AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0180003980.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003980.01.T01 MTR_1g072170 93.050 259 4 1 1 245 1 259 3.59e-171 472
MsG0180003980.01.T01 MTR_8g040070 34.463 177 100 2 81 243 84 258 1.34e-22 93.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0180003980.01.T01 AT3G63190 61.029 272 79 5 1 245 1 272 3.36e-99 291
MsG0180003980.01.T01 AT3G01800 36.310 168 95 2 88 243 95 262 2.62e-24 98.2

Find 49 sgRNAs with CRISPR-Local

Find 260 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATCACTTCTCCATCGTTAT+TGG 0.194025 1:+71333834 None:intergenic
TCCTGATGCCAGTTCACTTT+TGG 0.242942 1:-71334297 MsG0180003980.01.T01:CDS
AGATTTGTCTAGCGATTTGC+AGG 0.346351 1:-71331676 MsG0180003980.01.T01:intron
ATCACTTCTCCATCGTTATT+GGG 0.347336 1:+71333835 None:intergenic
ACATACCTTGATTTGTCATA+TGG 0.356032 1:+71334269 None:intergenic
ACATTATAGGTGGAATACTA+TGG 0.360282 1:-71334359 MsG0180003980.01.T01:intron
AATTTCAGTTCTATAAGAAC+TGG 0.378877 1:-71335348 MsG0180003980.01.T01:CDS
GTGTGCAGAAAGAAGGGCTT+TGG 0.399732 1:+71335754 None:intergenic
GCAATGGTCTTCAAGCTAAC+TGG 0.399998 1:+71334332 None:intergenic
AGAAGGGCTTTGGGAACAAT+TGG 0.409380 1:+71335764 None:intergenic
AAAGAACTCTTGACAATGTT+AGG 0.410140 1:-71335374 MsG0180003980.01.T01:CDS
ATGGAACGGAGTGGTGTTGT+TGG 0.441029 1:+71335800 None:intergenic
GCAGACACTCCCTTTCTAAA+GGG 0.448929 1:-71335673 MsG0180003980.01.T01:CDS
AGCAGACACTCCCTTTCTAA+AGG 0.450579 1:-71335674 MsG0180003980.01.T01:CDS
AGAGCGTTTGATGGTGAAAG+AGG 0.456249 1:+71335730 None:intergenic
GGTTGTTGACATTGCATACA+AGG 0.466273 1:-71335652 MsG0180003980.01.T01:intron
CTATATGTCTTCAGAAAAGT+AGG 0.473495 1:-71335401 MsG0180003980.01.T01:intron
AGAGAGCTTTAGAGTGACAT+AGG 0.473657 1:+71335703 None:intergenic
ACCAAAAGTGAACTGGCATC+AGG 0.479918 1:+71334296 None:intergenic
AAGAGGAGTGTGCAGAAAGA+AGG 0.485037 1:+71335747 None:intergenic
TGGTGTTGTTGGAGAGAAAG+AGG 0.488481 1:+71335811 None:intergenic
GCTATAGTTAACTCTGATGT+TGG 0.492221 1:-71333865 MsG0180003980.01.T01:CDS
TGTGCAGAAAGAAGGGCTTT+GGG 0.498070 1:+71335755 None:intergenic
TGGCGAGACCAAAAGTGAAC+TGG 0.501357 1:+71334289 None:intergenic
ATGTCAACAACCCTTTAGAA+AGG 0.507262 1:+71335663 None:intergenic
TTGTGTTCTTGTCTTTGTTG+TGG 0.510736 1:+71335856 None:intergenic
ATAGGTTGAAGAGCGTTTGA+TGG 0.516882 1:+71335721 None:intergenic
TCTCGCCATATGACAAATCA+AGG 0.529141 1:-71334274 MsG0180003980.01.T01:intron
TATGTCACTCTAAAGCTCTC+TGG 0.534466 1:-71335701 MsG0180003980.01.T01:CDS
AGAGGAGTGTGCAGAAAGAA+GGG 0.537281 1:+71335748 None:intergenic
GACTGATGATTATATAAAGA+AGG 0.541481 1:-71331329 MsG0180003980.01.T01:CDS
CCTCTACAAACAGAAAGAAA+AGG 0.543613 1:-71331299 MsG0180003980.01.T01:CDS
TGTCAACAACCCTTTAGAAA+GGG 0.566235 1:+71335664 None:intergenic
AGGAGTGCTTATTTGAGCAA+TGG 0.572944 1:+71334316 None:intergenic
GGGCTTTGGGAACAATTGGA+AGG 0.573894 1:+71335768 None:intergenic
GTCTATGCTTGACAAAATTG+AGG 0.583206 1:-71335313 MsG0180003980.01.T01:intron
CTCAGTTGACATCTGATAGA+CGG 0.584774 1:-71333798 MsG0180003980.01.T01:CDS
ATGTCTTCAGAAAAGTAGGA+TGG 0.586348 1:-71335397 MsG0180003980.01.T01:intron
GTCTATCAGATGTCAACTGA+GGG 0.592082 1:+71333800 None:intergenic
ACCCAGAAAGGGATTTGTGA+GGG 0.603850 1:-71335545 MsG0180003980.01.T01:intron
TAACAGATAAACATATCAAG+TGG 0.612633 1:+71331264 None:intergenic
ATAACGATGGAGAAGTGATA+CGG 0.614514 1:-71333831 MsG0180003980.01.T01:CDS
ATTTCAGTTCTATAAGAACT+GGG 0.614614 1:-71335347 MsG0180003980.01.T01:CDS
