AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045778.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045778.01.T01 MTR_8g078870 87.538 329 1 1 1 289 1 329 0.0 563
MsG0880045778.01.T01 MTR_5g018670 77.477 333 27 3 1 289 1 329 0.0 501
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045778.01.T01 AT5G66570 68.072 332 62 2 1 288 1 332 4.33e-155 436
MsG0880045778.01.T01 AT3G50820 66.767 331 67 2 1 288 1 331 1.45e-153 432
MsG0880045778.01.T01 AT4G37230 50.602 166 21 6 160 288 1 142 1.90e-38 132

Find 71 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCAAAGCAAAACATATT+TGG 0.200360 8:-64292697 MsG0880045778.01.T01:CDS
CAATCTGTTTCTAAGGCTTT+TGG 0.217504 8:-64294311 MsG0880045778.01.T01:CDS
CTATGGTATGAGTAAGATTT+TGG 0.219313 8:+64294512 None:intergenic
ATTTGAAGGTTGCAATTATT+TGG 0.244007 8:+64294486 None:intergenic
GTCTACTCAATCTGTTTCTA+AGG 0.272916 8:-64294318 MsG0880045778.01.T01:CDS
TCGTCGAATGTCAGCCTCTT+TGG 0.284468 8:+64292720 None:intergenic
CAAGAGTGCTGCATCATCTA+AGG 0.288335 8:-64292161 MsG0880045778.01.T01:CDS
TGGACATTGGTTTGCTGTTC+CGG 0.299883 8:+64292662 None:intergenic
TTCACTTCAGTCTGACTTCA+AGG 0.303710 8:-64294258 MsG0880045778.01.T01:CDS
TCAGCCATCTGACACTGATT+TGG 0.309761 8:-64292068 MsG0880045778.01.T01:CDS
CCCGAGACTGGTGAGGTTAT+TGG 0.312679 8:-64292106 MsG0880045778.01.T01:CDS
GTGTCATGAGTTTGGTGTTT+TGG 0.330079 8:+64292511 None:intergenic
CAGCCATCTGACACTGATTT+GGG 0.336640 8:-64292067 MsG0880045778.01.T01:CDS
GTTGAAGCTTCTAAGATTGC+TGG 0.344092 8:-64294218 MsG0880045778.01.T01:CDS
GAATGCAAGTGGGGTGTTCT+TGG 0.363741 8:+64292533 None:intergenic
TGGTTCGAGGCAGAATTTCT+TGG 0.375551 8:+64292587 None:intergenic
ACCAATAACCTCACCAGTCT+CGG 0.402559 8:+64292105 None:intergenic
CGCAGTCACAGTTCAGCTTC+CGG 0.416935 8:-64292394 MsG0880045778.01.T01:CDS
AACCAATGTCCAACCATTGA+TGG 0.423797 8:-64292651 MsG0880045778.01.T01:CDS
CGAGATTGAAGGACCCTTCG+AGG 0.424168 8:-64292469 MsG0880045778.01.T01:CDS
GCTTTAACTGTGAATGAAGT+TGG 0.435876 8:+64292567 None:intergenic
TTGCAATTATTTGGTGGCTA+TGG 0.438680 8:+64294495 None:intergenic
CTGTTGCTACGTAACTTAGT+TGG 0.443147 8:+64294353 None:intergenic
TCATCTCCTCTTCCTCCAGC+TGG 0.446505 8:+64292208 None:intergenic
GGTTAAACGTGTCATGAGTT+TGG 0.447063 8:+64292503 None:intergenic
TGCAACTGCATTGTCATAAC+CGG 0.457996 8:+64292234 None:intergenic
ATGTTAAAATCCAAGGTGTT+TGG 0.461523 8:-64292027 MsG0880045778.01.T01:CDS
GCATTGCCAGCTGGAGGAAG+AGG 0.465452 8:-64292214 MsG0880045778.01.T01:CDS
TGTGTTGGTTGAGAATTTGA+AGG 0.486509 8:+64294472 None:intergenic
CTCCATCAATGGTTGGACAT+TGG 0.488395 8:+64292649 None:intergenic
TACACACTCGACGAGATTGA+AGG 0.490679 8:-64292480 MsG0880045778.01.T01:CDS
AGATGAAGAAGAACTTGGTA+AGG 0.496438 8:-64292191 MsG0880045778.01.T01:CDS
AGAGGAGATGAAGAAGAACT+TGG 0.496772 8:-64292196 MsG0880045778.01.T01:CDS
TTCTTGGACCCAAAGGGAAG+AGG 0.500046 8:-64292265 MsG0880045778.01.T01:intron
