AlfalfaGEDB | MsG0480022436.01

M. sativa cultivar ZhongmuNo.1 / MsG0480022436.01

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	KEH30481.1	75.804	591	39	7	1	516	1	562	0	822

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	Q0WLC6	27.065	569	272	22	17	516	24	518	3.01E-35	144

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	A0A072UM73	75.804	591	39	7	1	516	1	562	0.0	822

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
MsG0080048059.01	MsG0480022436.01	0.828969	6.688002e-55	6.750725e-52
MsG0080048669.01	MsG0480022436.01	0.847432	1.161016e-59	2.063284e-56
MsG0080048978.01	MsG0480022436.01	0.819078	1.403076e-52	1.068938e-49
MsG0180003980.01	MsG0480022436.01	0.807132	5.869874e-50	3.243369e-47
MsG0180004747.01	MsG0480022436.01	0.877122	8.092314e-69	4.023004e-65
MsG0180006142.01	MsG0480022436.01	0.803493	3.395695e-49	1.708857e-46
MsG0280010704.01	MsG0480022436.01	0.803509	3.370365e-49	1.696836e-46
MsG0380012065.01	MsG0480022436.01	0.813749	2.186741e-51	1.440079e-48
MsG0480018963.01	MsG0480022436.01	0.824718	6.933618e-54	6.192087e-51
MsG0480021143.01	MsG0480022436.01	0.813260	2.801147e-51	1.820308e-48
MsG0480021205.01	MsG0480022436.01	0.828822	7.260564e-55	7.297420e-52
MsG0480021390.01	MsG0480022436.01	0.882893	7.107390e-71	4.406967e-67
MsG0480021667.01	MsG0480022436.01	0.842191	3.006172e-58	4.522163e-55
MsG0480022436.01	MsG0480022437.01	0.954938	9.543188e-113	2.794023e-107
MsG0480022436.01	MsG0480022591.01	0.801774	7.683608e-49	3.700611e-46
MsG0480022436.01	MsG0480022626.01	0.812599	3.908741e-51	2.495810e-48
MsG0480022436.01	MsG0480022665.01	0.801977	6.981004e-49	3.379488e-46
MsG0480022436.01	MsG0480023217.01	0.827798	1.282035e-54	1.250604e-51
MsG0480022436.01	MsG0480023480.01	0.814675	1.365027e-51	9.218069e-49
MsG0480022436.01	MsG0480023481.01	0.864365	1.281354e-64	4.012621e-61
MsG0480022436.01	MsG0480023482.01	0.832263	1.044603e-55	1.161351e-52
MsG0480022436.01	MsG0480023717.01	0.831113	2.006583e-55	2.156482e-52
MsG0480022436.01	MsG0480023818.01	0.813300	2.744122e-51	1.785283e-48
MsG0480022436.01	MsG0580025392.01	0.832405	9.631918e-56	1.075554e-52
MsG0480022436.01	MsG0580025830.01	0.846053	2.765860e-59	4.701698e-56
MsG0480022436.01	MsG0680032829.01	0.818599	1.802193e-52	1.354955e-49
MsG0480022436.01	MsG0780035994.01	0.800579	1.349192e-48	6.304688e-46
MsG0480022436.01	MsG0780040121.01	0.804176	2.449839e-49	1.254642e-46
MsG0480022436.01	MsG0780040283.01	0.827336	1.655251e-54	1.593421e-51
MsG0480022436.01	MsG0780040622.01	0.817784	2.755340e-52	2.025767e-49
MsG0480022436.01	MsG0780041106.01	0.812394	4.335317e-51	2.753339e-48
MsG0480022436.01	MsG0780041296.01	0.807158	5.794665e-50	3.204083e-47
MsG0480022436.01	MsG0780041478.01	0.805723	1.163106e-49	6.199171e-47
MsG0480022436.01	MsG0780041492.01	0.812952	3.272985e-51	2.109269e-48
MsG0480022436.01	MsG0780041625.01	0.804215	2.404423e-49	1.232588e-46
MsG0480022436.01	MsG0880045778.01	0.801507	8.716286e-49	4.169836e-46
MsG0480022436.01	MsG0880046105.01	0.802461	5.547921e-49	2.719273e-46
MsG0480022436.01	MsG0880046584.01	0.804944	1.693896e-49	8.849147e-47
MsG0480022436.01	MsG0880046639.01	0.811062	8.446084e-51	5.176718e-48
MsG0380015348.01	MsG0480022436.01	0.818074	2.369947e-52	1.756194e-49
MsG0380015439.01	MsG0480022436.01	0.819566	1.085775e-52	8.385428e-50
MsG0380015654.01	MsG0480022436.01	0.805832	1.103539e-49	5.897826e-47
MsG0380015752.01	MsG0480022436.01	0.809546	1.793846e-50	1.056255e-47
MsG0380016089.01	MsG0480022436.01	0.818546	1.852670e-52	1.390961e-49
MsG0380016166.01	MsG0480022436.01	0.828253	9.964789e-55	9.851003e-52
MsG0380016424.01	MsG0480022436.01	0.833416	5.399370e-56	6.214093e-53
MsG0380016790.01	MsG0480022436.01	0.800705	1.271708e-48	5.961311e-46
MsG0380017099.01	MsG0480022436.01	0.804203	2.417522e-49	1.238938e-46
MsG0380017895.01	MsG0480022436.01	0.800717	1.264206e-48	5.928117e-46
MsG0380017962.01	MsG0480022436.01	0.810618	1.054076e-50	6.384401e-48
MsG0380018058.01	MsG0480022436.01	0.806288	8.848223e-50	4.784246e-47
MsG0280007136.01	MsG0480022436.01	0.805718	1.165731e-49	6.212308e-47
MsG0280007247.01	MsG0480022436.01	0.829822	4.151483e-55	4.297623e-52
MsG0280007649.01	MsG0480022436.01	0.804356	2.247162e-49	1.156208e-46
MsG0280007650.01	MsG0480022436.01	0.805057	1.603920e-49	8.403091e-47
MsG0280009541.01	MsG0480022436.01	0.859942	2.916892e-63	7.838809e-60
MsG0280009579.01	MsG0480022436.01	0.817259	3.618414e-52	2.622098e-49