ACAAGGCGTAGAGCATCTCA+TGG 0.646072 1:-71335837 MsG0180003980.01.T01:exon
CGTCTATCAGATGTCAACTG+AGG 0.647000 1:+71333799 None:intergenic
GTTGACATCTGATAGACGGA+AGG 0.650277 1:-71333794 MsG0180003980.01.T01:intron
TACCCAGAAAGGGATTTGTG+AGG 0.662137 1:-71335546 MsG0180003980.01.T01:intron
ACAACAAAGACAAGAACACA+AGG 0.687493 1:-71335854 MsG0180003980.01.T01:five_prime_UTR
GGTATGACTCCCAATAACGA+TGG 0.693482 1:-71333844 MsG0180003980.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTATTTTTTTTAGAGAAT+CGG - Chr1:71332751-71332770 MsG0180003980.01.T01:intron 10.0%
!! AAAAATAAAACTAAAAAGTG+TGG + Chr1:71332741-71332760 None:intergenic 15.0%
!! AAAAGAAAAAGTTATCAATT+TGG + Chr1:71332627-71332646 None:intergenic 15.0%
!! AACTTAAAAGAATATAGAAA+AGG - Chr1:71334623-71334642 MsG0180003980.01.T01:intron 15.0%
!!! AATTAATAGAGTGATAATTT+TGG + Chr1:71331532-71331551 None:intergenic 15.0%
!!! ATTTTAATTTGTTGTTCTAA+AGG - Chr1:71331938-71331957 MsG0180003980.01.T01:intron 15.0%
!!! TTTTATGTATATATGAATGT+GGG - Chr1:71331716-71331735 MsG0180003980.01.T01:intron 15.0%
!!! TTTTTATGTATATATGAATG+TGG - Chr1:71331715-71331734 MsG0180003980.01.T01:intron 15.0%
!! ACACACTTGAATAATTTAAA+TGG - Chr1:71333561-71333580 MsG0180003980.01.T01:intron 20.0%
!! ATTCACCAATAAAAACAAAA+GGG + Chr1:71335567-71335586 None:intergenic 20.0%
!! ATTTATACAAGAAAGACAAT+AGG - Chr1:71334546-71334565 MsG0180003980.01.T01:intron 20.0%
!! ATTTCTATACATTAAGTCTT+TGG - Chr1:71333889-71333908 MsG0180003980.01.T01:intron 20.0%
!! CTATTATTGTTTACTAGTAA+CGG + Chr1:71332399-71332418 None:intergenic 20.0%
!! TTAACAACGATATATACAAA+GGG - Chr1:71333606-71333625 MsG0180003980.01.T01:intron 20.0%
!! TTAGTTATACATGAATTATG+TGG - Chr1:71334786-71334805 MsG0180003980.01.T01:intron 20.0%
!! TTTAACAACGATATATACAA+AGG - Chr1:71333605-71333624 MsG0180003980.01.T01:intron 20.0%
!! TTTATGTATATATGAATGTG+GGG - Chr1:71331717-71331736 MsG0180003980.01.T01:intron 20.0%
!!! AACAAATTCTGAGAAAATTA+CGG - Chr1:71332493-71332512 MsG0180003980.01.T01:intron 20.0%
!!! AATATTGATTTTTAGCTTGA+AGG - Chr1:71333257-71333276 MsG0180003980.01.T01:intron 20.0%
!!! GATAACTTTTTCTTTTATTG+TGG - Chr1:71332631-71332650 MsG0180003980.01.T01:intron 20.0%
!!! GATTGGTTCTTATTATAATT+TGG - Chr1:71331575-71331594 MsG0180003980.01.T01:intron 20.0%
!!! TTATACTAAAGAGTATATCA+AGG + Chr1:71332163-71332182 None:intergenic 20.0%
!!! TTGTTGTTGTATTTCATTAT+TGG - Chr1:71335738-71335757 MsG0180003980.01.T01:CDS 20.0%
!!! TTTAAGTGTTTGTTAAATAG+TGG - Chr1:71332090-71332109 MsG0180003980.01.T01:intron 20.0%
!!! TTTATTCTAGAAGCATATTA+TGG + Chr1:71335200-71335219 None:intergenic 20.0%
!!! TTTTGTTTTTATTGGTGAAT+GGG - Chr1:71335567-71335586 MsG0180003980.01.T01:intron 20.0%
! AAAAACAATCAATGAGAAAG+GGG - Chr1:71334675-71334694 MsG0180003980.01.T01:intron 25.0%
! AACTAACCATTTAAATGACA+TGG + Chr1:71334772-71334791 None:intergenic 25.0%
! AAGTTGTTTGTAACTTTCTT+TGG - Chr1:71335236-71335255 MsG0180003980.01.T01:intron 25.0%
! AATGACATGGTTTCATAAAA+AGG + Chr1:71334759-71334778 None:intergenic 25.0%
! AATTTCAGTTCTATAAGAAC+TGG - Chr1:71331808-71331827 MsG0180003980.01.T01:intron 25.0%
! ACAAAAACAATCAATGAGAA+AGG - Chr1:71334673-71334692 MsG0180003980.01.T01:intron 25.0%
! ACAAGGAATAAATTACTGAA+GGG + Chr1:71335386-71335405 None:intergenic 25.0%
! ACAATAATAGGACAAAACTT+AGG - Chr1:71332409-71332428 MsG0180003980.01.T01:intron 25.0%
! AGCTTATGAAAAACTTGAAA+AGG - Chr1:71335324-71335343 MsG0180003980.01.T01:CDS 25.0%
! ATTTCAGTTCTATAAGAACT+GGG - Chr1:71331809-71331828 MsG0180003980.01.T01:intron 25.0%
