AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016790.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016790.01.T01 MTR_3g095540 98.837 172 2 0 1 172 1 172 1.10e-124 348
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016790.01.T01 AT5G64040 70.455 176 43 4 1 172 1 171 1.21e-82 241
MsG0380016790.01.T01 AT5G64040 66.667 147 40 4 1 143 1 142 6.41e-58 179

Find 57 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACTTGCTCTTGATTCTT+TGG 0.156495 3:+87949147 None:intergenic
GAGAAATGCTCTTGCTTTAT+TGG 0.157047 3:-87949119 MsG0380016790.01.T01:CDS
GCTGCATCACCAGGGGTTTC+AGG 0.166988 3:-87949217 MsG0380016790.01.T01:CDS
GCTCTTGATTCTTTGGCTTC+AGG 0.250361 3:+87949154 None:intergenic
ACCATTCATTACAGAAGATT+TGG 0.264682 3:-87947291 MsG0380016790.01.T01:CDS
ATTAGGCATGCCTCTCCTTT+TGG 0.321597 3:-87947071 MsG0380016790.01.T01:three_prime_UTR
GTGCCCTCTGCTGCATCACC+AGG 0.354143 3:-87949226 MsG0380016790.01.T01:CDS
GCCAGCATTGGCAGAAGAAT+TGG 0.362944 3:+87949063 None:intergenic
AGAGCATATACAGTGCAATT+TGG 0.365802 3:-87947477 MsG0380016790.01.T01:CDS
GCTTGTAGCTATGCCATATC+TGG 0.368961 3:-87949277 MsG0380016790.01.T01:CDS
CCTTCTGTTTAGCAAGATCT+TGG 0.372726 3:+87947421 None:intergenic
AGATTGCATTGATTTCCTAT+TGG 0.400341 3:+87949464 None:intergenic
AGAGAACAAGATTTGCCAAT+AGG 0.418223 3:-87949479 MsG0380016790.01.T01:five_prime_UTR
TGGCAACCAGTGAAATTCTC+AGG 0.421964 3:+87947441 None:intergenic
TCTTGCAAAGTTTGCTCCAC+TGG 0.422179 3:+87947497 None:intergenic
CTGAAACAGCAGTGGTGAAA+AGG 0.440735 3:+87949089 None:intergenic
ATTGAGCTCAGCACCAGATA+TGG 0.446987 3:+87949264 None:intergenic
TTGTGGTTGGCGTGTGGATA+AGG 0.447550 3:+87949439 None:intergenic
TCCAATTCTTCTGCCAATGC+TGG 0.447703 3:-87949064 MsG0380016790.01.T01:CDS
ACTTGTTGAGCCTTGATCAA+TGG 0.461753 3:+87949184 None:intergenic
TCCAAATCTTCTGTAATGAA+TGG 0.478789 3:+87947290 None:intergenic
AAGTTCCCTGAGAATTTCAC+TGG 0.504808 3:-87947447 MsG0380016790.01.T01:CDS
CTTATGTTGCAAGGAACAAA+GGG 0.505444 3:+87949404 None:intergenic
TGCCCTCTGCTGCATCACCA+GGG 0.515970 3:-87949225 MsG0380016790.01.T01:CDS
GACTCTAGAAGAGTACCAAA+AGG 0.517836 3:+87947056 None:intergenic
TGCAAAGTTTGCTCCACTGG+TGG 0.527812 3:+87947500 None:intergenic
TTCATCAATAACGCCAGCAT+TGG 0.528232 3:+87949051 None:intergenic
GCCCTCTGCTGCATCACCAG+GGG 0.536993 3:-87949224 MsG0380016790.01.T01:CDS
TGAAACAGCAGTGGTGAAAA+GGG 0.537677 3:+87949090 None:intergenic
GGAACTTGAATGTGAAGGAA+AGG 0.538060 3:-87947270 MsG0380016790.01.T01:CDS
ACTTATGTTGCAAGGAACAA+AGG 0.551246 3:+87949403 None:intergenic
CATTGCAGCCATGTGTATTG+TGG 0.551968 3:+87949315 None:intergenic
TATCAAGCTACCATTGATCA+AGG 0.554113 3:-87949194 MsG0380016790.01.T01:CDS
TTAAGTCAACTTATGTTGCA+AGG 0.560354 3:+87949395 None:intergenic