TATTTGGAAGTCAAAGGAAC+CGG 0.507916 8:-64292681 MsG0880045778.01.T01:CDS
AGACGGATCTGTCAAATTTG+AGG 0.518438 8:-64292439 MsG0880045778.01.T01:CDS
CCAATAACCTCACCAGTCTC+GGG 0.520477 8:+64292106 None:intergenic
GTCAAATTTGAGGAGAAAGA+TGG 0.521510 8:-64292429 MsG0880045778.01.T01:CDS
TGAAGGTTGCAATTATTTGG+TGG 0.523037 8:+64294489 None:intergenic
CCCTTCGAGGTTTCATCAGA+CGG 0.523837 8:-64292456 MsG0880045778.01.T01:CDS
TGAGTCTACTCCTCCATCAA+TGG 0.530867 8:+64292638 None:intergenic
TTTGGAACACTATGGAGCTA+AGG 0.538420 8:-64294288 MsG0880045778.01.T01:CDS
GCATGAGTGTAGCAGCTGCT+TGG 0.540192 8:+64294378 None:intergenic
AATGCAGTTGCATTGCCAGC+TGG 0.544104 8:-64292223 MsG0880045778.01.T01:CDS
CCAAAGGATGTTAAAATCCA+AGG 0.550235 8:-64292034 MsG0880045778.01.T01:CDS
AATAGTTAACAGAGGAGCAA+TGG 0.551821 8:-64294411 MsG0880045778.01.T01:exon
ACTCAAACTAAGCCCGAGAC+TGG 0.553515 8:-64292118 MsG0880045778.01.T01:CDS
CTGTGAATGAAGTTGGTTCG+AGG 0.555004 8:+64292574 None:intergenic
AAGGGAAGAGGTGCATCTAC+CGG 0.557014 8:-64292253 MsG0880045778.01.T01:CDS
AAAACATATTTGGAAGTCAA+AGG 0.564348 8:-64292687 MsG0880045778.01.T01:CDS
TTTCAGGGAGCAAGTGCAGA+AGG 0.564367 8:-64292747 MsG0880045778.01.T01:intron
GACTCATTCTCCTTCAAACC+AGG 0.565709 8:-64292621 MsG0880045778.01.T01:CDS
AAGAGTGCTGCATCATCTAA+GGG 0.565832 8:-64292160 MsG0880045778.01.T01:CDS
TCTACTCCTCCATCAATGGT+TGG 0.592075 8:+64292642 None:intergenic
TCATTCACAGTTAAAGCAGA+AGG 0.599528 8:-64292561 MsG0880045778.01.T01:CDS
TGTAGCAGCTGCTTGGAGTG+AGG 0.605988 8:+64294385 None:intergenic
TCCGTCTGATGAAACCTCGA+AGG 0.607218 8:+64292455 None:intergenic
GCACCCAAATCAGTGTCAGA+TGG 0.614300 8:+64292064 None:intergenic
TTCAATCTCGTCGAGTGTGT+AGG 0.617038 8:+64292482 None:intergenic
GCTGAGCATACCAAACACCT+TGG 0.618527 8:+64292017 None:intergenic
TACAGAGACAACAAGAGCAG+AGG 0.623762 8:+64294181 None:intergenic
AACTAAGCCCGAGACTGGTG+AGG 0.626306 8:-64292113 MsG0880045778.01.T01:CDS
TTTGGGTGCTAAAGCACCAA+AGG 0.633259 8:-64292050 MsG0880045778.01.T01:CDS
CGGAAGCTGAACTGTGACTG+CGG 0.636017 8:+64292395 None:intergenic
GTGCAGAAGGTGCTCCAAAG+AGG 0.638842 8:-64292734 MsG0880045778.01.T01:CDS
GCAGTTGCATTGCCAGCTGG+AGG 0.640207 8:-64292220 MsG0880045778.01.T01:CDS
GAACAGCAAATAGTTAACAG+AGG 0.645795 8:-64294419 MsG0880045778.01.T01:five_prime_UTR
AGTCACAGTTCAGCTTCCGG+TGG 0.655688 8:-64292391 MsG0880045778.01.T01:intron
CAATGTCCAACCATTGATGG+AGG 0.668753 8:-64292648 MsG0880045778.01.T01:CDS
CCGTCTGATGAAACCTCGAA+GGG 0.670853 8:+64292456 None:intergenic
AGAGTGCTGCATCATCTAAG+GGG 0.683787 8:-64292159 MsG0880045778.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAATATAAATTAATTTCA+GGG - Chr8:64293768-64293787 MsG0880045778.01.T01:intron 10.0%
!! TAAGAATATAAATTAATTTC+AGG - Chr8:64293767-64293786 MsG0880045778.01.T01:intron 10.0%
!!! AAAAAAATATATTTGCATTT+TGG - Chr8:64293221-64293240 MsG0880045778.01.T01:intron 10.0%
!!! AGTATTAATATTTATTTTTG+CGG + Chr8:64292961-64292980 None:intergenic 10.0%
