AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180006257.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006257.01.T01 MTR_1g116810 97.153 281 4 1 1 277 1 281 0.0 567
MsG0180006257.01.T01 MTR_5g022960 47.253 273 122 7 9 272 24 283 3.76e-72 223
MsG0180006257.01.T01 MTR_3g114670 52.607 211 82 3 72 271 70 273 4.10e-70 218
MsG0180006257.01.T01 MTR_8g074810 53.110 209 86 3 72 272 68 272 1.22e-69 216
MsG0180006257.01.T01 MTR_8g074830 52.632 209 87 3 72 272 71 275 3.87e-68 213
MsG0180006257.01.T01 MTR_8g074890 48.444 225 96 4 56 272 59 271 7.01e-68 212
MsG0180006257.01.T01 MTR_8g074880 49.519 208 93 3 72 271 116 319 3.05e-63 202
MsG0180006257.01.T01 MTR_6g009440 48.558 208 90 3 74 271 54 254 7.92e-62 197
MsG0180006257.01.T01 MTR_4g118560 47.418 213 96 3 70 271 36 243 1.26e-59 192
MsG0180006257.01.T01 MTR_2g020800 45.794 214 100 3 69 271 38 246 8.44e-57 184
MsG0180006257.01.T01 MTR_2g020800 45.370 216 100 3 69 271 38 248 1.61e-56 184
MsG0180006257.01.T01 MTR_8g074870 46.411 209 86 5 72 272 29 219 9.77e-56 179
MsG0180006257.01.T01 MTR_3g114610 48.259 201 101 2 72 271 97 295 9.08e-55 179
MsG0180006257.01.T01 MTR_3g114590 49.000 200 100 1 72 271 65 262 1.79e-54 186
MsG0180006257.01.T01 MTR_3g114590 42.935 184 88 2 88 271 293 459 1.33e-33 129
MsG0180006257.01.T01 MTR_5g016090 37.500 248 144 5 33 276 51 291 1.79e-46 157
MsG0180006257.01.T01 MTR_4g095370 37.553 237 137 4 41 273 61 290 6.11e-43 148
MsG0180006257.01.T01 MTR_5g022960 45.550 191 92 5 9 198 24 203 1.11e-42 145
MsG0180006257.01.T01 MTR_6g053720 34.500 200 111 5 74 271 57 238 2.90e-30 115
MsG0180006257.01.T01 MTR_3g051200 45.669 127 66 2 86 212 25 148 6.45e-25 97.8
MsG0180006257.01.T01 MTR_4g095370 34.043 141 84 3 41 179 61 194 7.32e-17 77.4
MsG0180006257.01.T01 MTR_4g095370 33.333 153 93 3 41 191 61 206 7.60e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180006257.01.T01 AT2G43080 70.000 280 71 3 4 273 3 279 2.14e-146 412
MsG0180006257.01.T01 AT1G20270 57.212 208 77 3 72 271 77 280 1.25e-72 224
MsG0180006257.01.T01 AT4G35810 50.206 243 101 5 39 271 52 284 5.54e-71 220
MsG0180006257.01.T01 AT4G35810 50.206 243 101 5 39 271 52 284 5.54e-71 220
MsG0180006257.01.T01 AT2G43080 60.989 182 58 3 4 175 3 181 7.90e-71 216
MsG0180006257.01.T01 AT5G66060 48.963 241 98 4 43 272 57 283 1.04e-69 217
MsG0180006257.01.T01 AT2G17720 52.857 210 83 4 72 271 81 284 7.03e-67 210
MsG0180006257.01.T01 AT3G28480 44.712 208 98 3 74 271 59 259 2.15e-57 186
MsG0180006257.01.T01 AT3G06300 46.698 212 99 3 70 271 37 244 9.02e-57 184
MsG0180006257.01.T01 AT3G28490 47.087 206 97 4 74 271 35 236 1.28e-56 184
MsG0180006257.01.T01 AT5G18900 45.070 213 101 3 70 271 36 243 7.73e-55 179
MsG0180006257.01.T01 AT3G28480 41.121 214 105 4 74 271 59 267 3.43e-47 160
MsG0180006257.01.T01 AT5G66060 50.588 170 73 3 43 212 57 215 6.93e-46 154
MsG0180006257.01.T01 AT1G20270 59.055 127 50 1 72 198 77 201 3.73e-43 146
MsG0180006257.01.T01 AT1G20270 59.055 127 50 1 72 198 77 201 3.73e-43 146
MsG0180006257.01.T01 AT4G35820 45.833 192 78 4 72 255 89 262 1.12e-42 147
MsG0180006257.01.T01 AT4G33910 38.428 229 130 4 48 272 61 282 3.10e-42 146
MsG0180006257.01.T01 AT2G23096 34.466 206 129 3 74 276 71 273 2.46e-34 125
MsG0180006257.01.T01 AT4G25600 29.694 229 130 6 55 277 40 243 2.23e-22 94.4
MsG0180006257.01.T01 AT4G25600 29.703 202 114 5 79 277 3 179 1.64e-18 82.4
MsG0180006257.01.T01 AT4G25600 29.703 202 114 5 79 277 6 182 1.70e-18 82.4
MsG0180006257.01.T01 AT4G25600 29.703 202 114 5 79 277 15 191 1.73e-18 82.8

Find 83 sgRNAs with CRISPR-Local

Find 218 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTACAATGCTTATGTATTT+AGG 0.204792 1:-101906751 MsG0180006257.01.T01:CDS
GTCACAATCGGAATGATTAT+TGG 0.231053 1:-101907468 MsG0180006257.01.T01:intron