AATCAAGAGCAAGTGATGGA+AGG 0.560441 3:-87949141 MsG0380016790.01.T01:CDS
AACCCCTGGTGATGCAGCAG+AGG 0.560571 3:+87949222 None:intergenic
AAAGAATCAAGAGCAAGTGA+TGG 0.584476 3:-87949145 MsG0380016790.01.T01:CDS
AGCATTGGCAGAAGAATTGG+AGG 0.586473 3:+87949066 None:intergenic
AGGAATTGAATGACAAGAAG+AGG 0.586876 3:-87947527 MsG0380016790.01.T01:CDS
ACCCCTGGTGATGCAGCAGA+GGG 0.591324 3:+87949223 None:intergenic
CCAAGATCTTGCTAAACAGA+AGG 0.600518 3:-87947421 MsG0380016790.01.T01:intron
AAGAAGAGGCTAGCCACCAG+TGG 0.614610 3:-87947513 MsG0380016790.01.T01:CDS
GTGTAATCAAAGATTGTGGT+TGG 0.615544 3:+87949426 None:intergenic
TGAAAAGAGCAAGGCCAACA+AGG 0.620440 3:-87949023 MsG0380016790.01.T01:intron
GATTTGGAACTTGAATGTGA+AGG 0.620793 3:-87947275 MsG0380016790.01.T01:CDS
GGCAACCAGTGAAATTCTCA+GGG 0.626628 3:+87947442 None:intergenic
TAGAAGAGTACCAAAAGGAG+AGG 0.628978 3:+87947061 None:intergenic
AAGGGTGTAATCAAAGATTG+TGG 0.631735 3:+87949422 None:intergenic
CTAGTAATCCACAATACACA+TGG 0.633671 3:-87949323 MsG0380016790.01.T01:exon
CTTCTAGAGTCTTAACTGTG+TGG 0.634201 3:-87947044 MsG0380016790.01.T01:three_prime_UTR
CAAAGATTGTGGTTGGCGTG+TGG 0.640195 3:+87949433 None:intergenic
TGAATACCTTGAAAAGAGCA+AGG 0.648345 3:-87949032 MsG0380016790.01.T01:CDS
ATTTCAAAGAGAACAACACT+AGG 0.650345 3:+87947185 None:intergenic
GGAAAGGACAAATACAAGTG+TGG 0.658819 3:-87947254 MsG0380016790.01.T01:CDS
TGATGTGTATCAGAGTCCAA+AGG 0.665859 3:+87949363 None:intergenic
ATTGGAGGCTGAAACAGCAG+TGG 0.683074 3:+87949081 None:intergenic
AGCTTGATACCTGAAACCCC+TGG 0.689347 3:+87949208 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATCAAAAAAAAATATTTAC+AGG - Chr3:87948753-87948772 MsG0380016790.01.T01:intron 10.0%
!! ATCAAAAAAAAATATTTACA+GGG - Chr3:87948754-87948773 MsG0380016790.01.T01:intron 10.0%
!! GTTATAAAAATGTTTAAATT+AGG - Chr3:87949391-87949410 MsG0380016790.01.T01:five_prime_UTR 10.0%
!! TAAAAAAAAATATTTACATG+GGG + Chr3:87948589-87948608 None:intergenic 10.0%
!! TAAAAATTAAGAAAATTCAA+GGG + Chr3:87948826-87948845 None:intergenic 10.0%
!!! AAAACATAAATTTTTAAGTT+TGG + Chr3:87947869-87947888 None:intergenic 10.0%
!!! AAAATATAAATTTTCAAGTT+CGG - Chr3:87948307-87948326 MsG0380016790.01.T01:intron 10.0%
!!! AAACATAAATTTTTAAGTTT+GGG + Chr3:87947868-87947887 None:intergenic 10.0%
!!! AATTTTATTTTATTGTGAAA+TGG + Chr3:87949479-87949498 None:intergenic 10.0%
!!! TCAAAACAATTTTTTTTTTA+CGG + Chr3:87948619-87948638 None:intergenic 10.0%
!! AAAAATATGGTATATTATCA+AGG + Chr3:87949333-87949352 None:intergenic 15.0%
!! CTAAAAATTAAGAAAATTCA+AGG + Chr3:87948827-87948846 None:intergenic 15.0%
!! TATTAAAGACAAACAATTAA+CGG - Chr3:87947912-87947931 MsG0380016790.01.T01:intron 15.0%
