Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028395.01.T01 | XP_003615614.1 | 77.811 | 338 | 64 | 2 | 8 | 334 | 56 | 393 | 2.85E-164 | 473 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028395.01.T01 | Q9SD61 | 67.717 | 127 | 39 | 1 | 4 | 128 | 52 | 178 | 4.37E-54 | 184 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028395.01.T01 | G7K6D4 | 77.811 | 338 | 64 | 2 | 8 | 334 | 56 | 393 | 1.36e-164 | 473 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048461.01 | MsG0580028395.01 | 0.814260 | 1.686539e-51 | 1.126212e-48 |
| MsG0080048462.01 | MsG0580028395.01 | 0.812860 | 3.427650e-51 | 2.203578e-48 |
| MsG0080048856.01 | MsG0580028395.01 | 0.801070 | 1.070789e-48 | 5.066688e-46 |
| MsG0080048874.01 | MsG0580028395.01 | 0.805050 | 1.609216e-49 | 8.429283e-47 |
| MsG0180000470.01 | MsG0580028395.01 | 0.834378 | 3.103359e-56 | 3.676372e-53 |
| MsG0180001971.01 | MsG0580028395.01 | 0.800212 | 1.602135e-48 | 7.417314e-46 |
| MsG0180003455.01 | MsG0580028395.01 | 0.802828 | 4.660937e-49 | 2.306175e-46 |
| MsG0180003669.01 | MsG0580028395.01 | 0.800434 | 1.444055e-48 | 6.723289e-46 |
| MsG0180004465.01 | MsG0580028395.01 | 0.800797 | 1.217691e-48 | 5.721711e-46 |
| MsG0180005050.01 | MsG0580028395.01 | 0.815028 | 1.139955e-51 | 7.771940e-49 |
| MsG0280010698.01 | MsG0580028395.01 | 0.822942 | 1.807983e-53 | 1.535137e-50 |
| MsG0380012460.01 | MsG0580028395.01 | 0.803459 | 3.451608e-49 | 1.735446e-46 |
| MsG0380013176.01 | MsG0580028395.01 | 0.804617 | 1.982317e-49 | 1.026803e-46 |
| MsG0380014537.01 | MsG0580028395.01 | 0.821846 | 3.249146e-53 | 2.674108e-50 |
| MsG0380014701.01 | MsG0580028395.01 | 0.804951 | 1.687972e-49 | 8.819769e-47 |
| MsG0480018465.01 | MsG0580028395.01 | 0.808773 | 2.626442e-50 | 1.514868e-47 |
| MsG0480019435.01 | MsG0580028395.01 | 0.804872 | 1.753708e-49 | 9.144951e-47 |
| MsG0480020739.01 | MsG0580028395.01 | 0.804355 | 2.248354e-49 | 1.156783e-46 |
| MsG0480021536.01 | MsG0580028395.01 | 0.801138 | 1.037378e-48 | 4.916972e-46 |
| MsG0480021688.01 | MsG0580028395.01 | 0.803515 | 3.360223e-49 | 1.691990e-46 |
| MsG0480023654.01 | MsG0580028395.01 | 0.808660 | 2.777313e-50 | 1.597155e-47 |
| MsG0480023670.01 | MsG0580028395.01 | 0.802227 | 6.200874e-49 | 3.021149e-46 |
| MsG0580024552.01 | MsG0580028395.01 | 0.805123 | 1.554203e-49 | 8.156337e-47 |
| MsG0580024690.01 | MsG0580028395.01 | 0.820101 | 8.193348e-53 | 6.423577e-50 |
| MsG0580025022.01 | MsG0580028395.01 | 0.806587 | 7.652623e-50 | 4.169342e-47 |
| MsG0580025723.01 | MsG0580028395.01 | 0.807304 | 5.397087e-50 | 2.995719e-47 |
| MsG0380015332.01 | MsG0580028395.01 | 0.805517 | 1.284744e-49 | 6.810614e-47 |
| MsG0380015555.01 | MsG0580028395.01 | 0.814926 | 1.201131e-51 | 8.165831e-49 |
| MsG0380016517.01 | MsG0580028395.01 | 0.815705 | 8.062301e-52 | 5.599482e-49 |
| MsG0580027152.01 | MsG0580028395.01 | 0.809583 | 1.761264e-50 | 1.038148e-47 |
