AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280010926.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010926.01.T01 MTR_2g094790 98.936 188 2 0 1 188 1 188 1.16e-137 383
MsG0280010926.01.T01 MTR_1g064260 87.766 188 23 0 1 188 1 188 1.14e-122 346
MsG0280010926.01.T01 MTR_7g101290 88.710 186 21 0 3 188 4 189 3.11e-122 345
MsG0280010926.01.T01 MTR_0041s0100 88.710 186 21 0 3 188 4 189 3.11e-122 345
MsG0280010926.01.T01 MTR_4g058740 91.525 177 15 0 12 188 12 188 1.22e-119 338
MsG0280010926.01.T01 MTR_3g113710 75.385 195 48 0 1 195 3 197 1.48e-110 316
MsG0280010926.01.T01 MTR_3g113710 77.128 188 43 0 1 188 3 190 2.69e-109 312
MsG0280010926.01.T01 MTR_1g057020 77.717 184 41 0 5 188 1 184 1.55e-108 310
MsG0280010926.01.T01 MTR_1g015830 71.348 178 51 0 11 188 7 184 3.76e-95 276
MsG0280010926.01.T01 MTR_1g064260 90.909 132 12 0 57 188 1 132 2.97e-86 251
MsG0280010926.01.T01 MTR_1g015830 71.212 132 38 0 57 188 1 132 7.19e-67 202
MsG0280010926.01.T01 MTR_3g113710 80.870 115 22 0 74 188 10 124 3.79e-66 200
MsG0280010926.01.T01 MTR_1g024145 73.786 103 27 0 28 130 150 252 1.16e-48 159
MsG0280010926.01.T01 MTR_1g024850 75.714 70 17 0 10 79 14 83 1.65e-33 115
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280010926.01.T01 AT2G28305 89.730 185 19 0 10 194 5 189 6.89e-123 345
MsG0280010926.01.T01 AT2G28305 91.620 179 15 0 10 188 5 183 8.59e-121 341
MsG0280010926.01.T01 AT2G37210 87.912 182 22 0 7 188 8 189 1.96e-119 337
MsG0280010926.01.T01 AT3G53450 86.813 182 24 0 7 188 8 189 8.33e-117 331
MsG0280010926.01.T01 AT2G37210 77.184 206 23 1 7 188 8 213 1.09e-113 324
MsG0280010926.01.T01 AT5G06300 82.065 184 33 0 5 188 1 184 1.79e-111 317
MsG0280010926.01.T01 AT5G03270 80.952 189 35 1 2 189 7 195 3.96e-109 311
MsG0280010926.01.T01 AT5G03270 79.793 193 37 2 2 192 7 199 2.43e-108 309
MsG0280010926.01.T01 AT2G35990 73.370 184 49 0 5 188 1 184 4.48e-102 293
MsG0280010926.01.T01 AT4G35190 72.973 185 50 0 5 189 1 185 1.10e-101 292
MsG0280010926.01.T01 AT4G35190 72.826 184 50 0 5 188 1 184 1.28e-100 290
MsG0280010926.01.T01 AT5G11950 69.832 179 54 0 10 188 7 185 5.80e-93 271
MsG0280010926.01.T01 AT5G11950 69.832 179 54 0 10 188 7 185 5.80e-93 271
MsG0280010926.01.T01 AT5G11950 69.832 179 54 0 10 188 7 185 5.80e-93 271
MsG0280010926.01.T01 AT2G28305 92.593 135 10 0 10 144 5 139 6.14e-89 258
MsG0280010926.01.T01 AT2G35990 75.000 132 33 0 57 188 1 132 2.37e-71 214
MsG0280010926.01.T01 AT2G35990 75.000 132 33 0 57 188 1 132 2.37e-71 214
MsG0280010926.01.T01 AT5G11950 70.455 132 39 0 57 188 1 132 7.55e-66 200
MsG0280010926.01.T01 AT5G26140 53.906 128 37 1 84 189 6 133 4.22e-39 132
MsG0280010926.01.T01 AT5G26140 52.632 114 32 1 98 189 1 114 6.17e-32 113
MsG0280010926.01.T01 AT5G26140 59.036 83 34 0 107 189 17 99 2.97e-28 103

Find 49 sgRNAs with CRISPR-Local

Find 237 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAATATTGATCTAGTTTA+TGG 0.105402 2:-77055458 MsG0280010926.01.T01:CDS
CTCTCTTGGCATTAGTGTTT+TGG 0.116726 2:+77055186 None:intergenic
CCAACCTGGTAAGGCTATAA+AGG 0.339119 2:+77054139 None:intergenic
TATACTATGCTGCAGCTTAC+TGG 0.352094 2:-77054236 MsG0280010926.01.T01:intron
GGAGGCAGCATTGGCTTGAT+GGG 0.358074 2:-77055434 MsG0280010926.01.T01:CDS
TATTGAACTTGGAAAAGAAT+TGG 0.373481 2:-77055734 MsG0280010926.01.T01:intron
CTGCATAACTTTACCTCTCT+TGG 0.380590 2:+77055172 None:intergenic
TGGTAACAAAACTAGCTATA+AGG 0.381980 2:-77055764 MsG0280010926.01.T01:CDS
GTTGGATAGAAGTATATAGA+TGG 0.422963 2:+77051451 None:intergenic