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	MTR_4g072990	75.804	591	39	7	1	516	1	562	0.0	822
MsG0480022436.01.T01	MTR_4g072990	75.804	591	39	7	1	516	1	562	0.0	821

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MsG0480022436.01.T01	AT4G34830	27.065	569	272	22	17	516	24	518	3.07e-36	144

Find 97 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTCTCCTCGGTTTGTATTTA+AGG	0.088338	4:+72552381	MsG0480022436.01.T01:CDS
GGGATAACACTGAATGAAAT+TGG	0.192802	4:+72553533	MsG0480022436.01.T01:CDS
TTACGTTATCTGCTGTTTCT+TGG	0.204596	4:+72552443	MsG0480022436.01.T01:CDS
ATCATTTACCTTCTGAATCT+TGG	0.256360	4:-72555042	None:intergenic
AATGTACTCAATGTTGGATT+TGG	0.267152	4:-72554990	None:intergenic
ATAATCAAAGGCTTCATTTA+CGG	0.291086	4:-72554955	None:intergenic
GACATGTGTGTTGTGCGTTC+AGG	0.307503	4:+72555113	MsG0480022436.01.T01:CDS
TCATCTTTGGTGAATCTGTT+AGG	0.308800	4:+72553989	MsG0480022436.01.T01:CDS
CCAAGTTATTCAGCTTCTTA+AGG	0.315602	4:+72555142	MsG0480022436.01.T01:CDS
GCACCCTGACGTGGGAACTC+TGG	0.323918	4:-72554470	None:intergenic
TGTAGAATTGCTTAAAGATA+TGG	0.332712	4:+72554778	MsG0480022436.01.T01:CDS
ATCAGAGAAATGATCAAATC+AGG	0.341135	4:+72554499	MsG0480022436.01.T01:CDS
ATCAAAAGCAATGTCATCTT+TGG	0.346139	4:+72553976	MsG0480022436.01.T01:CDS
CGAAATAAACGGAACAAGTT+AGG	0.346560	4:+72552343	MsG0480022436.01.T01:CDS
TGCCCCAGAGTTCCCACGTC+AGG	0.348100	4:+72554466	MsG0480022436.01.T01:CDS
GTGGAAAAGAAAGAACCTTT+TGG	0.353311	4:-72555077	None:intergenic
ATCTAATGTCCGAGTCTTCA+TGG	0.358188	4:-72553651	None:intergenic
CACCCTGACGTGGGAACTCT+GGG	0.375262	4:-72554469	None:intergenic
TATAATAACTTGCTAAAAGC+TGG	0.379234	4:+72554567	MsG0480022436.01.T01:CDS
TCATTTACCTTCTGAATCTT+GGG	0.385427	4:-72555041	None:intergenic
TACTTGCTTAGATGCTTTGA+AGG	0.388725	4:-72554546	None:intergenic
AGACTTGGAAAGGAACTATA+TGG	0.388759	4:+72554422	MsG0480022436.01.T01:CDS
AATATCAGCCTGGATGGATT+AGG	0.400404	4:+72554141	MsG0480022436.01.T01:CDS
GGGATAGCCTTCCTTGTGAT+TGG	0.401016	4:-72554352	None:intergenic
GCTATTCACAAAAGAAGTAC+TGG	0.402445	4:-72554094	None:intergenic
CCTTAAGAAGCTGAATAACT+TGG	0.414224	4:-72555142	None:intergenic
ACATGTGTGTTGTGCGTTCA+GGG	0.430962	4:+72555114	MsG0480022436.01.T01:CDS
TTTGCAATCTTCTATGGTGC+AGG	0.431615	4:+72553622	MsG0480022436.01.T01:CDS
ATGAAGCCTTTGATTATGTT+AGG	0.434422	4:+72554961	MsG0480022436.01.T01:CDS
GCTTAAAGATATGGAAATGA+AGG	0.435681	4:+72554787	MsG0480022436.01.T01:CDS
CAAGTCTCTCACATATCTGC+TGG	0.441958	4:-72554406	None:intergenic
CATATTAATGTACTCAATGT+TGG	0.448414	4:-72554996	None:intergenic
TCTTCCCGTACAAGTTTCCT+TGG	0.454684	4:+72552262	MsG0480022436.01.T01:CDS
GTTGTTTCAGAGTACGTTGA+AGG	0.456209	4:+72554315	MsG0480022436.01.T01:intron
GTGGTATAAAGTTTGCAATC+AGG	0.458037	4:-72555179	None:intergenic
AAAATTGAAGGTGGACCTCT+TGG	0.462722	4:-72553601	None:intergenic
TTCTTCGTCTTCATTCTCCT+CGG	0.463909	4:+72552368	MsG0480022436.01.T01:CDS
CATCTTTGGTGAATCTGTTA+GGG	0.465089	4:+72553990	MsG0480022436.01.T01:CDS
GTTCTTGACTCTAGTGTCAA+TGG	0.482807	4:+72553686	MsG0480022436.01.T01:CDS
GGATAACACTGAATGAAATT+GGG	0.484798	4:+72553534	MsG0480022436.01.T01:CDS
CGCTTCGTTCTCGAAATAAA+CGG	0.488086	4:+72552332	MsG0480022436.01.T01:CDS
GCCCCAGAGTTCCCACGTCA+GGG	0.497804	4:+72554467	MsG0480022436.01.T01:CDS
TGCAACCAAGGAAACTTGTA+CGG	0.508630	4:-72552267	None:intergenic
ATAATGACTTGATACTACTC+AGG	0.520125	4:-72554068	None:intergenic
CTTAAAGATATGGAAATGAA+GGG	0.521571	4:+72554788	MsG0480022436.01.T01:CDS
GAGCATAACACTTCTTCTGT+TGG	0.526329	4:+72553892	MsG0480022436.01.T01:CDS
ATTCAGAAGGTAAATGATGC+TGG	0.528732	4:+72555047	MsG0480022436.01.T01:CDS
TGAGACTGTGGTTGCAACCA+AGG	0.530551	4:-72552279	None:intergenic
ACAGAAGAAGTGTTATGCTC+AGG	0.532552	4:-72553889	None:intergenic
GAAGAGTTTGTTAACATCCA+TGG	0.533521	4:-72552194	None:intergenic
ATATCAACTTGTGGCAAGAG+TGG	0.535804	4:+72555206	MsG0480022436.01.T01:CDS
ATGTAGGTGGTTTGAGACTG+TGG	0.536856	4:-72552291	None:intergenic
ATAATAACTTGCTAAAAGCT+GGG	0.539445	4:+72554568	MsG0480022436.01.T01:CDS
ATAAGAAATATCAGCCTGGA+TGG	0.542839	4:+72554135	MsG0480022436.01.T01:CDS
CAGATAATCCTAATCCATCC+AGG	0.546462	4:-72554149	None:intergenic
GATATTTCTCTACAAAATGC+AGG	0.547105	4:+72554174	MsG0480022436.01.T01:CDS
