AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780039449.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039449.01.T01 MTR_7g073990 97.143 245 4 1 1 242 1 245 1.67e-176 484
MsG0780039449.01.T01 MTR_1g018030 44.295 149 72 3 94 239 44 184 1.52e-31 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780039449.01.T01 AT1G32070 66.957 230 62 4 25 241 28 256 3.62e-104 302
MsG0780039449.01.T01 AT1G32070 66.234 231 63 4 25 241 27 256 4.19e-103 300
MsG0780039449.01.T01 AT1G32070 66.234 231 63 4 25 241 28 257 4.34e-103 300
MsG0780039449.01.T01 AT1G26220 41.353 133 67 2 108 239 67 189 3.10e-27 103

Find 79 sgRNAs with CRISPR-Local

Find 235 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAACTTCCTTATCAATT+TGG 0.118919 7:-64213374 None:intergenic
TCCCATGGTTTGGGCGATTA+TGG 0.159377 7:+64213713 MsG0780039449.01.T01:three_prime_UTR
GAGATTGAGGGTTAGCATTT+TGG 0.208945 7:-64210286 None:intergenic
ATGCCTTCAATGCCACAATT+TGG 0.217116 7:+64212112 MsG0780039449.01.T01:CDS
TTCAGCTCAAGGCTGGATTT+TGG 0.218238 7:+64210518 MsG0780039449.01.T01:CDS
CTGAAAAGTCCTCAACTTTC+TGG 0.221139 7:-64210500 None:intergenic
AATGAACAAAAGATATTAAT+TGG 0.255156 7:+64212066 MsG0780039449.01.T01:CDS
CCCATGGTTTGGGCGATTAT+GGG 0.266425 7:+64213714 MsG0780039449.01.T01:three_prime_UTR
GAGCAAATATTGTTCTCTTC+AGG 0.294940 7:+64211314 MsG0780039449.01.T01:CDS
GAAAACTTCCTTATCAATTT+GGG 0.297922 7:-64213373 None:intergenic
GCTGACCCAGAGGGCATAAA+AGG 0.303809 7:+64213338 MsG0780039449.01.T01:CDS
AACAGATAATGGTGAGGCTT+TGG 0.342077 7:+64213560 MsG0780039449.01.T01:three_prime_UTR
TGCCTTCAATGCCACAATTT+GGG 0.345095 7:+64212113 MsG0780039449.01.T01:CDS
CATCCTGTAATTACTGTGTT+AGG 0.361827 7:+64213492 MsG0780039449.01.T01:three_prime_UTR
ATACAATACAAGACAGTGTT+TGG 0.367260 7:+64210215 None:intergenic
TGAGCATTCATCCCATGGTT+TGG 0.372224 7:+64213703 MsG0780039449.01.T01:three_prime_UTR
ATGGGATGAATGCTCATTTC+AGG 0.376094 7:-64213696 None:intergenic
GAGCATTCATCCCATGGTTT+GGG 0.378208 7:+64213704 MsG0780039449.01.T01:three_prime_UTR
GCTGTAACGTTGTAAACTTC+AGG 0.387745 7:-64213429 None:intergenic
ATTCTATAGGGCCAAGGTCT+TGG 0.389671 7:+64213100 MsG0780039449.01.T01:intron
TACAAGACAGTGTTTGGTTT+GGG 0.390597 7:+64210221 MsG0780039449.01.T01:five_prime_UTR
CAACCTAACACAGTAATTAC+AGG 0.393879 7:-64213495 None:intergenic
GCAGCAGCTAATTTCGATAA+TGG 0.399700 7:-64211843 None:intergenic
AGAAAGAGAATTGAGATTGA+GGG 0.408983 7:-64210298 None:intergenic
AAGAAAGAGAATTGAGATTG+AGG 0.428030 7:-64210299 None:intergenic
ATTTGCTCAATTGTTCCATC+AGG 0.431467 7:-64211299 None:intergenic
AAAGGGTAATTAAGATTAGC+AGG 0.433746 7:-64210369 None:intergenic
TAGTATGAAAGTATAAAGAT+TGG 0.439306 7:+64213465 MsG0780039449.01.T01:three_prime_UTR
ATACAAGACAGTGTTTGGTT+TGG 0.443651 7:+64210220 MsG0780039449.01.T01:five_prime_UTR
AGGGCATAAAAGGCATGTTC+TGG 0.444015 7:+64213348 MsG0780039449.01.T01:CDS
ATCCCAAATTGTGGCATTGA+AGG 0.446021 7:-64212115 None:intergenic
TGCCAAAGTACCTGGTAGCC+TGG 0.451629 7:-64212150 None:intergenic
TCAGTGTGTAAGAGGAGTAT+AGG 0.457011 7:+64213661 MsG0780039449.01.T01:three_prime_UTR
TGAGTAAAGAGTGGATGAAA+GGG 0.463982 7:-64210330 None:intergenic
TTCTGGTACCCAAATTGATA+AGG 0.478814 7:+64213365 MsG0780039449.01.T01:exon
CCTAGTTGATCCAGGCTACC+AGG 0.486692 7:+64212140 MsG0780039449.01.T01:CDS
TTGAGTAAAGAGTGGATGAA+AGG 0.490999 7:-64210331 None:intergenic
ATAAGAAAGTCACCAGGGTC+AGG 0.499788 7:+64211903 MsG0780039449.01.T01:CDS
TGGGATGTCCTAGTTGATCC+AGG 0.505992 7:+64212132 MsG0780039449.01.T01:CDS
TTTGACCTGTATTAGCAAAA+GGG 0.511224 7:-64210386 None:intergenic