!!! CAAGATAAAATTAATTTTTT+TGG + Chr8:64292627-64292646 None:intergenic 10.0%
!! AATTGAATAAAACTTTAGTA+TGG + Chr8:64292706-64292725 None:intergenic 15.0%
!! ATATTAATATTACACAAACA+CGG + Chr8:64293164-64293183 None:intergenic 15.0%
!! TTAATTTATATTCTTACTCT+TGG + Chr8:64293763-64293782 None:intergenic 15.0%
!!! GTTATAGATCATTTTAATTA+AGG - Chr8:64292556-64292575 MsG0880045778.01.T01:CDS 15.0%
!!! TATACTATTGTTGTTATTAT+TGG - Chr8:64292498-64292517 MsG0880045778.01.T01:CDS 15.0%
!! AATTCAAAGCAAAACATATT+TGG - Chr8:64293833-64293852 MsG0880045778.01.T01:intron 20.0%
!! TTGAAATCTTTCCAAATAAA+TGG - Chr8:64292738-64292757 MsG0880045778.01.T01:CDS 20.0%
!! TTTGGAAAGATTTCAAAATA+CGG + Chr8:64292734-64292753 None:intergenic 20.0%
!!! ATAGATCATTTTAATTAAGG+AGG - Chr8:64292559-64292578 MsG0880045778.01.T01:CDS 20.0%
!!! ATGTGATTTTTATTTTGGAT+CGG - Chr8:64293337-64293356 MsG0880045778.01.T01:intron 20.0%
!!! ATTTTATCTTGTAACATAGT+AGG - Chr8:64292636-64292655 MsG0880045778.01.T01:CDS 20.0%
!!! TAATATTTATTTTTGCGGTT+CGG + Chr8:64292956-64292975 None:intergenic 20.0%
! AAAACATATTTGGAAGTCAA+AGG - Chr8:64293843-64293862 MsG0880045778.01.T01:intron 25.0%
! AACTTGAGCATGATATTAAA+AGG + Chr8:64292679-64292698 None:intergenic 25.0%
! ACATTACATAACCAATACAA+GGG - Chr8:64293498-64293517 MsG0880045778.01.T01:intron 25.0%
! AGCAAATATACAACAAAACA+AGG - Chr8:64293422-64293441 MsG0880045778.01.T01:intron 25.0%
! ATTTGAAGGTTGCAATTATT+TGG + Chr8:64292047-64292066 None:intergenic 25.0%
! CAAATATATGCGGTTTAATT+TGG + Chr8:64293263-64293282 None:intergenic 25.0%
! CAAATTAAACCGCATATATT+TGG - Chr8:64293261-64293280 MsG0880045778.01.T01:intron 25.0%
! GACTAAATCATCCATTTATT+TGG + Chr8:64292752-64292771 None:intergenic 25.0%
! TCCAAAATAAAAATCACATG+CGG + Chr8:64293336-64293355 None:intergenic 25.0%
!!! CAAACAAACTTGTTTTCAAT+AGG + Chr8:64292087-64292106 None:intergenic 25.0%
!!! CAAATATATTCGGTTTTTTG+CGG + Chr8:64292850-64292869 None:intergenic 25.0%
AACCTAACTTTAATTCACCT+CGG - Chr8:64293547-64293566 MsG0880045778.01.T01:intron 30.0%
AATAAAAATCACATGCGGTT+CGG + Chr8:64293331-64293350 None:intergenic 30.0%
AGGTGAATTAAAGTTAGGTT+GGG + Chr8:64293547-64293566 None:intergenic 30.0%
ATGATCAAAATCCACTTGAA+TGG - Chr8:64293658-64293677 MsG0880045778.01.T01:intron 30.0%
CAAACGCATCCAAATATATT+CGG + Chr8:64292860-64292879 None:intergenic 30.0%
CACAAACACGGTAAAATAAT+AGG + Chr8:64293152-64293171 None:intergenic 30.0%
CACATTACATAACCAATACA+AGG - Chr8:64293497-64293516 MsG0880045778.01.T01:intron 30.0%
CATTACATAACCAATACAAG+GGG - Chr8:64293499-64293518 MsG0880045778.01.T01:intron 30.0%
CGCAAAAAACCGAATATATT+TGG - Chr8:64292848-64292867 MsG0880045778.01.T01:intron 30.0%
TAAACCGCATATATTTGGAT+CGG - Chr8:64293266-64293285 MsG0880045778.01.T01:intron 30.0%
TAATTAGTATCCCATTCAAG+TGG + Chr8:64293672-64293691 None:intergenic 30.0%
TAGACAATAACAAGTTGCAA+TGG - Chr8:64292587-64292606 MsG0880045778.01.T01:CDS 30.0%