! CAAAAACAATCAATGAGAAA+GGG - Chr1:71334674-71334693 MsG0180003980.01.T01:intron 25.0%
! CATTCACCAATAAAAACAAA+AGG + Chr1:71335568-71335587 None:intergenic 25.0%
! CGTTACTAGTAAACAATAAT+AGG - Chr1:71332397-71332416 MsG0180003980.01.T01:intron 25.0%
! CTGATTCAAAGTAATATTTC+TGG - Chr1:71333480-71333499 MsG0180003980.01.T01:intron 25.0%
! GACTGATGATTATATAAAGA+AGG - Chr1:71335827-71335846 MsG0180003980.01.T01:exon 25.0%
! TACCAAAGAAAAACCTTATT+GGG - Chr1:71334044-71334063 MsG0180003980.01.T01:intron 25.0%
! TGTATTTCATTATTGGTCAA+TGG - Chr1:71335745-71335764 MsG0180003980.01.T01:CDS 25.0%
! TTAAACCAGAAAGAATGAAA+TGG - Chr1:71332926-71332945 MsG0180003980.01.T01:intron 25.0%
! TTACCAAAGAAAAACCTTAT+TGG - Chr1:71334043-71334062 MsG0180003980.01.T01:intron 25.0%
! TTACTTCATTTCACTTGATT+TGG - Chr1:71332062-71332081 MsG0180003980.01.T01:intron 25.0%
!! AAATTCCAACAGAATTGTTT+TGG - Chr1:71334723-71334742 MsG0180003980.01.T01:intron 25.0%
!! ATGAAACCATGTCATTTAAA+TGG - Chr1:71334763-71334782 MsG0180003980.01.T01:intron 25.0%
!! TATGTTTTGTCATAATGAAC+TGG - Chr1:71334966-71334985 MsG0180003980.01.T01:intron 25.0%
!! TTGTTGAAGAATGTCTTATT+TGG + Chr1:71333149-71333168 None:intergenic 25.0%
!!! ATGTTTCCAGTTTTTAAGAT+GGG - Chr1:71334396-71334415 MsG0180003980.01.T01:intron 25.0%
!!! ATTTGGTAATGAAAGTAAAG+TGG - Chr1:71334284-71334303 MsG0180003980.01.T01:CDS 25.0%
!!! CTTTTGTTTTTATTGGTGAA+TGG - Chr1:71335566-71335585 MsG0180003980.01.T01:intron 25.0%
!!! GTGATTAATGAAAGGTATTA+CGG + Chr1:71335412-71335431 None:intergenic 25.0%
!!! TGCTTCTAGAATAAATGTTT+TGG - Chr1:71335205-71335224 MsG0180003980.01.T01:intron 25.0%
!!! TGTTGAAGAATGTCTTATTT+GGG + Chr1:71333148-71333167 None:intergenic 25.0%
!!! TTCAAAGTAATATTTCTGGT+TGG - Chr1:71333484-71333503 MsG0180003980.01.T01:intron 25.0%
!!! TTTTGAAAAATACCCAGAAA+GGG - Chr1:71331600-71331619 MsG0180003980.01.T01:intron 25.0%
!!! TTTTTGAAAAATACCCAGAA+AGG - Chr1:71331599-71331618 MsG0180003980.01.T01:intron 25.0%
AAAACAATCAATGAGAAAGG+GGG - Chr1:71334676-71334695 MsG0180003980.01.T01:intron 30.0%
AAAGAACTCTTGACAATGTT+AGG - Chr1:71331782-71331801 MsG0180003980.01.T01:intron 30.0%
AATCGCATATACTTACACAA+TGG - Chr1:71332657-71332676 MsG0180003980.01.T01:intron 30.0%
ACAACAACAAATTATCCTCA+CGG + Chr1:71335728-71335747 None:intergenic 30.0%
ACATTATAGGTGGAATACTA+TGG - Chr1:71332797-71332816 MsG0180003980.01.T01:intron 30.0%
ACCAAATCTCATTGATACAA+GGG + Chr1:71334271-71334290 None:intergenic 30.0%
ACTAATATACACAACTCAAC+GGG + Chr1:71333090-71333109 None:intergenic 30.0%
AGACAAATAGTAGAAGTTTC+AGG - Chr1:71334009-71334028 MsG0180003980.01.T01:intron 30.0%
AGTATTTGTATCATTCCGTA+CGG - Chr1:71333121-71333140 MsG0180003980.01.T01:intron 30.0%
ATCTTCAATAAACCCTTACA+AGG + Chr1:71333786-71333805 None:intergenic 30.0%
CAATAAAAACAAAAGGGAGA+TGG + Chr1:71335561-71335580 None:intergenic 30.0%
CTATATGTCTTCAGAAAAGT+AGG - Chr1:71331755-71331774 MsG0180003980.01.T01:intron 30.0%
CTGTTTCATAACATTATAGG+TGG - Chr1:71332787-71332806 MsG0180003980.01.T01:intron 30.0%
CTTATCCATTTCATTCTTTC+TGG + Chr1:71332934-71332953 None:intergenic 30.0%
CTTGTTTATTGCCAATTTGA+GGG - Chr1:71334991-71335010 MsG0180003980.01.T01:intron 30.0%
GAAAGAAAGGTAAACAATGA+AGG + Chr1:71335357-71335376 None:intergenic 30.0%
GAACAACACAAAAATACCTA+AGG - Chr1:71332557-71332576 MsG0180003980.01.T01:intron 30.0%
GACAAGGAATAAATTACTGA+AGG + Chr1:71335387-71335406 None:intergenic 30.0%
GACTAATATACACAACTCAA+CGG + Chr1:71333091-71333110 None:intergenic 30.0%