ACGAGGAATGTGATTATCTT+AGG 0.235744 1:-101907158 MsG0180006257.01.T01:CDS
TCTCAAATTCCAATTGAAAA+TGG 0.255513 1:-101906976 MsG0180006257.01.T01:CDS
GAAGTTGTTGTTGTTGTAAA+TGG 0.279988 1:+101907309 None:intergenic
AGCACAGCATTTCCTTTAAC+TGG 0.282461 1:+101905407 None:intergenic
GGAGGATGCCCGGTACTTGC+TGG 0.290409 1:-101905208 MsG0180006257.01.T01:CDS
GTCGTCATTATTATAACCTC+TGG 0.348565 1:+101907272 None:intergenic
CGCATGATTTAGCTAGCTTT+CGG 0.353098 1:-101905143 MsG0180006257.01.T01:exon
TTATGTGTGAAACCAGTTAA+AGG 0.389095 1:-101905419 MsG0180006257.01.T01:CDS
ATTTATTAACATGGATCCTT+GGG 0.391533 1:-101907626 MsG0180006257.01.T01:five_prime_UTR
CATTTATTAACATGGATCCT+TGG 0.391830 1:-101907627 MsG0180006257.01.T01:five_prime_UTR
AGTGATGTCAGAACAAGTTC+TGG 0.417022 1:-101907069 MsG0180006257.01.T01:CDS
GGAGACCAACTAAGGACTTC+AGG 0.418550 1:+101907213 None:intergenic
CGAGGAATGTGATTATCTTA+GGG 0.422123 1:-101907157 MsG0180006257.01.T01:CDS
TGCAGGTGCTCTCTCTCAAT+TGG 0.426323 1:-101907361 MsG0180006257.01.T01:intron
CTTCTCACTTTCGTCACAAT+CGG 0.443635 1:-101907480 MsG0180006257.01.T01:CDS
GATGGTTTGATCTATATCAT+TGG 0.448253 1:-101904964 MsG0180006257.01.T01:three_prime_UTR
TGGTTTCACACATAACCCTT+TGG 0.454448 1:+101905427 None:intergenic
CATCCTCCATGCACACTATC+CGG 0.458292 1:+101905223 None:intergenic
CACTTCTCCCCAGCAAGTAC+CGG 0.463904 1:+101905199 None:intergenic
GAGGATGCCCGGTACTTGCT+GGG 0.470338 1:-101905207 MsG0180006257.01.T01:CDS
TATTTAGGTGACAATGTTGA+GGG 0.478530 1:-101906736 MsG0180006257.01.T01:CDS
TCGTCATTATTATAACCTCT+GGG 0.483951 1:+101907273 None:intergenic
AAAGAAAGAGATTGACTGAC+TGG 0.485358 1:-101907559 MsG0180006257.01.T01:five_prime_UTR
TTAGCTAGCTTTCGGTGGGT+AGG 0.486072 1:-101905135 MsG0180006257.01.T01:three_prime_UTR
TTAAACCTGAAGTCCTTAGT+TGG 0.490970 1:-101907218 MsG0180006257.01.T01:CDS
GTCGATGCAAACACAGGAAA+GGG 0.501803 1:-101907099 MsG0180006257.01.T01:CDS
TAGCTAGCTTTCGGTGGGTA+GGG 0.504284 1:-101905134 MsG0180006257.01.T01:three_prime_UTR
GAAGCACAAATCTTACGCCT+TGG 0.505360 1:-101907246 MsG0180006257.01.T01:CDS
CCGGCGATGAAGATTGTGTT+CGG 0.507131 1:-101907504 MsG0180006257.01.T01:CDS
AGGTGACAATGTTGAGGGAG+GGG 0.507663 1:-101906731 MsG0180006257.01.T01:CDS
GAGAGCTTATGCAAGTCCTT+AGG 0.507911 1:-101906954 MsG0180006257.01.T01:CDS
TTATGAAGTAAAATAATTCG+TGG 0.516165 1:+101907192 None:intergenic
TGATATTAATACACAATGGA+TGG 0.527767 1:-101904982 MsG0180006257.01.T01:three_prime_UTR
TGGTATTATCAGGGACTGGA+TGG 0.528484 1:-101905256 MsG0180006257.01.T01:intron
AGTTTCGATCAATAAAATAC+AGG 0.529356 1:-101905013 MsG0180006257.01.T01:three_prime_UTR
TAGGTGACAATGTTGAGGGA+GGG 0.530460 1:-101906732 MsG0180006257.01.T01:CDS
ATGATTTAGCTAGCTTTCGG+TGG 0.531891 1:-101905140 MsG0180006257.01.T01:exon
ACTGGATGGACAGTCAGATC+CGG 0.531985 1:-101905242 MsG0180006257.01.T01:CDS
ACTTTGAAGTGAAAATATGA+AGG 0.535155 1:+101905085 None:intergenic
CGGTACTTGCTGGGGAGAAG+TGG 0.535804 1:-101905198 MsG0180006257.01.T01:CDS
ATGGTTTGATCTATATCATT+GGG 0.540700 1:-101904963 MsG0180006257.01.T01:three_prime_UTR
TAGTGTGCATGGAGGATGCC+CGG 0.552060 1:-101905218 MsG0180006257.01.T01:CDS
TTAGGTGACAATGTTGAGGG+AGG 0.555757 1:-101906733 MsG0180006257.01.T01:CDS
GTATTTAGGTGACAATGTTG+AGG 0.557593 1:-101906737 MsG0180006257.01.T01:CDS
CTTTGAAGTGAAAATATGAA+GGG 0.561377 1:+101905086 None:intergenic
TCCTTGGGAAAATGAATGAA+AGG 0.561585 1:-101907611 MsG0180006257.01.T01:five_prime_UTR
GTGGTGGGAAATTAACCAAA+GGG 0.569757 1:-101905442 MsG0180006257.01.T01:CDS
AATCGAATCGATGAGTCCTC+CGG 0.571781 1:-101907523 MsG0180006257.01.T01:exon
TAAGCATTGTAGCTATTCGC+TGG 0.573513 1:+101906761 None:intergenic
TAATTCGTGGAGACCAACTA+AGG 0.573940 1:+101907205 None:intergenic
CGTCGATGCAAACACAGGAA+AGG 0.581169 1:-101907100 MsG0180006257.01.T01:CDS
AGAGAAGACATTTATTAACA+TGG 0.582619 1:-101907635 None:intergenic