TGATCAAAATCCACTTGAAT+GGG - Chr8:64293659-64293678 MsG0880045778.01.T01:intron 30.0%
TTTGTAAAAACCGCTAAGAT+CGG - Chr8:64292888-64292907 MsG0880045778.01.T01:intron 30.0%
! ATGTTAAAATCCAAGGTGTT+TGG - Chr8:64294503-64294522 MsG0880045778.01.T01:five_prime_UTR 30.0%
! CTATGGTATGAGTAAGATTT+TGG + Chr8:64292021-64292040 None:intergenic 30.0%
! GTAAGATTTTGGATAGGATA+AGG + Chr8:64292010-64292029 None:intergenic 30.0%
! GTATGAGTAAGATTTTGGAT+AGG + Chr8:64292016-64292035 None:intergenic 30.0%
!! ACCGCATGTGATTTTTATTT+TGG - Chr8:64293332-64293351 MsG0880045778.01.T01:intron 30.0%
!! ATATGCGGTTTAATTTGGAT+CGG + Chr8:64293258-64293277 None:intergenic 30.0%
!! ATTGGATTAGTTGTGATGAA+TGG - Chr8:64292516-64292535 MsG0880045778.01.T01:CDS 30.0%
!! ATTGTATTTTCCTGGTTTGA+AGG + Chr8:64293922-64293941 None:intergenic 30.0%
!! GTATTGGTTATGTAATGTGA+TGG + Chr8:64293496-64293515 None:intergenic 30.0%
!! GTTTTCAATAGGTTTTGTGT+TGG + Chr8:64292076-64292095 None:intergenic 30.0%
!! TTAAAGTTAGGTTGGGAATT+AGG + Chr8:64293540-64293559 None:intergenic 30.0%
!!! GTTTAATTTGGATCGGTTTT+TGG + Chr8:64293251-64293270 None:intergenic 30.0%
!!! TTTGCGGTTTTATTTTGGAT+CGG + Chr8:64292806-64292825 None:intergenic 30.0%
AATAGTTAACAGAGGAGCAA+TGG - Chr8:64292119-64292138 MsG0880045778.01.T01:CDS 35.0%
ACATCATAAACCCCTTGTAT+TGG + Chr8:64293512-64293531 None:intergenic 35.0%
AGATGAAGAAGAACTTGGTA+AGG - Chr8:64294339-64294358 MsG0880045778.01.T01:CDS 35.0%
ATCCGAGGTGAATTAAAGTT+AGG + Chr8:64293552-64293571 None:intergenic 35.0%
CCAAAGGATGTTAAAATCCA+AGG - Chr8:64294496-64294515 MsG0880045778.01.T01:five_prime_UTR 35.0%
CGAATATATTTGGATGCGTT+TGG - Chr8:64292858-64292877 MsG0880045778.01.T01:intron 35.0%
GAACAGCAAATAGTTAACAG+AGG - Chr8:64292111-64292130 MsG0880045778.01.T01:CDS 35.0%
GAGGTGAATTAAAGTTAGGT+TGG + Chr8:64293548-64293567 None:intergenic 35.0%
GCTTTAACTGTGAATGAAGT+TGG + Chr8:64293966-64293985 None:intergenic 35.0%
GTCAAATTTGAGGAGAAAGA+TGG - Chr8:64294101-64294120 MsG0880045778.01.T01:intron 35.0%
TATTTGGAAGTCAAAGGAAC+CGG - Chr8:64293849-64293868 MsG0880045778.01.T01:intron 35.0%
TATTTGGTACCATCATACAG+AGG - Chr8:64294235-64294254 MsG0880045778.01.T01:CDS 35.0%
TCATTCACAGTTAAAGCAGA+AGG - Chr8:64293969-64293988 MsG0880045778.01.T01:intron 35.0%
TGAAGGTTGCAATTATTTGG+TGG + Chr8:64292044-64292063 None:intergenic 35.0%
TGATGCTACCAATTGTTTGA+TGG + Chr8:64294188-64294207 None:intergenic 35.0%
! ATCAAACAATTGGTAGCATC+AGG - Chr8:64294187-64294206 MsG0880045778.01.T01:CDS 35.0%
! CCTTTTCACCATCAAACAAT+TGG - Chr8:64294177-64294196 MsG0880045778.01.T01:intron 35.0%
! TCAAACAATTGGTAGCATCA+GGG - Chr8:64294188-64294207 MsG0880045778.01.T01:CDS 35.0%
! TTCTTGGCATTGTATTTTCC+TGG + Chr8:64293930-64293949 None:intergenic 35.0%
! TTGCAATTATTTGGTGGCTA+TGG + Chr8:64292038-64292057 None:intergenic 35.0%
! TTGCTACTTAGTCTCTAGTA+GGG + Chr8:64293407-64293426 None:intergenic 35.0%