GCATCAAAGGAAAGCTGAAA+TGG 0.434148 2:-77054177 MsG0280010926.01.T01:CDS
TATTTGCATGAAGGTGGGTA+TGG 0.435005 2:-77051790 MsG0280010926.01.T01:intron
AGGAGGCAGCATTGGCTTGA+TGG 0.438528 2:-77055435 MsG0280010926.01.T01:CDS
TTTGTCGATGAAAGTCAAAA+AGG 0.444110 2:+77051567 None:intergenic
AAATCTTTACCGGTTTATCA+TGG 0.448590 2:+77051719 None:intergenic
GTGGGATTGCTGAATGTTGA+TGG 0.455471 2:-77051601 MsG0280010926.01.T01:CDS
CCTTTGATATGAGTGGTTGA+TGG 0.456369 2:+77055867 None:intergenic
AAGGATGCTGCTATTGAACT+TGG 0.459571 2:-77055745 MsG0280010926.01.T01:CDS
TCTCTCACCTTTGATATGAG+TGG 0.472849 2:+77055860 None:intergenic
ATTTCTCAAGCTGTTTATGA+TGG 0.474406 2:-77055407 MsG0280010926.01.T01:CDS
GATGGCGGTCGACATGTGAT+TGG 0.483649 2:-77055389 MsG0280010926.01.T01:CDS
TTGGTGCAGACACAATTATA+TGG 0.490804 2:+77051509 None:intergenic
GTTTATGGAGGAGGCAGCAT+TGG 0.494069 2:-77055443 MsG0280010926.01.T01:CDS
TTGTTTGTACCAACCTGGTA+AGG 0.495823 2:+77054130 None:intergenic
CACAATTATATGGCGAGCTG+TGG 0.500721 2:+77051519 None:intergenic
ACTTGGCATCCATGATAAAC+CGG 0.501203 2:-77051728 MsG0280010926.01.T01:intron
GATGCCTTTATAGCCTTACC+AGG 0.517415 2:-77054143 MsG0280010926.01.T01:intron
ACAATTATATGGCGAGCTGT+GGG 0.517777 2:+77051520 None:intergenic
ATTGATCTAGTTTATGGAGG+AGG 0.523752 2:-77055452 MsG0280010926.01.T01:CDS
GTGATAACATGGGCTCAACT+TGG 0.532726 2:-77051745 MsG0280010926.01.T01:CDS
GAGGCAGCATTGGCTTGATG+GGG 0.534841 2:-77055433 MsG0280010926.01.T01:CDS
CAGTAGCTGACATGCATCAA+AGG 0.536960 2:-77054190 MsG0280010926.01.T01:CDS
ATCGACAAAGCTGTGGAGGA+AGG 0.545903 2:-77051553 MsG0280010926.01.T01:CDS
ATTTGCATGAAGGTGGGTAT+GGG 0.550161 2:-77051789 MsG0280010926.01.T01:intron
ATGGCGGTCGACATGTGATT+GGG 0.553317 2:-77055388 MsG0280010926.01.T01:intron
TCAAAGGTGAGAGAGAAGAA+TGG 0.554442 2:-77055851 MsG0280010926.01.T01:exon
GACTTTCATCGACAAAGCTG+TGG 0.562460 2:-77051560 MsG0280010926.01.T01:CDS
AGCTCCTTGAGGTGATAACA+TGG 0.564557 2:-77051756 MsG0280010926.01.T01:CDS
ATCGGTTAAATCGAAAACGT+TGG 0.568233 2:+77051433 None:intergenic
CAGCTTACTGGTGAAACAGT+AGG 0.570843 2:-77054224 MsG0280010926.01.T01:CDS
TCTCAAGCTGTTTATGATGG+CGG 0.577140 2:-77055404 MsG0280010926.01.T01:CDS
AATATTGATCTAGTTTATGG+AGG 0.578824 2:-77055455 MsG0280010926.01.T01:CDS
CCATCAACCACTCATATCAA+AGG 0.611945 2:-77055867 MsG0280010926.01.T01:five_prime_UTR
GAGCCCATGTTATCACCTCA+AGG 0.614099 2:+77051752 None:intergenic
TTTCATCGACAAAGCTGTGG+AGG 0.624003 2:-77051557 MsG0280010926.01.T01:CDS
CAAAACACTAATGCCAAGAG+AGG 0.626831 2:-77055185 MsG0280010926.01.T01:intron
GACACTTGAGGAGCTCCTTG+AGG 0.631827 2:-77051767 MsG0280010926.01.T01:CDS
CAATTATATGGCGAGCTGTG+GGG 0.655172 2:+77051521 None:intergenic
AGGTGGGTATGGGACACTTG+AGG 0.655697 2:-77051779 MsG0280010926.01.T01:CDS
GCTCCTTGAGGTGATAACAT+GGG 0.684486 2:-77051755 MsG0280010926.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTAAAGTTTACATTTTA+TGG + Chr2:77053419-77053438 None:intergenic 10.0%
!!! TTGTATTTTGATATATAAAA+AGG - Chr2:77051818-77051837 MsG0280010926.01.T01:intron 10.0%
!!! TTTTTACTTATATTTTGTTA+CGG + Chr2:77051718-77051737 None:intergenic 10.0%
!! AAAACCAAATCAATAATATT+TGG + Chr2:77055040-77055059 None:intergenic 15.0%
!! AAACATCAAAAATAAAGATT+AGG - Chr2:77054483-77054502 MsG0280010926.01.T01:intron 15.0%
!! AATGAAAAGAGAAAAAAAAA+AGG + Chr2:77053769-77053788 None:intergenic 15.0%
!! ATTTGTCATGTAATAATTAA+TGG + Chr2:77054430-77054449 None:intergenic 15.0%
!! CTTCTAATATTTGATTAAAT+GGG - Chr2:77053443-77053462 MsG0280010926.01.T01:intron 15.0%