| MsG0580028395.01 | MsG0580029554.01 | 0.802977 | 4.343417e-49 | 2.156906e-46 |
| MsG0580028395.01 | MsG0680035736.01 | 0.800319 | 1.523764e-48 | 7.073879e-46 |
| MsG0580028395.01 | MsG0780037054.01 | 0.808908 | 2.458118e-50 | 1.422867e-47 |
| MsG0580028395.01 | MsG0780037146.01 | 0.819446 | 1.156627e-52 | 8.902637e-50 |
| MsG0580028395.01 | MsG0780038386.01 | 0.811931 | 5.469965e-51 | 3.430267e-48 |
| MsG0580028395.01 | MsG0780038391.01 | 0.808565 | 2.910347e-50 | 1.669546e-47 |
| MsG0580028395.01 | MsG0780038401.01 | 0.805973 | 1.030579e-49 | 5.527898e-47 |
| MsG0580028395.01 | MsG0780038602.01 | 0.810473 | 1.132837e-50 | 6.835020e-48 |
| MsG0580028395.01 | MsG0780039252.01 | 0.804661 | 1.940352e-49 | 1.006240e-46 |
| MsG0580028395.01 | MsG0780039443.01 | 0.825863 | 3.715966e-54 | 3.428617e-51 |
| MsG0580028395.01 | MsG0780040057.01 | 0.800259 | 1.567598e-48 | 7.265982e-46 |
| MsG0580028395.01 | MsG0780040576.01 | -0.801243 | 9.869003e-49 | 4.690145e-46 |
| MsG0580028395.01 | MsG0780040704.01 | 0.809400 | 1.927624e-50 | 1.130666e-47 |
| MsG0580028395.01 | MsG0880041836.01 | 0.800524 | 1.384228e-48 | 6.459333e-46 |
| MsG0580028395.01 | MsG0880042698.01 | 0.814650 | 1.383113e-51 | 9.333814e-49 |
| MsG0580028395.01 | MsG0880043480.01 | 0.803047 | 4.200887e-49 | 2.089881e-46 |
| MsG0580028395.01 | MsG0880044574.01 | 0.803444 | 3.475351e-49 | 1.746737e-46 |
| MsG0580028395.01 | MsG0880045372.01 | 0.803326 | 3.677519e-49 | 1.842649e-46 |
| MsG0580028395.01 | MsG0880045639.01 | 0.819900 | 9.107789e-53 | 7.099878e-50 |
| MsG0580028395.01 | MsG0880045895.01 | 0.823676 | 1.218117e-53 | 1.056052e-50 |
| MsG0580028395.01 | MsG0880046012.01 | 0.802274 | 6.062544e-49 | 2.957422e-46 |
| MsG0280008377.01 | MsG0580028395.01 | 0.836423 | 9.439240e-57 | 1.189046e-53 |
| MsG0280008615.01 | MsG0580028395.01 | 0.817407 | 3.350598e-52 | 2.438086e-49 |
| MsG0280009748.01 | MsG0580028395.01 | 0.802886 | 4.534621e-49 | 2.246800e-46 |
| MsG0280010443.01 | MsG0580028395.01 | 0.823288 | 1.501162e-53 | 1.287074e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028395.01.T01 | MTR_5g070100 | 77.811 | 338 | 64 | 2 | 8 | 334 | 56 | 393 | 3.45e-168 | 473 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0580028395.01.T01 | AT3G47120 | 47.200 | 250 | 98 | 5 | 4 | 248 | 52 | 272 | 2.20e-58 | 191 |
| MsG0580028395.01.T01 | AT3G47120 | 67.717 | 127 | 39 | 1 | 4 | 128 | 52 | 178 | 4.46e-55 | 184 |
Find 72 sgRNAs with CRISPR-Local
Find 121 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACATCAGAAACTCTTGATT+TGG | 0.235017 | 5:+79928954 | None:intergenic |
| GAATCTCTATCTCTAGTTTC+TGG | 0.270732 | 5:+79929276 | None:intergenic |
| GAGGCAGAATGTTGATGATT+TGG | 0.271899 | 5:-79928911 | MsG0580028395.01.T01:CDS |
| CCTCAATTGCCACTACCTTT+TGG | 0.280056 | 5:+79928720 | None:intergenic |
| GTGATAACGACAATGCAAAA+TGG | 0.295444 | 5:-79929365 | MsG0580028395.01.T01:CDS |
| CAAGAGAAACACATGGTAAC+AGG | 0.315988 | 5:-79928879 | MsG0580028395.01.T01:CDS |