GGGACAATATACTGTAAAAT+GGG - Chr1:71335587-71335606 MsG0180003980.01.T01:intron 30.0%
TACAAACAGTTGTCAAATAG+CGG - Chr1:71332266-71332285 MsG0180003980.01.T01:intron 30.0%
TACCAAATCTCATTGATACA+AGG + Chr1:71334272-71334291 None:intergenic 30.0%
TACCTTTCATTAATCACTGT+TGG - Chr1:71335415-71335434 MsG0180003980.01.T01:intron 30.0%
TACGGATTTGAAGAAATCAT+GGG - Chr1:71332511-71332530 MsG0180003980.01.T01:intron 30.0%
TAGCAAAGAAATAAGTTCCA+AGG + Chr1:71335026-71335045 None:intergenic 30.0%
TGAATGTCTAAACGAATATG+TGG - Chr1:71334816-71334835 MsG0180003980.01.T01:intron 30.0%
TGATACCAAAACAATTCTGT+TGG + Chr1:71334731-71334750 None:intergenic 30.0%
TGGGACAATATACTGTAAAA+TGG - Chr1:71335586-71335605 MsG0180003980.01.T01:intron 30.0%
TGTGATTAAATGTGTGCATA+TGG - Chr1:71333192-71333211 MsG0180003980.01.T01:intron 30.0%
TTACGGATTTGAAGAAATCA+TGG - Chr1:71332510-71332529 MsG0180003980.01.T01:intron 30.0%
TTAGAGAAAAATATCCTTCC+AGG + Chr1:71333855-71333874 None:intergenic 30.0%
TTCCAACAGTGATTAATGAA+AGG + Chr1:71335420-71335439 None:intergenic 30.0%
TTCTGAACTACTTCATTGAT+TGG - Chr1:71331558-71331577 MsG0180003980.01.T01:intron 30.0%
TTTATTTGGAAACCTATGCA+TGG - Chr1:71334180-71334199 MsG0180003980.01.T01:intron 30.0%
! CTTTTCTTTCTGTTTGTAGA+GGG + Chr1:71335859-71335878 None:intergenic 30.0%
! GAGCTGTTTCATAACATTAT+AGG - Chr1:71332784-71332803 MsG0180003980.01.T01:intron 30.0%
! TCAATTTTGTCAAGCATAGA+CGG + Chr1:71331844-71331863 None:intergenic 30.0%
! TCTTGTTTATTGCCAATTTG+AGG - Chr1:71334990-71335009 MsG0180003980.01.T01:intron 30.0%
! TGCAGTGTCTAGATTATTTT+TGG - Chr1:71333407-71333426 MsG0180003980.01.T01:intron 30.0%
! TGTCTAAACAAGTTGAAGAA+GGG - Chr1:71334915-71334934 MsG0180003980.01.T01:intron 30.0%
! TGTTTTGCTACTAATCTTGA+GGG + Chr1:71333647-71333666 None:intergenic 30.0%
!! ACATACCTTGATTTGTCATA+TGG + Chr1:71332890-71332909 None:intergenic 30.0%
!! ACATTAAGTCTTTGGTTTGA+AGG - Chr1:71333897-71333916 MsG0180003980.01.T01:intron 30.0%
!! CATGTTTCCAGTTTTTAAGA+TGG - Chr1:71334395-71334414 MsG0180003980.01.T01:intron 30.0%
!! CTTCTATTCTTTTTCATGTG+TGG - Chr1:71332990-71333009 MsG0180003980.01.T01:intron 30.0%
!! TGTTCTAAAGGTAGATCAAT+TGG - Chr1:71331950-71331969 MsG0180003980.01.T01:intron 30.0%
!! TTGTTTTGCTACTAATCTTG+AGG + Chr1:71333648-71333667 None:intergenic 30.0%
!!! AATTGGAAGGTTTTGAAAGA+TGG + Chr1:71331378-71331397 None:intergenic 30.0%
!!! ATTTTTTGTTTCTCCTTTCC+AGG - Chr1:71334877-71334896 MsG0180003980.01.T01:intron 30.0%
!!! CATCTCCCTTTTGTTTTTAT+TGG - Chr1:71335559-71335578 MsG0180003980.01.T01:intron 30.0%
!!! GACAATGTTTTTAAGTGTTC+CGG - Chr1:71334206-71334225 MsG0180003980.01.T01:intron 30.0%
AAACAATCAATGAGAAAGGG+GGG - Chr1:71334677-71334696 MsG0180003980.01.T01:intron 35.0%
AAACTTAGGTGCATTTCCTT+AGG - Chr1:71332423-71332442 MsG0180003980.01.T01:intron 35.0%
AAATCTCATTGATACAAGGG+TGG + Chr1:71334268-71334287 None:intergenic 35.0%
AACATTGTCATTCCATGCAT+AGG + Chr1:71334195-71334214 None:intergenic 35.0%
AATAATTCTGAGTGAGCTCT+TGG - Chr1:71333229-71333248 MsG0180003980.01.T01:intron 35.0%
AATTCTGTTGGAATTTGACC+TGG + Chr1:71334719-71334738 None:intergenic 35.0%
ACAACAAAGACAAGAACACA+AGG - Chr1:71331302-71331321 MsG0180003980.01.T01:CDS 35.0%
ACACTATCTTTGTTAGTTCC+TGG + Chr1:71334898-71334917 None:intergenic 35.0%
ACCCTTGTATCAATGAGATT+TGG - Chr1:71334267-71334286 MsG0180003980.01.T01:intron 35.0%
AGTTTCCATAGAAAGTTCAG+CGG + Chr1:71334607-71334626 None:intergenic 35.0%
ATAACGATGGAGAAGTGATA+CGG - Chr1:71333325-71333344 MsG0180003980.01.T01:intron 35.0%