!! GATGATAAAGAATATAAAAA+AGG + Chr2:77052497-77052516 None:intergenic 15.0%
!!! AAAAAATTGGTTTCAAAATT+GGG + Chr2:77055457-77055476 None:intergenic 15.0%
!!! ATAAAAGTTTTTGTTTTTGA+AGG - Chr2:77055681-77055700 MsG0280010926.01.T01:intron 15.0%
!!! GATGATTGTATATTTTTTTA+AGG + Chr2:77055380-77055399 None:intergenic 15.0%
!!! TTTTTTTCTCTTTTCATTTT+AGG - Chr2:77053771-77053790 MsG0280010926.01.T01:intron 15.0%
!! AAATATCGACAGTTAATATA+TGG + Chr2:77052764-77052783 None:intergenic 20.0%
!! AGTTTGTAAATTTGAACTAT+AGG + Chr2:77052366-77052385 None:intergenic 20.0%
!! ATATCATATCATAGGTATAT+AGG + Chr2:77051773-77051792 None:intergenic 20.0%
!! ATCAAAATACCTATTATTGA+AGG + Chr2:77054793-77054812 None:intergenic 20.0%
!! ATTACGATAAAGTAAAACAA+AGG + Chr2:77054831-77054850 None:intergenic 20.0%
!! CCATTTAATCAAATATTAGA+AGG + Chr2:77053445-77053464 None:intergenic 20.0%
!! CCTTCTAATATTTGATTAAA+TGG - Chr2:77053442-77053461 MsG0280010926.01.T01:intron 20.0%
!! GTACTAGAAATAGAAAAAAT+TGG + Chr2:77055470-77055489 None:intergenic 20.0%
!! TATATACCTATGATATGATA+TGG - Chr2:77051772-77051791 MsG0280010926.01.T01:CDS 20.0%
!! TATATTCTTTATCATCATTG+AGG - Chr2:77052501-77052520 MsG0280010926.01.T01:intron 20.0%
!! TCAAGCTTAAATTTATGATA+GGG + Chr2:77052572-77052591 None:intergenic 20.0%
!! TTAATTGAAAAGTGATAAGA+TGG - Chr2:77054515-77054534 MsG0280010926.01.T01:intron 20.0%
!! TTGAATAAAATTATCCTTAG+TGG + Chr2:77052735-77052754 None:intergenic 20.0%
!!! AGAAATATTGATCTAGTTTA+TGG - Chr2:77051846-77051865 MsG0280010926.01.T01:intron 20.0%
!!! AGCAAATTTTATCTCATAAA+AGG + Chr2:77055658-77055677 None:intergenic 20.0%
!!! ATTATATTTCAAGTAACGTT+TGG + Chr2:77054734-77054753 None:intergenic 20.0%
!!! ATTTGTTTTAGGTTAAAAGA+TGG + Chr2:77054128-77054147 None:intergenic 20.0%
!!! CTTATCACTTTTCAATTAAT+GGG + Chr2:77054514-77054533 None:intergenic 20.0%
!!! GAAAAAATTGGTTTCAAAAT+TGG + Chr2:77055458-77055477 None:intergenic 20.0%
!!! GCAAATTTTATCTCATAAAA+GGG + Chr2:77055657-77055676 None:intergenic 20.0%
!!! GGTTAAGTTTTATTTGTTTT+AGG + Chr2:77054139-77054158 None:intergenic 20.0%
!!! TCTTATCACTTTTCAATTAA+TGG + Chr2:77054515-77054534 None:intergenic 20.0%
!!! TTGTTGGTTAAAATCTATAT+AGG - Chr2:77053956-77053975 MsG0280010926.01.T01:intron 20.0%
! AAAAACAAATCCATACTTCA+TGG - Chr2:77055178-77055197 MsG0280010926.01.T01:intron 25.0%
! AAAAGAGCTTGTCAAAAATA+TGG - Chr2:77055822-77055841 MsG0280010926.01.T01:CDS 25.0%
! AGAATTTGGATTTATGAAGT+TGG - Chr2:77053332-77053351 MsG0280010926.01.T01:intron 25.0%
! AGTGATATGAGTATTTAGTA+GGG + Chr2:77052986-77053005 None:intergenic 25.0%
! ATACAATCATCTAACAAAAC+TGG - Chr2:77055389-77055408 MsG0280010926.01.T01:CDS 25.0%
! ATATATATTTGCATGAAGGT+GGG - Chr2:77055509-77055528 MsG0280010926.01.T01:intron 25.0%
! ATATTATTGGTCATATGTGT+TGG - Chr2:77053600-77053619 MsG0280010926.01.T01:intron 25.0%
! ATATTGAGATAACAAAAGCA+TGG + Chr2:77052252-77052271 None:intergenic 25.0%
! ATGATTCACAAGTTTAATAG+TGG + Chr2:77053527-77053546 None:intergenic 25.0%
! ATGTGATTCCTATGTAAATT+TGG + Chr2:77053986-77054005 None:intergenic 25.0%
! CTATTGTTTCAGTGATAATT+TGG - Chr2:77053043-77053062 MsG0280010926.01.T01:intron 25.0%
! CTTAAACCTATTTGGATTTA+CGG - Chr2:77051965-77051984 MsG0280010926.01.T01:intron 25.0%
! GAGATACTAGTAGATATTAT+TGG - Chr2:77053587-77053606 MsG0280010926.01.T01:intron 25.0%
! GGTTATATATATTTGCATGA+AGG - Chr2:77055505-77055524 MsG0280010926.01.T01:intron 25.0%
! GTCAAGCTTAAATTTATGAT+AGG + Chr2:77052573-77052592 None:intergenic 25.0%