AAAGTTTCCAATCACAAGGA+AGG	0.552441	4:+72554345	MsG0480022436.01.T01:CDS
GATGCTGGTTACCCTCCAAA+AGG	0.556691	4:+72555062	MsG0480022436.01.T01:CDS
TCTTGAGTTGCCTTTGAGTG+AGG	0.559441	4:+72553861	MsG0480022436.01.T01:CDS
TTTGGTGAATCTGTTAGGGA+AGG	0.561627	4:+72553994	MsG0480022436.01.T01:CDS
GATCAACATGCACCCTGACG+TGG	0.561653	4:-72554479	None:intergenic
CATGTCATGCACTGGAAAGG+TGG	0.564542	4:-72555096	None:intergenic
AAAGCACTTGATACAATCAA+TGG	0.566195	4:+72553922	MsG0480022436.01.T01:CDS
GATACTACTCAGGGGTGTCA+TGG	0.571503	4:-72554058	None:intergenic
ACAACACACATGTCATGCAC+TGG	0.575127	4:-72555104	None:intergenic
CAGCAGATATGTGAGAGACT+TGG	0.575172	4:+72554407	MsG0480022436.01.T01:CDS
TTGGTGAATCTGTTAGGGAA+GGG	0.576307	4:+72553995	MsG0480022436.01.T01:CDS
AATAAGCCTAACATAATCAA+AGG	0.583446	4:-72554967	None:intergenic
GAAGCTGAAGCTGAAGATGT+AGG	0.584319	4:-72552307	None:intergenic
AGCTATAAGAAATATCAGCC+TGG	0.590406	4:+72554131	MsG0480022436.01.T01:CDS
AGGAAACAGCCATGAAGACT+CGG	0.592255	4:+72553642	MsG0480022436.01.T01:CDS
TCAGGTTTGACCTCACTCAA+AGG	0.594372	4:-72553871	None:intergenic
GTTAAATGATCTCAACGGAA+AGG	0.595014	4:+72553559	MsG0480022436.01.T01:CDS
ACACATGTCATGCACTGGAA+AGG	0.595790	4:-72555099	None:intergenic
TAATGACTTGATACTACTCA+GGG	0.595999	4:-72554067	None:intergenic
TCAGAGAAATGATCAAATCA+GGG	0.600347	4:+72554500	MsG0480022436.01.T01:CDS
CTATTCACAAAAGAAGTACT+GGG	0.602744	4:-72554093	None:intergenic
GGGTTTACTAGATATGACTA+AGG	0.609686	4:+72554808	MsG0480022436.01.T01:CDS
AGTTAAAGTTTCCAATCACA+AGG	0.615761	4:+72554341	MsG0480022436.01.T01:CDS
GCCACAAGTTGATATTAGAG+TGG	0.618665	4:-72555198	None:intergenic
ATCAACATGCACCCTGACGT+GGG	0.629485	4:-72554478	None:intergenic
GCAACCAAGGAAACTTGTAC+GGG	0.629842	4:-72552266	None:intergenic
CATGTGTGTTGTGCGTTCAG+GGG	0.630599	4:+72555115	MsG0480022436.01.T01:CDS
GGGAAGTTAAATGATCTCAA+CGG	0.638939	4:+72553554	MsG0480022436.01.T01:CDS
TGAGGAAATGACTTTACAAG+TGG	0.640048	4:+72553810	MsG0480022436.01.T01:CDS
ACCACTCTAATATCAACTTG+TGG	0.644320	4:+72555197	MsG0480022436.01.T01:CDS
AAGTTAATCTGAGAGAACGT+TGG	0.644868	4:-72552222	None:intergenic
GATATGTGAGAGACTTGGAA+AGG	0.649522	4:+72554412	MsG0480022436.01.T01:CDS
GCAAGCTCCCAAGATTCAGA+AGG	0.668354	4:+72555034	MsG0480022436.01.T01:CDS
CGGGAAGAAGAAACAAAGAG+AGG	0.669192	4:-72552247	None:intergenic
GCAGCCTTAAATACAAACCG+AGG	0.674078	4:-72552385	None:intergenic
GCTGAAGCTGAAGATGTAGG+TGG	0.702665	4:-72552304	None:intergenic
GATCAAATCAGGGTCCACGA+TGG	0.707347	4:+72554510	MsG0480022436.01.T01:CDS
ATAACTTGCTAAAAGCTGGG+AGG	0.714993	4:+72554571	MsG0480022436.01.T01:CDS
ACCCTGACGTGGGAACTCTG+GGG	0.752028	4:-72554468	None:intergenic
GATCAACTTTCAGACCATCG+TGG	0.753870	4:-72554524	None:intergenic
AATGACTTGATACTACTCAG+GGG	0.781282	4:-72554066	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTAATTTTTTTCAATAAGAT+AGG	+	Chr4:72552801-72552820	MsG0480022436.01.T01:intron	10.0%
!!	ATTCTTATAAGATTTATCTA+AGG	-	Chr4:72554630-72554649	None:intergenic	15.0%
!!!	TAAAGTATATTGATTTTGTT+AGG	+	Chr4:72554744-72554763	MsG0480022436.01.T01:intron	15.0%
!!	AACATACAAGTAAAAAATTG+AGG	+	Chr4:72554379-72554398	MsG0480022436.01.T01:CDS	20.0%
!!	ATACATATCAAATGACAAAA+GGG	-	Chr4:72553069-72553088	None:intergenic	20.0%
!!	TATACATATCAAATGACAAA+AGG	-	Chr4:72553070-72553089	None:intergenic	20.0%
!!!	AATTTTTTACTTGTATGTTG+TGG	-	Chr4:72554378-72554397	None:intergenic	20.0%
!!!	AGCTAGTAAAAATAAGTTTT+AGG	-	Chr4:72552988-72553007	None:intergenic	20.0%
!!!	ATTTTTTACTTGTATGTTGT+GGG	-	Chr4:72554377-72554396	None:intergenic	20.0%
!!!	GATCAATTTTTTCTTTAGTA+TGG	-	Chr4:72553948-72553967	None:intergenic	20.0%
!!!	GTTTTATGATGACAATAATT+TGG	+	Chr4:72554026-72554045	MsG0480022436.01.T01:CDS	20.0%
!!!	TTTTTTTCAATAAGATAGGA+AGG	+	Chr4:72552805-72552824	MsG0480022436.01.T01:intron	20.0%
!!!	TTTTTTTCCAGAATTTCAAA+GGG	+	Chr4:72553513-72553532	MsG0480022436.01.T01:intron	20.0%
!!!	TTTTTTTTCCAGAATTTCAA+AGG	+	Chr4:72553512-72553531	MsG0480022436.01.T01:intron	20.0%
!	AATAAGCCTAACATAATCAA+AGG	-	Chr4:72554970-72554989	None:intergenic	25.0%
!	ATAATCAAAGGCTTCATTTA+CGG	-	Chr4:72554958-72554977	None:intergenic	25.0%
!	CAGAAAAAATATCACCATAA+CGG	-	Chr4:72552607-72552626	None:intergenic	25.0%