TTTGGGAGTCAATTAAATCT+GGG 0.516563 7:+64210536 MsG0780039449.01.T01:CDS
CCCATAATCGCCCAAACCAT+GGG 0.518854 7:-64213714 None:intergenic
TCTTCTTCTTCTGTTAACTC+CGG 0.520081 7:-64211230 None:intergenic
ACCCATAATCGCCCAAACCA+TGG 0.539178 7:-64213715 None:intergenic
TGGTTGTATCAGTGTGTAAG+AGG 0.540970 7:+64213653 MsG0780039449.01.T01:three_prime_UTR
CAAATATTGTTCTCTTCAGG+TGG 0.543956 7:+64211317 MsG0780039449.01.T01:CDS
CACCACACAGGTCATCGATC+CGG 0.544650 7:+64211211 MsG0780039449.01.T01:CDS
AAGACAGTGTTTGGTTTGGG+TGG 0.546659 7:+64210224 MsG0780039449.01.T01:five_prime_UTR
GATTTGATTCTATAGGGCCA+AGG 0.548964 7:+64213094 MsG0780039449.01.T01:intron
CAAGAGCTTTACCAAGACCT+TGG 0.549605 7:-64213111 None:intergenic
AGCACAAACTCTTGAGGTAG+AGG 0.550148 7:-64211260 None:intergenic
GTTTGTGCTTGTTGAAAAGA+CGG 0.552027 7:+64211274 MsG0780039449.01.T01:CDS
CCTGGTAGCCTGGATCAACT+AGG 0.553781 7:-64212140 None:intergenic
ACAAAAGATATTAATTGGCA+TGG 0.555166 7:+64212071 MsG0780039449.01.T01:CDS
TGAAATGAGCATTCATCCCA+TGG 0.559753 7:+64213698 MsG0780039449.01.T01:three_prime_UTR
AAATTGTGGCATTGAAGGCA+TGG 0.561363 7:-64212110 None:intergenic
AACTGAGTTTGAGTAAAGAG+TGG 0.562198 7:-64210339 None:intergenic
GGCATGGTCTGATGTAGCAC+GGG 0.584570 7:-64212094 None:intergenic
GGGTTTGAAGCTGACCCAGA+GGG 0.584967 7:+64213329 MsG0780039449.01.T01:CDS
GATACGCACCTTGTCACAGA+GGG 0.585718 7:-64211366 None:intergenic
TCAACAAGCACAAACTCTTG+AGG 0.586333 7:-64211266 None:intergenic
GTTGAAAAGACGGAACCTGA+TGG 0.591303 7:+64211284 MsG0780039449.01.T01:CDS
ACTTTGTTCGCAGATAGTAA+AGG 0.599684 7:+64213181 MsG0780039449.01.T01:CDS
TTTCAGCTACCAGAAAGTTG+AGG 0.601621 7:+64210491 MsG0780039449.01.T01:intron
AACTAGGACATCCCAAATTG+TGG 0.601622 7:-64212124 None:intergenic
TCTTCAAGCCCTCTGTGACA+AGG 0.604383 7:+64211358 MsG0780039449.01.T01:CDS
ATATTATTATTACCTGACCC+TGG 0.611994 7:-64211915 None:intergenic
AGGCATGGTCTGATGTAGCA+CGG 0.613503 7:-64212095 None:intergenic
TATTCTATAAGAAAGTCACC+AGG 0.624420 7:+64211897 MsG0780039449.01.T01:CDS
CATCTCTTTAACAGGTAGGG+TGG 0.637083 7:+64211811 MsG0780039449.01.T01:intron
AACAGGTAGGGTGGCCTCGT+AGG 0.640562 7:+64211820 MsG0780039449.01.T01:intron
AAAGAAGTAGAAAATAACAC+TGG 0.648497 7:-64213591 None:intergenic
AATTTCGATAATGGCCTACG+AGG 0.672834 7:-64211834 None:intergenic
AGGGTTTGAAGCTGACCCAG+AGG 0.695850 7:+64213328 MsG0780039449.01.T01:CDS
ATTCTATAAGAAAGTCACCA+GGG 0.724149 7:+64211898 MsG0780039449.01.T01:CDS
GATGAAGAATAACACCACAC+AGG 0.731975 7:+64211199 MsG0780039449.01.T01:CDS
CTCCGGATCGATGACCTGTG+TGG 0.735613 7:-64211213 None:intergenic
AGATACGCACCTTGTCACAG+AGG 0.742856 7:-64211367 None:intergenic
CTTTCTTATAGAATACAGAG+AGG 0.746297 7:-64211889 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATTAAATAGAATTCAAA+GGG + Chr7:64210587-64210606 MsG0780039449.01.T01:intron 10.0%
!! AAATTAAATAGAATTCAAAG+GGG + Chr7:64210588-64210607 MsG0780039449.01.T01:intron 15.0%
!! AATATAGATACAAAAATGAA+AGG - Chr7:64211557-64211576 None:intergenic 15.0%
!! AATGAACAAAAGATATTAAT+TGG + Chr7:64212066-64212085 MsG0780039449.01.T01:CDS 15.0%
!! CATAAAAGATAAAAGTAATT+TGG - Chr7:64212993-64213012 None:intergenic 15.0%
!! GAAAATTAAATAGAATTCAA+AGG + Chr7:64210586-64210605 MsG0780039449.01.T01:intron 15.0%
!! TGAAAAAGTAATAAAACTTT+GGG - Chr7:64213540-64213559 None:intergenic 15.0%
!! TTGAAAAAGTAATAAAACTT+TGG - Chr7:64213541-64213560 None:intergenic 15.0%
!! TTTAAATTAATATGACATCT+AGG - Chr7:64212508-64212527 None:intergenic 15.0%
!!! ATTCTATTTAATTTTCAGAA+TGG - Chr7:64210582-64210601 None:intergenic 15.0%
