TGG | 0.498414 | 4:-47676327 | MsG0480020755.01.T01:CDS |
| TTGCTGAGTATTTCTATGAC+AGG | 0.498846 | 4:-47675893 | MsG0480020755.01.T01:intron |
| CCATAGAGTAACCATAAAGA+AGG | 0.511401 | 4:+47675943 | None:intergenic |
| AACCTAAAGCTACACACAGC+TGG | 0.512286 | 4:-47675655 | MsG0480020755.01.T01:CDS |
| CTATAACAAATTATAGGACA+TGG | 0.524591 | 4:-47675974 | MsG0480020755.01.T01:CDS |
| ATGAAGATGAAGTACAGAAA+GGG | 0.525551 | 4:-47675129 | MsG0480020755.01.T01:CDS |
| AATGAAGATGAAGTACAGAA+AGG | 0.527504 | 4:-47675130 | MsG0480020755.01.T01:CDS |
| TCGGCATGCGAGGAAGGCTA+TGG | 0.535742 | 4:-47675549 | MsG0480020755.01.T01:CDS |
| GATTTACCTGATGGTAACCT+TGG | 0.538623 | 4:-47676148 | MsG0480020755.01.T01:CDS |
| TCCATGATCCTCTTCTCAGT+TGG | 0.543814 | 4:-47675445 | MsG0480020755.01.T01:CDS |
| GATTATTCGGCATGCGAGGA+AGG | 0.544135 | 4:-47675555 | MsG0480020755.01.T01:CDS |
| CATTGCTGCATCCTTTGGAA+TGG | 0.548449 | 4:-47675629 | MsG0480020755.01.T01:CDS |
| GCTTCAGGTCTTTCATGGAT+GGG | 0.552112 | 4:-47675271 | MsG0480020755.01.T01:CDS |
| CTTGTGCTCCAACTGAGAAG+AGG | 0.561854 | 4:+47675437 | None:intergenic |
| GGCATATAACTTGTACTAGT+GGG | 0.562820 | 4:+47675012 | None:intergenic |
| TGGGTAGGAGTTGTATTTGG+TGG | 0.563220 | 4:+47675031 | None:intergenic |
| AACTATGTTTGCCATTCCAA+AGG | 0.569835 | 4:+47675618 | None:intergenic |
| GAGGAAGGCTATGGACACTT+TGG | 0.574369 | 4:-47675540 | MsG0480020755.01.T01:CDS |
| CTTGGTGCTTTGCAGAAGAA+GGG | 0.574830 | 4:-47676130 | MsG0480020755.01.T01:CDS |
| AATGACATACAAAACACTGT+TGG | 0.582355 | 4:+47676469 | None:intergenic |
| TTCTCAGCAAACCTAAGACT+TGG | 0.583555 | 4:+47675097 | None:intergenic |
| TGGATCTTCCAAACCCTAGG+AGG | 0.586891 | 4:-47675520 | MsG0480020755.01.T01:CDS |
| TTAGGTCAAGATTTACCTGA+TGG | 0.587027 | 4:-47676157 | MsG0480020755.01.T01:intron |
| AAAGCACCAAGGTTACCATC+AGG | 0.588442 | 4:+47676142 | None:intergenic |
| CTTTGGATCTTCCAAACCCT+AGG | 0.590786 | 4:-47675523 | MsG0480020755.01.T01:CDS |
| GAGAATAGTCGTTCTGAGAG+AGG | 0.592972 | 4:-47675079 | MsG0480020755.01.T01:CDS |
| TATGCAGAATACTCCTCCTA+GGG | 0.594126 | 4:+47675507 | None:intergenic |
| CATAGAGTAACCATAAAGAA+GGG | 0.603391 | 4:+47675944 | None:intergenic |
| TCTGATGCATATCCGCCGAA+TGG | 0.605405 | 4:+47675589 | None:intergenic |
| TCAGGTTTAACTGGTGCAGG+TGG | 0.608725 | 4:-47675352 | MsG0480020755.01.T01:CDS |
| ATCATGGATAGTACTGCGAT+CGG | 0.609698 | 4:+47675460 | None:intergenic |
| ATAGTTGCTCGTCCATTCGG+CGG | 0.613192 | 4:-47675601 | MsG0480020755.01.T01:CDS |
| CCTTCTTCTGCAAAGCACCA+AGG | 0.613924 | 4:+47676131 | None:intergenic |
| TATAACTTGTACTAGTGGGT+AGG | 0.614728 | 4:+47675016 | None:intergenic |
| TCCAACTGAGAAGAGGATCA+TGG | 0.614752 | 4:+47675444 | None:intergenic |