ACTGATTCTTCTCATACCTA+AGG 0.583409 1:+101906938 None:intergenic
TCAGATCCGGATAGTGTGCA+TGG 0.584101 1:-101905229 MsG0180006257.01.T01:CDS
ACTTCTCCCCAGCAAGTACC+GGG 0.590424 1:+101905200 None:intergenic
CCGAACACAATCTTCATCGC+CGG 0.591398 1:+101907504 None:intergenic
GGTCGGCTACAAAGTGGATG+AGG 0.597597 1:-101905177 MsG0180006257.01.T01:CDS
CTTCAGGTTTAACATATCCA+AGG 0.599046 1:+101907229 None:intergenic
CAGTTCAATTTGAAGCGTGG+TGG 0.599421 1:-101906784 MsG0180006257.01.T01:CDS
ATATGAAGGGGAAAACCCCT+TGG 0.600022 1:+101905099 None:intergenic
AATCACATTCCTCGTAGCTG+AGG 0.604915 1:+101907166 None:intergenic
TGATTTAGCTAGCTTTCGGT+GGG 0.607907 1:-101905139 MsG0180006257.01.T01:three_prime_UTR
TCAGATGAATGTAGCTGTGG+TGG 0.613560 1:-101905458 MsG0180006257.01.T01:CDS
AGGATGCCCGGTACTTGCTG+GGG 0.623094 1:-101905206 MsG0180006257.01.T01:CDS
AACACAATCTTCATCGCCGG+AGG 0.630657 1:+101907507 None:intergenic
AGAAGTGGTCGGCTACAAAG+TGG 0.632725 1:-101905183 MsG0180006257.01.T01:CDS
GAGGAATGTGATTATCTTAG+GGG 0.634805 1:-101907156 MsG0180006257.01.T01:CDS
TAACAGTTCAATTTGAAGCG+TGG 0.636945 1:-101906787 MsG0180006257.01.T01:intron
TGTGGTGGGAAATTAACCAA+AGG 0.637747 1:-101905443 MsG0180006257.01.T01:CDS
CAGATGAATGTAGCTGTGGT+GGG 0.637801 1:-101905457 MsG0180006257.01.T01:CDS
GGTTCAGATGAATGTAGCTG+TGG 0.641033 1:-101905461 MsG0180006257.01.T01:CDS
TTTGAAGTGAAAATATGAAG+GGG 0.641588 1:+101905087 None:intergenic
ACTTGCTGGGGAGAAGTGGT+CGG 0.648554 1:-101905194 MsG0180006257.01.T01:CDS
AGGGGAAACGCATTTCCCAT+CGG 0.656658 1:-101906713 MsG0180006257.01.T01:intron
ATAGTATAAATATTAAATAG+CGG 0.658559 1:-101905038 MsG0180006257.01.T01:three_prime_UTR
TGTATGATATTAATACACAA+TGG 0.662040 1:-101904986 MsG0180006257.01.T01:three_prime_UTR
CGTCATTATTATAACCTCTG+GGG 0.664194 1:+101907274 None:intergenic
ACTGTCGTCGATGCAAACAC+AGG 0.669566 1:-101907105 MsG0180006257.01.T01:CDS
GATCCGGATAGTGTGCATGG+AGG 0.746880 1:-101905226 MsG0180006257.01.T01:CDS
TCATAACTTCCTCAGCTACG+AGG 0.747861 1:-101907175 MsG0180006257.01.T01:CDS
TCAAGATCACTACTCCCCAG+AGG 0.760039 1:-101907288 MsG0180006257.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAAAAAAAAAAAAAAAAA+GGG + Chr1:101906160-101906179 None:intergenic 0.0%
!! TTAAAAAAAAAAAAAAAAAA+AGG + Chr1:101906161-101906180 None:intergenic 0.0%
!! ATAGTATAAATATTAAATAG+CGG - Chr1:101907545-101907564 MsG0180006257.01.T01:five_prime_UTR 10.0%
!!! GATTTTTAACATAACAAAAA+GGG + Chr1:101906665-101906684 None:intergenic 15.0%
!!! TGTTTTTTTACGAATATATA+CGG + Chr1:101906256-101906275 None:intergenic 15.0%
!!! TTTTTGTTATGTTAAAAATC+CGG - Chr1:101906665-101906684 MsG0180006257.01.T01:intron 15.0%
!! TGTATGATATTAATACACAA+TGG - Chr1:101907597-101907616 MsG0180006257.01.T01:five_prime_UTR 20.0%
!! TTATGAAGTAAAATAATTCG+TGG + Chr1:101905394-101905413 None:intergenic 20.0%
!!! AGATTGATTTAAATTGCATT+TGG + Chr1:101906918-101906937 None:intergenic 20.0%
!!! ATTCTAGAAAACTTGTTATA+TGG - Chr1:101907278-101907297 MsG0180006257.01.T01:CDS 20.0%
!!! GGATTTTTAACATAACAAAA+AGG + Chr1:101906666-101906685 None:intergenic 20.0%
! AGTTCAATTTGGATTATTCT+GGG - Chr1:101906030-101906049 MsG0180006257.01.T01:intron 25.0%
! AGTTTCGATCAATAAAATAC+AGG - Chr1:101907570-101907589 MsG0180006257.01.T01:five_prime_UTR 25.0%
! ATATCTTCTGCTATAGATTA+AGG + Chr1:101905932-101905951 None:intergenic 25.0%
! ATCAGAAAAATAGTCATGAT+GGG + Chr1:101905680-101905699 None:intergenic 25.0%
! ATGGTTTGATCTATATCATT+GGG - Chr1:101907620-101907639 MsG0180006257.01.T01:five_prime_UTR 25.0%
! ATTGCGAAGAATAAAAATTC+CGG + Chr1:101906611-101906630 None:intergenic 25.0%
! ATTTATTAACATGGATCCTT+GGG - Chr1:101904957-101904976 MsG0180006257.01.T01:three_prime_UTR 25.0%
! CATTCATAATGAGTTCAATT+TGG - Chr1:101906019-101906038 MsG0180006257.01.T01:intron 25.0%