! TACAATCATCTAACAAAACT+GGG - Chr2:77055390-77055409 MsG0280010926.01.T01:CDS 25.0%
! TATATATATTTGCATGAAGG+TGG - Chr2:77055508-77055527 MsG0280010926.01.T01:intron 25.0%
! TATTGAACTTGGAAAAGAAT+TGG - Chr2:77051570-77051589 MsG0280010926.01.T01:CDS 25.0%
! TCAAAAGAATTTGACGTATT+TGG - Chr2:77051743-77051762 MsG0280010926.01.T01:CDS 25.0%
! TGTAGAATGAAAATCTTTAC+CGG + Chr2:77055598-77055617 None:intergenic 25.0%
! TTCTTCTTCTTAAACCTATT+TGG - Chr2:77051957-77051976 MsG0280010926.01.T01:intron 25.0%
!! AATATTGATCTAGTTTATGG+AGG - Chr2:77051849-77051868 MsG0280010926.01.T01:intron 25.0%
!! AGTAGTGATTCACTAATTTT+TGG + Chr2:77053551-77053570 None:intergenic 25.0%
!! GTAAGTTCAAAAATTCCTTT+TGG + Chr2:77054376-77054395 None:intergenic 25.0%
!! GTGTCCAAATATTATTGATT+TGG - Chr2:77055033-77055052 MsG0280010926.01.T01:intron 25.0%
!! TATGTGTTGGTATATTTAGA+TGG - Chr2:77053613-77053632 MsG0280010926.01.T01:intron 25.0%
!! TTTCTTCTGAGTTTGAATTT+TGG + Chr2:77055314-77055333 None:intergenic 25.0%
!! TTTTAACCAACAAAAAGAGT+AGG + Chr2:77053949-77053968 None:intergenic 25.0%
!!! AAAGTTTTTGTTTTTGAAGG+TGG - Chr2:77055684-77055703 MsG0280010926.01.T01:intron 25.0%
!!! AAGTTTTTGTTTTTGAAGGT+GGG - Chr2:77055685-77055704 MsG0280010926.01.T01:intron 25.0%
!!! ATATTTTTGACAAGCTCTTT+TGG + Chr2:77055823-77055842 None:intergenic 25.0%
!!! ATTTTTTTAAGGACCAATGT+TGG + Chr2:77055369-77055388 None:intergenic 25.0%
!!! TAGTACCATGTTTTCTAAAA+GGG - Chr2:77055484-77055503 MsG0280010926.01.T01:intron 25.0%
!!! TATAACCCTTTTAGAAAACA+TGG + Chr2:77055492-77055511 None:intergenic 25.0%
!!! TTGGAAAGCACTTAAATTTT+TGG - Chr2:77053880-77053899 MsG0280010926.01.T01:intron 25.0%
AAAGTGGGGAAAAAATTGAT+TGG + Chr2:77053857-77053876 None:intergenic 30.0%
AAATATTGGAGCTAGAAAGA+AGG + Chr2:77053200-77053219 None:intergenic 30.0%
AAGAATATCTATCTTGCAAG+TGG - Chr2:77055070-77055089 MsG0280010926.01.T01:intron 30.0%
AAGAGTAGGTTGTAAAGTTT+AGG + Chr2:77053935-77053954 None:intergenic 30.0%
AATGCCAATGAGAATCTAAA+GGG + Chr2:77052471-77052490 None:intergenic 30.0%
ACAATCATCTAACAAAACTG+GGG - Chr2:77055391-77055410 MsG0280010926.01.T01:CDS 30.0%
ACCATCCATGAGAAAAATAT+TGG + Chr2:77053214-77053233 None:intergenic 30.0%
AGAAATTCTAATATGGTCAC+GGG - Chr2:77054900-77054919 MsG0280010926.01.T01:intron 30.0%
AGCTTATTAATCATCTGAGT+TGG + Chr2:77054169-77054188 None:intergenic 30.0%
ATTTCTCAAGCTGTTTATGA+TGG - Chr2:77051897-77051916 MsG0280010926.01.T01:intron 30.0%
ATTTGGATTTATGAAGTTGG+AGG - Chr2:77053335-77053354 MsG0280010926.01.T01:intron 30.0%
CAAATTCTTCTATAGTCATG+CGG + Chr2:77053320-77053339 None:intergenic 30.0%
CCTAGAGTTAAAAAAGTTGT+AGG - Chr2:77055287-77055306 MsG0280010926.01.T01:intron 30.0%
CGATAAATTTGACGATATCA+CGG + Chr2:77052018-77052037 None:intergenic 30.0%
CTTATCTATCAATATACACC+TGG - Chr2:77052384-77052403 MsG0280010926.01.T01:intron 30.0%
CTTTCAAAGCCTTCAATAAT+AGG - Chr2:77054781-77054800 MsG0280010926.01.T01:intron 30.0%
GAAACACCATATCATATCAT+AGG + Chr2:77051781-77051800 None:intergenic 30.0%
GAGAAATTCTAATATGGTCA+CGG - Chr2:77054899-77054918 MsG0280010926.01.T01:intron 30.0%
GAGTGATATGAGTATTTAGT+AGG + Chr2:77052987-77053006 None:intergenic 30.0%
GGGTATCTCTATAAATGTAA+GGG - Chr2:77053493-77053512 MsG0280010926.01.T01:intron 30.0%
TAACAACTAATCACCAACAT+TGG - Chr2:77055353-77055372 MsG0280010926.01.T01:intron 30.0%
TAATGCCAATGAGAATCTAA+AGG + Chr2:77052472-77052491 None:intergenic 30.0%
TGATTCCTATGTAAATTTGG+TGG + Chr2:77053983-77054002 None:intergenic 30.0%