| GCAAGATTATTCGGCATGCG+AGG | 0.636291 | 4:-47675559 | MsG0480020755.01.T01:CDS |
| CTCAGCAATGACATTGTCAG+TGG | 0.646298 | 4:+47675908 | None:intergenic |
| TGCTAAAGACAAGTTCACAA+AGG | 0.663793 | 4:-47676101 | MsG0480020755.01.T01:intron |
| TTCTGAGAGAGGTAAGCGTG+TGG | 0.670907 | 4:-47675068 | MsG0480020755.01.T01:CDS |
| GTTGGAGCACAAGCTGCATG+TGG | 0.687636 | 4:-47675427 | MsG0480020755.01.T01:CDS |
| AGGAAAGCACAACCATAACG+TGG | 0.709978 | 4:+47676508 | None:intergenic |
| AGGAACATGCTACCCCACTG+TGG | 0.730068 | 4:+47675202 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAAAGTATATTAAATAATT+TGG | - | Chr4:47675533-47675552 | MsG0480020755.01.T01:CDS | 10.0% |
| !! | ATGTTTAATAGTAAGATTAT+TGG | - | Chr4:47675207-47675226 | MsG0480020755.01.T01:CDS | 15.0% |
| !! | AAAAAATTGTGAGTCTAATT+CGG | + | Chr4:47675811-47675830 | None:intergenic | 20.0% |
| !! | CTAATAAATGGATATAAAAC+AGG | - | Chr4:47675881-47675900 | MsG0480020755.01.T01:intron | 20.0% |
| !! | TCTAACAAATCTCTAATAAA+TGG | - | Chr4:47675869-47675888 | MsG0480020755.01.T01:intron | 20.0% |
| !! | TGTAGATATATAAAATCTTG+AGG | + | Chr4:47675733-47675752 | None:intergenic | 20.0% |
| !!! | CACAATTTTTTTTAAAACCA+AGG | - | Chr4:47675820-47675839 | MsG0480020755.01.T01:intron | 20.0% |
| !!! | TGGTTATGATTTTTTTTTTC+AGG | - | Chr4:47675553-47675572 | MsG0480020755.01.T01:CDS | 20.0% |
| ! | AAAGATCTTCTTGATATGAA+TGG | + | Chr4:47676180-47676199 | None:intergenic | 25.0% |
| ! | AAATATCAACTGTGTTAATC+CGG | + | Chr4:47676247-47676266 | None:intergenic | 25.0% |
| ! | CTATAACAAATTATAGGACA+TGG | - | Chr4:47675588-47675607 | MsG0480020755.01.T01:CDS | 25.0% |
| ! | GGTATGCTATAACAAATTAT+AGG | - | Chr4:47675582-47675601 | MsG0480020755.01.T01:CDS | 25.0% |
| ! | TTCATATCAAGAAGATCTTT+AGG | - | Chr4:47676180-47676199 | MsG0480020755.01.T01:intron | 25.0% |
| !! | AGATCTTTAGGAATAATATC+AGG | - | Chr4:47676192-47676211 | MsG0480020755.01.T01:intron | 25.0% |
| !! | CGGATCATAATTTTAAATTG+TGG | + | Chr4:47675791-47675810 | None:intergenic | 25.0% |
| !!! | AAGATTATTGGACTTGTTAA+TGG | - | Chr4:47675219-47675238 | MsG0480020755.01.T01:CDS | 25.0% |
| !!! | ATTTTTTTTTTCAGGTGTTG+TGG | - | Chr4:47675561-47675580 | MsG0480020755.01.T01:CDS | 25.0% |
| AACACTATTACACTTCTGAA+TGG | - | Chr4:47676409-47676428 | MsG0480020755.01.T01:CDS | 30.0% | |
| AATGAAGATGAAGTACAGAA+AGG | - | Chr4:47676432-47676451 | MsG0480020755.01.T01:CDS | 30.0% | |
| AATGACATACAAAACACTGT+TGG | + | Chr4:47675096-47675115 | None:intergenic | 30.0% | |
| ACATAGTACTCATCCAATAT+TGG | + | Chr4:47675191-47675210 | None:intergenic | 30.0% | |
| ATAGCAGTTAGGTTTATGAT+TGG | - | Chr4:47675138-47675157 | MsG0480020755.01.T01:CDS | 30.0% | |