!	CATATTAATGTACTCAATGT+TGG	-	Chr4:72554999-72555018	None:intergenic	25.0%
!	CTTAAAGATATGGAAATGAA+GGG	+	Chr4:72554788-72554807	MsG0480022436.01.T01:CDS	25.0%
!	TAGAAGATTGCAAAAATTGA+AGG	-	Chr4:72553616-72553635	None:intergenic	25.0%
!	TAGTAGTGAAAATGTTAAGA+CGG	-	Chr4:72553413-72553432	None:intergenic	25.0%
!	TGTAGAATTGCTTAAAGATA+TGG	+	Chr4:72554778-72554797	MsG0480022436.01.T01:CDS	25.0%
!	TTGATTGAATTTGTAGTGTT+TGG	-	Chr4:72553116-72553135	None:intergenic	25.0%
!!	ATTCTGGAAAAAAAAGAATC+TGG	-	Chr4:72553507-72553526	None:intergenic	25.0%
!!	GTTACTAAACAGATGTATTT+TGG	+	Chr4:72553222-72553241	MsG0480022436.01.T01:intron	25.0%
!!	TCAATTTTTGCAATCTTCTA+TGG	+	Chr4:72553616-72553635	MsG0480022436.01.T01:CDS	25.0%
!!!	AGTTTTTTTTACTGGCTTAT+AGG	-	Chr4:72553178-72553197	None:intergenic	25.0%
!!!	ATAATAACTTGCTAAAAGCT+GGG	+	Chr4:72554568-72554587	MsG0480022436.01.T01:CDS	25.0%
!!!	TATAATAACTTGCTAAAAGC+TGG	+	Chr4:72554567-72554586	MsG0480022436.01.T01:CDS	25.0%
!!!	TCATTTTTTAGAATTCAGTG+CGG	+	Chr4:72552541-72552560	MsG0480022436.01.T01:intron	25.0%
!!!	TTAAAGTTAGTTTTCCGTTA+TGG	+	Chr4:72552590-72552609	MsG0480022436.01.T01:intron	25.0%
!!!	TTTTTTACTTGTATGTTGTG+GGG	-	Chr4:72554376-72554395	None:intergenic	25.0%
	AAATTGAAGAACAGAATAGC+CGG	-	Chr4:72554857-72554876	None:intergenic	30.0%
	AAGATTGCAAAAATTGAAGG+TGG	-	Chr4:72553613-72553632	None:intergenic	30.0%
	AAGCCAGTAAAAAAAACTAC+AGG	+	Chr4:72553180-72553199	MsG0480022436.01.T01:intron	30.0%
	AATGTACTCAATGTTGGATT+TGG	-	Chr4:72554993-72555012	None:intergenic	30.0%
	AATTCAATCAACTAGCTCAT+CGG	+	Chr4:72553125-72553144	MsG0480022436.01.T01:intron	30.0%
	AGTTAAAGTTTCCAATCACA+AGG	+	Chr4:72554341-72554360	MsG0480022436.01.T01:CDS	30.0%
	ATAATGACTTGATACTACTC+AGG	-	Chr4:72554071-72554090	None:intergenic	30.0%
	ATAGATGCCAATGAATTGAT+TGG	-	Chr4:72553781-72553800	None:intergenic	30.0%
	ATCAAAAGCAATGTCATCTT+TGG	+	Chr4:72553976-72553995	MsG0480022436.01.T01:CDS	30.0%
	ATCAGAGAAATGATCAAATC+AGG	+	Chr4:72554499-72554518	MsG0480022436.01.T01:CDS	30.0%
	ATCATTTACCTTCTGAATCT+TGG	-	Chr4:72555045-72555064	None:intergenic	30.0%
	ATGAAGCCTTTGATTATGTT+AGG	+	Chr4:72554961-72554980	MsG0480022436.01.T01:CDS	30.0%
	ATTGCTTATCGAAAAACACT+AGG	+	Chr4:72552875-72552894	MsG0480022436.01.T01:intron	30.0%
	CATTAAAGCTCTATTTGAGA+AGG	-	Chr4:72553284-72553303	None:intergenic	30.0%
	GAAAAAGAAGAATATCAACC+AGG	+	Chr4:72552489-72552508	MsG0480022436.01.T01:CDS	30.0%
	GATATTTCTCTACAAAATGC+AGG	+	Chr4:72554174-72554193	MsG0480022436.01.T01:CDS	30.0%
	GCTTAAAGATATGGAAATGA+AGG	+	Chr4:72554787-72554806	MsG0480022436.01.T01:CDS	30.0%
	GGATAACACTGAATGAAATT+GGG	+	Chr4:72553534-72553553	MsG0480022436.01.T01:CDS	30.0%
	TAAGCTATAAGCTGAAAAAC+TGG	-	Chr4:72552916-72552935	None:intergenic	30.0%
	TAATGACTTGATACTACTCA+GGG	-	Chr4:72554070-72554089	None:intergenic	30.0%
	TCAGAGAAATGATCAAATCA+GGG	+	Chr4:72554500-72554519	MsG0480022436.01.T01:CDS	30.0%
	TCATTTACCTTCTGAATCTT+GGG	-	Chr4:72555044-72555063	None:intergenic	30.0%
	TGAACTTATAGCAGATAACA+CGG	+	Chr4:72552677-72552696	MsG0480022436.01.T01:intron	30.0%
	TGACTTTCCAATCAATTCAT+TGG	+	Chr4:72553771-72553790	MsG0480022436.01.T01:intron	30.0%
!	AAAAGAAAGAACCTTTTGGA+GGG	-	Chr4:72555076-72555095	None:intergenic	30.0%
!	AAAGCACTTGATACAATCAA+TGG	+	Chr4:72553922-72553941	MsG0480022436.01.T01:CDS	30.0%
!	AAGGACACTTTTATGTTCTT+TGG	-	Chr4:72554611-72554630	None:intergenic	30.0%
!	TGATAAAGAAGAGTATAGAG+TGG	-	Chr4:72552524-72552543	None:intergenic	30.0%
!	TTTTTACTTGTATGTTGTGG+GGG	-	Chr4:72554375-72554394	None:intergenic	30.0%
!!	AAAGATGACATTGCTTTTGA+TGG	-	Chr4:72553977-72553996	None:intergenic	30.0%
!!	CTATTCACAAAAGAAGTACT+GGG	-	Chr4:72554096-72554115	None:intergenic	30.0%
!!	TTATGTTCTTTGGCTTTCAT+TGG	-	Chr4:72554601-72554620	None:intergenic	30.0%
!!!	AGACCTGTAGTTTTTTTTAC+TGG	-	Chr4:72553186-72553205	None:intergenic	30.0%
	AAAGTTTCCAATCACAAGGA+AGG	+	Chr4:72554345-72554364	MsG0480022436.01.T01:CDS	35.0%
	AAATATGCCTTATCACCACA+AGG	+	Chr4:72553451-72553470	MsG0480022436.01.T01:intron	35.0%
	AAGTTAATCTGAGAGAACGT+TGG	-	Chr4:72552225-72552244	None:intergenic	35.0%
	AATGACTTGATACTACTCAG+GGG	-	Chr4:72554069-72554088	None:intergenic	35.0%