!! TCAAAAAAAAATATTTACAG+GGG - Chr3:87948755-87948774 MsG0380016790.01.T01:intron 15.0%
!! TTCTTATTATAGGATAAAAT+TGG + Chr3:87947534-87947553 None:intergenic 15.0%
!! TTTAAATAAGTCATAAGTTA+TGG - Chr3:87948147-87948166 MsG0380016790.01.T01:intron 15.0%
!!! AAAACAATTTTTTTTTTACG+GGG + Chr3:87948617-87948636 None:intergenic 15.0%
!!! AAATATAAATTTTCAAGTTC+GGG - Chr3:87948308-87948327 MsG0380016790.01.T01:intron 15.0%
!!! AACATAAATTTTTAAGTTTG+GGG + Chr3:87947867-87947886 None:intergenic 15.0%
!!! ATCAAAACAAAAAATTTTAC+CGG - Chr3:87948725-87948744 MsG0380016790.01.T01:intron 15.0%
!!! CAAAACAATTTTTTTTTTAC+GGG + Chr3:87948618-87948637 None:intergenic 15.0%
!! AAAAAAAATAGCTTCTAACA+AGG + Chr3:87947504-87947523 None:intergenic 20.0%
!! AAAAAAATAGCTTCTAACAA+GGG + Chr3:87947503-87947522 None:intergenic 20.0%
!! AAAAATAATAAGATGCACTA+AGG - Chr3:87948890-87948909 MsG0380016790.01.T01:intron 20.0%
!! AACAAAAATGCAGAAAAATA+TGG + Chr3:87949346-87949365 None:intergenic 20.0%
!! AACCCAAAATTCAATATAAA+AGG + Chr3:87948526-87948545 None:intergenic 20.0%
!! ACTCCATAATAAATTGATTA+AGG + Chr3:87947660-87947679 None:intergenic 20.0%
!! CAATTTATTATGGAGTAAAT+AGG - Chr3:87947664-87947683 MsG0380016790.01.T01:intron 20.0%
!! CACAAAATAAATGAGTAAAT+AGG + Chr3:87948483-87948502 None:intergenic 20.0%
!! CATCCTTAATCAATTTATTA+TGG - Chr3:87947654-87947673 MsG0380016790.01.T01:intron 20.0%
!! CGAACAAATAATATTATCAA+GGG + Chr3:87948852-87948871 None:intergenic 20.0%
!! GAAAAAATAGCATTAGAAAA+TGG + Chr3:87949147-87949166 None:intergenic 20.0%
!!! AAACAATTTTTTTTTTACGG+GGG + Chr3:87948616-87948635 None:intergenic 20.0%
!!! AAATAAAATCGGTTTTTGTT+TGG + Chr3:87948658-87948677 None:intergenic 20.0%
!!! AAGAAATTTTCGTTTTTGTT+TGG - Chr3:87948687-87948706 MsG0380016790.01.T01:intron 20.0%
!!! AATATAAATTTTCAAGTTCG+GGG - Chr3:87948309-87948328 MsG0380016790.01.T01:intron 20.0%
!!! ACATAAATTTTTAAGTTTGG+GGG + Chr3:87947866-87947885 None:intergenic 20.0%
!!! AGCCTTTTATATTGAATTTT+GGG - Chr3:87948521-87948540 MsG0380016790.01.T01:intron 20.0%
!!! ATAGCAGATTTTCTTATTAT+AGG + Chr3:87947544-87947563 None:intergenic 20.0%
!!! ATATTGAATTTTGGGTTAAT+AGG - Chr3:87948529-87948548 MsG0380016790.01.T01:intron 20.0%
!!! ATTTAAAAAAAGTACCTTGT+TGG + Chr3:87947473-87947492 None:intergenic 20.0%
!!! CCTTGATAATATTATTTGTT+CGG - Chr3:87948850-87948869 MsG0380016790.01.T01:intron 20.0%
!!! GACTTAATTTTTATTTCCTT+TGG - Chr3:87947100-87947119 MsG0380016790.01.T01:three_prime_UTR 20.0%
!!! TAATTCTGCATTATTTTTAG+AGG + Chr3:87947974-87947993 None:intergenic 20.0%
!!! TAGCCTTTTATATTGAATTT+TGG - Chr3:87948520-87948539 MsG0380016790.01.T01:intron 20.0%
!!! TCAAAACAAAAAATTTTACC+GGG - Chr3:87948726-87948745 MsG0380016790.01.T01:intron 20.0%