TGCAAGGAGAAATTCTAATA+TGG - Chr2:77054893-77054912 MsG0280010926.01.T01:intron 30.0%
TGGTAACAAAACTAGCTATA+AGG - Chr2:77051540-77051559 MsG0280010926.01.T01:CDS 30.0%
TGTGGAATGTAAATTCCAAT+AGG - Chr2:77053233-77053252 MsG0280010926.01.T01:intron 30.0%
TTCCAATAGGTGATTCATTA+AGG - Chr2:77053246-77053265 MsG0280010926.01.T01:intron 30.0%
TTTGTCGATGAAAGTCAAAA+AGG + Chr2:77055740-77055759 None:intergenic 30.0%
! AAGAGAATTTGTGTGTTTTG+TGG - Chr2:77051508-77051527 MsG0280010926.01.T01:CDS 30.0%
! AAGATCTTTTCCCTGAAAAA+CGG - Chr2:77054289-77054308 MsG0280010926.01.T01:intron 30.0%
! AGAATCTAAAGGGTGTAATA+TGG + Chr2:77052461-77052480 None:intergenic 30.0%
! ATCATCTGAGTTGGATAATT+TGG + Chr2:77054160-77054179 None:intergenic 30.0%
! ATGTCATGATGAGTTTTTGA+AGG + Chr2:77052914-77052933 None:intergenic 30.0%
! CTAGTACCATGTTTTCTAAA+AGG - Chr2:77055483-77055502 MsG0280010926.01.T01:intron 30.0%
! GTTGGATAGAAGTATATAGA+TGG + Chr2:77055856-77055875 None:intergenic 30.0%
! TAGCTCCAATATTTTTCTCA+TGG - Chr2:77053206-77053225 MsG0280010926.01.T01:intron 30.0%
! TCCAATATTTTTCTCATGGA+TGG - Chr2:77053210-77053229 MsG0280010926.01.T01:intron 30.0%
! TGCTGATACAAATGCATTTT+TGG - Chr2:77052956-77052975 MsG0280010926.01.T01:intron 30.0%
! TTACAACCTACTCTTTTTGT+TGG - Chr2:77053940-77053959 MsG0280010926.01.T01:intron 30.0%
!! AAATCTTTACCGGTTTATCA+TGG + Chr2:77055588-77055607 None:intergenic 30.0%
!! AATGTTGGTGATTAGTTGTT+AGG + Chr2:77055354-77055373 None:intergenic 30.0%
!!! ATTTTTTCCCCACTTTTTGT+TGG - Chr2:77053861-77053880 MsG0280010926.01.T01:intron 30.0%
!!! CCTACAACTTTTTTAACTCT+AGG + Chr2:77055290-77055309 None:intergenic 30.0%
!!! TATAGCTAGTTTTGTTACCA+GGG + Chr2:77051540-77051559 None:intergenic 30.0%
!!! TTATAGCTAGTTTTGTTACC+AGG + Chr2:77051541-77051560 None:intergenic 30.0%
AAGTAGATGACCATGAAGTA+TGG + Chr2:77055191-77055210 None:intergenic 35.0%
AAGTGCTTTCCAACAAAAAG+TGG + Chr2:77053873-77053892 None:intergenic 35.0%
ACACAAACCCAAAGATATAG+GGG - Chr2:77055100-77055119 MsG0280010926.01.T01:intron 35.0%
ACATGGAGAGAAAGACAAAA+TGG + Chr2:77052437-77052456 None:intergenic 35.0%
AGAGCTTGTCAAAAATATGG+AGG - Chr2:77055825-77055844 MsG0280010926.01.T01:CDS 35.0%
AGTGCTTTCCAACAAAAAGT+GGG + Chr2:77053872-77053891 None:intergenic 35.0%
ATATTCTAACCGTGTGAACT+AGG - Chr2:77053471-77053490 MsG0280010926.01.T01:intron 35.0%
ATTCTTACATCGATCTTGCA+AGG - Chr2:77054877-77054896 MsG0280010926.01.T01:intron 35.0%
CAAAGATAGTCCTCTAATTC+TGG - Chr2:77055222-77055241 MsG0280010926.01.T01:intron 35.0%
CACACAAACCCAAAGATATA+GGG - Chr2:77055099-77055118 MsG0280010926.01.T01:intron 35.0%
CCTATGAATAAACTCCACTA+AGG - Chr2:77052718-77052737 MsG0280010926.01.T01:intron 35.0%
CCTTAGTGGAGTTTATTCAT+AGG + Chr2:77052721-77052740 None:intergenic 35.0%
CGCATGACTATAGAAGAATT+TGG - Chr2:77053318-77053337 MsG0280010926.01.T01:intron 35.0%
GAAAGACAAAATGGTTCAGA+AGG + Chr2:77052428-77052447 None:intergenic 35.0%
GCAAGATAGATATTCTTCCA+TGG + Chr2:77055067-77055086 None:intergenic 35.0%
GGAAAAAATTGATTGGCAGT+TGG + Chr2:77053850-77053869 None:intergenic 35.0%
GTGCGATTATTCATTCAAGT+GGG - Chr2:77052297-77052316 MsG0280010926.01.T01:intron 35.0%
TAAATTTGACGATATCACGG+TGG + Chr2:77052015-77052034 None:intergenic 35.0%
TACACCCTTTAGATTCTCAT+TGG - Chr2:77052464-77052483 MsG0280010926.01.T01:intron 35.0%
TAGGTCCACCAAATTTACAT+AGG - Chr2:77053975-77053994 MsG0280010926.01.T01:intron 35.0%
TAGGTTAAAAGATGGTTGAC+TGG + Chr2:77054120-77054139 None:intergenic 35.0%