! TTTGCGGTTTTCGGTTTTTT+TGG + Chr8:64292834-64292853 None:intergenic 35.0%
! TTTGCTACTTAGTCTCTAGT+AGG + Chr8:64293408-64293427 None:intergenic 35.0%
!! CCAATTGTTTGATGGTGAAA+AGG + Chr8:64294180-64294199 None:intergenic 35.0%
!! CCTTGGATTTTAACATCCTT+TGG + Chr8:64294499-64294518 None:intergenic 35.0%
!! GTCTACTCAATCTGTTTCTA+AGG - Chr8:64292212-64292231 MsG0880045778.01.T01:CDS 35.0%
!! TGTGTTGGTTGAGAATTTGA+AGG + Chr8:64292061-64292080 None:intergenic 35.0%
!! TGTTTGATGGTGAAAAGGAA+TGG + Chr8:64294175-64294194 None:intergenic 35.0%
!!! ATCGGTTTGCGGTTTTATTT+TGG + Chr8:64292811-64292830 None:intergenic 35.0%
!!! ATTCGGTTTTTTGCGGTTTT+CGG + Chr8:64292843-64292862 None:intergenic 35.0%
!!! CAATCTGTTTCTAAGGCTTT+TGG - Chr8:64292219-64292238 MsG0880045778.01.T01:CDS 35.0%
!!! GGTTTTATTTTGGATCGGTT+TGG + Chr8:64292801-64292820 None:intergenic 35.0%
!!! GGTTTTCGGTTTTTTTGGAT+CGG + Chr8:64292829-64292848 None:intergenic 35.0%
!!! TGTTTCTAAGGCTTTTGGTT+TGG - Chr8:64292224-64292243 MsG0880045778.01.T01:CDS 35.0%
!!! TTTATTTTTGCGGTTCGGTT+TGG + Chr8:64292951-64292970 None:intergenic 35.0%
AAAAACCGCTAAGATCGGAT+CGG - Chr8:64292893-64292912 MsG0880045778.01.T01:intron 40.0%
AAAGAGCTTCCTCTGTATGA+TGG + Chr8:64294247-64294266 None:intergenic 40.0%
AACCAATGTCCAACCATTGA+TGG - Chr8:64293879-64293898 MsG0880045778.01.T01:intron 40.0%
AGACGGATCTGTCAAATTTG+AGG - Chr8:64294091-64294110 MsG0880045778.01.T01:intron 40.0%
AGAGGAGATGAAGAAGAACT+TGG - Chr8:64294334-64294353 MsG0880045778.01.T01:CDS 40.0%
ATACAGAGGAAGCTCTTTCT+TGG - Chr8:64294249-64294268 MsG0880045778.01.T01:CDS 40.0%
CGAACCGATCCAAATATATG+CGG + Chr8:64293273-64293292 None:intergenic 40.0%
CGCATATATTTGGATCGGTT+CGG - Chr8:64293271-64293290 MsG0880045778.01.T01:intron 40.0%
CTGTTGCTACGTAACTTAGT+TGG + Chr8:64292180-64292199 None:intergenic 40.0%
GGTTAAACGTGTCATGAGTT+TGG + Chr8:64294030-64294049 None:intergenic 40.0%
TGCAACTGCATTGTCATAAC+CGG + Chr8:64294299-64294318 None:intergenic 40.0%
TTCACTTCAGTCTGACTTCA+AGG - Chr8:64292272-64292291 MsG0880045778.01.T01:intron 40.0%
! TGCTACTTAGTCTCTAGTAG+GGG + Chr8:64293406-64293425 None:intergenic 40.0%
! TTTGGAACACTATGGAGCTA+AGG - Chr8:64292242-64292261 MsG0880045778.01.T01:CDS 40.0%
!! AAGAGTGCTGCATCATCTAA+GGG - Chr8:64294370-64294389 MsG0880045778.01.T01:CDS 40.0%
!! ATATTTGGATCGGTTCGGTT+CGG - Chr8:64293276-64293295 MsG0880045778.01.T01:intron 40.0%
!! GTTGAAGCTTCTAAGATTGC+TGG - Chr8:64292312-64292331 MsG0880045778.01.T01:intron 40.0%
!!! GCTTTTGGTTTGGAACACTA+TGG - Chr8:64292234-64292253 MsG0880045778.01.T01:CDS 40.0%
!!! GGTTTTTTTGGATCGGTTTG+CGG + Chr8:64292822-64292841 None:intergenic 40.0%
!!! GTGTCATGAGTTTGGTGTTT+TGG + Chr8:64294022-64294041 None:intergenic 40.0%
!!! TGGTGTTTTGGAATGCAAGT+GGG + Chr8:64294010-64294029 None:intergenic 40.0%
!!! TTGGTGTTTTGGAATGCAAG+TGG + Chr8:64294011-64294030 None:intergenic 40.0%