ATATCAAGGAACAATAGCGA+TGG + Chr1:71332149-71332168 None:intergenic 35.0%
ATCACTTCTCCATCGTTATT+GGG + Chr1:71333324-71333343 None:intergenic 35.0%
ATCTTTGTTAGTTCCTGGAA+AGG + Chr1:71334893-71334912 None:intergenic 35.0%
ATGACAATTGAATGTCCCAT+AGG + Chr1:71332590-71332609 None:intergenic 35.0%
ATGTCTTCAGAAAAGTAGGA+TGG - Chr1:71331759-71331778 MsG0180003980.01.T01:intron 35.0%
ATTCTCTACCAGTGAATACA+GGG + Chr1:71334091-71334110 None:intergenic 35.0%
CAGAAAAGAAGAAAAGTCAC+AGG + Chr1:71333439-71333458 None:intergenic 35.0%
CCAATCAACATTGTCAATTG+TGG + Chr1:71332335-71332354 None:intergenic 35.0%
CCACAATTGACAATGTTGAT+TGG - Chr1:71332332-71332351 MsG0180003980.01.T01:intron 35.0%
CCTCTACAAACAGAAAGAAA+AGG - Chr1:71335857-71335876 MsG0180003980.01.T01:five_prime_UTR 35.0%
CTAATATACACAACTCAACG+GGG + Chr1:71333089-71333108 None:intergenic 35.0%
GAAAATTCACACTGATGACT+AGG + Chr1:71335706-71335725 None:intergenic 35.0%
GCTATAGTTAACTCTGATGT+TGG - Chr1:71333291-71333310 MsG0180003980.01.T01:intron 35.0%
GTAACTTGATACACTCATGT+AGG - Chr1:71335502-71335521 MsG0180003980.01.T01:CDS 35.0%
GTCTATGCTTGACAAAATTG+AGG - Chr1:71331843-71331862 MsG0180003980.01.T01:CDS 35.0%
GTTCTCATTGTAAACTAGAC+CGG + Chr1:71334228-71334247 None:intergenic 35.0%
TAACTTTCTTTGGACTGCTT+TGG - Chr1:71335246-71335265 MsG0180003980.01.T01:intron 35.0%
TATCACTTCTCCATCGTTAT+TGG + Chr1:71333325-71333344 None:intergenic 35.0%
TATTCTCTACCAGTGAATAC+AGG + Chr1:71334092-71334111 None:intergenic 35.0%
TGAAGGGAGTTAAGAAAGAA+AGG + Chr1:71335370-71335389 None:intergenic 35.0%
TGTTTATTGCAACTTGACGT+TGG + Chr1:71335625-71335644 None:intergenic 35.0%
TTATGAAACAGCTCATCTAC+AGG + Chr1:71332778-71332797 None:intergenic 35.0%
TTGTGTTCTTGTCTTTGTTG+TGG + Chr1:71331303-71331322 None:intergenic 35.0%
! AATTTTGTCAAGCATAGACG+GGG + Chr1:71331842-71331861 None:intergenic 35.0%
! ACATTGTCAATTGTGGATTG+CGG + Chr1:71332328-71332347 None:intergenic 35.0%
! AGCCCAATAAGGTTTTTCTT+TGG + Chr1:71334049-71334068 None:intergenic 35.0%
! ATGTCAACAACCCTTTAGAA+AGG + Chr1:71331496-71331515 None:intergenic 35.0%
! CAAGTTTTCAGTCGATTGTT+AGG + Chr1:71334327-71334346 None:intergenic 35.0%
! CAATTTTGTCAAGCATAGAC+GGG + Chr1:71331843-71331862 None:intergenic 35.0%
! CATCCTCGTTATGATTTGTA+CGG - Chr1:71333013-71333032 MsG0180003980.01.T01:intron 35.0%
! CCTTTTCTTTCTGTTTGTAG+AGG + Chr1:71335860-71335879 None:intergenic 35.0%
! GTGTCTAAACAAGTTGAAGA+AGG - Chr1:71334914-71334933 MsG0180003980.01.T01:intron 35.0%
! TAAACAAGTTGAAGAAGGGA+AGG - Chr1:71334919-71334938 MsG0180003980.01.T01:intron 35.0%
! TGTCAACAACCCTTTAGAAA+GGG + Chr1:71331495-71331514 None:intergenic 35.0%
!!! ACTGCATTGGCAGTTTTATT+TGG - Chr1:71334166-71334185 MsG0180003980.01.T01:intron 35.0%
!!! GAAGGTTTTGAAAGATGGAA+CGG + Chr1:71331373-71331392 None:intergenic 35.0%
!!! TCCAGTTTTTAAGATGGGTA+GGG - Chr1:71334401-71334420 MsG0180003980.01.T01:intron 35.0%
!!! TTCCAGTTTTTAAGATGGGT+AGG - Chr1:71334400-71334419 MsG0180003980.01.T01:intron 35.0%
ACAACGCGAAAAAACACCTA+AGG + Chr1:71332442-71332461 None:intergenic 40.0%
ACCTAAGGAAATGCACCTAT+GGG - Chr1:71332572-71332591 MsG0180003980.01.T01:intron 40.0%
AGATGATATCGCCTTAGACT+TGG - Chr1:71334111-71334130 MsG0180003980.01.T01:intron 40.0%
AGATTTGTCTAGCGATTTGC+AGG - Chr1:71335480-71335499 MsG0180003980.01.T01:intron 40.0%
AGCTATCTGAGTTCCTTGTA+AGG - Chr1:71333770-71333789 MsG0180003980.01.T01:intron 40.0%
CCAATGCAGTATAGTCTTTG+GGG + Chr1:71334156-71334175 None:intergenic 40.0%
CTAGTAACGGTAAAGAGCAA+TGG + Chr1:71332386-71332405 None:intergenic 40.0%