TATTCTAACCGTGTGAACTA+GGG - Chr2:77053472-77053491 MsG0280010926.01.T01:intron 35.0%
TATTCTCTCACCAGAATTAG+AGG + Chr2:77055235-77055254 None:intergenic 35.0%
TCATTAAGGCACATGTCAAA+AGG - Chr2:77053260-77053279 MsG0280010926.01.T01:intron 35.0%
TGCAAGATCGATGTAAGAAT+GGG + Chr2:77054877-77054896 None:intergenic 35.0%
TGCCTTAATGAATCACCTAT+TGG + Chr2:77053251-77053270 None:intergenic 35.0%
TGTGCGATTATTCATTCAAG+TGG - Chr2:77052296-77052315 MsG0280010926.01.T01:intron 35.0%
TTGCAAGATCGATGTAAGAA+TGG + Chr2:77054878-77054897 None:intergenic 35.0%
TTGGTGCAGACACAATTATA+TGG + Chr2:77055798-77055817 None:intergenic 35.0%
! AAAGGGTGTAATATGGAACA+TGG + Chr2:77052454-77052473 None:intergenic 35.0%
! AATTCCTTTTGGACATCGTA+TGG + Chr2:77054365-77054384 None:intergenic 35.0%
! ATTGATCTAGTTTATGGAGG+AGG - Chr2:77051852-77051871 MsG0280010926.01.T01:intron 35.0%
! CTATATCTTTGGGTTTGTGT+GGG + Chr2:77055100-77055119 None:intergenic 35.0%
! GGGGTATCTCTATAAATGTA+AGG - Chr2:77053492-77053511 MsG0280010926.01.T01:intron 35.0%
! GTGACCAAACACTATTTTCT+TGG + Chr2:77054927-77054946 None:intergenic 35.0%
! TAATTAATGGACAACCGAAG+TGG + Chr2:77054417-77054436 None:intergenic 35.0%
! TATTTTTCTCATGGATGGTG+TGG - Chr2:77053215-77053234 MsG0280010926.01.T01:intron 35.0%
! TCTCTTGGCATTAGTGTTTT+GGG + Chr2:77052120-77052139 None:intergenic 35.0%
!! AGGTCTAATTCCGTTTTTCA+GGG + Chr2:77054302-77054321 None:intergenic 35.0%
!! GATGAGTTTTTGAAGGTAGT+GGG + Chr2:77052907-77052926 None:intergenic 35.0%
!! TGATGAGTTTTTGAAGGTAG+TGG + Chr2:77052908-77052927 None:intergenic 35.0%
!!! TTGATTTGGTTTTGTGACCA+TGG - Chr2:77055047-77055066 MsG0280010926.01.T01:intron 35.0%
AACGGAATTAGACCTCTAAG+TGG - Chr2:77054307-77054326 MsG0280010926.01.T01:intron 40.0%
AAGACCATACGATGTCCAAA+AGG - Chr2:77054358-77054377 MsG0280010926.01.T01:intron 40.0%
AAGGATGCTGCTATTGAACT+TGG - Chr2:77051559-77051578 MsG0280010926.01.T01:CDS 40.0%
AATATACACCTGGCAATCTG+GGG - Chr2:77052394-77052413 MsG0280010926.01.T01:intron 40.0%
ACAATTATATGGCGAGCTGT+GGG + Chr2:77055787-77055806 None:intergenic 40.0%
ACGGAATTAGACCTCTAAGT+GGG - Chr2:77054308-77054327 MsG0280010926.01.T01:intron 40.0%
ACTTGGCATCCATGATAAAC+CGG - Chr2:77055576-77055595 MsG0280010926.01.T01:intron 40.0%
ATCTAACAAAACTGGGGAAG+TGG - Chr2:77055397-77055416 MsG0280010926.01.T01:CDS 40.0%
ATTACATGAATGCGCCACTT+CGG - Chr2:77054400-77054419 MsG0280010926.01.T01:intron 40.0%
ATTCTAACCGTGTGAACTAG+GGG - Chr2:77053473-77053492 MsG0280010926.01.T01:intron 40.0%
ATTTGCATGAAGGTGGGTAT+GGG - Chr2:77055515-77055534 MsG0280010926.01.T01:intron 40.0%
CAAAACACTAATGCCAAGAG+AGG - Chr2:77052119-77052138 MsG0280010926.01.T01:intron 40.0%
CAATATACACCTGGCAATCT+GGG - Chr2:77052393-77052412 MsG0280010926.01.T01:intron 40.0%
CATTTGTATCAGCAGCGAAA+GGG + Chr2:77052950-77052969 None:intergenic 40.0%
CCACACAAACCCAAAGATAT+AGG - Chr2:77055098-77055117 MsG0280010926.01.T01:intron 40.0%
CTGCATAACTTTACCTCTCT+TGG + Chr2:77052135-77052154 None:intergenic 40.0%
GAAGAAGAAGATGAAGCTCT+TGG + Chr2:77051946-77051965 None:intergenic 40.0%
GAGGTAAAGTTATGCAGCAT+TGG - Chr2:77052138-77052157 MsG0280010926.01.T01:intron 40.0%
GCATCAAAGGAAAGCTGAAA+TGG - Chr2:77053127-77053146 MsG0280010926.01.T01:intron 40.0%
GGGACCAAGAAAATAGTGTT+TGG - Chr2:77054920-77054939 MsG0280010926.01.T01:intron 40.0%
GGGTTTCCGTAAATCCAAAT+AGG + Chr2:77051974-77051993 None:intergenic 40.0%
GTGCTTTCCAACAAAAAGTG+GGG + Chr2:77053871-77053890 None:intergenic 40.0%
TATACTATGCTGCAGCTTAC+TGG - Chr2:77053068-77053087 MsG0280010926.01.T01:intron 40.0%