| ATGAAGATGAAGTACAGAAA+GGG | - | Chr4:47676433-47676452 | MsG0480020755.01.T01:CDS | 30.0% | |
| CATAGAGTAACCATAAAGAA+GGG | + | Chr4:47675621-47675640 | None:intergenic | 30.0% | |
| CATTTGTTTCATGCCAATAT+TGG | - | Chr4:47675175-47675194 | MsG0480020755.01.T01:CDS | 30.0% | |
| CTTCTTTATGGTTACTCTAT+GGG | - | Chr4:47675620-47675639 | MsG0480020755.01.T01:CDS | 30.0% | |
| GGAATAATATCAGGTTTAAC+TGG | - | Chr4:47676201-47676220 | MsG0480020755.01.T01:intron | 30.0% | |
| TTAATTTACAACTGCAGTTG+CGG | - | Chr4:47675764-47675783 | MsG0480020755.01.T01:intron | 30.0% | |
| ! | ATTTGTTCATTTTCCACAGT+GGG | - | Chr4:47676347-47676366 | MsG0480020755.01.T01:CDS | 30.0% |
| ! | TCAAAATTTTCAACAGCTTC+AGG | - | Chr4:47676276-47676295 | MsG0480020755.01.T01:intron | 30.0% |
| ! | TCATTTGTTGAAAATGCTTC+TGG | - | Chr4:47675111-47675130 | MsG0480020755.01.T01:CDS | 30.0% |
| ! | TCTTCATTGATCTCTTTTGA+AGG | + | Chr4:47676390-47676409 | None:intergenic | 30.0% |
| !! | GTTTATGATTGGTTTCTCTT+TGG | - | Chr4:47675149-47675168 | MsG0480020755.01.T01:CDS | 30.0% |
| !!! | GGTATTTTGGTCTTAACATT+AGG | - | Chr4:47675387-47675406 | MsG0480020755.01.T01:CDS | 30.0% |
| AACTATGTTTGCCATTCCAA+AGG | + | Chr4:47675947-47675966 | None:intergenic | 35.0% | |
| AATGTTCGTTACAATCTCCT+TGG | + | Chr4:47675840-47675859 | None:intergenic | 35.0% | |
| CCATAGAGTAACCATAAAGA+AGG | + | Chr4:47675622-47675641 | None:intergenic | 35.0% | |
| CCTTCTTTATGGTTACTCTA+TGG | - | Chr4:47675619-47675638 | MsG0480020755.01.T01:CDS | 35.0% | |
| CTAATCAACTCATACACCAA+AGG | + | Chr4:47675295-47675314 | None:intergenic | 35.0% | |
| GATGTTGCAGCAAGATTATT+CGG | - | Chr4:47675994-47676013 | MsG0480020755.01.T01:intron | 35.0% | |
| GGAAAATGAACAAATGCAAC+AGG | + | Chr4:47676342-47676361 | None:intergenic | 35.0% | |
| TGCTAAAGACAAGTTCACAA+AGG | - | Chr4:47675461-47675480 | MsG0480020755.01.T01:CDS | 35.0% | |
| TTAGGTCAAGATTTACCTGA+TGG | - | Chr4:47675405-47675424 | MsG0480020755.01.T01:CDS | 35.0% | |
| ! | AGTTCACAAAGGTTAGTTAC+TGG | - | Chr4:47675472-47675491 | MsG0480020755.01.T01:CDS | 35.0% |
| ! | CATTTGTTCATTTTCCACAG+TGG | - | Chr4:47676346-47676365 | MsG0480020755.01.T01:CDS | 35.0% |
| ! | CTTCTGGTTATATAGCAGTT+AGG | - | Chr4:47675127-47675146 | MsG0480020755.01.T01:CDS | 35.0% |
| ! | GCATGTTATCATGGGTATTT+TGG | - | Chr4:47675374-47675393 | MsG0480020755.01.T01:CDS | 35.0% |
| ! | TGGATTTTTGCCCTTCTTTA+TGG | - | Chr4:47675608-47675627 | MsG0480020755.01.T01:CDS | 35.0% |
| ! | TTGCTGAGTATTTCTATGAC+AGG | - | Chr4:47675669-47675688 | MsG0480020755.01.T01:intron | 35.0% |
| ! | TTTGTTCATTTTCCACAGTG+GGG | - | Chr4:47676348-47676367 | MsG0480020755.01.T01:CDS | 35.0% |
| !! | TATGAGTTGATTAGAAGAGC+TGG | - | Chr4:47675301-47675320 | MsG0480020755.01.T01:CDS | 35.0% |