| GACGTGTACATTCCCCTCTT+TGG | 0.322526 | 5:+79930022 | None:intergenic |
| CATCTCATTGTCACGGGCTC+TGG | 0.328905 | 5:+79929248 | None:intergenic |
| CTAGTTTCTGGAATGCGATT+TGG | 0.338231 | 5:+79929288 | None:intergenic |
| AGGCAGAATGTTGATGATTT+GGG | 0.345105 | 5:-79928910 | MsG0580028395.01.T01:CDS |
| CAAAGCACTAATCTTGCTAT+TGG | 0.367902 | 5:-79930531 | MsG0580028395.01.T01:intron |
| TCTTCCCTTCTATAATCTCT+TGG | 0.371540 | 5:+79929015 | None:intergenic |
| CTGAGCCAAGAGATTATAGA+AGG | 0.374665 | 5:-79929020 | MsG0580028395.01.T01:CDS |
| ACATCAGAAACTCTTGATTT+GGG | 0.376361 | 5:+79928955 | None:intergenic |
| CAAGGAATGGTTATGATGTT+AGG | 0.382316 | 5:-79929047 | MsG0580028395.01.T01:CDS |
| TTGTAGAGAGCTGCAAATAC+TGG | 0.385773 | 5:-79929393 | MsG0580028395.01.T01:intron |
| AAAAGAAAGCGAAGCAGAAA+AGG | 0.391410 | 5:-79930071 | MsG0580028395.01.T01:CDS |
| CTTCTATAATCTCTTGGCTC+AGG | 0.450248 | 5:+79929021 | None:intergenic |
| AGATGATCTGAATGGAGTTC+AGG | 0.453763 | 5:-79930157 | MsG0580028395.01.T01:CDS |
| TCATCGTCTTTATAGTCTCT+TGG | 0.457550 | 5:+79929120 | None:intergenic |
| CTTGTTAGAGACAAAGGTAC+TGG | 0.467775 | 5:-79930594 | MsG0580028395.01.T01:CDS |
| TTTGTTGATCTTCATATGCT+AGG | 0.468033 | 5:+79930550 | None:intergenic |
| TGATAACGACAATGCAAAAT+GGG | 0.468755 | 5:-79929364 | MsG0580028395.01.T01:CDS |
| GAGAGCTGCAAATACTGGTT+GGG | 0.469783 | 5:-79929388 | MsG0580028395.01.T01:CDS |
| GAGAAGAAAAGAGGTCCAAA+AGG | 0.476943 | 5:-79928735 | MsG0580028395.01.T01:CDS |
| TTTAGGTAGGAGTATTAGGG+TGG | 0.478263 | 5:-79930133 | MsG0580028395.01.T01:CDS |
| GTCAACAACCTCTCCATACC+TGG | 0.481438 | 5:+79930623 | None:intergenic |
| TTCAAGAAAGAAAGAAGGTA+TGG | 0.499958 | 5:-79929321 | MsG0580028395.01.T01:CDS |
| TGGGATAATAACAAATATGA+TGG | 0.501395 | 5:-79929345 | MsG0580028395.01.T01:CDS |
| GAGATTATAGAAGGGAAGAC+AGG | 0.508629 | 5:-79929011 | MsG0580028395.01.T01:CDS |
| CAAAGGTACTGGAAAATCAA+AGG | 0.512659 | 5:-79930583 | MsG0580028395.01.T01:CDS |
| TTTGGTGATATATCCAGGTA+TGG | 0.514360 | 5:-79930636 | MsG0580028395.01.T01:CDS |
| AGATGGCGAGGATAAATTTG+TGG | 0.515150 | 5:-79929178 | MsG0580028395.01.T01:CDS |
| TCATCAACATTCTGCCTCCT+CGG | 0.515662 | 5:+79928916 | None:intergenic |
| GGGGAATGTACACGTCGAGC+TGG | 0.518184 | 5:-79930015 | MsG0580028395.01.T01:CDS |
| CTAATTCCATCTCATTGTCA+CGG | 0.528843 | 5:+79929241 | None:intergenic |
| GATGGCGAGGATAAATTTGT+GGG | 0.531808 | 5:-79929177 | MsG0580028395.01.T01:CDS |
| AGACGACCAATCCAATAGAA+AGG | 0.535898 | 5:-79929220 | MsG0580028395.01.T01:CDS |
| AAAGGTACTGGAAAATCAAA+GGG | 0.537719 | 5:-79930582 | MsG0580028395.01.T01:CDS |
| AAAGAAAGCGAAGCAGAAAA+GGG | 0.540887 | 5:-79930070 | MsG0580028395.01.T01:CDS |
| GAAGTATAAAACGATGGAAG+AGG | 0.542792 | 5:-79930100 | MsG0580028395.01.T01:CDS |
| TGTGTCTCAGATGATCTGAA+TGG | 0.546682 | 5:-79930165 | MsG0580028395.01.T01:intron |
| TTTGTCGAGCTTTCCAAAGA+GGG | 0.554988 | 5:-79930035 | MsG0580028395.01.T01:CDS |