	ACCACTCTAATATCAACTTG+TGG	+	Chr4:72555197-72555216	MsG0480022436.01.T01:CDS	35.0%
	ACTGTTACCATTGACACTAA+AGG	-	Chr4:72553720-72553739	None:intergenic	35.0%
	AGACTTGGAAAGGAACTATA+TGG	+	Chr4:72554422-72554441	MsG0480022436.01.T01:CDS	35.0%
	AGCTATAAGAAATATCAGCC+TGG	+	Chr4:72554131-72554150	MsG0480022436.01.T01:CDS	35.0%
	ATAAGAAATATCAGCCTGGA+TGG	+	Chr4:72554135-72554154	MsG0480022436.01.T01:CDS	35.0%
	ATGACAAAAGGGTAAACTTG+AGG	-	Chr4:72553058-72553077	None:intergenic	35.0%
	ATTACTTCCTTGTGGTGATA+AGG	-	Chr4:72553461-72553480	None:intergenic	35.0%
	ATTCAGAAGGTAAATGATGC+TGG	+	Chr4:72555047-72555066	MsG0480022436.01.T01:CDS	35.0%
	CATCTTTGGTGAATCTGTTA+GGG	+	Chr4:72553990-72554009	MsG0480022436.01.T01:CDS	35.0%
	CCAAGTTATTCAGCTTCTTA+AGG	+	Chr4:72555142-72555161	MsG0480022436.01.T01:CDS	35.0%
	CCTTAAGAAGCTGAATAACT+TGG	-	Chr4:72555145-72555164	None:intergenic	35.0%
	CGAAATAAACGGAACAAGTT+AGG	+	Chr4:72552343-72552362	MsG0480022436.01.T01:CDS	35.0%
	CTAAGGTACATGCATCTTTA+TGG	+	Chr4:72554825-72554844	MsG0480022436.01.T01:intron	35.0%
	CTCTTATGTGTCATATTCAC+TGG	+	Chr4:72554883-72554902	MsG0480022436.01.T01:intron	35.0%
	CTTGCAGATGTTGAAAAACT+TGG	-	Chr4:72554925-72554944	None:intergenic	35.0%
	GGGAAGTTAAATGATCTCAA+CGG	+	Chr4:72553554-72553573	MsG0480022436.01.T01:CDS	35.0%
	GGGATAACACTGAATGAAAT+TGG	+	Chr4:72553533-72553552	MsG0480022436.01.T01:CDS	35.0%
	GGGTTTACTAGATATGACTA+AGG	+	Chr4:72554808-72554827	MsG0480022436.01.T01:CDS	35.0%
	GTGGTATAAAGTTTGCAATC+AGG	-	Chr4:72555182-72555201	None:intergenic	35.0%
	GTTAAATGATCTCAACGGAA+AGG	+	Chr4:72553559-72553578	MsG0480022436.01.T01:CDS	35.0%
	TACTTGCTTAGATGCTTTGA+AGG	-	Chr4:72554549-72554568	None:intergenic	35.0%
	TACTTTAACTAAGCCAGAGA+AGG	-	Chr4:72553327-72553346	None:intergenic	35.0%
	TATTCTAGTGTTTCCTTCTC+TGG	+	Chr4:72553311-72553330	MsG0480022436.01.T01:intron	35.0%
	TCATCTTTGGTGAATCTGTT+AGG	+	Chr4:72553989-72554008	MsG0480022436.01.T01:CDS	35.0%
	TGACAAAAGGGTAAACTTGA+GGG	-	Chr4:72553057-72553076	None:intergenic	35.0%
	TGAGGAAATGACTTTACAAG+TGG	+	Chr4:72553810-72553829	MsG0480022436.01.T01:CDS	35.0%
	TGGAAAGTCACAGACAAAAA+AGG	-	Chr4:72553761-72553780	None:intergenic	35.0%
!	ATTTTCACTACTACTGACAC+AGG	+	Chr4:72553420-72553439	MsG0480022436.01.T01:intron	35.0%
!	GAAAAGAAAGAACCTTTTGG+AGG	-	Chr4:72555077-72555096	None:intergenic	35.0%
!	GCTATTCACAAAAGAAGTAC+TGG	-	Chr4:72554097-72554116	None:intergenic	35.0%
!	GTGGAAAAGAAAGAACCTTT+TGG	-	Chr4:72555080-72555099	None:intergenic	35.0%
!	GTGTCATATTCACTGGTTAT+AGG	+	Chr4:72554890-72554909	MsG0480022436.01.T01:intron	35.0%
!	TGCATCTTTATGGTTGTTTC+CGG	+	Chr4:72554835-72554854	MsG0480022436.01.T01:intron	35.0%
!	TTCTCCTCGGTTTGTATTTA+AGG	+	Chr4:72552381-72552400	MsG0480022436.01.T01:CDS	35.0%
!	TTTTCACTACTACTGACACA+GGG	+	Chr4:72553421-72553440	MsG0480022436.01.T01:intron	35.0%
!!	AAAGGACAACCATGTTTTTG+AGG	+	Chr4:72553577-72553596	MsG0480022436.01.T01:CDS	35.0%
!!	ATAGAGTGGATTAACTAACC+TGG	-	Chr4:72552510-72552529	None:intergenic	35.0%
!!	GTGTTATCCCTTTGAAATTC+TGG	-	Chr4:72553523-72553542	None:intergenic	35.0%
!!	TAACAGTTCTGAGGTATTAG+AGG	+	Chr4:72553733-72553752	MsG0480022436.01.T01:intron	35.0%
!!	TTACGTTATCTGCTGTTTCT+TGG	+	Chr4:72552443-72552462	MsG0480022436.01.T01:CDS	35.0%
	AAAATTGAAGGTGGACCTCT+TGG	-	Chr4:72553604-72553623	None:intergenic	40.0%
	AACGGTTCCTTTAGTGTCAA+TGG	+	Chr4:72553710-72553729	MsG0480022436.01.T01:intron	40.0%
	ATATCAACTTGTGGCAAGAG+TGG	+	Chr4:72555206-72555225	MsG0480022436.01.T01:CDS	40.0%
	ATCCGTAGTTAAGAGACGAA+GGG	-	Chr4:72554702-72554721	None:intergenic	40.0%
	ATCTAATGTCCGAGTCTTCA+TGG	-	Chr4:72553654-72553673	None:intergenic	40.0%
	CAGATAATCCTAATCCATCC+AGG	-	Chr4:72554152-72554171	None:intergenic	40.0%
	CGCTTCGTTCTCGAAATAAA+CGG	+	Chr4:72552332-72552351	MsG0480022436.01.T01:CDS	40.0%
	GAAAAACACTAGGCTCTGTT+TGG	+	Chr4:72552885-72552904	MsG0480022436.01.T01:intron	40.0%
	GAATCTGGTTATCAATGACC+TGG	-	Chr4:72553492-72553511	None:intergenic	40.0%
	GACTCTAGTGTCAATGGTAA+CGG	+	Chr4:72553692-72553711	MsG0480022436.01.T01:intron	40.0%
	GAGCATAACACTTCTTCTGT+TGG	+	Chr4:72553892-72553911	MsG0480022436.01.T01:CDS	40.0%
	GATATGTGAGAGACTTGGAA+AGG	+	Chr4:72554412-72554431	MsG0480022436.01.T01:CDS	40.0%