CTCAAGGTTAGGAGCAAAAT+CGG - Chr1:71334578-71334597 MsG0180003980.01.T01:intron 40.0%
CTCAGTTGACATCTGATAGA+CGG - Chr1:71333358-71333377 MsG0180003980.01.T01:intron 40.0%
GAACCGTACAAATCATAACG+AGG + Chr1:71333019-71333038 None:intergenic 40.0%
GCCAATGCAGTATAGTCTTT+GGG + Chr1:71334157-71334176 None:intergenic 40.0%
GCTATCTGAGTTCCTTGTAA+GGG - Chr1:71333771-71333790 MsG0180003980.01.T01:intron 40.0%
GGATTTGAAGAAATCATGGG+TGG - Chr1:71332514-71332533 MsG0180003980.01.T01:intron 40.0%
GGTTGTTGACATTGCATACA+AGG - Chr1:71331504-71331523 MsG0180003980.01.T01:intron 40.0%
GTCTATCAGATGTCAACTGA+GGG + Chr1:71333359-71333378 None:intergenic 40.0%
TAAATCCTAGTTGCCAGAGT+TGG + Chr1:71333981-71334000 None:intergenic 40.0%
TACCTAAGGAAATGCACCTA+TGG - Chr1:71332571-71332590 MsG0180003980.01.T01:intron 40.0%
TCCCTACCCATCTTAAAAAC+TGG + Chr1:71334405-71334424 None:intergenic 40.0%
TCTCGCCATATGACAAATCA+AGG - Chr1:71332882-71332901 MsG0180003980.01.T01:intron 40.0%
TGAACAGAAGACCAAGTCTA+AGG + Chr1:71334125-71334144 None:intergenic 40.0%
TGCCAATGCAGTATAGTCTT+TGG + Chr1:71334158-71334177 None:intergenic 40.0%
! AAGGTATTCCCTGTATTCAC+TGG - Chr1:71334080-71334099 MsG0180003980.01.T01:intron 40.0%
! ATCAGTGTGAATTTTCCGTG+AGG - Chr1:71335710-71335729 MsG0180003980.01.T01:CDS 40.0%
! ATTTTGCTCCTAACCTTGAG+GGG + Chr1:71334578-71334597 None:intergenic 40.0%
! CACTGTTGGAATTTTCTCAC+AGG - Chr1:71335429-71335448 MsG0180003980.01.T01:intron 40.0%
! GATTTTGCTCCTAACCTTGA+GGG + Chr1:71334579-71334598 None:intergenic 40.0%
! GGAAAGTTTCAAGGTATTCC+AGG - Chr1:71334698-71334717 MsG0180003980.01.T01:intron 40.0%
! TTGTGGATTGCGGAAAATTG+TGG + Chr1:71332318-71332337 None:intergenic 40.0%
!! AGAGAGCTTTAGAGTGACAT+AGG + Chr1:71331456-71331475 None:intergenic 40.0%
!! AGGAGTGCTTATTTGAGCAA+TGG + Chr1:71332843-71332862 None:intergenic 40.0%
!! ATAGGTTGAAGAGCGTTTGA+TGG + Chr1:71331438-71331457 None:intergenic 40.0%
!! ATGTCTTATTTGGGACCGTA+CGG + Chr1:71333139-71333158 None:intergenic 40.0%
!! GAAAGGTATTACGGAAGACA+AGG + Chr1:71335403-71335422 None:intergenic 40.0%
!! GTGAAGACAAGTACTGGTAA+TGG - Chr1:71334445-71334464 MsG0180003980.01.T01:intron 40.0%
!! TATGTCACTCTAAAGCTCTC+TGG - Chr1:71331455-71331474 MsG0180003980.01.T01:intron 40.0%
!! TTTTGAAAGATGGAACGGAG+TGG + Chr1:71331368-71331387 None:intergenic 40.0%
AAATAGCGGCTATAGCGTAG+CGG - Chr1:71332280-71332299 MsG0180003980.01.T01:intron 45.0%
ACCAAAAGTGAACTGGCATC+AGG + Chr1:71332863-71332882 None:intergenic 45.0%
ACCCAGAAAGGGATTTGTGA+GGG - Chr1:71331611-71331630 MsG0180003980.01.T01:intron 45.0%
ACCTTAGACTGGAACAGTGT+CGG - Chr1:71334490-71334509 MsG0180003980.01.T01:intron 45.0%
AGAAAGGGGGGAAAGTTTCA+AGG - Chr1:71334689-71334708 MsG0180003980.01.T01:intron 45.0%
AGCAGACACTCCCTTTCTAA+AGG - Chr1:71331482-71331501 MsG0180003980.01.T01:intron 45.0%
AGCAGTGTGAAGACAAGTAC+TGG - Chr1:71334439-71334458 MsG0180003980.01.T01:intron 45.0%
ATTGGGCTACCTTAAGCTGA+AGG - Chr1:71334061-71334080 MsG0180003980.01.T01:intron 45.0%
CAATAGGAACAAACCCCTCA+AGG - Chr1:71334562-71334581 MsG0180003980.01.T01:intron 45.0%
CAGCTTAAGGTAGCCCAATA+AGG + Chr1:71334060-71334079 None:intergenic 45.0%
CAGGGAATACCTTCAGCTTA+AGG + Chr1:71334073-71334092 None:intergenic 45.0%
CCCCAAAGACTATACTGCAT+TGG - Chr1:71334153-71334172 MsG0180003980.01.T01:intron 45.0%
CGTCTATCAGATGTCAACTG+AGG + Chr1:71333360-71333379 None:intergenic 45.0%
CTCTATAGGTGTGAAAGGTG+AGG - Chr1:71333953-71333972 MsG0180003980.01.T01:intron 45.0%
GATGTCGAACAACTGATCCT+TGG - Chr1:71333803-71333822 MsG0180003980.01.T01:CDS 45.0%