| AGAGAGCTGCAAATACTGGT+TGG | 0.561675 | 5:-79929389 | MsG0580028395.01.T01:CDS |
| CTGACCGAAGAGAAGAAAAG+AGG | 0.567918 | 5:-79928744 | MsG0580028395.01.T01:CDS |
| GTTAATCTTGTTAGAGACAA+AGG | 0.568944 | 5:-79930600 | MsG0580028395.01.T01:CDS |
| AAAAGAGGTCCAAAAGGTAG+TGG | 0.570632 | 5:-79928729 | None:intergenic |
| TAATTCCATCTCATTGTCAC+GGG | 0.571708 | 5:+79929242 | None:intergenic |
| ATGGTTTCAAGAAAGAAAGA+AGG | 0.574883 | 5:-79929326 | MsG0580028395.01.T01:CDS |
| CAGAGCCCGTGACAATGAGA+TGG | 0.578350 | 5:-79929247 | MsG0580028395.01.T01:CDS |
| GAAAGCGAAGCAGAAAAGGG+AGG | 0.583818 | 5:-79930067 | MsG0580028395.01.T01:CDS |
| GTTTGTCGAGCTTTCCAAAG+AGG | 0.590686 | 5:-79930036 | MsG0580028395.01.T01:CDS |
| AGAGCTGCAAATACTGGTTG+GGG | 0.591634 | 5:-79929387 | MsG0580028395.01.T01:CDS |
| GATCTGTTGTTTCTTGACCT+CGG | 0.592753 | 5:+79928814 | None:intergenic |
| AAGATGTTGCGAAGGCAAGA+TGG | 0.607367 | 5:-79929195 | MsG0580028395.01.T01:CDS |
| GAAAGGAAAAGATGTTGCGA+AGG | 0.609119 | 5:-79929203 | MsG0580028395.01.T01:CDS |
| GTTGCGAAGGCAAGATGGCG+AGG | 0.623733 | 5:-79929190 | MsG0580028395.01.T01:CDS |
| TTGTCGAGCTTTCCAAAGAG+GGG | 0.627529 | 5:-79930034 | MsG0580028395.01.T01:CDS |
| TTTCTGGAATGCGATTTGGT+TGG | 0.628909 | 5:+79929292 | None:intergenic |
| AAGAGAAACACATGGTAACA+GGG | 0.629789 | 5:-79928878 | MsG0580028395.01.T01:CDS |
| GGAAAGCTCGACAAACACCA+TGG | 0.636225 | 5:+79930043 | None:intergenic |
| ATTATAGAAGGGAAGACAGG+AGG | 0.643918 | 5:-79929008 | MsG0580028395.01.T01:CDS |
| AAGCAGAAAAGGGAGGCCCA+TGG | 0.657793 | 5:-79930060 | MsG0580028395.01.T01:CDS |
| GAAAGCTCGACAAACACCAT+GGG | 0.661470 | 5:+79930044 | None:intergenic |
| TGAGCCAAGAGATTATAGAA+GGG | 0.663855 | 5:-79929019 | MsG0580028395.01.T01:CDS |
| TGATATATCCAGGTATGGAG+AGG | 0.666989 | 5:-79930631 | MsG0580028395.01.T01:CDS |
| TGTTGAGAAGTATAAAACGA+TGG | 0.669349 | 5:-79930106 | MsG0580028395.01.T01:CDS |
| AAGACGATGAATTTGAACAT+CGG | 0.691544 | 5:-79929107 | MsG0580028395.01.T01:CDS |
| AAGAAGATAAAAGACCGAGG+AGG | 0.701030 | 5:-79928930 | MsG0580028395.01.T01:CDS |
| TTAAAGAAGATAAAAGACCG+AGG | 0.706726 | 5:-79928933 | MsG0580028395.01.T01:CDS |
| AGCAAGTCAAGAGAAACACA+TGG | 0.739682 | 5:-79928886 | MsG0580028395.01.T01:CDS |
| CTAACGATGAAGTAGTGCCG+AGG | 0.743552 | 5:-79928831 | MsG0580028395.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATGTTCAAATTTTCATAATA+AGG | + | Chr5:79929521-79929540 | None:intergenic | 15.0% |
| !! | AGTAAGAATTCAAAATATTG+TGG | + | Chr5:79929440-79929459 | None:intergenic | 20.0% |
| !!! | TTGTAGTTTTTTTACATTCA+AGG | - | Chr5:79929083-79929102 | MsG0580028395.01.T01:CDS | 20.0% |
| !!! | TTTGATTATCTGTTTTTTCA+GGG | - | Chr5:79929157-79929176 | MsG0580028395.01.T01:CDS | 20.0% |
| ! | AGAACTGAAAACATACAATA+AGG | + | Chr5:79929947-79929966 | None:intergenic | 25.0% |
| ! | CAAAGAGTAAATAGTTACTT+TGG | + | Chr5:79929141-79929160 | None:intergenic | 25.0% |
| ! | GAAGAAAAAAAATCAAGGAA+TGG | - | Chr5:79930320-79930339 | MsG0580028395.01.T01:intron | 25.0% |