TATTTGCATGAAGGTGGGTA+TGG - Chr2:77055514-77055533 MsG0280010926.01.T01:intron 40.0%
TCAAAGGTGAGAGAGAAGAA+TGG - Chr2:77051453-77051472 MsG0280010926.01.T01:CDS 40.0%
TCAATATACACCTGGCAATC+TGG - Chr2:77052392-77052411 MsG0280010926.01.T01:intron 40.0%
TCATGCAATCGTGACAACAT+CGG - Chr2:77053367-77053386 MsG0280010926.01.T01:intron 40.0%
TCTCAAGCTGTTTATGATGG+CGG - Chr2:77051900-77051919 MsG0280010926.01.T01:intron 40.0%
TCTCTCACCTTTGATATGAG+TGG + Chr2:77051447-77051466 None:intergenic 40.0%
TTCATTCAAGTGGGAACTAG+TGG - Chr2:77052306-77052325 MsG0280010926.01.T01:intron 40.0%
TTGTCACGATTGCATGAATG+TGG + Chr2:77053364-77053383 None:intergenic 40.0%
TTGTTTGTACCAACCTGGTA+AGG + Chr2:77053177-77053196 None:intergenic 40.0%
! CCTATATCTTTGGGTTTGTG+TGG + Chr2:77055101-77055120 None:intergenic 40.0%
! CTCTCTTGGCATTAGTGTTT+TGG + Chr2:77052121-77052140 None:intergenic 40.0%
!! GAAGGCTTTGAAAGCGATTA+AGG + Chr2:77054775-77054794 None:intergenic 40.0%
!! GAGGTCTAATTCCGTTTTTC+AGG + Chr2:77054303-77054322 None:intergenic 40.0%
!! TTGACAAGCTCTTTTGGTGT+TGG + Chr2:77055817-77055836 None:intergenic 40.0%
AGAGAAAGCTGCCCTTATCA+TGG + Chr2:77055127-77055146 None:intergenic 45.0%
AGAGATACCCCTAGTTCACA+CGG + Chr2:77053483-77053502 None:intergenic 45.0%
AGATATAGGGGCCCATGATA+AGG - Chr2:77055112-77055131 MsG0280010926.01.T01:intron 45.0%
AGCTCCTTGAGGTGATAACA+TGG - Chr2:77055548-77055567 MsG0280010926.01.T01:intron 45.0%
ATAAACAACCCCAGATTGCC+AGG + Chr2:77052405-77052424 None:intergenic 45.0%
ATCATGGGCCCCTATATCTT+TGG + Chr2:77055111-77055130 None:intergenic 45.0%
CAATACGATACCCCACTTAG+AGG + Chr2:77054322-77054341 None:intergenic 45.0%
CAATTATATGGCGAGCTGTG+GGG + Chr2:77055786-77055805 None:intergenic 45.0%
CACAATTATATGGCGAGCTG+TGG + Chr2:77055788-77055807 None:intergenic 45.0%
CAGCTTACTGGTGAAACAGT+AGG - Chr2:77053080-77053099 MsG0280010926.01.T01:intron 45.0%
CAGTAGCTGACATGCATCAA+AGG - Chr2:77053114-77053133 MsG0280010926.01.T01:intron 45.0%
CCAACCTGGTAAGGCTATAA+AGG + Chr2:77053168-77053187 None:intergenic 45.0%
CGGAATTAGACCTCTAAGTG+GGG - Chr2:77054309-77054328 MsG0280010926.01.T01:intron 45.0%
GAAGGTTGTTTGTACCAACC+TGG + Chr2:77053182-77053201 None:intergenic 45.0%
GACTTTCATCGACAAAGCTG+TGG - Chr2:77055744-77055763 MsG0280010926.01.T01:CDS 45.0%
GAGAAAGCTGCCCTTATCAT+GGG + Chr2:77055126-77055145 None:intergenic 45.0%
GATATAGGGGCCCATGATAA+GGG - Chr2:77055113-77055132 MsG0280010926.01.T01:intron 45.0%
GCATTTGTATCAGCAGCGAA+AGG + Chr2:77052951-77052970 None:intergenic 45.0%
GCTCCTTGAGGTGATAACAT+GGG - Chr2:77055549-77055568 MsG0280010926.01.T01:intron 45.0%
GGCACAATGCGATTATGCTA+GGG + Chr2:77051994-77052013 None:intergenic 45.0%
GTGATAACATGGGCTCAACT+TGG - Chr2:77055559-77055578 MsG0280010926.01.T01:intron 45.0%
GTGGGATTGCTGAATGTTGA+TGG - Chr2:77055703-77055722 MsG0280010926.01.T01:intron 45.0%
TCATGGGCCCCTATATCTTT+GGG + Chr2:77055110-77055129 None:intergenic 45.0%
TGGCACAATGCGATTATGCT+AGG + Chr2:77051995-77052014 None:intergenic 45.0%
TTTCATCGACAAAGCTGTGG+AGG - Chr2:77055747-77055766 MsG0280010926.01.T01:CDS 45.0%
! CCTTTATAGCCTTACCAGGT+TGG - Chr2:77053165-77053184 MsG0280010926.01.T01:intron 45.0%
! GATGCCTTTATAGCCTTACC+AGG - Chr2:77053161-77053180 MsG0280010926.01.T01:intron 45.0%
!! AATTAAATATTAGATTTATA+TGG + Chr2:77052595-77052614 None:intergenic 5.0%
!!! TATATAATTTTGATATATTT+TGG + Chr2:77053662-77053681 None:intergenic 5.0%
ATCGACAAAGCTGTGGAGGA+AGG - Chr2:77055751-77055770 MsG0280010926.01.T01:CDS 50.0%