GCAATGGTCTTCAAGCTAAC+TGG + Chr1:71332827-71332846 None:intergenic 45.0%
GCAGACACTCCCTTTCTAAA+GGG - Chr1:71331483-71331502 MsG0180003980.01.T01:intron 45.0%
GGAGAGCAAAACCCTCAAAT+TGG + Chr1:71335005-71335024 None:intergenic 45.0%
GGTATCCGCTGAACTTTCTA+TGG - Chr1:71334599-71334618 MsG0180003980.01.T01:intron 45.0%
GGTATGACTCCCAATAACGA+TGG - Chr1:71333312-71333331 MsG0180003980.01.T01:intron 45.0%
GTTGACATCTGATAGACGGA+AGG - Chr1:71333362-71333381 MsG0180003980.01.T01:intron 45.0%
TACCCAGAAAGGGATTTGTG+AGG - Chr1:71331610-71331629 MsG0180003980.01.T01:intron 45.0%
TCATCACAAGCGAGCTCTAT+AGG - Chr1:71333939-71333958 MsG0180003980.01.T01:intron 45.0%
TCCCATAGGTGCATTTCCTT+AGG + Chr1:71332576-71332595 None:intergenic 45.0%
TCTAGACACTGCAGCAACAA+TGG + Chr1:71333400-71333419 None:intergenic 45.0%
TGTGCAGAAAGAAGGGCTTT+GGG + Chr1:71331404-71331423 None:intergenic 45.0%
! AAGAGGAGTGTGCAGAAAGA+AGG + Chr1:71331412-71331431 None:intergenic 45.0%
! AGAGGAGTGTGCAGAAAGAA+GGG + Chr1:71331411-71331430 None:intergenic 45.0%
! CACTAACCAAGCTTTGGCAA+TGG - Chr1:71334357-71334376 MsG0180003980.01.T01:intron 45.0%
! CGATTTTGCTCCTAACCTTG+AGG + Chr1:71334580-71334599 None:intergenic 45.0%
! TCCTGATGCCAGTTCACTTT+TGG - Chr1:71332859-71332878 MsG0180003980.01.T01:intron 45.0%
! TTTGAGGGTTTTGCTCTCCT+TGG - Chr1:71335006-71335025 MsG0180003980.01.T01:intron 45.0%
!! AAAGAAGTCTTGGTGATGCC+TGG - Chr1:71333834-71333853 MsG0180003980.01.T01:CDS 45.0%
!! AGAAGGGCTTTGGGAACAAT+TGG + Chr1:71331395-71331414 None:intergenic 45.0%
!! AGAGCGTTTGATGGTGAAAG+AGG + Chr1:71331429-71331448 None:intergenic 45.0%
!! TGGTGTTGTTGGAGAGAAAG+AGG + Chr1:71331348-71331367 None:intergenic 45.0%
!! AACTATATTAAAAATATTAA+AGG - Chr1:71333691-71333710 MsG0180003980.01.T01:intron 5.0%
AGCCCTCACAAATCCCTTTC+TGG + Chr1:71331616-71331635 None:intergenic 50.0%
AGGAACCAACTCTGGCAACT+AGG - Chr1:71333973-71333992 MsG0180003980.01.T01:intron 50.0%
AGTCGATTGTTAGGCACGTG+AGG + Chr1:71334318-71334337 None:intergenic 50.0%
CACTGCAGCAACAATGGAAG+TGG + Chr1:71333394-71333413 None:intergenic 50.0%
CAGCTGCTGAAACCTTAGAC+TGG - Chr1:71334479-71334498 MsG0180003980.01.T01:intron 50.0%
CGGATGGAGAAAAGCAAGGT+AGG - Chr1:71334510-71334529 MsG0180003980.01.T01:intron 50.0%
GAAAGGTGAGGAACCAACTC+TGG - Chr1:71333965-71333984 MsG0180003980.01.T01:intron 50.0%
GCCCTCACAAATCCCTTTCT+GGG + Chr1:71331615-71331634 None:intergenic 50.0%
GCGAGCTCTATAGGTGTGAA+AGG - Chr1:71333948-71333967 MsG0180003980.01.T01:intron 50.0%
GCTCGCTTGTGATGATCAGT+TGG + Chr1:71333934-71333953 None:intergenic 50.0%
GGAACAAACCCCTCAAGGTT+AGG - Chr1:71334567-71334586 MsG0180003980.01.T01:intron 50.0%
GGAGCTCGCAAAAGAAGTCT+TGG - Chr1:71333824-71333843 MsG0180003980.01.T01:CDS 50.0%
GTGTCGGATGGAGAAAAGCA+AGG - Chr1:71334506-71334525 MsG0180003980.01.T01:intron 50.0%
GTGTGCAGAAAGAAGGGCTT+TGG + Chr1:71331405-71331424 None:intergenic 50.0%
TCCGACACTGTTCCAGTCTA+AGG + Chr1:71334494-71334513 None:intergenic 50.0%
TGAGCGCACTAACCAAGCTT+TGG - Chr1:71334351-71334370 MsG0180003980.01.T01:CDS 50.0%
TGGCGAGACCAAAAGTGAAC+TGG + Chr1:71332870-71332889 None:intergenic 50.0%
! ACAAGGCGTAGAGCATCTCA+TGG - Chr1:71331319-71331338 MsG0180003980.01.T01:CDS 50.0%
! GACTTCTTTTGCGAGCTCCA+AGG + Chr1:71333823-71333842 None:intergenic 50.0%
! TAGACTGGAACAGTGTCGGA+TGG - Chr1:71334494-71334513 MsG0180003980.01.T01:intron 50.0%
! TGTGTGCCATTGCCAAAGCT+TGG + Chr1:71334366-71334385 None:intergenic 50.0%
!! AAGTCTTGGTGATGCCTGGA+AGG - Chr1:71333838-71333857 MsG0180003980.01.T01:CDS 50.0%