! TATCAGAAAAATAGTCATGA+TGG + Chr1:101905681-101905700 None:intergenic 25.0%
! TATCTTCTGCTATAGATTAA+GGG + Chr1:101905931-101905950 None:intergenic 25.0%
! TCTCAAATTCCAATTGAAAA+TGG - Chr1:101905607-101905626 MsG0180006257.01.T01:intron 25.0%
! TGATATTAATACACAATGGA+TGG - Chr1:101907601-101907620 MsG0180006257.01.T01:five_prime_UTR 25.0%
! TTGAACTCATTATGAATGAA+AGG + Chr1:101906017-101906036 None:intergenic 25.0%
!! TCAAATGATAGTTTTCGAAA+AGG + Chr1:101905905-101905924 None:intergenic 25.0%
!! TTGTTATTAATGAAGTGGTT+TGG + Chr1:101906829-101906848 None:intergenic 25.0%
!! TTTGAAGTGAAAATATGAAG+GGG + Chr1:101907499-101907518 None:intergenic 25.0%
!! TTTGGTTGTTATTAATGAAG+TGG + Chr1:101906834-101906853 None:intergenic 25.0%
!! TTTTAACATAACAAAAAGGG+TGG + Chr1:101906662-101906681 None:intergenic 25.0%
!! TTTTCAAAGTAGATAACAAG+TGG - Chr1:101906053-101906072 MsG0180006257.01.T01:intron 25.0%
!! TTTTCAATTGCATGTATCAT+AGG + Chr1:101905571-101905590 None:intergenic 25.0%
!!! ACTTTGAAGTGAAAATATGA+AGG + Chr1:101907501-101907520 None:intergenic 25.0%
!!! CTTTGAAGTGAAAATATGAA+GGG + Chr1:101907500-101907519 None:intergenic 25.0%
AAAAAAAAAAGGGAGACACA+AGG + Chr1:101906150-101906169 None:intergenic 30.0%
AATGAAAGGAATGTGGAATA+AGG + Chr1:101906003-101906022 None:intergenic 30.0%
ACTAATAAGAAAATCCGGAA+AGG + Chr1:101906745-101906764 None:intergenic 30.0%
AGATGAATGATTTCCTTCAA+AGG + Chr1:101907230-101907249 None:intergenic 30.0%
AGGGTAAAAAAAATCACCAA+GGG - Chr1:101907468-101907487 MsG0180006257.01.T01:intron 30.0%
CATTATGAATGAAAGGAATG+TGG + Chr1:101906010-101906029 None:intergenic 30.0%
CATTCATAAAACATACAAGC+CGG - Chr1:101906589-101906608 MsG0180006257.01.T01:intron 30.0%
CATTTATTAACATGGATCCT+TGG - Chr1:101904956-101904975 MsG0180006257.01.T01:three_prime_UTR 30.0%
CTAATAAGAAAATCCGGAAA+GGG + Chr1:101906744-101906763 None:intergenic 30.0%
CTATTATCAAACACTCTAGT+TGG - Chr1:101907045-101907064 MsG0180006257.01.T01:CDS 30.0%
GAGTTCAATTTGGATTATTC+TGG - Chr1:101906029-101906048 MsG0180006257.01.T01:intron 30.0%
GATAGTAATTCTTATCTGCT+TGG - Chr1:101907307-101907326 MsG0180006257.01.T01:CDS 30.0%
GATGGTTTGATCTATATCAT+TGG - Chr1:101907619-101907638 MsG0180006257.01.T01:five_prime_UTR 30.0%
GCTACAATGCTTATGTATTT+AGG - Chr1:101905832-101905851 MsG0180006257.01.T01:intron 30.0%
GGGTAACTAATAAGAAAATC+CGG + Chr1:101906750-101906769 None:intergenic 30.0%
TAGGGTAAAAAAAATCACCA+AGG - Chr1:101907467-101907486 MsG0180006257.01.T01:intron 30.0%
TAGTATAACTTTGCCTTTGA+AGG - Chr1:101907214-101907233 MsG0180006257.01.T01:CDS 30.0%
TATTTAGGTGACAATGTTGA+GGG - Chr1:101905847-101905866 MsG0180006257.01.T01:intron 30.0%
TCAGAAAAATAGTCATGATG+GGG + Chr1:101905679-101905698 None:intergenic 30.0%
TCGTCATTATTATAACCTCT+GGG + Chr1:101905313-101905332 None:intergenic 30.0%
TGTTGTTGAGTTCTTGATTA+GGG + Chr1:101906302-101906321 None:intergenic 30.0%
TTATCTGCTTGGTATTATCA+GGG - Chr1:101907318-101907337 MsG0180006257.01.T01:CDS 30.0%
TTATGTGTGAAACCAGTTAA+AGG - Chr1:101907164-101907183 MsG0180006257.01.T01:CDS 30.0%
TTCCTACTGATAAACAAGTT+TGG - Chr1:101906784-101906803 MsG0180006257.01.T01:CDS 30.0%
TTTGAAGGAAATCATTCATC+TGG - Chr1:101907229-101907248 MsG0180006257.01.T01:CDS 30.0%
! AACACTTGCATTTTACACAT+TGG + Chr1:101907001-101907020 None:intergenic 30.0%
! ACACTTGCATTTTACACATT+GGG + Chr1:101907000-101907019 None:intergenic 30.0%
! ATAAGCTCTCCATTTTCAAT+TGG + Chr1:101905619-101905638 None:intergenic 30.0%
! ATGATCGAATCGATTCAATT+TGG - Chr1:101905190-101905209 MsG0180006257.01.T01:CDS 30.0%
! ATGTATTTCGTTGTTTCATG+CGG + Chr1:101906211-101906230 None:intergenic 30.0%
! GAAGTTGTTGTTGTTGTAAA+TGG + Chr1:101905277-101905296 None:intergenic 30.0%
! GTATGTTTTATGAATGGTAG+TGG + Chr1:101906585-101906604 None:intergenic 30.0%
! TGATCGAATCGATTCAATTT+GGG - Chr1:101905191-101905210 MsG0180006257.01.T01:CDS 30.0%