ATGGCGGTCGACATGTGATT+GGG - Chr2:77051916-77051935 MsG0280010926.01.T01:intron 50.0%
GAGCCCATGTTATCACCTCA+AGG + Chr2:77055555-77055574 None:intergenic 50.0%
GTTTATGGAGGAGGCAGCAT+TGG - Chr2:77051861-77051880 MsG0280010926.01.T01:intron 50.0%
! GTGTTTTGTGGTAGTAGCCC+TGG - Chr2:77051520-77051539 MsG0280010926.01.T01:CDS 50.0%
AGGTGGGTATGGGACACTTG+AGG - Chr2:77055525-77055544 MsG0280010926.01.T01:intron 55.0%
ATTGGCAGTTGGCACGTCAC+AGG + Chr2:77053839-77053858 None:intergenic 55.0%
GACACTTGAGGAGCTCCTTG+AGG - Chr2:77055537-77055556 MsG0280010926.01.T01:intron 55.0%
! GATGGCGGTCGACATGTGAT+TGG - Chr2:77051915-77051934 MsG0280010926.01.T01:intron 55.0%
!! AGGAGGCAGCATTGGCTTGA+TGG - Chr2:77051869-77051888 MsG0280010926.01.T01:intron 55.0%
!! GAGGCAGCATTGGCTTGATG+GGG - Chr2:77051871-77051890 MsG0280010926.01.T01:intron 55.0%
!! GGAGGCAGCATTGGCTTGAT+GGG - Chr2:77051870-77051889 MsG0280010926.01.T01:intron 55.0%
GGCAGTTGGCACGTCACAGG+TGG + Chr2:77053836-77053855 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr2 gene 77051438 77055888 77051438 ID=MsG0280010926.01;Name=MsG0280010926.01
Chr2 mRNA 77051438 77055888 77051438 ID=MsG0280010926.01.T01;Parent=MsG0280010926.01;Name=MsG0280010926.01.T01;_AED=0.50;_eAED=0.50;_QI=34|1|0.83|1|1|1|6|0|201
Chr2 exon 77051438 77051623 77051438 ID=MsG0280010926.01.T01:exon:11376;Parent=MsG0280010926.01.T01
Chr2 exon 77051729 77051799 77051729 ID=MsG0280010926.01.T01:exon:11375;Parent=MsG0280010926.01.T01
Chr2 exon 77054144 77054243 77054144 ID=MsG0280010926.01.T01:exon:11374;Parent=MsG0280010926.01.T01
Chr2 exon 77055186 77055216 77055186 ID=MsG0280010926.01.T01:exon:11373;Parent=MsG0280010926.01.T01
Chr2 exon 77055389 77055486 77055389 ID=MsG0280010926.01.T01:exon:11372;Parent=MsG0280010926.01.T01
Chr2 exon 77055735 77055888 77055735 ID=MsG0280010926.01.T01:exon:11371;Parent=MsG0280010926.01.T01
Chr2 five_prime_UTR 77055855 77055888 77055855 ID=MsG0280010926.01.T01:five_prime_utr;Parent=MsG0280010926.01.T01
Chr2 CDS 77055735 77055854 77055735 ID=MsG0280010926.01.T01:cds;Parent=MsG0280010926.01.T01
Chr2 CDS 77055389 77055486 77055389 ID=MsG0280010926.01.T01:cds;Parent=MsG0280010926.01.T01
Chr2 CDS 77055186 77055216 77055186 ID=MsG0280010926.01.T01:cds;Parent=MsG0280010926.01.T01
Chr2 CDS 77054144 77054243 77054144 ID=MsG0280010926.01.T01:cds;Parent=MsG0280010926.01.T01
Chr2 CDS 77051729 77051799 77051729 ID=MsG0280010926.01.T01:cds;Parent=MsG0280010926.01.T01
Chr2 CDS 77051438 77051623 77051438 ID=MsG0280010926.01.T01:cds;Parent=MsG0280010926.01.T01
Gene Sequence

>MsG0280010926.01.T01

ATGGAAAGAGAGATAGAGATGAAGCTATCAAAGTTTAAGAGAATTTGTGTGTTTTGTGGTAGTAGCCCTGGTAACAAAACTAGCTATAAGGATGCTGCTATTGAACTTGGAAAAGAATTGGTTTCAAGAAATATTGATCTAGTTTATGGAGGAGGCAGCATTGGCTTGATGGGGTTGATTTCTCAAGCTGTTTATGATGGCGGTCGACATGTGATTGGAGTGATTCCCAAAACACTAATGCCAAGAGAGCTTACTGGTGAAACAGTAGGAGAAGTGAAAGCAGTAGCTGACATGCATCAAAGGAAAGCTGAAATGGCTAGAAATTCTGATGCCTTTATAGCCTTACCAGGTGGGTATGGGACACTTGAGGAGCTCCTTGAGGTGATAACATGGGCTCAACTTGGCATCCATGATAAACCGGTGGGATTGCTGAATGTTGATGGATACTACAATTCCTTTTTGACTTTCATCGACAAAGCTGTGGAGGAAGGATTCATTAGCCCCACAGCTCGCCATATAATTGTGTCTGCACCAACACCAAAAGAGCTTGTCAAAAATATGGAGGTAATTCCATCTATATACTTCTATCCAACGTTTTCGATTTAA

Protein sequence

>MsG0280010926.01.T01

MEREIEMKLSKFKRICVFCGSSPGNKTSYKDAAIELGKELVSRNIDLVYGGGSIGLMGLISQAVYDGGRHVIGVIPKTLMPRELTGETVGEVKAVADMHQRKAEMARNSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSFLTFIDKAVEEGFISPTARHIIVSAPTPKELVKNMEVIPSIYFYPTFSI*