!!! GAACATAATCATATTTTTTT+GGG - Chr7:64210896-64210915 None:intergenic 15.0%
!!! TTTTAGTTTTTTATACGTAT+AGG + Chr7:64211039-64211058 MsG0780039449.01.T01:intron 15.0%
!! AAAAAGTAATAAAACTTTGG+GGG - Chr7:64213538-64213557 None:intergenic 20.0%
!! AAATTATTAAACTATACCGA+AGG - Chr7:64211663-64211682 None:intergenic 20.0%
!! ACAAATTTGAAAAACACATT+AGG + Chr7:64212944-64212963 MsG0780039449.01.T01:intron 20.0%
!! ATACACTAATAATCATAACA+TGG - Chr7:64211138-64211157 None:intergenic 20.0%
!! CTAAATTAGAAATGAATAGA+CGG + Chr7:64212299-64212318 MsG0780039449.01.T01:intron 20.0%
!! GAAAAAGTAATAAAACTTTG+GGG - Chr7:64213539-64213558 None:intergenic 20.0%
!! GGTTTATGTAAAATAGAAAT+TGG + Chr7:64213249-64213268 MsG0780039449.01.T01:intron 20.0%
!! TTGTATTCAAAATCTATGTT+TGG - Chr7:64212177-64212196 None:intergenic 20.0%
!! TTTAAATTAAACAAACCCAA+AGG - Chr7:64212467-64212486 None:intergenic 20.0%
!!! AAAAACACATTAGGTATTTT+TGG + Chr7:64212953-64212972 MsG0780039449.01.T01:intron 20.0%
!!! AATACGTTTTACATAAGTAT+TGG + Chr7:64212686-64212705 MsG0780039449.01.T01:intron 20.0%
!!! ATACGTTTTACATAAGTATT+GGG + Chr7:64212687-64212706 MsG0780039449.01.T01:intron 20.0%
!!! ATAGATTTTGAATACAAACT+CGG + Chr7:64212180-64212199 MsG0780039449.01.T01:intron 20.0%
!!! GGAACATAATCATATTTTTT+TGG - Chr7:64210897-64210916 None:intergenic 20.0%
!!! TAGTATGAAAGTATAAAGAT+TGG + Chr7:64213465-64213484 MsG0780039449.01.T01:three_prime_UTR 20.0%
!!! TTACTTTTTCAAACAGATAA+TGG + Chr7:64213549-64213568 MsG0780039449.01.T01:three_prime_UTR 20.0%
! AAAGAAGTAGAAAATAACAC+TGG - Chr7:64213594-64213613 None:intergenic 25.0%
! AAATAGTTCATCTCTTTAAC+AGG + Chr7:64211803-64211822 MsG0780039449.01.T01:intron 25.0%
! ACAAAAGATATTAATTGGCA+TGG + Chr7:64212071-64212090 MsG0780039449.01.T01:CDS 25.0%
! AGAAAACTTCCTTATCAATT+TGG - Chr7:64213377-64213396 None:intergenic 25.0%
! AGTCTTAGATTTCAACAATA+AGG - Chr7:64210918-64210937 None:intergenic 25.0%
! ATTACAATGTTAAACAACAC+AGG - Chr7:64211692-64211711 None:intergenic 25.0%
! ATTCAAACAGTTGTTGAAAT+GGG + Chr7:64212581-64212600 MsG0780039449.01.T01:intron 25.0%
! CACTAAGATATTCATCAAAT+AGG - Chr7:64212018-64212037 None:intergenic 25.0%
! CATTAAAAAAGTGAACCTTT+AGG - Chr7:64212385-64212404 None:intergenic 25.0%
! GAAAACTTCCTTATCAATTT+GGG - Chr7:64213376-64213395 None:intergenic 25.0%
! GAAGAAATAAGTTCTTAATG+TGG - Chr7:64211535-64211554 None:intergenic 25.0%
! TCCAGTATAAACATAGATTA+TGG + Chr7:64213037-64213056 MsG0780039449.01.T01:intron 25.0%
! TTGTGATTAAGTTAATTCGT+TGG + Chr7:64211954-64211973 MsG0780039449.01.T01:intron 25.0%
! TTTGAAAAATAGCTATATGG+TGG + Chr7:64211866-64211885 MsG0780039449.01.T01:CDS 25.0%
!! TAGATTTTGAATACAAACTC+GGG + Chr7:64212181-64212200 MsG0780039449.01.T01:intron 25.0%
!! TGGAATTTTATCGCAATTTA+GGG + Chr7:64213309-64213328 MsG0780039449.01.T01:CDS 25.0%
!! TTTAAAGTTTAAACCCACTT+GGG + Chr7:64210724-64210743 MsG0780039449.01.T01:intron 25.0%
!! TTTTTGTCATCTTGAATGTA+TGG + Chr7:64213633-64213652 MsG0780039449.01.T01:three_prime_UTR 25.0%
!!! ATAAGTATTGGGATTCATTT+AGG + Chr7:64212698-64212717 MsG0780039449.01.T01:intron 25.0%
!!! ATTAGGTATTTTTGGATTCA+GGG + Chr7:64212961-64212980 MsG0780039449.01.T01:intron 25.0%
!!! CTAAAGGTTCACTTTTTTAA+TGG + Chr7:64212383-64212402 MsG0780039449.01.T01:intron 25.0%
!!! GATGTTGATTTGATTCTATA+GGG + Chr7:64213088-64213107 MsG0780039449.01.T01:intron 25.0%
!!! TCACTTTTTTAATGGTTTCA+TGG + Chr7:64212391-64212410 MsG0780039449.01.T01:intron 25.0%
!!! TCTTGGCAATCTTTTTATTT+TGG - Chr7:64210945-64210964 None:intergenic 25.0%