! TTGTTGTTGAGTTCTTGATT+AGG + Chr1:101906303-101906322 None:intergenic 30.0%
!!! AGGTAATGAGGTATTTTTTC+TGG + Chr1:101906541-101906560 None:intergenic 30.0%
!!! GGTAATGAGGTATTTTTTCT+GGG + Chr1:101906540-101906559 None:intergenic 30.0%
AAAGAAAGAGATTGACTGAC+TGG - Chr1:101905024-101905043 MsG0180006257.01.T01:three_prime_UTR 35.0%
AACAAAAAGGGTGGAAGATT+TGG + Chr1:101906653-101906672 None:intergenic 35.0%
AACTGTTAAGCAAGCAGAAA+GGG + Chr1:101905784-101905803 None:intergenic 35.0%
AAGGAATGTGGAATAAGGTT+TGG + Chr1:101905998-101906017 None:intergenic 35.0%
ACGAGGAATGTGATTATCTT+AGG - Chr1:101905425-101905444 MsG0180006257.01.T01:CDS 35.0%
AGAACAACCTCAAAATGACA+AGG - Chr1:101906460-101906479 MsG0180006257.01.T01:intron 35.0%
ATGCGGCTATTTGGATTATT+TGG + Chr1:101906705-101906724 None:intergenic 35.0%
CACAAAAGATACATGCATCT+AGG + Chr1:101905961-101905980 None:intergenic 35.0%
CGAGGAATGTGATTATCTTA+GGG - Chr1:101905426-101905445 MsG0180006257.01.T01:CDS 35.0%
CGTCATTATTATAACCTCTG+GGG + Chr1:101905312-101905331 None:intergenic 35.0%
CTACTGATAAACAAGTTTGG+TGG - Chr1:101906787-101906806 MsG0180006257.01.T01:intron 35.0%
CTTATCTGCTTGGTATTATC+AGG - Chr1:101907317-101907336 MsG0180006257.01.T01:CDS 35.0%
GAAGAAGAAGAAGAAGAAGA+AGG + Chr1:101905159-101905178 None:intergenic 35.0%
GAGGAATGTGATTATCTTAG+GGG - Chr1:101905427-101905446 MsG0180006257.01.T01:CDS 35.0%
GGGTAAAAAAAATCACCAAG+GGG - Chr1:101907469-101907488 MsG0180006257.01.T01:CDS 35.0%
GTATTTAGGTGACAATGTTG+AGG - Chr1:101905846-101905865 MsG0180006257.01.T01:intron 35.0%
GTCACAATCGGAATGATTAT+TGG - Chr1:101905115-101905134 MsG0180006257.01.T01:three_prime_UTR 35.0%
GTCGTCATTATTATAACCTC+TGG + Chr1:101905314-101905333 None:intergenic 35.0%
TCCTTGGGAAAATGAATGAA+AGG - Chr1:101904972-101904991 MsG0180006257.01.T01:three_prime_UTR 35.0%
TTAAACCTGAAGTCCTTAGT+TGG - Chr1:101905365-101905384 MsG0180006257.01.T01:intron 35.0%
! ACTGATTCTTCTCATACCTA+AGG + Chr1:101905648-101905667 None:intergenic 35.0%
! CAATTTGGGATTACAATTGC+AGG - Chr1:101905205-101905224 MsG0180006257.01.T01:CDS 35.0%
! CACCAAACTTGTTTATCAGT+AGG + Chr1:101906789-101906808 None:intergenic 35.0%
! CGGCTTGTATGTTTTATGAA+TGG + Chr1:101906591-101906610 None:intergenic 35.0%
! CTTCAGGTTTAACATATCCA+AGG + Chr1:101905357-101905376 None:intergenic 35.0%
! GTATCTTTTGTGTTTTGTCC+CGG - Chr1:101905969-101905988 MsG0180006257.01.T01:intron 35.0%
! GTGTTGTAGTATCTGTTTTG+AGG + Chr1:101906342-101906361 None:intergenic 35.0%
! TAACAGTTCAATTTGAAGCG+TGG - Chr1:101905796-101905815 MsG0180006257.01.T01:intron 35.0%
! TCCTTTCATTCATTTTCCCA+AGG + Chr1:101904976-101904995 None:intergenic 35.0%
! TGTATTTCGTTGTTTCATGC+GGG + Chr1:101906210-101906229 None:intergenic 35.0%
! TGTTTATCAGTAGGAAGTGT+TGG + Chr1:101906780-101906799 None:intergenic 35.0%
!! AAATTGCATTTGGTGTACGA+TGG + Chr1:101906908-101906927 None:intergenic 35.0%
!! AATTGCATTTGGTGTACGAT+GGG + Chr1:101906907-101906926 None:intergenic 35.0%
!!! ACAGTTGAAATTTTGAGACG+AGG + Chr1:101905463-101905482 None:intergenic 35.0%
!!! CAGTTGAAATTTTGAGACGA+GGG + Chr1:101905462-101905481 None:intergenic 35.0%
!!! GAGTTTTCCTTGTCATTTTG+AGG + Chr1:101906470-101906489 None:intergenic 35.0%
!!! GATTGTCTTTTGAGGTAATG+AGG + Chr1:101906553-101906572 None:intergenic 35.0%
AAAAAGGGTGGAAGATTTGG+TGG + Chr1:101906650-101906669 None:intergenic 40.0%
AAAAGGAGAAGCTTACCGAT+GGG + Chr1:101905888-101905907 None:intergenic 40.0%
AAAGGGTTGCATTGCAATTG+AGG + Chr1:101905767-101905786 None:intergenic 40.0%
AGCACAGCATTTCCTTTAAC+TGG + Chr1:101907179-101907198 None:intergenic 40.0%
AGTGATGTCAGAACAAGTTC+TGG - Chr1:101905514-101905533 MsG0180006257.01.T01:intron 40.0%
ATAAGAAAATCCGGAAAGGG+AGG + Chr1:101906741-101906760 None:intergenic 40.0%
CAAGAAGGAATCTTGCGATT+AGG + Chr1:101906951-101906970 None:intergenic 40.0%