| !! | TCATTGATCTCTTTTGAAGG+TGG | + | Chr4:47676387-47676406 | None:intergenic | 35.0% |
| !! | TTGGTGCTGTTAGCATAATA+AGG | + | Chr4:47675077-47675096 | None:intergenic | 35.0% |
| AACATAGTTGCTCGTCCATT+CGG | - | Chr4:47675958-47675977 | MsG0480020755.01.T01:CDS | 40.0% | |
| AACCATAACGTGGACCTAAT+AGG | + | Chr4:47675047-47675066 | None:intergenic | 40.0% | |
| ATATCAGGTTTAACTGGTGC+AGG | - | Chr4:47676207-47676226 | MsG0480020755.01.T01:intron | 40.0% | |
| ATATGCAGAATACTCCTCCT+AGG | + | Chr4:47676059-47676078 | None:intergenic | 40.0% | |
| ATCATGGATAGTACTGCGAT+CGG | + | Chr4:47676105-47676124 | None:intergenic | 40.0% | |
| ATGATAACATGCAACCAACC+AGG | + | Chr4:47675366-47675385 | None:intergenic | 40.0% | |
| GATTTACCTGATGGTAACCT+TGG | - | Chr4:47675414-47675433 | MsG0480020755.01.T01:CDS | 40.0% | |
| GGTGCAATTTGTGACCTATT+AGG | - | Chr4:47675030-47675049 | MsG0480020755.01.T01:CDS | 40.0% | |
| TATGCAGAATACTCCTCCTA+GGG | + | Chr4:47676058-47676077 | None:intergenic | 40.0% | |
| TGATAACATGCAACCAACCA+GGG | + | Chr4:47675365-47675384 | None:intergenic | 40.0% | |
| TTCTCAGCAAACCTAAGACT+TGG | + | Chr4:47676468-47676487 | None:intergenic | 40.0% | |
| ! | ATTGCCTTTTTATCCCTGGT+TGG | - | Chr4:47675349-47675368 | MsG0480020755.01.T01:CDS | 40.0% |
| ! | GAGAATTGCCTTTTTATCCC+TGG | - | Chr4:47675345-47675364 | MsG0480020755.01.T01:CDS | 40.0% |
| ! | GGAGTATTCTGCATATGGTT+AGG | - | Chr4:47676063-47676082 | MsG0480020755.01.T01:intron | 40.0% |
| ! | GGTTGGTTGCATGTTATCAT+GGG | - | Chr4:47675366-47675385 | MsG0480020755.01.T01:CDS | 40.0% |
| ! | TAGTGGGTAGGAGTTGTATT+TGG | + | Chr4:47676537-47676556 | None:intergenic | 40.0% |
| ! | TGGTTGGTTGCATGTTATCA+TGG | - | Chr4:47675365-47675384 | MsG0480020755.01.T01:CDS | 40.0% |
| !! | TAGGAGGAGTATTCTGCATA+TGG | - | Chr4:47676058-47676077 | MsG0480020755.01.T01:intron | 40.0% |
| !! | TGATCTCTTTTGAAGGTGGA+AGG | + | Chr4:47676383-47676402 | None:intergenic | 40.0% |
| AACCTAAAGCTACACACAGC+TGG | - | Chr4:47675907-47675926 | MsG0480020755.01.T01:CDS | 45.0% | |
| ACCAAAGGCAATAAGCTGAG+TGG | + | Chr4:47675280-47675299 | None:intergenic | 45.0% | |
| AGAATACTCCTCCTAGGGTT+TGG | + | Chr4:47676053-47676072 | None:intergenic | 45.0% | |
| AGCTTCAGGTCTTTCATGGA+TGG | - | Chr4:47676290-47676309 | MsG0480020755.01.T01:intron | 45.0% | |
| CAACAGCTTCAGGTCTTTCA+TGG | - | Chr4:47676286-47676305 | MsG0480020755.01.T01:intron | 45.0% | |
| CTCAGCAATGACATTGTCAG+TGG | + | Chr4:47675657-47675676 | None:intergenic | 45.0% | |
| CTTGTTAATGGTACTGCTGC+TGG | - | Chr4:47675231-47675250 | MsG0480020755.01.T01:CDS | 45.0% | |
| CTTTGGATCTTCCAAACCCT+AGG | - | Chr4:47676039-47676058 | MsG0480020755.01.T01:intron | 45.0% | |
| GACCTATTAGGTCCACGTTA+TGG | - | Chr4:47675042-47675061 | MsG0480020755.01.T01:CDS | 45.0% | |
| GCAACCAACCAGGGATAAAA+AGG | + | Chr4:47675356-47675375 | None:intergenic | 45.0% | |
| GCAATTCTCCAAGCAGTGAA+AGG | + | Chr4:47675334-47675353 | None:intergenic | 45.0% | |
| GCTTCAGGTCTTTCATGGAT+GGG | - | Chr4:47676291-47676310 | MsG0480020755.01.T01:intron | 45.0% | |
| GGAATCATTGCTGCATCCTT+TGG | - | Chr4:47675928-47675947 | MsG0480020755.01.T01:CDS | 45.0% | |
| TCCAACTGAGAAGAGGATCA+TGG | + | Chr4:47676121-47676140 | None:intergenic | 45.0% | |
| TCCATGATCCTCTTCTCAGT+TGG | - | Chr4:47676117-47676136 | MsG0480020755.01.T01:CDS | 45.0% | |
| TGGATGGGTGCAATGATTGT+TGG | - | Chr4:47676306-47676325 | MsG0480020755.01.T01:intron | 45.0% | |
| TGGGTAGGAGTTGTATTTGG+TGG | + | Chr4:47676534-47676553 | None:intergenic | 45.0% | |
| TTAATGGTACTGCTGCTGGT+TGG | - | Chr4:47675235-47675254 | MsG0480020755.01.T01:CDS | 45.0% | |
| TTCCAGCTGTGTGTAGCTTT+AGG | + | Chr4:47675912-47675931 | None:intergenic | 45.0% | |
| ! | AAAGCACCAAGGTTACCATC+AGG | + | Chr4:47675423-47675442 | None:intergenic | 45.0% |
| ! | AGGAAAGCACAACCATAACG+TGG | + | Chr4:47675057-47675076 | None:intergenic | 45.0% |
| ! | CATTGCTGCATCCTTTGGAA+TGG | - | Chr4:47675933-47675952 | MsG0480020755.01.T01:CDS | 45.0% |
| ! | TAATGGTACTGCTGCTGGTT+GGG | - | Chr4:47675236-47675255 | MsG0480020755.01.T01:CDS | 45.0% |
| !! | CTTGGTGCTTTGCAGAAGAA+GGG | - | Chr4:47675432-47675451 | MsG0480020755.01.T01:CDS | 45.0% |
| !! | GAGAATAGTCGTTCTGAGAG+AGG | - | Chr4:47676483-47676502 | MsG0480020755.01.T01:CDS | 45.0% |
| ACTGGTGCAGGTGGAAACTT+TGG | - | Chr4:47676219-47676238 | MsG0480020755.01.T01:intron | 50.0% | |
| ATAGTTGCTCGTCCATTCGG+CGG | - | Chr4:47675961-47675980 | MsG0480020755.01.T01:CDS | 50.0% | |
| CTTGTGCTCCAACTGAGAAG+AGG | + | Chr4:47676128-47676147 | None:intergenic | 50.0% | |
| GAGGAAGGCTATGGACACTT+TGG | - | Chr4:47676022-47676041 | MsG0480020755.01.T01:intron | 50.0% | |
| GATTATTCGGCATGCGAGGA+AGG | - | Chr4:47676007-47676026 | MsG0480020755.01.T01:intron | 50.0% | |
| GCAAGATTATTCGGCATGCG+AGG | - | Chr4:47676003-47676022 | MsG0480020755.01.T01:intron | 50.0% | |
| GCCACTCAGCTTATTGCCTT+TGG | - | Chr4:47675276-47675295 | MsG0480020755.01.T01:CDS | 50.0% | |
| GCTGCATGTGGTGCAACATT+TGG | - | Chr4:47676147-47676166 | MsG0480020755.01.T01:CDS | 50.0% | |
| GGTTGCATCAGCCAAGTCTT+AGG | - | Chr4:47676454-47676473 | MsG0480020755.01.T01:CDS | 50.0% | |
| GTTGGGGTAATATGGGTGGT+GGG | - | Chr4:47675253-47675272 | MsG0480020755.01.T01:CDS | 50.0% | |
| TCAGGTTTAACTGGTGCAGG+TGG | - | Chr4:47676210-47676229 | MsG0480020755.01.T01:intron | 50.0% | |
| TCTGATGCATATCCGCCGAA+TGG | + | Chr4:47675976-47675995 | None:intergenic | 50.0% | |
| TGGATCTTCCAAACCCTAGG+AGG | - | Chr4:47676042-47676061 | MsG0480020755.01.T01:intron | 50.0% | |
| TTGGGGTAATATGGGTGGTG+GGG | - | Chr4:47675254-47675273 | MsG0480020755.01.T01:CDS | 50.0% | |
| ! | AATGGTACTGCTGCTGGTTG+GGG | - | Chr4:47675237-47675256 | MsG0480020755.01.T01:CDS | 50.0% |
| ! | CCTTCTTCTGCAAAGCACCA+AGG | + | Chr4:47675434-47675453 | None:intergenic | 50.0% |
| ! | GCAGGTGGAAACTTTGGTTC+CGG | - | Chr4:47676225-47676244 | MsG0480020755.01.T01:intron | 50.0% |
| ! | GCTGCTGGTTGGGGTAATAT+GGG | - | Chr4:47675246-47675265 | MsG0480020755.01.T01:CDS | 50.0% |
| ! | GTGCTACTCCTTTCACTGCT+TGG | - | Chr4:47675323-47675342 | MsG0480020755.01.T01:CDS | 50.0% |
| ! | TGCTGCTGGTTGGGGTAATA+TGG | - | Chr4:47675245-47675264 | MsG0480020755.01.T01:CDS | 50.0% |
| ! | TTCTGAGAGAGGTAAGCGTG+TGG | - | Chr4:47676494-47676513 | MsG0480020755.01.T01:CDS | 50.0% |
| !! | CCTTGGTGCTTTGCAGAAGA+AGG | - | Chr4:47675431-47675450 | MsG0480020755.01.T01:CDS | 50.0% |
| AGGAACATGCTACCCCACTG+TGG | + | Chr4:47676363-47676382 | None:intergenic | 55.0% | |
| GCTGGTTGGGGTAATATGGG+TGG | - | Chr4:47675249-47675268 | MsG0480020755.01.T01:CDS | 55.0% | |
| GGTTGGGGTAATATGGGTGG+TGG | - | Chr4:47675252-47675271 | MsG0480020755.01.T01:CDS | 55.0% | |
| GTTGGAGCACAAGCTGCATG+TGG | - | Chr4:47676135-47676154 | MsG0480020755.01.T01:CDS | 55.0% | |
| TCGGCATGCGAGGAAGGCTA+TGG | - | Chr4:47676013-47676032 | MsG0480020755.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr4 | gene | 47675027 | 47676557 | 47675027 | ID=MsG0480020755.01;Name=MsG0480020755.01 |
| Chr4 | mRNA | 47675027 | 47676557 | 47675027 | ID=MsG0480020755.01.T01;Parent=MsG0480020755.01;Name=MsG0480020755.01.T01;_AED=0.35;_eAED=0.35;_QI=0|0|0|1|1|1|4|0|358 |
| Chr4 | exon | 47676326 | 47676557 | 47676326 | ID=MsG0480020755.01.T01:exon:8286;Parent=MsG0480020755.01.T01 |
| Chr4 | exon | 47676102 | 47676175 | 47676102 | ID=MsG0480020755.01.T01:exon:8285;Parent=MsG0480020755.01.T01 |
| Chr4 | exon | 47675894 | 47676009 | 47675894 | ID=MsG0480020755.01.T01:exon:8284;Parent=MsG0480020755.01.T01 |
| Chr4 | exon | 47675027 | 47675681 | 47675027 | ID=MsG0480020755.01.T01:exon:8283;Parent=MsG0480020755.01.T01 |
| Chr4 | CDS | 47676326 | 47676557 | 47676326 | ID=MsG0480020755.01.T01:cds;Parent=MsG0480020755.01.T01 |
| Chr4 | CDS | 47676102 | 47676175 | 47676102 | ID=MsG0480020755.01.T01:cds;Parent=MsG0480020755.01.T01 |
| Chr4 | CDS | 47675894 | 47676009 | 47675894 | ID=MsG0480020755.01.T01:cds;Parent=MsG0480020755.01.T01 |
| Chr4 | CDS | 47675027 | 47675681 | 47675027 | ID=MsG0480020755.01.T01:cds;Parent=MsG0480020755.01.T01 |
| Gene Sequence |
| Protein sequence |
