AlfalfaGEDB | MsG0480022436.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022436.01

KEGG: -
GO: -
PFAM: -

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	KEH30481.1	75.804	591	39	7	1	516	1	562	0	822

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	Q0WLC6	27.065	569	272	22	17	516	24	518	3.01E-35	144

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	A0A072UM73	75.804	591	39	7	1	516	1	562	0.0	822

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048059.01	MsG0480022436.01	0.828969	6.688002e-55	6.750725e-52
MsG0080048669.01	MsG0480022436.01	0.847432	1.161016e-59	2.063284e-56
MsG0080048978.01	MsG0480022436.01	0.819078	1.403076e-52	1.068938e-49
MsG0180003980.01	MsG0480022436.01	0.807132	5.869874e-50	3.243369e-47
MsG0180004747.01	MsG0480022436.01	0.877122	8.092314e-69	4.023004e-65
MsG0180006142.01	MsG0480022436.01	0.803493	3.395695e-49	1.708857e-46
MsG0280007136.01	MsG0480022436.01	0.805718	1.165731e-49	6.212308e-47
MsG0280007247.01	MsG0480022436.01	0.829822	4.151483e-55	4.297623e-52
MsG0280007649.01	MsG0480022436.01	0.804356	2.247162e-49	1.156208e-46
MsG0280007650.01	MsG0480022436.01	0.805057	1.603920e-49	8.403091e-47

Showing 1 to 10 of 57 entries

Previous1 2 3 4 5 6Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	MTR_4g072990	75.804	591	39	7	1	516	1	562	0.0	822
MsG0480022436.01.T01	MTR_4g072990	75.804	591	39	7	1	516	1	562	0.0	821

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	AT4G34830	27.065	569	272	22	17	516	24	518	3.07e-36	144

Showing 1 to 1 of 1 entries

Previous1Next

Find 97 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATTGAAGGTGGACCTCT+TGG	0.462722	4:-72553601	None:intergenic
AAAGCACTTGATACAATCAA+TGG	0.566195	4:+72553922	MsG0480022436.01.T01:CDS
AAAGTTTCCAATCACAAGGA+AGG	0.552441	4:+72554345	MsG0480022436.01.T01:CDS
AAGTTAATCTGAGAGAACGT+TGG	0.644868	4:-72552222	None:intergenic
AATAAGCCTAACATAATCAA+AGG	0.583446	4:-72554967	None:intergenic
AATATCAGCCTGGATGGATT+AGG	0.400404	4:+72554141	MsG0480022436.01.T01:CDS
AATGACTTGATACTACTCAG+GGG	0.781282	4:-72554066	None:intergenic
AATGTACTCAATGTTGGATT+TGG	0.267152	4:-72554990	None:intergenic
ACAACACACATGTCATGCAC+TGG	0.575127	4:-72555104	None:intergenic
ACACATGTCATGCACTGGAA+AGG	0.595790	4:-72555099	None:intergenic

Showing 1 to 10 of 97 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AAATTGAAGAACAGAATAGC+CGG	-	Chr4:72554857-72554876	None:intergenic	30.0%
AAGATTGCAAAAATTGAAGG+TGG	-	Chr4:72553613-72553632	None:intergenic	30.0%
AAGCCAGTAAAAAAAACTAC+AGG	+	Chr4:72553180-72553199	MsG0480022436.01.T01:intron	30.0%
AATGTACTCAATGTTGGATT+TGG	-	Chr4:72554993-72555012	None:intergenic	30.0%
AATTCAATCAACTAGCTCAT+CGG	+	Chr4:72553125-72553144	MsG0480022436.01.T01:intron	30.0%
AGTTAAAGTTTCCAATCACA+AGG	+	Chr4:72554341-72554360	MsG0480022436.01.T01:CDS	30.0%
ATAATGACTTGATACTACTC+AGG	-	Chr4:72554071-72554090	None:intergenic	30.0%
ATAGATGCCAATGAATTGAT+TGG	-	Chr4:72553781-72553800	None:intergenic	30.0%
ATCAAAAGCAATGTCATCTT+TGG	+	Chr4:72553976-72553995	MsG0480022436.01.T01:CDS	30.0%
ATCAGAGAAATGATCAAATC+AGG	+	Chr4:72554499-72554518	MsG0480022436.01.T01:CDS	30.0%

Showing 1 to 10 of 174 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	72552196	72555241	72552196	ID=MsG0480022436.01;Name=MsG0480022436.01
Chr4	mRNA	72552196	72555241	72552196	ID=MsG0480022436.01.T01;Parent=MsG0480022436.01;Name=MsG0480022436.01.T01;_AED=0.50;_eAED=0.53;_QI=0\|0\|0\|1\|1\|1\|6\|0\|517
Chr4	exon	72552196	72552510	72552196	ID=MsG0480022436.01.T01:exon:10955;Parent=MsG0480022436.01.T01
Chr4	exon	72553524	72553707	72553524	ID=MsG0480022436.01.T01:exon:10956;Parent=MsG0480022436.01.T01
Chr4	exon	72553803	72554195	72553803	ID=MsG0480022436.01.T01:exon:10957;Parent=MsG0480022436.01.T01
Chr4	exon	72554325	72554592	72554325	ID=MsG0480022436.01.T01:exon:10958;Parent=MsG0480022436.01.T01
Chr4	exon	72554766	72554829	72554766	ID=MsG0480022436.01.T01:exon:10959;Parent=MsG0480022436.01.T01
Chr4	exon	72554912	72555241	72554912	ID=MsG0480022436.01.T01:exon:10960;Parent=MsG0480022436.01.T01
Chr4	CDS	72552196	72552510	72552196	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72553524	72553707	72553524	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72553803	72554195	72553803	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72554325	72554592	72554325	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72554766	72554829	72554766	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72554912	72555241	72554912	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01