CTAATCGCAAGATTCCTTCT+TGG - Chr1:101906949-101906968 MsG0180006257.01.T01:CDS 40.0%
CTTCTCACTTTCGTCACAAT+CGG - Chr1:101905103-101905122 MsG0180006257.01.T01:three_prime_UTR 40.0%
GAACTGTTAAGCAAGCAGAA+AGG + Chr1:101905785-101905804 None:intergenic 40.0%
GATAGTATGCAATGCGTTTC+AGG - Chr1:101907097-101907116 MsG0180006257.01.T01:CDS 40.0%
GGTTATAGGCAAATCCAAGA+AGG + Chr1:101906966-101906985 None:intergenic 40.0%
GTGGAATAAGGTTTGGATTC+CGG + Chr1:101905991-101906010 None:intergenic 40.0%
TAATTCGTGGAGACCAACTA+AGG + Chr1:101905381-101905400 None:intergenic 40.0%
TACCTCAAAAGACAATCGCT+CGG - Chr1:101906556-101906575 MsG0180006257.01.T01:intron 40.0%
TGGAATAAGGTTTGGATTCC+GGG + Chr1:101905990-101906009 None:intergenic 40.0%
TGGTTTCACACATAACCCTT+TGG + Chr1:101907159-101907178 None:intergenic 40.0%
TTTGGAAAGCGAGAAATGAC+CGG + Chr1:101906687-101906706 None:intergenic 40.0%
! AAGGAAATGCTGTGCTTTTC+TGG - Chr1:101907183-101907202 MsG0180006257.01.T01:CDS 40.0%
! GTGGTGGGAAATTAACCAAA+GGG - Chr1:101907141-101907160 MsG0180006257.01.T01:CDS 40.0%
! TAAGCATTGTAGCTATTCGC+TGG + Chr1:101905825-101905844 None:intergenic 40.0%
! TGTGGTGGGAAATTAACCAA+AGG - Chr1:101907140-101907159 MsG0180006257.01.T01:CDS 40.0%
!! AGATTTGGTGGAGGAGATTA+AGG + Chr1:101906638-101906657 None:intergenic 40.0%
!! ATGATTTAGCTAGCTTTCGG+TGG - Chr1:101907443-101907462 MsG0180006257.01.T01:intron 40.0%
!! ATTGCATTTGGTGTACGATG+GGG + Chr1:101906906-101906925 None:intergenic 40.0%
!! CGCATGATTTAGCTAGCTTT+CGG - Chr1:101907440-101907459 MsG0180006257.01.T01:intron 40.0%
!! GGTGTTTTTGTGTTTCTGTC+AGG + Chr1:101906395-101906414 None:intergenic 40.0%
!! TGATTTAGCTAGCTTTCGGT+GGG - Chr1:101907444-101907463 MsG0180006257.01.T01:intron 40.0%
!! TGTTTCTGTCAGGTTTTGAC+AGG + Chr1:101906385-101906404 None:intergenic 40.0%
!! TTGATTAGGGAGCTGTTTTG+AGG + Chr1:101906289-101906308 None:intergenic 40.0%
!!! AGCTGTTTTGAGGTTCTATG+GGG + Chr1:101906279-101906298 None:intergenic 40.0%
!!! AGGTATTTTTTCTGGGATGC+TGG + Chr1:101906533-101906552 None:intergenic 40.0%
!!! GAGCTGTTTTGAGGTTCTAT+GGG + Chr1:101906280-101906299 None:intergenic 40.0%
!!! GGACATTTTGACTCTACTCA+AGG - Chr1:101907066-101907085 MsG0180006257.01.T01:CDS 40.0%
!!! TGAAATTTTGAGACGAGGGA+GGG + Chr1:101905458-101905477 None:intergenic 40.0%
!!! TTGAAATTTTGAGACGAGGG+AGG + Chr1:101905459-101905478 None:intergenic 40.0%
AATCACATTCCTCGTAGCTG+AGG + Chr1:101905420-101905439 None:intergenic 45.0%
AATCGAATCGATGAGTCCTC+CGG - Chr1:101905060-101905079 MsG0180006257.01.T01:three_prime_UTR 45.0%
ACACATTGGGCATGTTTCTC+AGG + Chr1:101906987-101907006 None:intergenic 45.0%
ACATACGCGACGAAAAAGAG+AGG - Chr1:101906227-101906246 MsG0180006257.01.T01:intron 45.0%
ACCTCAAAAGACAATCGCTC+GGG - Chr1:101906557-101906576 MsG0180006257.01.T01:intron 45.0%
ATATGAAGGGGAAAACCCCT+TGG + Chr1:101907487-101907506 None:intergenic 45.0%
CAGATGAATGTAGCTGTGGT+GGG - Chr1:101907126-101907145 MsG0180006257.01.T01:CDS 45.0%
CTTATTCCTGCATTGCGAGT+TGG + Chr1:101906866-101906885 None:intergenic 45.0%
GAAAAGGAGAAGCTTACCGA+TGG + Chr1:101905889-101905908 None:intergenic 45.0%
GAAGCACAAATCTTACGCCT+TGG - Chr1:101905337-101905356 MsG0180006257.01.T01:intron 45.0%
GAGAGCTTATGCAAGTCCTT+AGG - Chr1:101905629-101905648 MsG0180006257.01.T01:intron 45.0%
GGGCATGTTTCTCAGGTTAT+AGG + Chr1:101906980-101906999 None:intergenic 45.0%
GGTTCAGATGAATGTAGCTG+TGG - Chr1:101907122-101907141 MsG0180006257.01.T01:CDS 45.0%
GTCGATGCAAACACAGGAAA+GGG - Chr1:101905484-101905503 MsG0180006257.01.T01:intron 45.0%
TAGGTGACAATGTTGAGGGA+GGG - Chr1:101905851-101905870 MsG0180006257.01.T01:intron 45.0%
TCAGATGAATGTAGCTGTGG+TGG - Chr1:101907125-101907144 MsG0180006257.01.T01:CDS 45.0%
TCATAACTTCCTCAGCTACG+AGG - Chr1:101905408-101905427 MsG0180006257.01.T01:CDS 45.0%