| ! | TACTTACAAAAGACACATTA+GGG | + | Chr5:79928953-79928972 | None:intergenic | 25.0% |
| ! | TGAGAGAAGAAAAAAAATCA+AGG | - | Chr5:79930315-79930334 | MsG0580028395.01.T01:intron | 25.0% |
| ! | TGGGATAATAACAAATATGA+TGG | - | Chr5:79930035-79930054 | MsG0580028395.01.T01:CDS | 25.0% |
| ! | TTACTTACAAAAGACACATT+AGG | + | Chr5:79928954-79928973 | None:intergenic | 25.0% |
| !! | CTATCTTTTGCTAACATAAA+AGG | - | Chr5:79929680-79929699 | MsG0580028395.01.T01:intron | 25.0% |
| !! | GATATTTGTTTCTTCTTTGT+AGG | - | Chr5:79929784-79929803 | MsG0580028395.01.T01:intron | 25.0% |
| !! | GTCTTTTGTAAGTAATTGTA+TGG | - | Chr5:79928959-79928978 | MsG0580028395.01.T01:CDS | 25.0% |
| !!! | CTTTGATTATCTGTTTTTTC+AGG | - | Chr5:79929156-79929175 | MsG0580028395.01.T01:CDS | 25.0% |
| !!! | TTGTAATTTTGATACATCCA+GGG | + | Chr5:79928923-79928942 | None:intergenic | 25.0% |
| !!! | TTTGTAATTTTGATACATCC+AGG | + | Chr5:79928924-79928943 | None:intergenic | 25.0% |
| AAAACATACAATAAGGTAGC+TGG | + | Chr5:79929902-79929921 | None:intergenic | 30.0% | |
| AACATCAGAAACTCTTGATT+TGG | + | Chr5:79930429-79930448 | None:intergenic | 30.0% | |
| AAGACGATGAATTTGAACAT+CGG | - | Chr5:79930273-79930292 | MsG0580028395.01.T01:intron | 30.0% | |
| ACATCAGAAACTCTTGATTT+GGG | + | Chr5:79930428-79930447 | None:intergenic | 30.0% | |
| ATGGTTTCAAGAAAGAAAGA+AGG | - | Chr5:79930054-79930073 | MsG0580028395.01.T01:CDS | 30.0% | |
| CATACAATAAGGTAGCTATA+AGG | + | Chr5:79929898-79929917 | None:intergenic | 30.0% | |
| CTCTCTACAAAAGAATAACA+CGG | + | Chr5:79929977-79929996 | None:intergenic | 30.0% | |
| GAATTCAAAATATTGTGGCA+TGG | + | Chr5:79929435-79929454 | None:intergenic | 30.0% | |
| GCATCTTTCAATAGTCAATT+TGG | + | Chr5:79929049-79929068 | None:intergenic | 30.0% | |
| GTTAATCTTGTTAGAGACAA+AGG | - | Chr5:79928780-79928799 | MsG0580028395.01.T01:CDS | 30.0% | |
| GTTGTAGAGAATATTTGCTT+AGG | - | Chr5:79929649-79929668 | MsG0580028395.01.T01:intron | 30.0% | |
| TTAAAGAAGATAAAAGACCG+AGG | - | Chr5:79930447-79930466 | MsG0580028395.01.T01:intron | 30.0% | |
| TTCAAGAAAGAAAGAAGGTA+TGG | - | Chr5:79930059-79930078 | MsG0580028395.01.T01:CDS | 30.0% | |
| TTTGTTGATCTTCATATGCT+AGG | + | Chr5:79928833-79928852 | None:intergenic | 30.0% | |
| ! | ACCTTATTGTATGTTTTCAC+CGG | - | Chr5:79929905-79929924 | MsG0580028395.01.T01:intron | 30.0% |
| ! | CAACATCTTTTCCTTTCTAT+TGG | + | Chr5:79930174-79930193 | None:intergenic | 30.0% |
| ! | TCTCTTTTCTTCTCTTCTAA+TGG | + | Chr5:79930240-79930259 | None:intergenic | 30.0% |
| ! | TCTTTTCCTTTCTATTGGAT+TGG | + | Chr5:79930169-79930188 | None:intergenic | 30.0% |
| ! | TGATAACGACAATGCAAAAT+GGG | - | Chr5:79930016-79930035 | MsG0580028395.01.T01:CDS | 30.0% |
| ! | TGTTCATATGCAATGCATTT+TGG | - | Chr5:79929574-79929593 | MsG0580028395.01.T01:intron | 30.0% |
| ! | TGTTGAGAAGTATAAAACGA+TGG | - | Chr5:79929274-79929293 | MsG0580028395.01.T01:CDS | 30.0% |