!! ATGGAACGGAGTGGTGTTGT+TGG + Chr1:71331359-71331378 None:intergenic 50.0%
!! GGGCTTTGGGAACAATTGGA+AGG + Chr1:71331391-71331410 None:intergenic 50.0%
ACAACTCAACGGGGAGAGAG+AGG + Chr1:71333080-71333099 None:intergenic 55.0%
CAACTCAACGGGGAGAGAGA+GGG + Chr1:71333079-71333098 None:intergenic 55.0%
GCTTTGGCAATGGCACACAG+AGG - Chr1:71334367-71334386 MsG0180003980.01.T01:intron 55.0%
GGCAATGGCACACAGAGGTG+AGG - Chr1:71334372-71334391 MsG0180003980.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr1 gene 71331279 71335899 71331279 ID=MsG0180003980.01;Name=MsG0180003980.01
Chr1 mRNA 71331279 71335899 71331279 ID=MsG0180003980.01.T01;Parent=MsG0180003980.01;Name=MsG0180003980.01.T01;_AED=0.48;_eAED=0.49;_QI=59|0.85|0.87|1|1|1|8|0|249
Chr1 exon 71331279 71331356 71331279 ID=MsG0180003980.01.T01:exon:4841;Parent=MsG0180003980.01.T01
Chr1 exon 71331677 71331727 71331677 ID=MsG0180003980.01.T01:exon:4840;Parent=MsG0180003980.01.T01
Chr1 exon 71331833 71331889 71331833 ID=MsG0180003980.01.T01:exon:4839;Parent=MsG0180003980.01.T01
Chr1 exon 71333795 71333906 71333795 ID=MsG0180003980.01.T01:exon:4838;Parent=MsG0180003980.01.T01
Chr1 exon 71334275 71334372 71334275 ID=MsG0180003980.01.T01:exon:4837;Parent=MsG0180003980.01.T01
Chr1 exon 71335314 71335409 71335314 ID=MsG0180003980.01.T01:exon:4836;Parent=MsG0180003980.01.T01
Chr1 exon 71335492 71335561 71335492 ID=MsG0180003980.01.T01:exon:4835;Parent=MsG0180003980.01.T01
Chr1 exon 71335653 71335899 71335653 ID=MsG0180003980.01.T01:exon:4834;Parent=MsG0180003980.01.T01
Chr1 five_prime_UTR 71335841 71335899 71335841 ID=MsG0180003980.01.T01:five_prime_utr;Parent=MsG0180003980.01.T01
Chr1 CDS 71335653 71335840 71335653 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Chr1 CDS 71335492 71335561 71335492 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Chr1 CDS 71335314 71335409 71335314 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Chr1 CDS 71334275 71334372 71334275 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Chr1 CDS 71333795 71333906 71333795 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Chr1 CDS 71331833 71331889 71331833 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Chr1 CDS 71331677 71331727 71331677 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Chr1 CDS 71331279 71331356 71331279 ID=MsG0180003980.01.T01:cds;Parent=MsG0180003980.01.T01
Gene Sequence

>MsG0180003980.01.T01

ATGGCAACCTCTTTCTCTCCAACAACACCACTCCGTTCCATCTTTCAAAACCTTCCAATTGTTCCCAAAGCCCTTCTTTCTGCACACTCCTCTTTCACCATCAAACGCTCTTCAACCTATGTCACTCTAAAGCTCTCTGGCAGTAGCAGACACTCCCTTTCTAAAGGGTTGTTGACATTGCATACAAGAAAGGGATTTGTGAGGGCTGCTACTATTGAAGAAATTGAAGCTGAAAAAGCATCTATTGAGAATGATGTTAAAAGTAGGATGGAAAGAACTCTTGACAATGTTAGGACTAATTTCAGTTCTATAAGAACTGGGAGAGCAACCCCGTCTATGCTTGACAAAATTGAGGTGGAATACTATGGATCTCCAGTTAGCTTGAAGACCATTGCTCAAATAAGCACTCCTGATGCCAGTTCACTTTTGGTCTCGCCATATGACAAATCAAGCTTGAAGGCTATAGAGAAAGCTATAGTTAACTCTGATGTTGGTATGACTCCCAATAACGATGGAGAAGTGATACGGTTAAGTATCCCTCAGTTGACATCTGATAGACGGAAGGTGGCTTTGAGGAACATAAGAAGAGATGCTTTGAAAGCTTATGAAAAACTTGAAAAGGATAAGAAGCTCTCAGAAGATAATGTAAAAGATTTGTCTAGCGATTTGCAGAAGCTGACTGATGATTATATAAAGAAGGTTGATGCCCTCTACAAACAGAAAGAAAAGGTATTATATATTTCCACTTGA

Protein sequence

>MsG0180003980.01.T01

MATSFSPTTPLRSIFQNLPIVPKALLSAHSSFTIKRSSTYVTLKLSGSSRHSLSKGLLTLHTRKGFVRAATIEEIEAEKASIENDVKSRMERTLDNVRTNFSSIRTGRATPSMLDKIEVEYYGSPVSLKTIAQISTPDASSLLVSPYDKSSLKAIEKAIVNSDVGMTPNNDGEVIRLSIPQLTSDRRKVALRNIRRDALKAYEKLEKDKKLSEDNVKDLSSDLQKLTDDYIKKVDALYKQKEKVLYIST*