	GTTCTTGACTCTAGTGTCAA+TGG	+	Chr4:72553686-72553705	MsG0480022436.01.T01:CDS	40.0%
	TGCAACCAAGGAAACTTGTA+CGG	-	Chr4:72552270-72552289	None:intergenic	40.0%
	TGTCAATGGTAACAGTTCTG+AGG	+	Chr4:72553724-72553743	MsG0480022436.01.T01:intron	40.0%
	TGTGTTACAGAAAACTCGTC+TGG	+	Chr4:72552942-72552961	MsG0480022436.01.T01:intron	40.0%
	TTCGCAACATTACTTCCTTG+TGG	-	Chr4:72553469-72553488	None:intergenic	40.0%
	TTCTTCGTCTTCATTCTCCT+CGG	+	Chr4:72552368-72552387	MsG0480022436.01.T01:CDS	40.0%
	TTGGTGAATCTGTTAGGGAA+GGG	+	Chr4:72553995-72554014	MsG0480022436.01.T01:CDS	40.0%
	TTTGCAATCTTCTATGGTGC+AGG	+	Chr4:72553622-72553641	MsG0480022436.01.T01:CDS	40.0%
	TTTGGTGAATCTGTTAGGGA+AGG	+	Chr4:72553994-72554013	MsG0480022436.01.T01:CDS	40.0%
!	AATATCAGCCTGGATGGATT+AGG	+	Chr4:72554141-72554160	MsG0480022436.01.T01:CDS	40.0%
!	GTTGTTTCAGAGTACGTTGA+AGG	+	Chr4:72554315-72554334	MsG0480022436.01.T01:intron	40.0%
!!	ACAGAAGAAGTGTTATGCTC+AGG	-	Chr4:72553892-72553911	None:intergenic	40.0%
!!	ATAACTTGCTAAAAGCTGGG+AGG	+	Chr4:72554571-72554590	MsG0480022436.01.T01:CDS	40.0%
!!	GCCACAAGTTGATATTAGAG+TGG	-	Chr4:72555201-72555220	None:intergenic	40.0%
	ACAACACACATGTCATGCAC+TGG	-	Chr4:72555107-72555126	None:intergenic	45.0%
	ACACATGTCATGCACTGGAA+AGG	-	Chr4:72555102-72555121	None:intergenic	45.0%
	ACATGTGTGTTGTGCGTTCA+GGG	+	Chr4:72555114-72555133	MsG0480022436.01.T01:CDS	45.0%
	AGGAAACAGCCATGAAGACT+CGG	+	Chr4:72553642-72553661	MsG0480022436.01.T01:CDS	45.0%
	AGGAAGTAATGTTGCGAACC+AGG	+	Chr4:72553471-72553490	MsG0480022436.01.T01:intron	45.0%
	CAAGTCTCTCACATATCTGC+TGG	-	Chr4:72554409-72554428	None:intergenic	45.0%
	CAGCAGATATGTGAGAGACT+TGG	+	Chr4:72554407-72554426	MsG0480022436.01.T01:CDS	45.0%
	CCTCTTGGTCCTCAAAAACA+TGG	-	Chr4:72553589-72553608	None:intergenic	45.0%
	CGGGAAGAAGAAACAAAGAG+AGG	-	Chr4:72552250-72552269	None:intergenic	45.0%
	CTCCCTTCGTCTCTTAACTA+CGG	+	Chr4:72554697-72554716	MsG0480022436.01.T01:intron	45.0%
	GAAGCTGAAGCTGAAGATGT+AGG	-	Chr4:72552310-72552329	None:intergenic	45.0%
	GATCAACTTTCAGACCATCG+TGG	-	Chr4:72554527-72554546	None:intergenic	45.0%
	GATCCGTAGTTAAGAGACGA+AGG	-	Chr4:72554703-72554722	None:intergenic	45.0%
	GCAACCAAGGAAACTTGTAC+GGG	-	Chr4:72552269-72552288	None:intergenic	45.0%
	GCAGCCTTAAATACAAACCG+AGG	-	Chr4:72552388-72552407	None:intergenic	45.0%
	TCAGGTTTGACCTCACTCAA+AGG	-	Chr4:72553874-72553893	None:intergenic	45.0%
	TCTTCCCGTACAAGTTTCCT+TGG	+	Chr4:72552262-72552281	MsG0480022436.01.T01:CDS	45.0%
!	ATGTAGGTGGTTTGAGACTG+TGG	-	Chr4:72552294-72552313	None:intergenic	45.0%
!	GGCATCTATAGCTTTTGCTG+AGG	+	Chr4:72553792-72553811	MsG0480022436.01.T01:intron	45.0%
!	TCTTGAGTTGCCTTTGAGTG+AGG	+	Chr4:72553861-72553880	MsG0480022436.01.T01:CDS	45.0%
!!	CCATGTTTTTGAGGACCAAG+AGG	+	Chr4:72553586-72553605	MsG0480022436.01.T01:CDS	45.0%
	ATCAACATGCACCCTGACGT+GGG	-	Chr4:72554481-72554500	None:intergenic	50.0%
	CATGTCATGCACTGGAAAGG+TGG	-	Chr4:72555099-72555118	None:intergenic	50.0%
	CATGTGTGTTGTGCGTTCAG+GGG	+	Chr4:72555115-72555134	MsG0480022436.01.T01:CDS	50.0%
	CGTAGTTAAGAGACGAAGGG+AGG	-	Chr4:72554699-72554718	None:intergenic	50.0%
	GACATGTGTGTTGTGCGTTC+AGG	+	Chr4:72555113-72555132	MsG0480022436.01.T01:CDS	50.0%
	GATCAAATCAGGGTCCACGA+TGG	+	Chr4:72554510-72554529	MsG0480022436.01.T01:CDS	50.0%
	GCAAGCTCCCAAGATTCAGA+AGG	+	Chr4:72555034-72555053	MsG0480022436.01.T01:CDS	50.0%
	GCTGAAGCTGAAGATGTAGG+TGG	-	Chr4:72552307-72552326	None:intergenic	50.0%
	GGGATAGCCTTCCTTGTGAT+TGG	-	Chr4:72554355-72554374	None:intergenic	50.0%
	TGAGACTGTGGTTGCAACCA+AGG	-	Chr4:72552282-72552301	None:intergenic	50.0%
!	GATGCTGGTTACCCTCCAAA+AGG	+	Chr4:72555062-72555081	MsG0480022436.01.T01:CDS	50.0%
!!	GATACTACTCAGGGGTGTCA+TGG	-	Chr4:72554061-72554080	None:intergenic	50.0%
	GATCAACATGCACCCTGACG+TGG	-	Chr4:72554482-72554501	None:intergenic	55.0%
	ACCCTGACGTGGGAACTCTG+GGG	-	Chr4:72554471-72554490	None:intergenic	60.0%
	CACCCTGACGTGGGAACTCT+GGG	-	Chr4:72554472-72554491	None:intergenic	60.0%
	GCACCCTGACGTGGGAACTC+TGG	-	Chr4:72554473-72554492	None:intergenic	65.0%
	GCCCCAGAGTTCCCACGTCA+GGG	+	Chr4:72554467-72554486	MsG0480022436.01.T01:CDS	65.0%
	TGCCCCAGAGTTCCCACGTC+AGG	+	Chr4:72554466-72554485	MsG0480022436.01.T01:CDS	65.0%