AAGCTCTTTCTTGGACCCAA+AGG - Chr8:64294258-64294277 MsG0880045778.01.T01:CDS 45.0%
ACCAATAACCTCACCAGTCT+CGG + Chr8:64294428-64294447 None:intergenic 45.0%
AGCTCTTTCTTGGACCCAAA+GGG - Chr8:64294259-64294278 MsG0880045778.01.T01:CDS 45.0%
AGTTGTGATGAATGGTCTGC+TGG - Chr8:64292524-64292543 MsG0880045778.01.T01:CDS 45.0%
ATTTAGTCCCCCTAGAGACT+AGG - Chr8:64292764-64292783 MsG0880045778.01.T01:intron 45.0%
CAATGTCCAACCATTGATGG+AGG - Chr8:64293882-64293901 MsG0880045778.01.T01:intron 45.0%
CTATCTCTGCAATCAGAGGT+CGG + Chr8:64293635-64293654 None:intergenic 45.0%
CTCCATCAATGGTTGGACAT+TGG + Chr8:64293884-64293903 None:intergenic 45.0%
GAAATCCGATCCGATCTTAG+CGG + Chr8:64292901-64292920 None:intergenic 45.0%
GACCTCTGATTGCAGAGATA+GGG - Chr8:64293634-64293653 MsG0880045778.01.T01:intron 45.0%
GACTCATTCTCCTTCAAACC+AGG - Chr8:64293909-64293928 MsG0880045778.01.T01:intron 45.0%
GAGCTTCAGTGGTGAGTATT+TGG - Chr8:64294219-64294238 MsG0880045778.01.T01:CDS 45.0%
GCTAAGATCGGATCGGATTT+CGG - Chr8:64292900-64292919 MsG0880045778.01.T01:intron 45.0%
GGTCAGCTGTTGGATTTCAA+AGG - Chr8:64293595-64293614 MsG0880045778.01.T01:intron 45.0%
TACACACTCGACGAGATTGA+AGG - Chr8:64294050-64294069 MsG0880045778.01.T01:intron 45.0%
TACAGAGACAACAAGAGCAG+AGG + Chr8:64292352-64292371 None:intergenic 45.0%
TAGATGCACCTCTTCCCTTT+GGG + Chr8:64294276-64294295 None:intergenic 45.0%
TCTACTCCTCCATCAATGGT+TGG + Chr8:64293891-64293910 None:intergenic 45.0%
TCTCATGTTTCAGCAACCAG+AGG - Chr8:64293574-64293593 MsG0880045778.01.T01:intron 45.0%
TCTGGTTGCTGAAACATGAG+AGG + Chr8:64293575-64293594 None:intergenic 45.0%
TGAGTCTACTCCTCCATCAA+TGG + Chr8:64293895-64293914 None:intergenic 45.0%
TGGTTCGAGGCAGAATTTCT+TGG + Chr8:64293946-64293965 None:intergenic 45.0%
TTCAATCTCGTCGAGTGTGT+AGG + Chr8:64294051-64294070 None:intergenic 45.0%
TTCCCTATCTCTGCAATCAG+AGG + Chr8:64293639-64293658 None:intergenic 45.0%
TTGAACACCCCTAGTCTCTA+GGG + Chr8:64292776-64292795 None:intergenic 45.0%
TTTAGTCCCCCTAGAGACTA+GGG - Chr8:64292765-64292784 MsG0880045778.01.T01:intron 45.0%
TTTGAACACCCCTAGTCTCT+AGG + Chr8:64292777-64292796 None:intergenic 45.0%
! TCAGCCATCTGACACTGATT+TGG - Chr8:64294462-64294481 MsG0880045778.01.T01:five_prime_UTR 45.0%
! TTTGGGTGCTAAAGCACCAA+AGG - Chr8:64294480-64294499 MsG0880045778.01.T01:five_prime_UTR 45.0%
!! AAATCACATGCGGTTCGGTT+CGG + Chr8:64293326-64293345 None:intergenic 45.0%
!! AGAGTGCTGCATCATCTAAG+GGG - Chr8:64294371-64294390 MsG0880045778.01.T01:CDS 45.0%
!! CAAGAGTGCTGCATCATCTA+AGG - Chr8:64294369-64294388 MsG0880045778.01.T01:CDS 45.0%
!! CAGCCATCTGACACTGATTT+GGG - Chr8:64294463-64294482 MsG0880045778.01.T01:five_prime_UTR 45.0%
!! CTGTGAATGAAGTTGGTTCG+AGG + Chr8:64293959-64293978 None:intergenic 45.0%
!! TGGACATTGGTTTGCTGTTC+CGG + Chr8:64293871-64293890 None:intergenic 45.0%
!!! GGTGTTTTGGAATGCAAGTG+GGG + Chr8:64294009-64294028 None:intergenic 45.0%