TGCTTGGTATTATCAGGGAC+TGG - Chr1:101907323-101907342 MsG0180006257.01.T01:CDS 45.0%
TGGTATTATCAGGGACTGGA+TGG - Chr1:101907327-101907346 MsG0180006257.01.T01:CDS 45.0%
TTAGGTGACAATGTTGAGGG+AGG - Chr1:101905850-101905869 MsG0180006257.01.T01:intron 45.0%
! CAGTTCAATTTGAAGCGTGG+TGG - Chr1:101905799-101905818 MsG0180006257.01.T01:intron 45.0%
!! ATCAGTAGGAAGTGTTGGAG+TGG + Chr1:101906775-101906794 None:intergenic 45.0%
!! TCAGTAGGAAGTGTTGGAGT+GGG + Chr1:101906774-101906793 None:intergenic 45.0%
!! TTGCATTTGGTGTACGATGG+GGG + Chr1:101906905-101906924 None:intergenic 45.0%
!!! ATTTTTTCTGGGATGCTGGC+AGG + Chr1:101906529-101906548 None:intergenic 45.0%
!!! GGAGCTGTTTTGAGGTTCTA+TGG + Chr1:101906281-101906300 None:intergenic 45.0%
!!! TGCTGTGCTTTTCTGGAGTA+TGG - Chr1:101907190-101907209 MsG0180006257.01.T01:CDS 45.0%
AACACAATCTTCATCGCCGG+AGG + Chr1:101905079-101905098 None:intergenic 50.0%
ACTCTATCCACCTCCCTTTC+CGG - Chr1:101906728-101906747 MsG0180006257.01.T01:CDS 50.0%
ACTGGATGGACAGTCAGATC+CGG - Chr1:101907341-101907360 MsG0180006257.01.T01:CDS 50.0%
ACTGTCGTCGATGCAAACAC+AGG - Chr1:101905478-101905497 MsG0180006257.01.T01:intron 50.0%
AGAAAATCCGGAAAGGGAGG+TGG + Chr1:101906738-101906757 None:intergenic 50.0%
AGAAGTGGTCGGCTACAAAG+TGG - Chr1:101907400-101907419 MsG0180006257.01.T01:intron 50.0%
AGGGGAAACGCATTTCCCAT+CGG - Chr1:101905870-101905889 MsG0180006257.01.T01:intron 50.0%
AGGTGACAATGTTGAGGGAG+GGG - Chr1:101905852-101905871 MsG0180006257.01.T01:intron 50.0%
CATCCTCCATGCACACTATC+CGG + Chr1:101907363-101907382 None:intergenic 50.0%
CCGAACACAATCTTCATCGC+CGG + Chr1:101905082-101905101 None:intergenic 50.0%
CCGGCGATGAAGATTGTGTT+CGG - Chr1:101905079-101905098 MsG0180006257.01.T01:three_prime_UTR 50.0%
CGTCGATGCAAACACAGGAA+AGG - Chr1:101905483-101905502 MsG0180006257.01.T01:intron 50.0%
GGAGACCAACTAAGGACTTC+AGG + Chr1:101905373-101905392 None:intergenic 50.0%
GTATGCAATGCGTTTCAGGC+TGG - Chr1:101907101-101907120 MsG0180006257.01.T01:CDS 50.0%
TAGAGTGGCATGCGGCTATT+TGG + Chr1:101906714-101906733 None:intergenic 50.0%
TCAAGATCACTACTCCCCAG+AGG - Chr1:101905295-101905314 MsG0180006257.01.T01:intron 50.0%
TCAGATCCGGATAGTGTGCA+TGG - Chr1:101907354-101907373 MsG0180006257.01.T01:CDS 50.0%
TGACAGGTGCAGATAGCAGT+AGG + Chr1:101906369-101906388 None:intergenic 50.0%
TGCAGGTGCTCTCTCTCAAT+TGG - Chr1:101905222-101905241 MsG0180006257.01.T01:CDS 50.0%
! ACCCGAGCGATTGTCTTTTG+AGG + Chr1:101906561-101906580 None:intergenic 50.0%
! GCTTTTGAGCTGTTGCGCTT+GGG + Chr1:101906424-101906443 None:intergenic 50.0%
! TGCTTTTGAGCTGTTGCGCT+TGG + Chr1:101906425-101906444 None:intergenic 50.0%
!! AAGGGTGGAAGATTTGGTGG+AGG + Chr1:101906647-101906666 None:intergenic 50.0%
!! AGTAGGAAGTGTTGGAGTGG+GGG + Chr1:101906772-101906791 None:intergenic 50.0%
!! CAGTAGGAAGTGTTGGAGTG+GGG + Chr1:101906773-101906792 None:intergenic 50.0%
!! TAGCTAGCTTTCGGTGGGTA+GGG - Chr1:101907449-101907468 MsG0180006257.01.T01:intron 50.0%
!! TTAGCTAGCTTTCGGTGGGT+AGG - Chr1:101907448-101907467 MsG0180006257.01.T01:intron 50.0%
ACTTCTCCCCAGCAAGTACC+GGG + Chr1:101907386-101907405 None:intergenic 55.0%
CACTTCTCCCCAGCAAGTAC+CGG + Chr1:101907387-101907406 None:intergenic 55.0%
GAGGTGGATAGAGTGGCATG+CGG + Chr1:101906722-101906741 None:intergenic 55.0%
GATCCGGATAGTGTGCATGG+AGG - Chr1:101907357-101907376 MsG0180006257.01.T01:CDS 55.0%
GGAAAGGGAGGTGGATAGAG+TGG + Chr1:101906729-101906748 None:intergenic 55.0%
GGTCGGCTACAAAGTGGATG+AGG - Chr1:101907406-101907425 MsG0180006257.01.T01:intron 55.0%
TAGTGTGCATGGAGGATGCC+CGG - Chr1:101907365-101907384 MsG0180006257.01.T01:intron 55.0%
! ACTTGCTGGGGAGAAGTGGT+CGG - Chr1:101907389-101907408 MsG0180006257.01.T01:intron 55.0%
! GCGAGTTGGCGTGGAATGTT+TGG + Chr1:101906852-101906871 None:intergenic 55.0%
!! GTAGGAAGTGTTGGAGTGGG+GGG + Chr1:101906771-101906790 None:intergenic 55.0%
!! TAGGAAGTGTTGGAGTGGGG+GGG + Chr1:101906770-101906789 None:intergenic 55.0%
GAGGATGCCCGGTACTTGCT+GGG - Chr1:101907376-101907395 MsG0180006257.01.T01:intron 60.0%
TCCACGCCAACTCGCAATGC+AGG - Chr1:101906857-101906876 MsG0180006257.01.T01:intron 60.0%
! AGCTGTTGCGCTTGGGTTGC+TGG + Chr1:101906417-101906436 None:intergenic 60.0%
! AGGATGCCCGGTACTTGCTG+GGG - Chr1:101907377-101907396 MsG0180006257.01.T01:intron 60.0%
! CGGTACTTGCTGGGGAGAAG+TGG - Chr1:101907385-101907404 MsG0180006257.01.T01:intron 60.0%
! GCTGTTGCGCTTGGGTTGCT+GGG + Chr1:101906416-101906435 None:intergenic 60.0%
! TCCTGCATTGCGAGTTGGCG+TGG + Chr1:101906861-101906880 None:intergenic 60.0%
GGAGGATGCCCGGTACTTGC+TGG - Chr1:101907375-101907394 MsG0180006257.01.T01:intron 65.0%
! GGGATGCTGGCAGGTGCTGT+GGG + Chr1:101906520-101906539 None:intergenic 65.0%
! TGCTGGCAGGTGCTGTGGGT+TGG + Chr1:101906516-101906535 None:intergenic 65.0%
! TGGGATGCTGGCAGGTGCTG+TGG + Chr1:101906521-101906540 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr1 gene 101904953 101907652 101904953 ID=MsG0180006257.01;Name=MsG0180006257.01
Chr1 mRNA 101904953 101907652 101904953 ID=MsG0180006257.01.T01;Parent=MsG0180006257.01;Name=MsG0180006257.01.T01;_AED=0.31;_eAED=0.31;_QI=117|1|1|1|1|1|5|206|277
Chr1 exon 101904953 101905266 101904953 ID=MsG0180006257.01.T01:exon:42590;Parent=MsG0180006257.01.T01
Chr1 exon 101905394 101905486 101905394 ID=MsG0180006257.01.T01:exon:42589;Parent=MsG0180006257.01.T01
Chr1 exon 101906714 101906803 101906714 ID=MsG0180006257.01.T01:exon:42588;Parent=MsG0180006257.01.T01
Chr1 exon 101906903 101907378 101906903 ID=MsG0180006257.01.T01:exon:42587;Parent=MsG0180006257.01.T01
Chr1 exon 101907469 101907652 101907469 ID=MsG0180006257.01.T01:exon:42586;Parent=MsG0180006257.01.T01
Chr1 five_prime_UTR 101907536 101907652 101907536 ID=MsG0180006257.01.T01:five_prime_utr;Parent=MsG0180006257.01.T01
Chr1 CDS 101907469 101907535 101907469 ID=MsG0180006257.01.T01:cds;Parent=MsG0180006257.01.T01
Chr1 CDS 101906903 101907378 101906903 ID=MsG0180006257.01.T01:cds;Parent=MsG0180006257.01.T01
Chr1 CDS 101906714 101906803 101906714 ID=MsG0180006257.01.T01:cds;Parent=MsG0180006257.01.T01
Chr1 CDS 101905394 101905486 101905394 ID=MsG0180006257.01.T01:cds;Parent=MsG0180006257.01.T01
Chr1 CDS 101905159 101905266 101905159 ID=MsG0180006257.01.T01:cds;Parent=MsG0180006257.01.T01
Chr1 three_prime_UTR 101904953 101905158 101904953 ID=MsG0180006257.01.T01:three_prime_utr;Parent=MsG0180006257.01.T01
Gene Sequence

>MsG0180006257.01.T01

ATGAGTCCTCCGGCGATGAAGATTGTGTTCGGACTTCTCACTTTCGTCACAATCGGAATGATTATTGGTGCTCTCTCTCAATTGGCATTCATACGCAGATTAGAACTAGAAGAACCATTTACAACAACAACAACTTCAAGATCACTACTCCCCAGAGGTTATAATAATGACGACAAAGAAGCACAAATCTTACGCCTTGGATATGTTAAACCTGAAGTCCTTAGTTGGTCTCCACGAATTATTTTACTTCATAACTTCCTCAGCTACGAGGAATGTGATTATCTTAGGGGAGTTGCCCTCCCTCGTCTCAAAATTTCAACTGTCGTCGATGCAAACACAGGAAAGGGAATCAAGAGTGATGTCAGAACAAGTTCTGGTATGTTTCTGAATCATGAAGAGAGAAAATATCCTATGATACATGCAATTGAAAAAAGAATTTCTGTCTACTCTCAAATTCCAATTGAAAATGGAGAGCTTATGCAAGTCCTTAGGTATGAGAAGAATCAGTATTACAGACCCCATCATGACTATTTTTCTGATACTTTCAATTTGAAGCGTGGTGGCCAGCGAATAGCTACAATGCTTATGTATTTAGGTGACAATGTTGAGGGAGGGGAAACGCATTTCCCATCGGCTGGTTCAGATGAATGTAGCTGTGGTGGGAAATTAACCAAAGGGTTATGTGTGAAACCAGTTAAAGGAAATGCTGTGCTTTTCTGGAGTATGGGACTGGATGGACAGTCAGATCCGGATAGTGTGCATGGAGGATGCCCGGTACTTGCTGGGGAGAAGTGGTCGGCTACAAAGTGGATGAGGCAATCAGTTCACGCATGA

Protein sequence

>MsG0180006257.01.T01

MSPPAMKIVFGLLTFVTIGMIIGALSQLAFIRRLELEEPFTTTTTSRSLLPRGYNNDDKEAQILRLGYVKPEVLSWSPRIILLHNFLSYEECDYLRGVALPRLKISTVVDANTGKGIKSDVRTSSGMFLNHEERKYPMIHAIEKRISVYSQIPIENGELMQVLRYEKNQYYRPHHDYFSDTFNLKRGGQRIATMLMYLGDNVEGGETHFPSAGSDECSCGGKLTKGLCVKPVKGNAVLFWSMGLDGQSDPDSVHGGCPVLAGEKWSATKWMRQSVHA*