Chromosome	Type	Strat	End	Strand	Name
Chr4	gene	72552196	72555241	72552196	ID=MsG0480022436.01;Name=MsG0480022436.01
Chr4	mRNA	72552196	72555241	72552196	ID=MsG0480022436.01.T01;Parent=MsG0480022436.01;Name=MsG0480022436.01.T01;_AED=0.50;_eAED=0.53;_QI=0\|0\|0\|1\|1\|1\|6\|0\|517
Chr4	exon	72552196	72552510	72552196	ID=MsG0480022436.01.T01:exon:10955;Parent=MsG0480022436.01.T01
Chr4	exon	72553524	72553707	72553524	ID=MsG0480022436.01.T01:exon:10956;Parent=MsG0480022436.01.T01
Chr4	exon	72553803	72554195	72553803	ID=MsG0480022436.01.T01:exon:10957;Parent=MsG0480022436.01.T01
Chr4	exon	72554325	72554592	72554325	ID=MsG0480022436.01.T01:exon:10958;Parent=MsG0480022436.01.T01
Chr4	exon	72554766	72554829	72554766	ID=MsG0480022436.01.T01:exon:10959;Parent=MsG0480022436.01.T01
Chr4	exon	72554912	72555241	72554912	ID=MsG0480022436.01.T01:exon:10960;Parent=MsG0480022436.01.T01
Chr4	CDS	72552196	72552510	72552196	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72553524	72553707	72553524	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72553803	72554195	72553803	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72554325	72554592	72554325	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72554766	72554829	72554766	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01
Chr4	CDS	72554912	72555241	72554912	ID=MsG0480022436.01.T01:cds;Parent=MsG0480022436.01.T01