!!! TTTTGCGGTTCGGTTTGGTT+CGG + Chr8:64292946-64292965 None:intergenic 45.0%
!!! AAGATAAAATTAATTTTTTT+GGG + Chr8:64292626-64292645 None:intergenic 5.0%
AATGCAGTTGCATTGCCAGC+TGG - Chr8:64294307-64294326 MsG0880045778.01.T01:CDS 50.0%
ACTCAAACTAAGCCCGAGAC+TGG - Chr8:64294412-64294431 MsG0880045778.01.T01:exon 50.0%
CCAATAACCTCACCAGTCTC+GGG + Chr8:64294427-64294446 None:intergenic 50.0%
CCCTTCGAGGTTTCATCAGA+CGG - Chr8:64294074-64294093 MsG0880045778.01.T01:intron 50.0%
CCGTCTGATGAAACCTCGAA+GGG + Chr8:64294077-64294096 None:intergenic 50.0%
CGACCTCTGATTGCAGAGAT+AGG - Chr8:64293633-64293652 MsG0880045778.01.T01:intron 50.0%
CTGAAACATGAGAGGATCCG+AGG + Chr8:64293567-64293586 None:intergenic 50.0%
GAAATCCAACAGCTGACCTC+TGG + Chr8:64293593-64293612 None:intergenic 50.0%
GCACCCAAATCAGTGTCAGA+TGG + Chr8:64294469-64294488 None:intergenic 50.0%
GCTGAGCATACCAAACACCT+TGG + Chr8:64294516-64294535 None:intergenic 50.0%
GTAGATGCACCTCTTCCCTT+TGG + Chr8:64294277-64294296 None:intergenic 50.0%
TACTCACCACTGAAGCTCTC+TGG + Chr8:64294217-64294236 None:intergenic 50.0%
TCCGTCTGATGAAACCTCGA+AGG + Chr8:64294078-64294097 None:intergenic 50.0%
TCGTCGAATGTCAGCCTCTT+TGG + Chr8:64293813-64293832 None:intergenic 50.0%
TGAACACCCCTAGTCTCTAG+GGG + Chr8:64292775-64292794 None:intergenic 50.0%
TTAGTCCCCCTAGAGACTAG+GGG - Chr8:64292766-64292785 MsG0880045778.01.T01:intron 50.0%
TTCTTGGACCCAAAGGGAAG+AGG - Chr8:64294265-64294284 MsG0880045778.01.T01:CDS 50.0%
TTTCAGGGAGCAAGTGCAGA+AGG - Chr8:64293783-64293802 MsG0880045778.01.T01:intron 50.0%
! AAGGGAAGAGGTGCATCTAC+CGG - Chr8:64294277-64294296 MsG0880045778.01.T01:CDS 50.0%
! GAATGCAAGTGGGGTGTTCT+TGG + Chr8:64294000-64294019 None:intergenic 50.0%
!! TGCGGTTTGGATCGGTTTTG+AGG + Chr8:64293374-64293393 None:intergenic 50.0%
AACTAAGCCCGAGACTGGTG+AGG - Chr8:64294417-64294436 MsG0880045778.01.T01:five_prime_UTR 55.0%
AGCAACCAGAGGTCAGCTGT+TGG - Chr8:64293585-64293604 MsG0880045778.01.T01:intron 55.0%
AGTCACAGTTCAGCTTCCGG+TGG - Chr8:64294139-64294158 MsG0880045778.01.T01:intron 55.0%
CCCGAGACTGGTGAGGTTAT+TGG - Chr8:64294424-64294443 MsG0880045778.01.T01:five_prime_UTR 55.0%
CGAGATTGAAGGACCCTTCG+AGG - Chr8:64294061-64294080 MsG0880045778.01.T01:intron 55.0%
CGCAGTCACAGTTCAGCTTC+CGG - Chr8:64294136-64294155 MsG0880045778.01.T01:intron 55.0%
CGGAAGCTGAACTGTGACTG+CGG + Chr8:64294138-64294157 None:intergenic 55.0%
GAACACCCCTAGTCTCTAGG+GGG + Chr8:64292774-64292793 None:intergenic 55.0%
GCATGAGTGTAGCAGCTGCT+TGG + Chr8:64292155-64292174 None:intergenic 55.0%
TCATCTCCTCTTCCTCCAGC+TGG + Chr8:64294325-64294344 None:intergenic 55.0%
TGCAATCAGAGGTCGGCTGA+TGG + Chr8:64293628-64293647 None:intergenic 55.0%
TGTAGCAGCTGCTTGGAGTG+AGG + Chr8:64292148-64292167 None:intergenic 55.0%
!! ACATGCGGTTCGGTTCGGTT+TGG + Chr8:64293321-64293340 None:intergenic 55.0%
!! CGGTTCGGTTTGGTTCGGTT+CGG + Chr8:64292941-64292960 None:intergenic 55.0%
!! GTCTCTAGTAGGGGTGTTCG+CGG + Chr8:64293397-64293416 None:intergenic 55.0%