!!! TTACTCATTTATTTTGTGTA+TGG - Chr3:87948485-87948504 MsG0380016790.01.T01:intron 20.0%
!!! TTATTTTGACTGTATGTATA+TGG - Chr3:87948926-87948945 MsG0380016790.01.T01:intron 20.0%
!!! TTTGTTTTTGTTATGTCATT+TGG + Chr3:87948185-87948204 None:intergenic 20.0%
! AAATTGATTAAGGATGTGAT+TGG + Chr3:87947650-87947669 None:intergenic 25.0%
! AAGAAAATTCAAGGGTTAAT+AGG + Chr3:87948818-87948837 None:intergenic 25.0%
! AATGGTAAATAGGAAAACTT+TGG + Chr3:87949129-87949148 None:intergenic 25.0%
! AATTAATTGTTCATGAGGAA+TGG - Chr3:87948084-87948103 MsG0380016790.01.T01:intron 25.0%
! ACGGTTATCTTTACTATTTA+AGG - Chr3:87947931-87947950 MsG0380016790.01.T01:intron 25.0%
! AGCATTAGAAAATGGTAAAT+AGG + Chr3:87949139-87949158 None:intergenic 25.0%
! AGTGAAACAAAAGATGTTTA+TGG + Chr3:87949095-87949114 None:intergenic 25.0%
! ATGACTCTTTCATTCTTAAA+TGG + Chr3:87948222-87948241 None:intergenic 25.0%
! ATTAACGTTATGCAATTTCA+GGG - Chr3:87948389-87948408 MsG0380016790.01.T01:intron 25.0%
! ATTAATTGTTCATGAGGAAT+GGG - Chr3:87948085-87948104 MsG0380016790.01.T01:intron 25.0%
! CCGAACAAATAATATTATCA+AGG + Chr3:87948853-87948872 None:intergenic 25.0%
! GTTAGAATTAATTGTTCATG+AGG - Chr3:87948079-87948098 MsG0380016790.01.T01:intron 25.0%
! TACTTTCTGCATAAATGAAA+AGG + Chr3:87949169-87949188 None:intergenic 25.0%
! TGACTAACAGAAAAATTTGA+CGG + Chr3:87947792-87947811 None:intergenic 25.0%
! TGACTAACTGAAAAATTTGA+CGG - Chr3:87948353-87948372 MsG0380016790.01.T01:intron 25.0%
! TGACTCTTTCATTCTTAAAT+GGG + Chr3:87948221-87948240 None:intergenic 25.0%
!! AAAACAAAAAATTTTACCGG+GGG - Chr3:87948728-87948747 MsG0380016790.01.T01:intron 25.0%
!! ATTGACGAAACTTACAATTT+TGG + Chr3:87948465-87948446 None:intergenic 25.0%
!! CAAAACAAAAAATTTTACCG+GGG - Chr3:87948727-87948746 MsG0380016790.01.T01:intron 25.0%
!! CTTTAATATCTTTTGAGCTA+AGG - Chr3:87948275-87948294 MsG0380016790.01.T01:intron 25.0%
!! TTGACGAAACTTACAATTTT+GGG + Chr3:87947698-87947717 None:intergenic 25.0%
!!! ACGTTTTATTAATTTCAGAG+AGG - Chr3:87948421-87948440 MsG0380016790.01.T01:intron 25.0%
!!! ATATAAATTTTCAAGTTCGG+GGG - Chr3:87948310-87948329 MsG0380016790.01.T01:intron 25.0%
!!! ATTGACGTTTTGTTAATTTC+AGG + Chr3:87947728-87947747 None:intergenic 25.0%
!!! ATTTTTTTTTGATTTACCCC+CGG + Chr3:87948747-87948766 None:intergenic 25.0%
!!! CTTTAATATCTTTTGAGTCA+AGG + Chr3:87947900-87947919 None:intergenic 25.0%
!!! TTCTGCATTTTTGTTGTTAT+TGG - Chr3:87949351-87949370 MsG0380016790.01.T01:five_prime_UTR 25.0%
!!! TTGACGTTTTGTTAATTTCA+GGG + Chr3:87947727-87947746 None:intergenic 25.0%
AAGATGTTTATGGTTAGAGT+CGG + Chr3:87949085-87949104 None:intergenic 30.0%
AATATTTACAGGGGAAAAAC+CGG - Chr3:87948764-87948783 MsG0380016790.01.T01:intron 30.0%