Gene Sequence

>MsG0480022436.01.T01

ATGGATGTTAACAAACTCTTCAGCAACCAACGTTCTCTCAGATTAACTTCTCCTCTCTTTGTTTCTTCTTCCCGTACAAGTTTCCTTGGTTGCAACCACAGTCTCAAACCACCTACATCTTCAGCTTCAGCTTCGTCGCTTCGTTCTCGAAATAAACGGAACAAGTTAGGACTTCTTCGTCTTCATTCTCCTCGGTTTGTATTTAAGGCTGCTTTAAACTCTCAGCTTATTGTCGTTGTCGTTGTTGTTACGTTATCTGCTGTTTCTTGGATTCATTTCACTCTTAACAATAAGAAAAAGAAGAATATCAACCAGAATTTCAAAGGGATAACACTGAATGAAATTGGGAAGTTAAATGATCTCAACGGAAAGGACAACCATGTTTTTGAGGACCAAGAGGTCCACCTTCAATTTTTGCAATCTTCTATGGTGCAGGAAACAGCCATGAAGACTCGGACATTAGATTCATCATCATCTGTTCTTGACTCTAGTGTCAATGCTTTTGCTGAGGAAATGACTTTACAAGTGGAAGAAAGTCAAGATGTTGCTGACTCTGCTCTTGAGTTGCCTTTGAGTGAGGTCAAACCTGAGCATAACACTTCTTCTGTTGGTTTAGACAAAGCACTTGATACAATCAATGGCCATACTAAAGAAAAAATTGATCTTCATGCCATCAAAAGCAATGTCATCTTTGGTGAATCTGTTAGGGAAGGGCTGTACATGTTTTATGATGACAATAATTTGGCATCTGAATCCATGACACCCCTGAGTAGTATCAAGTCATTATCTCCCAGTACTTCTTTTGTGAATAGCACAGAACTGTCATCAGCTATAAGAAATATCAGCCTGGATGGATTAGGATTATCTGCAGATATTTCTCTACAAAATGCAGAGTACGTTGAAGGAGCAGTTAAAGTTTCCAATCACAAGGAAGGCTATCCCCCACAACATACAAGTAAAAAATTGAGGAAAGCCAGCAGATATGTGAGAGACTTGGAAAGGAACTATATGGATCACAATAATAACAATGTTTTGCCCCAGAGTTCCCACGTCAGGGTGCATGTTGATCAGAGAAATGATCAAATCAGGGTCCACGATGGTCTGAAAGTTGATCCTTCAAAGCATCTAAGCAAGTATAATAACTTGCTAAAAGCTGGGAGGTTATGTGAATGTGTAGAATTGCTTAAAGATATGGAAATGAAGGGTTTACTAGATATGACTAAGGTTTATCATGCCAAGTTTTTCAACATCTGCAAGAAACAAAAAGCCGTAAATGAAGCCTTTGATTATGTTAGGCTTATTCCAAATCCAACATTGAGTACATTAATATGCTTATGTCAGTGTGTGCAAGCTCCCAAGATTCAGAAGGTAAATGATGCTGGTTACCCTCCAAAAGGTTCTTTCTTTTCCACCTTTCCAGTGCATGACATGTGTGTTGTGCGTTCAGGGGCTTTCCAAGTTATTCAGCTTCTTAAGGATGCTCGACTAGATCCTGATTGCAAACTTTATACCACTCTAATATCAACTTGTGGCAAGAGTGGAAAGTTGATCTAA

Protein sequence

>MsG0480022436.01.T01

MDVNKLFSNQRSLRLTSPLFVSSSRTSFLGCNHSLKPPTSSASASSLRSRNKRNKLGLLRLHSPRFVFKAALNSQLIVVVVVVTLSAVSWIHFTLNNKKKKNINQNFKGITLNEIGKLNDLNGKDNHVFEDQEVHLQFLQSSMVQETAMKTRTLDSSSSVLDSSVNAFAEEMTLQVEESQDVADSALELPLSEVKPEHNTSSVGLDKALDTINGHTKEKIDLHAIKSNVIFGESVREGLYMFYDDNNLASESMTPLSSIKSLSPSTSFVNSTELSSAIRNISLDGLGLSADISLQNAEYVEGAVKVSNHKEGYPPQHTSKKLRKASRYVRDLERNYMDHNNNNVLPQSSHVRVHVDQRNDQIRVHDGLKVDPSKHLSKYNNLLKAGRLCECVELLKDMEMKGLLDMTKVYHAKFFNICKKQKAVNEAFDYVRLIPNPTLSTLICLCQCVQAPKIQKVNDAGYPPKGSFFSTFPVHDMCVVRSGAFQVIQLLKDARLDPDCKLYTTLISTCGKSGKLI*