Gene Sequence

>MsG0480022436.01.T01

ATGGATGTTAACAAACTCTTCAGCAACCAACGTTCTCTCAGATTAACTTCTCCTCTCTTTGTTTCTTCTTCCCGTACAAGTTTCCTTGGTTGCAACCACAGTCTCAAACCACCTACATCTTCAGCTTCAGCTTCGTCGCTTCGTTCTCGAAATAAACGGAACAAGTTAGGACTTCTTCGTCTTCATTCTCCTCGGTTTGTATTTAAGGCTGCTTTAAACTCTCAGCTTATTGTCGTTGTCGTTGTTGTTACGTTATCTGCTGTTTCTTGGATTCATTTCACTCTTAACAATAAGAAAAAGAAGAATATCAACCAGAATTTCAAAGGGATAACACTGAATGAAATTGGGAAGTTAAATGATCTCAACGGAAAGGACAACCATGTTTTTGAGGACCAAGAGGTCCACCTTCAATTTTTGCAATCTTCTATGGTGCAGGAAACAGCCATGAAGACTCGGACATTAGATTCATCATCATCTGTTCTTGACTCTAGTGTCAATGCTTTTGCTGAGGAAATGACTTTACAAGTGGAAGAAAGTCAAGATGTTGCTGACTCTGCTCTTGAGTTGCCTTTGAGTGAGGTCAAACCTGAGCATAACACTTCTTCTGTTGGTTTAGACAAAGCACTTGATACAATCAATGGCCATACTAAAGAAAAAATTGATCTTCATGCCATCAAAAGCAATGTCATCTTTGGTGAATCTGTTAGGGAAGGGCTGTACATGTTTTATGATGACAATAATTTGGCATCTGAATCCATGACACCCCTGAGTAGTATCAAGTCATTATCTCCCAGTACTTCTTTTGTGAATAGCACAGAACTGTCATCAGCTATAAGAAATATCAGCCTGGATGGATTAGGATTATCTGCAGATATTTCTCTACAAAATGCAGAGTACGTTGAAGGAGCAGTTAAAGTTTCCAATCACAAGGAAGGCTATCCCCCACAACATACAAGTAAAAAATTGAGGAAAGCCAGCAGATATGTGAGAGACTTGGAAAGGAACTATATGGATCACAATAATAACAATGTTTTGCCCCAGAGTTCCCACGTCAGGGTGCATGTTGATCAGAGAAATGATCAAATCAGGGTCCACGATGGTCTGAAAGTTGATCCTTCAAAGCATCTAAGCAAGTATAATAACTTGCTAAAAGCTGGGAGGTTATGTGAATGTGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTACTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACAAAAAGCCGTAAATGAAGCCTTTGATTATGTTAGGCTTATTCCAAATCCAACATTGAGTACATTAATATGCTTATGTCAGTGTGTGCAAGCTCCCAAGATTCAGAAGGTAAATGATGCTGGTTACCCTCCAAAAGGTTCTTTCTTTTCCACCTTTCCAGTGCATGACATGTGTGTTGTGCGTTCAGGGGCTTTCCAAGTTATTCAGCTTCTTAAGGATGCTCGACTAGATCCTGATTGCAAACTTTATACCACTCTAATATCAACTTGTGGCAAGAGTGGAAAGTTGATCTAA

Protein sequence

>MsG0480022436.01.T01

MDVNKLFSNQRSLRLTSPLFVSSSRTSFLGCNHSLKPPTSSASASSLRSRNKRNKLGLLRLHSPRFVFKAALNSQLIVVVVVVTLSAVSWIHFTLNNKKKKNINQNFKGITLNEIGKLNDLNGKDNHVFEDQEVHLQFLQSSMVQETAMKTRTLDSSSSVLDSSVNAFAEEMTLQVEESQDVADSALELPLSEVKPEHNTSSVGLDKALDTINGHTKEKIDLHAIKSNVIFGESVREGLYMFYDDNNLASESMTPLSSIKSLSPSTSFVNSTELSSAIRNISLDGLGLSADISLQNAEYVEGAVKVSNHKEGYPPQHTSKKLRKASRYVRDLERNYMDHNNNNVLPQSSHVRVHVDQRNDQIRVHDGLKVDPSKHLSKYNNLLKAGRLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTLICLCQCVQAPKIQKVNDAGYPPKGSFFSTFPVHDMCVVRSGAFQVIQLLKDARLDPDCKLYTTLISTCGKSGKLI*