| !! | AAAGGTACTGGAAAATCAAA+GGG | - | Chr5:79928798-79928817 | MsG0580028395.01.T01:CDS | 30.0% |
| !! | AGGTGTTTTTGTTTGATTGT+GGG | - | Chr5:79929609-79929628 | MsG0580028395.01.T01:intron | 30.0% |
| !!! | ATTTTTGATTTTGCTATCCC+TGG | - | Chr5:79928903-79928922 | MsG0580028395.01.T01:CDS | 30.0% |
| !!! | CATTTTGGCTTATTTGAATC+AGG | - | Chr5:79929589-79929608 | MsG0580028395.01.T01:intron | 30.0% |
| !!! | GTTTTTTTGGTGATATATCC+AGG | - | Chr5:79928739-79928758 | MsG0580028395.01.T01:CDS | 30.0% |
| AAAAGAAAGCGAAGCAGAAA+AGG | - | Chr5:79929309-79929328 | MsG0580028395.01.T01:CDS | 35.0% | |
| AAAGAAAGCGAAGCAGAAAA+GGG | - | Chr5:79929310-79929329 | MsG0580028395.01.T01:CDS | 35.0% | |
| AAGAGAAACACATGGTAACA+GGG | - | Chr5:79930502-79930521 | MsG0580028395.01.T01:intron | 35.0% | |
| AAGCCAATTATTGAAGTTGC+AGG | + | Chr5:79929755-79929774 | None:intergenic | 35.0% | |
| CAAGGAATGGTTATGATGTT+AGG | - | Chr5:79930333-79930352 | MsG0580028395.01.T01:intron | 35.0% | |
| CTAATTCCATCTCATTGTCA+CGG | + | Chr5:79930142-79930161 | None:intergenic | 35.0% | |
| CTGAATTGCTCTGTAATGTT+TGG | - | Chr5:79929188-79929207 | MsG0580028395.01.T01:CDS | 35.0% | |
| GAAGTATAAAACGATGGAAG+AGG | - | Chr5:79929280-79929299 | MsG0580028395.01.T01:CDS | 35.0% | |
| GACAACAACACATACGTTTA+AGG | - | Chr5:79929114-79929133 | MsG0580028395.01.T01:CDS | 35.0% | |
| GGACCAAACTAACTAACAAA+AGG | - | Chr5:79929011-79929030 | MsG0580028395.01.T01:CDS | 35.0% | |
| GTTACGTTGAAAAAGAAACC+AGG | + | Chr5:79929817-79929836 | None:intergenic | 35.0% | |
| TAATTCCATCTCATTGTCAC+GGG | + | Chr5:79930141-79930160 | None:intergenic | 35.0% | |
| TCATCGTCTTTATAGTCTCT+TGG | + | Chr5:79930263-79930282 | None:intergenic | 35.0% | |
| TCCGGTGAAAACATACAATA+AGG | + | Chr5:79929909-79929928 | None:intergenic | 35.0% | |
| TCTTCCCTTCTATAATCTCT+TGG | + | Chr5:79930368-79930387 | None:intergenic | 35.0% | |
| TGAGCCAAGAGATTATAGAA+GGG | - | Chr5:79930361-79930380 | MsG0580028395.01.T01:intron | 35.0% | |
| ! | ACTAACAAAAGGCACATTTG+AGG | - | Chr5:79929022-79929041 | MsG0580028395.01.T01:CDS | 35.0% |
| ! | CAAAGCACTAATCTTGCTAT+TGG | - | Chr5:79928849-79928868 | MsG0580028395.01.T01:CDS | 35.0% |
| ! | GAATCTCTATCTCTAGTTTC+TGG | + | Chr5:79930107-79930126 | None:intergenic | 35.0% |
| ! | GTGATAACGACAATGCAAAA+TGG | - | Chr5:79930015-79930034 | MsG0580028395.01.T01:CDS | 35.0% |
| ! | GTGCCTTTTGTTAGTTAGTT+TGG | + | Chr5:79929017-79929036 | None:intergenic | 35.0% |
| ! | TTTGGTGATATATCCAGGTA+TGG | - | Chr5:79928744-79928763 | MsG0580028395.01.T01:CDS | 35.0% |
| !! | AGGCAGAATGTTGATGATTT+GGG | - | Chr5:79930470-79930489 | MsG0580028395.01.T01:intron | 35.0% |
| !! | CAAAGGTACTGGAAAATCAA+AGG | - | Chr5:79928797-79928816 | MsG0580028395.01.T01:CDS | 35.0% |
| !! | CAGGTGTTTTTGTTTGATTG+TGG | - | Chr5:79929608-79929627 | MsG0580028395.01.T01:intron | 35.0% |
| !!! | AGGTTTTAGGTAGGAGTATT+AGG | - | Chr5:79929243-79929262 | MsG0580028395.01.T01:CDS | 35.0% |