!!! TGATGTTGATTTGATTCTAT+AGG + Chr7:64213087-64213106 MsG0780039449.01.T01:intron 25.0%
!!! TGCTTTGAAAAATAGCTATA+TGG + Chr7:64211863-64211882 MsG0780039449.01.T01:CDS 25.0%
AAAGGGTAATTAAGATTAGC+AGG - Chr7:64210372-64210391 None:intergenic 30.0%
AACTAGCATACACATAATCA+CGG - Chr7:64211438-64211457 None:intergenic 30.0%
AAGAAAGAGAATTGAGATTG+AGG - Chr7:64210302-64210321 None:intergenic 30.0%
ACAATTGTTAGCATGTAGAA+TGG + Chr7:64210654-64210673 MsG0780039449.01.T01:intron 30.0%
ACCAGAATGTAAGTAAAGTT+TGG - Chr7:64210838-64210857 None:intergenic 30.0%
ACTAAAAATTGTATCCCCAA+AGG - Chr7:64211026-64211045 None:intergenic 30.0%
AGAAAGAGAATTGAGATTGA+GGG - Chr7:64210301-64210320 None:intergenic 30.0%
ATATTATTATTACCTGACCC+TGG - Chr7:64211918-64211937 None:intergenic 30.0%
ATTCTATAAGAAAGTCACCA+GGG + Chr7:64211898-64211917 MsG0780039449.01.T01:CDS 30.0%
CTAAAAATTGTATCCCCAAA+GGG - Chr7:64211025-64211044 None:intergenic 30.0%
CTTTCTTATAGAATACAGAG+AGG - Chr7:64211892-64211911 None:intergenic 30.0%
GATGAACTATTTAGTAACCA+AGG - Chr7:64211795-64211814 None:intergenic 30.0%
GATGAATATCTTAGTGTACT+TGG + Chr7:64212022-64212041 MsG0780039449.01.T01:intron 30.0%
GATTAAGTTAATTCGTTGGA+TGG + Chr7:64211958-64211977 MsG0780039449.01.T01:intron 30.0%
GATTCAAACAGTTGTTGAAA+TGG + Chr7:64212580-64212599 MsG0780039449.01.T01:intron 30.0%
GCCATAATCTATGTTTATAC+TGG - Chr7:64213041-64213060 None:intergenic 30.0%
GGAATAATTAACTGCTTTAG+AGG + Chr7:64210675-64210694 MsG0780039449.01.T01:intron 30.0%
TATTATATGAAACTCGTCCT+TGG + Chr7:64211775-64211794 MsG0780039449.01.T01:intron 30.0%
TATTCTATAAGAAAGTCACC+AGG + Chr7:64211897-64211916 MsG0780039449.01.T01:CDS 30.0%
TGAGTTCTTAATGTTGCTAA+GGG - Chr7:64211607-64211626 None:intergenic 30.0%
TGTTAATCAACTTGCATGTA+TGG + Chr7:64210701-64210720 MsG0780039449.01.T01:intron 30.0%
TTATTCTTCATCAACCTGAA+AGG - Chr7:64211191-64211210 None:intergenic 30.0%
TTGAGTTCTTAATGTTGCTA+AGG - Chr7:64211608-64211627 None:intergenic 30.0%
TTTCTCACTCTATTCTTCAA+TGG + Chr7:64210419-64210438 MsG0780039449.01.T01:intron 30.0%
TTTGACCTGTATTAGCAAAA+GGG - Chr7:64210389-64210408 None:intergenic 30.0%
TTTGGGAGTCAATTAAATCT+GGG + Chr7:64210536-64210555 MsG0780039449.01.T01:CDS 30.0%
! AATTACCCTTTTGCTAATAC+AGG + Chr7:64210381-64210400 MsG0780039449.01.T01:CDS 30.0%
! AGTTCTAATGAGGAAATGAA+TGG - Chr7:64212788-64212807 None:intergenic 30.0%
! ATTTAACTTTCCCTAAGTGA+GGG - Chr7:64212894-64212913 None:intergenic 30.0%
! GTGGAATTTTATCGCAATTT+AGG + Chr7:64213308-64213327 MsG0780039449.01.T01:CDS 30.0%
! GTTTAAAGTTTAAACCCACT+TGG + Chr7:64210723-64210742 MsG0780039449.01.T01:intron 30.0%
! TTTGTATGGAAGTTCTAATG+AGG - Chr7:64212798-64212817 None:intergenic 30.0%
! TTTTAATGGTTTCATGGTTC+TGG + Chr7:64212397-64212416 MsG0780039449.01.T01:intron 30.0%
! TTTTGACCTGTATTAGCAAA+AGG - Chr7:64210390-64210409 None:intergenic 30.0%
!! AAAAGAACACTGCTTTTGTA+TGG - Chr7:64212812-64212831 None:intergenic 30.0%
!! TTTTCAAACAGATAATGGTG+AGG + Chr7:64213554-64213573 MsG0780039449.01.T01:three_prime_UTR 30.0%
!! TTTTGGGAGTCAATTAAATC+TGG + Chr7:64210535-64210554 MsG0780039449.01.T01:CDS 30.0%
!!! CAGTGTTCTTTTTTGTTTCA+AGG + Chr7:64212820-64212839 MsG0780039449.01.T01:intron 30.0%
!!! CATTAGGTATTTTTGGATTC+AGG + Chr7:64212960-64212979 MsG0780039449.01.T01:intron 30.0%
!!! TAGCATTTTGGAATGGAATT+TGG - Chr7:64210277-64210296 None:intergenic 30.0%
!!! TGGCAATCTTTTTATTTTGG+TGG - Chr7:64210942-64210961 None:intergenic 30.0%
AACTGAGTTTGAGTAAAGAG+TGG - Chr7:64210342-64210361 None:intergenic 35.0%
ACTTTGTTCGCAGATAGTAA+AGG + Chr7:64213181-64213200 MsG0780039449.01.T01:CDS 35.0%