!! GTGCAGAAGGTGCTCCAAAG+AGG - Chr8:64293796-64293815 MsG0880045778.01.T01:intron 55.0%
GAATGGCACACGCTCACCAC+CGG + Chr8:64294158-64294177 None:intergenic 60.0%
GCAGTTGCATTGCCAGCTGG+AGG - Chr8:64294310-64294329 MsG0880045778.01.T01:CDS 60.0%
GCATTGCCAGCTGGAGGAAG+AGG - Chr8:64294316-64294335 MsG0880045778.01.T01:CDS 60.0%
GGGAAGCCAGAGAGCTTCAG+TGG - Chr8:64294208-64294227 MsG0880045778.01.T01:CDS 60.0%
! GTTCGCGGTGCGGTTTGGAT+CGG + Chr8:64293382-64293401 None:intergenic 60.0%
!! TAGTAGGGGTGTTCGCGGTG+CGG + Chr8:64293392-64293411 None:intergenic 60.0%
! GGGGTGTTCGCGGTGCGGTT+TGG + Chr8:64293387-64293406 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 64292006 64294546 64292006 ID=MsG0880045778.01;Name=MsG0880045778.01
Chr8 mRNA 64292006 64294546 64292006 ID=MsG0880045778.01.T01;Parent=MsG0880045778.01;Name=MsG0880045778.01.T01;_AED=0.50;_eAED=0.50;_QI=132|0.5|0.33|1|1|1|3|0|289
Chr8 exon 64292006 64292272 64292006 ID=MsG0880045778.01.T01:exon:13404;Parent=MsG0880045778.01.T01
Chr8 exon 64292392 64292763 64292392 ID=MsG0880045778.01.T01:exon:13403;Parent=MsG0880045778.01.T01
Chr8 exon 64294184 64294546 64294184 ID=MsG0880045778.01.T01:exon:13402;Parent=MsG0880045778.01.T01
Chr8 five_prime_UTR 64294415 64294546 64294415 ID=MsG0880045778.01.T01:five_prime_utr;Parent=MsG0880045778.01.T01
Chr8 CDS 64294184 64294414 64294184 ID=MsG0880045778.01.T01:cds;Parent=MsG0880045778.01.T01
Chr8 CDS 64292392 64292763 64292392 ID=MsG0880045778.01.T01:cds;Parent=MsG0880045778.01.T01
Chr8 CDS 64292006 64292272 64292006 ID=MsG0880045778.01.T01:cds;Parent=MsG0880045778.01.T01
Gene Sequence

>MsG0880045778.01.T01

ATGGCAGCCTCACTCCAAGCAGCTGCTACACTCATGCAACCAACTAAGTTACGTAGCAACAGTTTGCAGCTTAAGTCTACTCAATCTGTTTCTAAGGCTTTTGGTTTGGAACACTATGGAGCTAAGGTTACTTGTTCACTTCAGTCTGACTTCAAGGAGTTGACTCACAAGTTTGTTGAAGCTTCTAAGATTGCTGGATTTGCTCTTGCTACCTCTGCTCTTGTTGTCTCTGGAGCAAGTGCAGAAGGTGCTCCAAAGAGGCTGACATTCGACGAAATTCAAAGCAAAACATATTTGGAAGTCAAAGGAACCGGAACAGCAAACCAATGTCCAACCATTGATGGAGGAGTAGACTCATTCTCCTTCAAACCAGGAAAATACAATGCCAAGAAATTCTGCCTCGAACCAACTTCATTCACAGTTAAAGCAGAAGGTGTAACCAAGAACACCCCACTTGCATTCCAAAACACCAAACTCATGACACGTTTAACCTACACACTCGACGAGATTGAAGGACCCTTCGAGGTTTCATCAGACGGATCTGTCAAATTTGAGGAGAAAGATGGCATTGACTACGCCGCAGTCACAGTTCAGCTTCCGGTGGGAAGAGGTGCATCTACCGGTTATGACAATGCAGTTGCATTGCCAGCTGGAGGAAGAGGAGATGAAGAAGAACTTGGTAAGGAAAACAACAAGAGTGCTGCATCATCTAAGGGGAAAATCACATTGAGTGTTACTCAAACTAAGCCCGAGACTGGTGAGGTTATTGGTGTGTTTGAGAGTATTCAGCCATCTGACACTGATTTGGGTGCTAAAGCACCAAAGGATGTTAAAATCCAAGGTGTTTGGTATGCTCAGCTTGAGTCATAG

Protein sequence

>MsG0880045778.01.T01

MAASLQAAATLMQPTKLRSNSLQLKSTQSVSKAFGLEHYGAKVTCSLQSDFKELTHKFVEASKIAGFALATSALVVSGASAEGAPKRLTFDEIQSKTYLEVKGTGTANQCPTIDGGVDSFSFKPGKYNAKKFCLEPTSFTVKAEGVTKNTPLAFQNTKLMTRLTYTLDEIEGPFEVSSDGSVKFEEKDGIDYAAVTVQLPVGRGASTGYDNAVALPAGGRGDEEELGKENNKSAASSKGKITLSVTQTKPETGEVIGVFESIQPSDTDLGAKAPKDVKIQGVWYAQLES*