AATATTTACATGGGGAAAAC+CGG + Chr3:87948581-87948600 None:intergenic 30.0%
ACCATTCATTACAGAAGATT+TGG - Chr3:87949188-87949207 MsG0380016790.01.T01:CDS 30.0%
ACGAAACTTACAATTTCATG+GGG - Chr3:87948450-87948469 MsG0380016790.01.T01:intron 30.0%
ATTAACGTTGTGCAATTTCA+CGG + Chr3:87947756-87947775 None:intergenic 30.0%
ATTTCAAAGAGAACAACACT+AGG + Chr3:87949297-87949316 None:intergenic 30.0%
CCTGTAATATAAGTCATTTC+CGG - Chr3:87948559-87948578 MsG0380016790.01.T01:intron 30.0%
CGGAAATGACTTATATTACA+GGG + Chr3:87948561-87948580 None:intergenic 30.0%
GACGAAACTTACAATTTCAT+GGG - Chr3:87948449-87948468 MsG0380016790.01.T01:intron 30.0%
GATAGCAAATCAAGTTATAG+CGG + Chr3:87947617-87947636 None:intergenic 30.0%
GATTAACGTTATGCAATTTC+AGG - Chr3:87948388-87948407 MsG0380016790.01.T01:intron 30.0%
TAACTGAAAAATTTGACGGA+GGG - Chr3:87948357-87948376 MsG0380016790.01.T01:intron 30.0%
TCCAAATCTTCTGTAATGAA+TGG + Chr3:87949192-87949211 None:intergenic 30.0%
TGACGAAACTTACAATTTCA+TGG - Chr3:87948448-87948467 MsG0380016790.01.T01:intron 30.0%
TTAACGTTATGCAATTTCAG+GGG - Chr3:87948390-87948409 MsG0380016790.01.T01:intron 30.0%
TTAAGTCAACTTATGTTGCA+AGG + Chr3:87947087-87947106 None:intergenic 30.0%
TTGTTCGGAGTATATTTGAA+AGG - Chr3:87948865-87948884 MsG0380016790.01.T01:intron 30.0%
! GTTTTTACCTCCTGTAATAT+AGG + Chr3:87948796-87948815 None:intergenic 30.0%
! TGACGAAACTTACAATTTTG+GGG + Chr3:87947697-87947716 None:intergenic 30.0%
!! AGATTGCATTGATTTCCTAT+TGG + Chr3:87947018-87947037 None:intergenic 30.0%
!! GCTATAACTTGATTTGCTAT+CGG - Chr3:87947616-87947635 MsG0380016790.01.T01:intron 30.0%
!! GTTCTAATGTTTTCTGGAAA+TGG - Chr3:87949247-87949266 MsG0380016790.01.T01:CDS 30.0%
!! TGACGTTTTGTTAATTTCAG+GGG + Chr3:87947726-87947745 None:intergenic 30.0%
!!! TATAAATTTTCAAGTTCGGG+GGG - Chr3:87948311-87948330 MsG0380016790.01.T01:intron 30.0%
AAAGAATCAAGAGCAAGTGA+TGG - Chr3:87947334-87947353 MsG0380016790.01.T01:intron 35.0%
AACAGAAAAATTTGACGGAG+AGG + Chr3:87947787-87947806 None:intergenic 35.0%
AACTGAAAAATTTGACGGAG+GGG - Chr3:87948358-87948377 MsG0380016790.01.T01:intron 35.0%
ACAGAAAAATTTGACGGAGA+GGG + Chr3:87947786-87947805 None:intergenic 35.0%
ACTTATGTTGCAAGGAACAA+AGG + Chr3:87947079-87947098 None:intergenic 35.0%
AGAGCATATACAGTGCAATT+TGG - Chr3:87949002-87949021 MsG0380016790.01.T01:intron 35.0%
AGGAATTGAATGACAAGAAG+AGG - Chr3:87948952-87948971 MsG0380016790.01.T01:intron 35.0%
ATCACTTGCTCTTGATTCTT+TGG + Chr3:87947335-87947354 None:intergenic 35.0%
CCGGAAATGACTTATATTAC+AGG + Chr3:87948562-87948581 None:intergenic 35.0%
CCTGTAATATAGGTCATTTC+CGG + Chr3:87948786-87948805 None:intergenic 35.0%
CGAAACTTACAATTTCATGG+GGG - Chr3:87948451-87948470 MsG0380016790.01.T01:intron 35.0%