| !!! | GGTTTTAGGTAGGAGTATTA+GGG | - | Chr5:79929244-79929263 | MsG0580028395.01.T01:CDS | 35.0% |
| AAGAAGATAAAAGACCGAGG+AGG | - | Chr5:79930450-79930469 | MsG0580028395.01.T01:intron | 40.0% | |
| ACGCCTGCAACTTCAATAAT+TGG | - | Chr5:79929749-79929768 | MsG0580028395.01.T01:intron | 40.0% | |
| AGAAAAGAGGTCCAAAAGGT+AGG | - | Chr5:79930649-79930668 | MsG0580028395.01.T01:CDS | 40.0% | |
| AGACGACCAATCCAATAGAA+AGG | - | Chr5:79930160-79930179 | MsG0580028395.01.T01:intron | 40.0% | |
| AGATGATCTGAATGGAGTTC+AGG | - | Chr5:79929223-79929242 | MsG0580028395.01.T01:CDS | 40.0% | |
| AGATGGCGAGGATAAATTTG+TGG | - | Chr5:79930202-79930221 | MsG0580028395.01.T01:intron | 40.0% | |
| AGCAAGTCAAGAGAAACACA+TGG | - | Chr5:79930494-79930513 | MsG0580028395.01.T01:intron | 40.0% | |
| ATTATAGAAGGGAAGACAGG+AGG | - | Chr5:79930372-79930391 | MsG0580028395.01.T01:intron | 40.0% | |
| CAAGAGAAACACATGGTAAC+AGG | - | Chr5:79930501-79930520 | MsG0580028395.01.T01:intron | 40.0% | |
| CTGAGCCAAGAGATTATAGA+AGG | - | Chr5:79930360-79930379 | MsG0580028395.01.T01:intron | 40.0% | |
| CTTCTATAATCTCTTGGCTC+AGG | + | Chr5:79930362-79930381 | None:intergenic | 40.0% | |
| GAAAGGAAAAGATGTTGCGA+AGG | - | Chr5:79930177-79930196 | MsG0580028395.01.T01:intron | 40.0% | |
| GAGAAGAAAAGAGGTCCAAA+AGG | - | Chr5:79930645-79930664 | MsG0580028395.01.T01:CDS | 40.0% | |
| GAGATTATAGAAGGGAAGAC+AGG | - | Chr5:79930369-79930388 | MsG0580028395.01.T01:intron | 40.0% | |
| GATGGCGAGGATAAATTTGT+GGG | - | Chr5:79930203-79930222 | MsG0580028395.01.T01:intron | 40.0% | |
| TGATATATCCAGGTATGGAG+AGG | - | Chr5:79928749-79928768 | MsG0580028395.01.T01:CDS | 40.0% | |
| TGTGTCTCAGATGATCTGAA+TGG | - | Chr5:79929215-79929234 | MsG0580028395.01.T01:CDS | 40.0% | |
| TTGTAGAGAGCTGCAAATAC+TGG | - | Chr5:79929987-79930006 | MsG0580028395.01.T01:intron | 40.0% | |
| TTTGTCGAGCTTTCCAAAGA+GGG | - | Chr5:79929345-79929364 | MsG0580028395.01.T01:CDS | 40.0% | |
| ! | CTTGTTAGAGACAAAGGTAC+TGG | - | Chr5:79928786-79928805 | MsG0580028395.01.T01:CDS | 40.0% |
| ! | TGGACCTCTTTTCTTCTCTT+CGG | + | Chr5:79930643-79930662 | None:intergenic | 40.0% |
| !! | CTAGTTTCTGGAATGCGATT+TGG | + | Chr5:79930095-79930114 | None:intergenic | 40.0% |
| !! | CTGAATGGAGTTCAGGTTTT+AGG | - | Chr5:79929230-79929249 | MsG0580028395.01.T01:CDS | 40.0% |
| !! | GAGGCAGAATGTTGATGATT+TGG | - | Chr5:79930469-79930488 | MsG0580028395.01.T01:intron | 40.0% |
| !! | GATCTGTTGTTTCTTGACCT+CGG | + | Chr5:79930569-79930588 | None:intergenic | 40.0% |
| !! | TTTAGGTAGGAGTATTAGGG+TGG | - | Chr5:79929247-79929266 | MsG0580028395.01.T01:CDS | 40.0% |
| !! | TTTCTGGAATGCGATTTGGT+TGG | + | Chr5:79930091-79930110 | None:intergenic | 40.0% |
| !!! | ATGGAGTTCAGGTTTTAGGT+AGG | - | Chr5:79929234-79929253 | MsG0580028395.01.T01:CDS | 40.0% |
| AAGATGTTGCGAAGGCAAGA+TGG | - | Chr5:79930185-79930204 | MsG0580028395.01.T01:intron | 45.0% | |
| AGAGAGCTGCAAATACTGGT+TGG | - | Chr5:79929991-79930010 | MsG0580028395.01.T01:CDS | 45.0% | |
| AGGTAGCTGGACAAATCATC+CGG | + | Chr5:79929927-79929946 | None:intergenic | 45.0% | |
| CTGACCGAAGAGAAGAAAAG+AGG | - | Chr5:79930636-79930655 | MsG0580028395.01.T01:CDS | 45.0% | |
| GAAAGCTCGACAAACACCAT+GGG | + | Chr5:79929339-79929358 | None:intergenic | 45.0% | |
| GCTAATAGAAGACACGTTCG+AGG | - | Chr5:79928990-79929009 | MsG0580028395.01.T01:CDS | 45.0% | |
| GTTTGTCGAGCTTTCCAAAG+AGG | - | Chr5:79929344-79929363 | MsG0580028395.01.T01:CDS | 45.0% | |
| TCATCAACATTCTGCCTCCT+CGG | + | Chr5:79930467-79930486 | None:intergenic | 45.0% | |
| TTGTCGAGCTTTCCAAAGAG+GGG | - | Chr5:79929346-79929365 | MsG0580028395.01.T01:CDS | 45.0% | |
| ! | AGAGCTGCAAATACTGGTTG+GGG | - | Chr5:79929993-79930012 | MsG0580028395.01.T01:CDS | 45.0% |
| ! | GAGAGCTGCAAATACTGGTT+GGG | - | Chr5:79929992-79930011 | MsG0580028395.01.T01:CDS | 45.0% |
| !!! | AAAATATATTTTAGAATTAT+AGG | + | Chr5:79928888-79928907 | None:intergenic | 5.0% |
| CTAACGATGAAGTAGTGCCG+AGG | - | Chr5:79930549-79930568 | MsG0580028395.01.T01:CDS | 50.0% | |
| GAAAGCGAAGCAGAAAAGGG+AGG | - | Chr5:79929313-79929332 | MsG0580028395.01.T01:CDS | 50.0% | |
| GACGTGTACATTCCCCTCTT+TGG | + | Chr5:79929361-79929380 | None:intergenic | 50.0% | |
| GGAAAGCTCGACAAACACCA+TGG | + | Chr5:79929340-79929359 | None:intergenic | 50.0% | |
| GTCAACAACCTCTCCATACC+TGG | + | Chr5:79928760-79928779 | None:intergenic | 50.0% | |
| !! | TTCTTTGTAGGCTTGCTGCC+TGG | - | Chr5:79929796-79929815 | MsG0580028395.01.T01:intron | 50.0% |
| AAGCAGAAAAGGGAGGCCCA+TGG | - | Chr5:79929320-79929339 | MsG0580028395.01.T01:CDS | 55.0% | |
| CAGAGCCCGTGACAATGAGA+TGG | - | Chr5:79930133-79930152 | MsG0580028395.01.T01:CDS | 55.0% | |
| CATCTCATTGTCACGGGCTC+TGG | + | Chr5:79930135-79930154 | None:intergenic | 55.0% | |
| GGGGAATGTACACGTCGAGC+TGG | - | Chr5:79929365-79929384 | MsG0580028395.01.T01:CDS | 60.0% | |
| GTTGCGAAGGCAAGATGGCG+AGG | - | Chr5:79930190-79930209 | MsG0580028395.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr5 | gene | 79928732 | 79930670 | 79928732 | ID=MsG0580028395.01;Name=MsG0580028395.01 |
| Chr5 | mRNA | 79928732 | 79930670 | 79928732 | ID=MsG0580028395.01.T01;Parent=MsG0580028395.01;Name=MsG0580028395.01.T01;_AED=0.48;_eAED=0.48;_QI=0|0|0|1|1|1|3|0|334 |
| Chr5 | exon | 79930532 | 79930670 | 79930532 | ID=MsG0580028395.01.T01:exon:5577;Parent=MsG0580028395.01.T01 |
| Chr5 | exon | 79929990 | 79930177 | 79929990 | ID=MsG0580028395.01.T01:exon:5576;Parent=MsG0580028395.01.T01 |
| Chr5 | exon | 79928732 | 79929409 | 79928732 | ID=MsG0580028395.01.T01:exon:5575;Parent=MsG0580028395.01.T01 |
| Chr5 | CDS | 79930532 | 79930670 | 79930532 | ID=MsG0580028395.01.T01:cds;Parent=MsG0580028395.01.T01 |
| Chr5 | CDS | 79929990 | 79930177 | 79929990 | ID=MsG0580028395.01.T01:cds;Parent=MsG0580028395.01.T01 |
| Chr5 | CDS | 79928732 | 79929409 | 79928732 | ID=MsG0580028395.01.T01:cds;Parent=MsG0580028395.01.T01 |
| Gene Sequence |
| Protein sequence |