AGTCTTAGATTTCAGCAACA+AGG - Chr7:64211086-64211105 None:intergenic 35.0%
AGTTCATCTCTTTAACAGGT+AGG + Chr7:64211807-64211826 MsG0780039449.01.T01:intron 35.0%
ATACAAGACAGTGTTTGGTT+TGG + Chr7:64210220-64210239 MsG0780039449.01.T01:five_prime_UTR 35.0%
ATTTGCTCAATTGTTCCATC+AGG - Chr7:64211302-64211321 None:intergenic 35.0%
CAAATATTGTTCTCTTCAGG+TGG + Chr7:64211317-64211336 MsG0780039449.01.T01:CDS 35.0%
CAACCTAACACAGTAATTAC+AGG - Chr7:64213498-64213517 None:intergenic 35.0%
CAAGACATTTGCTTTAGTAG+AGG + Chr7:64212422-64212441 MsG0780039449.01.T01:intron 35.0%
CAAGTAGAGTGGTTCAAAAA+GGG - Chr7:64212850-64212869 None:intergenic 35.0%
CATCCTGTAATTACTGTGTT+AGG + Chr7:64213492-64213511 MsG0780039449.01.T01:three_prime_UTR 35.0%
CTCTACTAAAGCAAATGTCT+TGG - Chr7:64212424-64212443 None:intergenic 35.0%
GAGCAAATATTGTTCTCTTC+AGG + Chr7:64211314-64211333 MsG0780039449.01.T01:CDS 35.0%
GCCAAACTTTACTTACATTC+TGG + Chr7:64210834-64210853 MsG0780039449.01.T01:intron 35.0%
GTGCACTCAATTCATATTTG+AGG + Chr7:64211496-64211515 MsG0780039449.01.T01:intron 35.0%
GTTCATCTCTTTAACAGGTA+GGG + Chr7:64211808-64211827 MsG0780039449.01.T01:intron 35.0%
TCAAGTAGAGTGGTTCAAAA+AGG - Chr7:64212851-64212870 None:intergenic 35.0%
TCATAAACCACATGTTGTCT+TGG - Chr7:64210962-64210981 None:intergenic 35.0%
TCTTCTTCTTCTGTTAACTC+CGG - Chr7:64211233-64211252 None:intergenic 35.0%
TGAAAGGAGAAACATGTCAA+GGG - Chr7:64211175-64211194 None:intergenic 35.0%
TGAGTAAAGAGTGGATGAAA+GGG - Chr7:64210333-64210352 None:intergenic 35.0%
TGGTGAAGTTATTTGACAGA+GGG + Chr7:64212042-64212061 MsG0780039449.01.T01:intron 35.0%
TTATACTGGAACAGAACACA+AGG - Chr7:64213027-64213046 None:intergenic 35.0%
TTCTGGTACCCAAATTGATA+AGG + Chr7:64213365-64213384 MsG0780039449.01.T01:exon 35.0%
TTGAATTTCATGCGCTTTCA+TGG + Chr7:64213228-64213247 MsG0780039449.01.T01:intron 35.0%
TTGAGTAAAGAGTGGATGAA+AGG - Chr7:64210334-64210353 None:intergenic 35.0%
TTGGTGAAGTTATTTGACAG+AGG + Chr7:64212041-64212060 MsG0780039449.01.T01:intron 35.0%
! CATTTAACTTTCCCTAAGTG+AGG - Chr7:64212895-64212914 None:intergenic 35.0%
! GTTTGTGCTTGTTGAAAAGA+CGG + Chr7:64211274-64211293 MsG0780039449.01.T01:CDS 35.0%
! TACAAGACAGTGTTTGGTTT+GGG + Chr7:64210221-64210240 MsG0780039449.01.T01:five_prime_UTR 35.0%
!! TCTTTTCCTTGTTTCCCTTT+GGG + Chr7:64211008-64211027 MsG0780039449.01.T01:intron 35.0%
!! TTGTATTTTGAATGCAGTCG+TGG + Chr7:64213289-64213308 MsG0780039449.01.T01:intron 35.0%
AAAGGCCATATGACATATGG+TGG - Chr7:64212449-64212468 None:intergenic 40.0%
AACTAGGACATCCCAAATTG+TGG - Chr7:64212127-64212146 None:intergenic 40.0%
AAGACTGCTGAGACAATATG+CGG + Chr7:64211100-64211119 MsG0780039449.01.T01:intron 40.0%
AAGATTGCCAAGACAACATG+TGG + Chr7:64210952-64210971 MsG0780039449.01.T01:intron 40.0%
ACCATATGTCATATGGCCTT+TGG + Chr7:64212448-64212467 MsG0780039449.01.T01:intron 40.0%
ATCCTCACAAGAGTTTCCTT+CGG + Chr7:64211644-64211663 MsG0780039449.01.T01:intron 40.0%
ATGCCTTCAATGCCACAATT+TGG + Chr7:64212112-64212131 MsG0780039449.01.T01:CDS 40.0%
ATGGGATGAATGCTCATTTC+AGG - Chr7:64213699-64213718 None:intergenic 40.0%
CCATATGTCATATGGCCTTT+GGG + Chr7:64212449-64212468 MsG0780039449.01.T01:intron 40.0%
CTAACGAACATCAAGTAGAG+TGG - Chr7:64212861-64212880 None:intergenic 40.0%
CTGAAAAGTCCTCAACTTTC+TGG - Chr7:64210503-64210522 None:intergenic 40.0%
CTGAAAGGAGAAACATGTCA+AGG - Chr7:64211176-64211195 None:intergenic 40.0%
CTTGACATGTTTCTCCTTTC+AGG + Chr7:64211174-64211193 MsG0780039449.01.T01:intron 40.0%
GATGAAGAATAACACCACAC+AGG + Chr7:64211199-64211218 MsG0780039449.01.T01:CDS 40.0%
GATTTGATTCTATAGGGCCA+AGG + Chr7:64213094-64213113 MsG0780039449.01.T01:intron 40.0%
GCAGCAGCTAATTTCGATAA+TGG - Chr7:64211846-64211865 None:intergenic 40.0%
GCTGTAACGTTGTAAACTTC+AGG - Chr7:64213432-64213451 None:intergenic 40.0%
GGTGAAGTTATTTGACAGAG+GGG + Chr7:64212043-64212062 MsG0780039449.01.T01:intron 40.0%
TCAACAAGCACAAACTCTTG+AGG - Chr7:64211269-64211288 None:intergenic 40.0%
TGAAATGAGCATTCATCCCA+TGG + Chr7:64213698-64213717 MsG0780039449.01.T01:three_prime_UTR 40.0%
TGCCTTCAATGCCACAATTT+GGG + Chr7:64212113-64212132 MsG0780039449.01.T01:CDS 40.0%
TGCTCTCATATGTAGCCTAA+AGG + Chr7:64212367-64212386 MsG0780039449.01.T01:intron 40.0%
TGGTTGTATCAGTGTGTAAG+AGG + Chr7:64213653-64213672 MsG0780039449.01.T01:three_prime_UTR 40.0%
TTGGCCAACTATTGTTCTCA+CGG - Chr7:64210819-64210838 None:intergenic 40.0%
TTTCAGCTACCAGAAAGTTG+AGG + Chr7:64210491-64210510 MsG0780039449.01.T01:intron 40.0%
! AAATTGTGGCATTGAAGGCA+TGG - Chr7:64212113-64212132 None:intergenic 40.0%
! AACAGATAATGGTGAGGCTT+TGG + Chr7:64213560-64213579 MsG0780039449.01.T01:three_prime_UTR 40.0%
! AATTTCGATAATGGCCTACG+AGG - Chr7:64211837-64211856 None:intergenic 40.0%
! ATCCCAAATTGTGGCATTGA+AGG - Chr7:64212118-64212137 None:intergenic 40.0%
! CATTCGAGCTCTTTTGCAAA+GGG + Chr7:64213144-64213163 MsG0780039449.01.T01:CDS 40.0%
! TCAGTGTGTAAGAGGAGTAT+AGG + Chr7:64213661-64213680 MsG0780039449.01.T01:three_prime_UTR 40.0%
! TCATTCGAGCTCTTTTGCAA+AGG + Chr7:64213143-64213162 MsG0780039449.01.T01:CDS 40.0%
!! CTCTTTTCCTTGTTTCCCTT+TGG + Chr7:64211007-64211026 MsG0780039449.01.T01:intron 40.0%
!! CTTTTCCTTGTTTCCCTTTG+GGG + Chr7:64211009-64211028 MsG0780039449.01.T01:intron 40.0%
!! GAGATTGAGGGTTAGCATTT+TGG - Chr7:64210289-64210308 None:intergenic 40.0%
!! GTGGTATTGACTTGGGAATT+GGG + Chr7:64210755-64210774 MsG0780039449.01.T01:intron 40.0%
!! TAGCTTGGTGGTATTGACTT+GGG + Chr7:64210748-64210767 MsG0780039449.01.T01:intron 40.0%
!! TGAGGGTTAGCATTTTGGAA+TGG - Chr7:64210284-64210303 None:intergenic 40.0%
!!! TTTTTTTGGGCTTAACCCTC+CGG - Chr7:64210883-64210902 None:intergenic 40.0%
AGCACAAACTCTTGAGGTAG+AGG - Chr7:64211263-64211282 None:intergenic 45.0%
ATAAGAAAGTCACCAGGGTC+AGG + Chr7:64211903-64211922 MsG0780039449.01.T01:CDS 45.0%
ATGAATTGAGTGCACGCACA+TGG - Chr7:64211491-64211510 None:intergenic 45.0%
ATTCTATAGGGCCAAGGTCT+TGG + Chr7:64213100-64213119 MsG0780039449.01.T01:intron 45.0%
CAAGAGCTTTACCAAGACCT+TGG - Chr7:64213114-64213133 None:intergenic 45.0%
CATCTCTTTAACAGGTAGGG+TGG + Chr7:64211811-64211830 MsG0780039449.01.T01:intron 45.0%
CCCAAAGGCCATATGACATA+TGG - Chr7:64212452-64212471 None:intergenic 45.0%
CTTACATTCTGGTCGAACTC+CGG + Chr7:64210845-64210864 MsG0780039449.01.T01:intron 45.0%
GAGCATTCATCCCATGGTTT+GGG + Chr7:64213704-64213723 MsG0780039449.01.T01:three_prime_UTR 45.0%
GAGGACCACCATATGTCATA+TGG + Chr7:64212441-64212460 MsG0780039449.01.T01:intron 45.0%
GTTGAAAAGACGGAACCTGA+TGG + Chr7:64211284-64211303 MsG0780039449.01.T01:CDS 45.0%
TACCGAAGGAAACTCTTGTG+AGG - Chr7:64211649-64211668 None:intergenic 45.0%
TACTGGAACAGAACACAAGG+AGG - Chr7:64213024-64213043 None:intergenic 45.0%
TAGAGTGGTTCAAAAAGGGC+TGG - Chr7:64212846-64212865 None:intergenic 45.0%
TCTCCCGTGAGAACAATAGT+TGG + Chr7:64210812-64210831 MsG0780039449.01.T01:intron 45.0%
TGAGCATTCATCCCATGGTT+TGG + Chr7:64213703-64213722 MsG0780039449.01.T01:three_prime_UTR 45.0%
TGGCCAACTATTGTTCTCAC+GGG - Chr7:64210818-64210837 None:intergenic 45.0%
TGTATCCCCAAAGGGAAACA+AGG - Chr7:64211017-64211036 None:intergenic 45.0%
TTGAACCTGAGACCTTGAGA+AGG - Chr7:64210789-64210808 None:intergenic 45.0%
! AACATGCCTTTTATGCCCTC+TGG - Chr7:64213347-64213366 None:intergenic 45.0%
! ACATGCCTTTTATGCCCTCT+GGG - Chr7:64213346-64213365 None:intergenic 45.0%
! AGGGCATAAAAGGCATGTTC+TGG + Chr7:64213348-64213367 MsG0780039449.01.T01:CDS 45.0%
! GCTCTTTTGCAAAGGGACAT+CGG + Chr7:64213151-64213170 MsG0780039449.01.T01:CDS 45.0%
! GTTGAGGACTTTTCAGCTCA+AGG + Chr7:64210507-64210526 MsG0780039449.01.T01:CDS 45.0%
! TCAGCTCAAGGCTGGATTTT+GGG + Chr7:64210519-64210538 MsG0780039449.01.T01:CDS 45.0%
! TGTTTGGTTGCCAAAGTACC+TGG - Chr7:64212161-64212180 None:intergenic 45.0%
! TTCAGCTCAAGGCTGGATTT+TGG + Chr7:64210518-64210537 MsG0780039449.01.T01:CDS 45.0%
!! AAGACAGTGTTTGGTTTGGG+TGG + Chr7:64210224-64210243 MsG0780039449.01.T01:five_prime_UTR 45.0%
!! CTAGCTTGGTGGTATTGACT+TGG + Chr7:64210747-64210766 MsG0780039449.01.T01:intron 45.0%
!! GGTGGTATTGACTTGGGAAT+TGG + Chr7:64210754-64210773 MsG0780039449.01.T01:intron 45.0%
ACCCATAATCGCCCAAACCA+TGG - Chr7:64213718-64213737 None:intergenic 50.0%
ACTTTCCCTAAGTGAGGGTG+TGG - Chr7:64212889-64212908 None:intergenic 50.0%
AGATACGCACCTTGTCACAG+AGG - Chr7:64211370-64211389 None:intergenic 50.0%
AGGCATGGTCTGATGTAGCA+CGG - Chr7:64212098-64212117 None:intergenic 50.0%
ATCCAGGCTACCAGGTACTT+TGG + Chr7:64212148-64212167 MsG0780039449.01.T01:intron 50.0%
CCCATAATCGCCCAAACCAT+GGG - Chr7:64213717-64213736 None:intergenic 50.0%
GATACGCACCTTGTCACAGA+GGG - Chr7:64211369-64211388 None:intergenic 50.0%
TCTTCAAGCCCTCTGTGACA+AGG + Chr7:64211358-64211377 MsG0780039449.01.T01:CDS 50.0%
TGGGATGTCCTAGTTGATCC+AGG + Chr7:64212132-64212151 MsG0780039449.01.T01:CDS 50.0%
! AGGACTTTTCAGCTCAAGGC+TGG + Chr7:64210511-64210530 MsG0780039449.01.T01:CDS 50.0%
! CCCATGGTTTGGGCGATTAT+GGG + Chr7:64213714-64213733 MsG0780039449.01.T01:three_prime_UTR 50.0%
! TCCCATGGTTTGGGCGATTA+TGG + Chr7:64213713-64213732 MsG0780039449.01.T01:three_prime_UTR 50.0%
!! TAAACCCACTTGGGCTAGCT+TGG + Chr7:64210733-64210752 MsG0780039449.01.T01:intron 50.0%
ACCACCAAGCTAGCCCAAGT+GGG - Chr7:64210740-64210759 None:intergenic 55.0%
ACTCCGGATTACCAGGGAAC+CGG + Chr7:64210861-64210880 MsG0780039449.01.T01:intron 55.0%
CACCACACAGGTCATCGATC+CGG + Chr7:64211211-64211230 MsG0780039449.01.T01:CDS 55.0%
CCTAGTTGATCCAGGCTACC+AGG + Chr7:64212140-64212159 MsG0780039449.01.T01:CDS 55.0%
CCTGGTAGCCTGGATCAACT+AGG - Chr7:64212143-64212162 None:intergenic 55.0%
GGCATGGTCTGATGTAGCAC+GGG - Chr7:64212097-64212116 None:intergenic 55.0%
GGTCGAACTCCGGATTACCA+GGG + Chr7:64210855-64210874 MsG0780039449.01.T01:intron 55.0%
GTGCTCCTTCTCAAGGTCTC+AGG + Chr7:64210781-64210800 MsG0780039449.01.T01:intron 55.0%
TACCACCAAGCTAGCCCAAG+TGG - Chr7:64210741-64210760 None:intergenic 55.0%
TGGTCGAACTCCGGATTACC+AGG + Chr7:64210854-64210873 MsG0780039449.01.T01:intron 55.0%
! AGGGTTTGAAGCTGACCCAG+AGG + Chr7:64213328-64213347 MsG0780039449.01.T01:CDS 55.0%
! GCTGACCCAGAGGGCATAAA+AGG + Chr7:64213338-64213357 MsG0780039449.01.T01:CDS 55.0%
! GGGTTTGAAGCTGACCCAGA+GGG + Chr7:64213329-64213348 MsG0780039449.01.T01:CDS 55.0%
! TGCCAAAGTACCTGGTAGCC+TGG - Chr7:64212153-64212172 None:intergenic 55.0%
! TGGGAGTGTGCTCCTTCTCA+AGG + Chr7:64210774-64210793 MsG0780039449.01.T01:intron 55.0%
! TTCCCTAAGTGAGGGTGTGG+CGG - Chr7:64212886-64212905 None:intergenic 55.0%
AACAGGTAGGGTGGCCTCGT+AGG + Chr7:64211820-64211839 MsG0780039449.01.T01:intron 60.0%
ACCCGCCACACCCTCACTTA+GGG + Chr7:64212881-64212900 MsG0780039449.01.T01:intron 60.0%
CCTCCGGTTCCCTGGTAATC+CGG - Chr7:64210867-64210886 None:intergenic 60.0%
CGGATTACCAGGGAACCGGA+GGG + Chr7:64210865-64210884 MsG0780039449.01.T01:intron 60.0%
CTCCGGATCGATGACCTGTG+TGG - Chr7:64211216-64211235 None:intergenic 60.0%
! TCCCTAAGTGAGGGTGTGGC+GGG - Chr7:64212885-64212904 None:intergenic 60.0%
!! ACCCACTTGGGCTAGCTTGG+TGG + Chr7:64210736-64210755 MsG0780039449.01.T01:intron 60.0%
CCGGATTACCAGGGAACCGG+AGG + Chr7:64210864-64210883 MsG0780039449.01.T01:intron 65.0%
GACCCGCCACACCCTCACTT+AGG + Chr7:64212880-64212899 MsG0780039449.01.T01:intron 65.0%
GGCTTAACCCTCCGGTTCCC+TGG - Chr7:64210875-64210894 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr7 gene 64210217 64213738 64210217 ID=MsG0780039449.01;Name=MsG0780039449.01
Chr7 mRNA 64210217 64213738 64210217 ID=MsG0780039449.01.T01;Parent=MsG0780039449.01;Name=MsG0780039449.01.T01;_AED=0.35;_eAED=0.35;_QI=74|1|1|1|1|1|7|356|242
Chr7 exon 64213306 64213738 64213306 ID=MsG0780039449.01.T01:exon:15811;Parent=MsG0780039449.01.T01
Chr7 exon 64213109 64213202 64213109 ID=MsG0780039449.01.T01:exon:15810;Parent=MsG0780039449.01.T01
Chr7 exon 64212061 64212161 64212061 ID=MsG0780039449.01.T01:exon:15809;Parent=MsG0780039449.01.T01
Chr7 exon 64211825 64211924 64211825 ID=MsG0780039449.01.T01:exon:15808;Parent=MsG0780039449.01.T01
Chr7 exon 64211196 64211379 64211196 ID=MsG0780039449.01.T01:exon:15807;Parent=MsG0780039449.01.T01
Chr7 exon 64210497 64210557 64210497 ID=MsG0780039449.01.T01:exon:15806;Parent=MsG0780039449.01.T01
Chr7 exon 64210217 64210402 64210217 ID=MsG0780039449.01.T01:exon:15805;Parent=MsG0780039449.01.T01
Chr7 five_prime_UTR 64210217 64210290 64210217 ID=MsG0780039449.01.T01:five_prime_utr;Parent=MsG0780039449.01.T01
Chr7 CDS 64210291 64210402 64210291 ID=MsG0780039449.01.T01:cds;Parent=MsG0780039449.01.T01
Chr7 CDS 64210497 64210557 64210497 ID=MsG0780039449.01.T01:cds;Parent=MsG0780039449.01.T01
Chr7 CDS 64211196 64211379 64211196 ID=MsG0780039449.01.T01:cds;Parent=MsG0780039449.01.T01
Chr7 CDS 64211825 64211924 64211825 ID=MsG0780039449.01.T01:cds;Parent=MsG0780039449.01.T01
Chr7 CDS 64212061 64212161 64212061 ID=MsG0780039449.01.T01:cds;Parent=MsG0780039449.01.T01
Chr7 CDS 64213109 64213202 64213109 ID=MsG0780039449.01.T01:cds;Parent=MsG0780039449.01.T01
Chr7 CDS 64213306 64213382 64213306 ID=MsG0780039449.01.T01:cds;Parent=MsG0780039449.01.T01
Chr7 three_prime_UTR 64213383 64213738 64213383 ID=MsG0780039449.01.T01:three_prime_utr;Parent=MsG0780039449.01.T01
Gene Sequence

>MsG0780039449.01.T01

ATGCTAACCCTCAATCTCAATTCTCTTTCTTCAACTCTTCCCTTTCATCCACTCTTTACTCAAACTCAGTTATTACTTCCTGCTAATCTTAATTACCCTTTTGCTAATACAGCTACCAGAAAGTTGAGGACTTTTCAGCTCAAGGCTGGATTTTGGGAGTCAATTAAATCTGGGTTGATGAAGAATAACACCACACAGGTCATCGATCCGGAGTTAACAGAAGAAGAAGACGAAGAACCTCTACCTCAAGAGTTTGTGCTTGTTGAAAAGACGGAACCTGATGGAACAATTGAGCAAATATTGTTCTCTTCAGGTGGAGATCTTGATGTTTATGATCTTCAAGCCCTCTGTGACAAGGTAGGGTGGCCTCGTAGGCCATTATCGAAATTAGCTGCTGCTTTGAAAAATAGCTATATGGTGGCCTCTCTGTATTCTATAAGAAAGTCACCAGGGTCAGAGGGGAATGAACAAAAGATATTAATTGGCATGGCCCGTGCTACATCAGACCATGCCTTCAATGCCACAATTTGGGATGTCCTAGTTGATCCAGGCTACCAGGGCCAAGGTCTTGGTAAAGCTCTTGTAGAGAAACTCATTCGAGCTCTTTTGCAAAGGGACATCGGTAATATTACTTTGTTCGCAGATAGTAAAGTCGTGGAATTTTATCGCAATTTAGGGTTTGAAGCTGACCCAGAGGGCATAAAAGGCATGTTCTGGTACCCAAATTGA

Protein sequence

>MsG0780039449.01.T01

MLTLNLNSLSSTLPFHPLFTQTQLLLPANLNYPFANTATRKLRTFQLKAGFWESIKSGLMKNNTTQVIDPELTEEEDEEPLPQEFVLVEKTEPDGTIEQILFSSGGDLDVYDLQALCDKVGWPRRPLSKLAAALKNSYMVASLYSIRKSPGSEGNEQKILIGMARATSDHAFNATIWDVLVDPGYQGQGLGKALVEKLIRALLQRDIGNITLFADSKVVEFYRNLGFEADPEGIKGMFWYPN*