CTAACTGAAAAATTTGACGG+AGG - Chr3:87948356-87948375 MsG0380016790.01.T01:intron 35.0%
CTAGTAATCCACAATACACA+TGG - Chr3:87947156-87947175 MsG0380016790.01.T01:three_prime_UTR 35.0%
CTTATGTTGCAAGGAACAAA+GGG + Chr3:87947078-87947097 None:intergenic 35.0%
GAAATGACCTATATTACAGG+AGG - Chr3:87948786-87948805 MsG0380016790.01.T01:intron 35.0%
GAGAAATGCTCTTGCTTTAT+TGG - Chr3:87947360-87947379 MsG0380016790.01.T01:intron 35.0%
GTGTAATCAAAGATTGTGGT+TGG + Chr3:87947056-87947075 None:intergenic 35.0%
TAACGTTATGCAATTTCAGG+GGG - Chr3:87948391-87948410 MsG0380016790.01.T01:intron 35.0%
TATCAAGCTACCATTGATCA+AGG - Chr3:87947285-87947304 MsG0380016790.01.T01:CDS 35.0%
TGAATACCTTGAAAAGAGCA+AGG - Chr3:87947447-87947466 MsG0380016790.01.T01:CDS 35.0%
TGACTGTATGTATATGGTGT+AGG - Chr3:87948932-87948951 MsG0380016790.01.T01:intron 35.0%
! AAGGGTGTAATCAAAGATTG+TGG + Chr3:87947060-87947079 None:intergenic 35.0%
! GACGAAACTTACAATTTTGG+GGG + Chr3:87947696-87947715 None:intergenic 35.0%
! GATTTGGAACTTGAATGTGA+AGG - Chr3:87949204-87949223 MsG0380016790.01.T01:CDS 35.0%
! TGGCTTACTTTGTTGTGAAT+TGG - Chr3:87948114-87948133 MsG0380016790.01.T01:intron 35.0%
!! CGTTTTTGTTTGGCCTATTA+GGG - Chr3:87948697-87948716 MsG0380016790.01.T01:intron 35.0%
!! GACGTTTTGTTAATTTCAGG+GGG + Chr3:87947725-87947744 None:intergenic 35.0%
!! GGTTTTTGTTTGGCCTATTA+GGG + Chr3:87948648-87948667 None:intergenic 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG - Chr3:87948698-87948717 MsG0380016790.01.T01:intron 35.0%
!! GTTTTTGTTTGGCCTATTAG+GGG + Chr3:87948717-87948698 None:intergenic 35.0%
!! TCGTTTTTGTTTGGCCTATT+AGG - Chr3:87948696-87948715 MsG0380016790.01.T01:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG - Chr3:87948699-87948718 MsG0380016790.01.T01:intron 35.0%
!! TTTTTGTTTGGCCTATTAGG+GGG + Chr3:87948718-87948699 None:intergenic 35.0%
!!! AGTGTGGTTCTAATGTTTTC+TGG - Chr3:87949241-87949260 MsG0380016790.01.T01:CDS 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG - Chr3:87948632-87948651 MsG0380016790.01.T01:intron 35.0%
!!! GTTTTGATTTACCCCCTAAT+AGG + Chr3:87948651-87948632 None:intergenic 35.0%
AACGTTATGCAATTTCAGGG+GGG - Chr3:87948392-87948411 MsG0380016790.01.T01:intron 40.0%
AAGTTCCCTGAGAATTTCAC+TGG - Chr3:87949032-87949051 MsG0380016790.01.T01:CDS 40.0%
ACATAAGTGCAAAACGTCAG+GGG + Chr3:87947835-87947854 None:intergenic 40.0%
ACTGAAAAATTTGACGGAGG+GGG - Chr3:87948359-87948378 MsG0380016790.01.T01:intron 40.0%
CACATAAGTGCAAAACGTCA+GGG + Chr3:87947836-87947855 None:intergenic 40.0%
CCAAGATCTTGCTAAACAGA+AGG - Chr3:87949058-87949077 MsG0380016790.01.T01:CDS 40.0%
CCGGAAATGACCTATATTAC+AGG - Chr3:87948783-87948802 MsG0380016790.01.T01:intron 40.0%
CCTTCTGTTTAGCAAGATCT+TGG + Chr3:87949061-87949080 None:intergenic 40.0%
GGAAAGGACAAATACAAGTG+TGG - Chr3:87949225-87949244 MsG0380016790.01.T01:CDS 40.0%
GGAACTTGAATGTGAAGGAA+AGG - Chr3:87949209-87949228 MsG0380016790.01.T01:CDS 40.0%
TGAAACAGCAGTGGTGAAAA+GGG + Chr3:87947392-87947411 None:intergenic 40.0%
TGATGTGTATCAGAGTCCAA+AGG + Chr3:87947119-87947138 None:intergenic 40.0%
TTCATCAATAACGCCAGCAT+TGG + Chr3:87947431-87947450 None:intergenic 40.0%
! AATCAAGAGCAAGTGATGGA+AGG - Chr3:87947338-87947357 MsG0380016790.01.T01:intron 40.0%
! ACTTGTTGAGCCTTGATCAA+TGG + Chr3:87947298-87947317 None:intergenic 40.0%
!! CGGTTTTTGTTTGGCCTATT+AGG + Chr3:87948649-87948668 None:intergenic 40.0%
!! CTTCTAGAGTCTTAACTGTG+TGG - Chr3:87949435-87949454 MsG0380016790.01.T01:five_prime_UTR 40.0%
!! GACTCTAGAAGAGTACCAAA+AGG + Chr3:87949426-87949445 None:intergenic 40.0%
!! TAGAAGAGTACCAAAAGGAG+AGG + Chr3:87949421-87949440 None:intergenic 40.0%
AACGTTGTGCAATTTCACGG+AGG + Chr3:87947753-87947772 None:intergenic 45.0%
ATTGAGCTCAGCACCAGATA+TGG + Chr3:87947218-87947237 None:intergenic 45.0%
CATAAGTGCAAAACGTCAGG+GGG + Chr3:87947834-87947853 None:intergenic 45.0%
CATTGCAGCCATGTGTATTG+TGG + Chr3:87947167-87947186 None:intergenic 45.0%
CTGAAACAGCAGTGGTGAAA+AGG + Chr3:87947393-87947412 None:intergenic 45.0%
GCACATAAGTGCAAAACGTC+AGG + Chr3:87947837-87947856 None:intergenic 45.0%
GCTTGTAGCTATGCCATATC+TGG - Chr3:87947202-87947221 MsG0380016790.01.T01:three_prime_UTR 45.0%
GGCAACCAGTGAAATTCTCA+GGG + Chr3:87949040-87949059 None:intergenic 45.0%
TCCAATTCTTCTGCCAATGC+TGG - Chr3:87947415-87947434 MsG0380016790.01.T01:intron 45.0%
TGAAAAGAGCAAGGCCAACA+AGG - Chr3:87947456-87947475 MsG0380016790.01.T01:CDS 45.0%
TGGCAACCAGTGAAATTCTC+AGG + Chr3:87949041-87949060 None:intergenic 45.0%
! ATTAGGCATGCCTCTCCTTT+TGG - Chr3:87949408-87949427 MsG0380016790.01.T01:five_prime_UTR 45.0%
! GCTCTTGATTCTTTGGCTTC+AGG + Chr3:87947328-87947347 None:intergenic 45.0%
! TCTTGCAAAGTTTGCTCCAC+TGG + Chr3:87948985-87949004 None:intergenic 45.0%
!! AGCATTGGCAGAAGAATTGG+AGG + Chr3:87947416-87947435 None:intergenic 45.0%
!!! TGTTGGCCTTGCTCTTTTCA+AGG + Chr3:87947456-87947475 None:intergenic 45.0%
!! AATAAAAAAAAATATTTACA+TGG + Chr3:87948591-87948610 None:intergenic 5.0%
!! ATAAAAAAAAATATTTACAT+GGG + Chr3:87948590-87948609 None:intergenic 5.0%
!! TTGAAAAAAAAAAATAAAAT+CGG + Chr3:87948669-87948688 None:intergenic 5.0%
AGCTTGATACCTGAAACCCC+TGG + Chr3:87947274-87947293 None:intergenic 50.0%
ATTGGAGGCTGAAACAGCAG+TGG + Chr3:87947401-87947420 None:intergenic 50.0%
CAAAGATTGTGGTTGGCGTG+TGG + Chr3:87947049-87947068 None:intergenic 50.0%
TCATGAGGAATGGGTGTCTC+TGG - Chr3:87948094-87948113 MsG0380016790.01.T01:intron 50.0%
TTGTGGTTGGCGTGTGGATA+AGG + Chr3:87947043-87947062 None:intergenic 50.0%
! TGCAAAGTTTGCTCCACTGG+TGG + Chr3:87948982-87949001 None:intergenic 50.0%
!! GCCAGCATTGGCAGAAGAAT+TGG + Chr3:87947419-87947438 None:intergenic 50.0%
! AAGAAGAGGCTAGCCACCAG+TGG - Chr3:87948966-87948985 MsG0380016790.01.T01:intron 55.0%
GCTGCATCACCAGGGGTTTC+AGG - Chr3:87947262-87947281 MsG0380016790.01.T01:CDS 60.0%
TGCCCTCTGCTGCATCACCA+GGG - Chr3:87947254-87947273 MsG0380016790.01.T01:CDS 60.0%
! AACCCCTGGTGATGCAGCAG+AGG + Chr3:87947260-87947279 None:intergenic 60.0%
! ACCCCTGGTGATGCAGCAGA+GGG + Chr3:87947259-87947278 None:intergenic 60.0%
GCCCTCTGCTGCATCACCAG+GGG - Chr3:87947255-87947274 MsG0380016790.01.T01:CDS 65.0%
GTGCCCTCTGCTGCATCACC+AGG - Chr3:87947253-87947272 MsG0380016790.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 87947001 87949500 87947001 ID=MsG0380016790.01;Name=MsG0380016790.01
Chr3 mRNA 87947001 87949500 87947001 ID=MsG0380016790.01.T01;Parent=MsG0380016790.01;Name=MsG0380016790.01.T01;_AED=0.42;_eAED=0.42;_QI=174|1|1|1|1|1|3|228|172
Chr3 exon 87947001 87947318 87947001 ID=MsG0380016790.01.T01:exon:22360;Parent=MsG0380016790.01.T01
Chr3 exon 87947422 87947547 87947422 ID=MsG0380016790.01.T01:exon:22359;Parent=MsG0380016790.01.T01
Chr3 exon 87949024 87949500 87949024 ID=MsG0380016790.01.T01:exon:22358;Parent=MsG0380016790.01.T01
Chr3 five_prime_UTR 87949327 87949500 87949327 ID=MsG0380016790.01.T01:five_prime_utr;Parent=MsG0380016790.01.T01
Chr3 CDS 87949024 87949326 87949024 ID=MsG0380016790.01.T01:cds;Parent=MsG0380016790.01.T01
Chr3 CDS 87947422 87947547 87947422 ID=MsG0380016790.01.T01:cds;Parent=MsG0380016790.01.T01
Chr3 CDS 87947229 87947318 87947229 ID=MsG0380016790.01.T01:cds;Parent=MsG0380016790.01.T01
Chr3 three_prime_UTR 87947001 87947228 87947001 ID=MsG0380016790.01.T01:three_prime_utr;Parent=MsG0380016790.01.T01
Gene Sequence

>MsG0380016790.01.T01

ATGGCTGCAATGAACTCAAGTGTATTAGCTTGTAGCTATGCCATATCTGGTGCTGAGCTCAATGCAAAGCTCATTTCAGTGCCCTCTGCTGCATCACCAGGGGTTTCAGGTATCAAGCTACCATTGATCAAGGCTCAACAAGTGAGAATTCCTGAAGCCAAAGAATCAAGAGCAAGTGATGGAAGGAGAAATGCTCTTGCTTTATTGGCTGCTACCCTTTTCACCACTGCTGTTTCAGCCTCCAATTCTTCTGCCAATGCTGGCGTTATTGATGAATACCTTGAAAAGAGCAAGGCCAACAAGGAATTGAATGACAAGAAGAGGCTAGCCACCAGTGGAGCAAACTTTGCAAGAGCATATACAGTGCAATTTGGTACTTGCAAGTTCCCTGAGAATTTCACTGGTTGCCAAGATCTTGCTAAACAGAAGAAAGTACCATTCATTACAGAAGATTTGGAACTTGAATGTGAAGGAAAGGACAAATACAAGTGTGGTTCTAATGTTTTCTGGAAATGGTGA

Protein sequence

>MsG0380016790.01.T01

MAAMNSSVLACSYAISGAELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKESRASDGRRNALALLAATLFTTAVSASNSSANAGVIDEYLEKSKANKELNDKKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW*