Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048669.01.T01 | XP_003604901.1 | 98.485 | 462 | 7 | 0 | 2 | 463 | 15 | 476 | 0 | 944 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048669.01.T01 | Q7X9A0 | 82.833 | 466 | 70 | 6 | 3 | 463 | 16 | 476 | 0 | 789 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048669.01.T01 | G7JTD2 | 98.485 | 462 | 7 | 0 | 2 | 463 | 15 | 476 | 0.0 | 944 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048669.01 | MsG0080049062.01 | 0.832479 | 9.236312e-56 | 1.033612e-52 |
| MsG0080048669.01 | MsG0180000467.01 | 0.800345 | 1.505296e-48 | 6.992777e-46 |
| MsG0080048669.01 | MsG0180003985.01 | 0.820815 | 5.620460e-53 | 4.493964e-50 |
| MsG0080048669.01 | MsG0180004553.01 | 0.800292 | 1.543544e-48 | 7.160671e-46 |
| MsG0080048669.01 | MsG0280006452.01 | 0.800595 | 1.338704e-48 | 6.258157e-46 |
| MsG0080048669.01 | MsG0280007247.01 | 0.806560 | 7.752508e-50 | 4.221052e-47 |
| MsG0080048669.01 | MsG0280009541.01 | 0.844649 | 6.635443e-59 | 1.078307e-55 |
| MsG0080048669.01 | MsG0280009579.01 | 0.802809 | 4.702967e-49 | 2.325798e-46 |
| MsG0080048669.01 | MsG0280009776.01 | 0.801424 | 9.063858e-49 | 4.326969e-46 |
| MsG0080048669.01 | MsG0380012065.01 | 0.813589 | 2.371118e-51 | 1.554828e-48 |
| MsG0080048669.01 | MsG0380013506.01 | 0.811129 | 8.168376e-51 | 5.015301e-48 |
| MsG0080048669.01 | MsG0380015439.01 | 0.823551 | 1.303088e-53 | 1.125554e-50 |
| MsG0080048669.01 | MsG0380015619.01 | 0.807425 | 5.086164e-50 | 2.831989e-47 |
| MsG0080048669.01 | MsG0380015719.01 | 0.813805 | 2.124780e-51 | 1.401484e-48 |
| MsG0080048669.01 | MsG0380015974.01 | 0.808890 | 2.479173e-50 | 1.434361e-47 |
| MsG0080048669.01 | MsG0380016241.01 | 0.838070 | 3.576510e-57 | 4.736784e-54 |
| MsG0080048669.01 | MsG0380016354.01 | 0.808304 | 3.307155e-50 | 1.884331e-47 |
| MsG0080048669.01 | MsG0380016790.01 | 0.805241 | 1.467727e-49 | 7.725740e-47 |
| MsG0080048669.01 | MsG0380017895.01 | 0.807775 | 4.286008e-50 | 2.408256e-47 |
| MsG0080048669.01 | MsG0380017962.01 | 0.810525 | 1.103972e-50 | 6.669722e-48 |
| MsG0080048669.01 | MsG0380018066.01 | 0.803634 | 3.174118e-49 | 1.603106e-46 |
| MsG0080048669.01 | MsG0480018190.01 | 0.814443 | 1.536595e-51 | 1.031205e-48 |
| MsG0080048669.01 | MsG0480018494.01 | 0.800614 | 1.326882e-48 | 6.205953e-46 |
| MsG0080048669.01 | MsG0480018963.01 | 0.844506 | 7.246169e-59 | 1.172375e-55 |
| MsG0080048669.01 | MsG0480021143.01 | 0.805146 | 1.536849e-49 | 8.070112e-47 |
| MsG0080048669.01 | MsG0480021205.01 | 0.816097 | 6.592664e-52 | 4.628295e-49 |
| MsG0080048669.01 | MsG0480021390.01 | 0.832854 | 7.454639e-56 | 8.436001e-53 |
| MsG0080048669.01 | MsG0480021667.01 | 0.822590 | 2.183295e-53 | 1.835591e-50 |
| MsG0080048669.01 | MsG0480022436.01 | 0.847432 | 1.161016e-59 | 2.063284e-56 |
| MsG0080048669.01 | MsG0480022437.01 | 0.874148 | 8.470193e-68 | 3.771513e-64 |
| MsG0080048669.01 | MsG0480022626.01 | 0.829473 | 5.048242e-55 | 5.171799e-52 |
| MsG0080048669.01 | MsG0480023217.01 | 0.813884 | 2.041957e-51 | 1.349703e-48 |
| MsG0080048669.01 | MsG0480023704.01 | 0.817928 | 2.556844e-52 | 1.887247e-49 |
| MsG0080048669.01 | MsG0480023818.01 | 0.802403 | 5.705264e-49 | 2.792299e-46 |
| MsG0080048669.01 | MsG0580024128.01 | 0.804891 | 1.737369e-49 | 9.064307e-47 |
| MsG0080048669.01 | MsG0580024442.01 | 0.802587 | 5.227047e-49 | 2.570201e-46 |
| MsG0080048669.01 | MsG0580025105.01 | 0.800405 | 1.463658e-48 | 6.809586e-46 |
| MsG0080048669.01 | MsG0580025392.01 | 0.839078 | 1.964754e-57 | 2.683366e-54 |
| MsG0080048669.01 | MsG0780035994.01 | 0.803864 | 2.844685e-49 | 1.445290e-46 |
| MsG0080048669.01 | MsG0780038834.01 | 0.804240 | 2.375284e-49 | 1.218421e-46 |
| MsG0080048669.01 | MsG0780039860.01 | 0.812939 | 3.293311e-51 | 2.121716e-48 |
| MsG0080048669.01 | MsG0780040121.01 | 0.800755 | 1.241814e-48 | 5.828741e-46 |
| MsG0080048669.01 | MsG0780040159.01 | 0.814022 | 1.903274e-51 | 1.262778e-48 |
| MsG0080048669.01 | MsG0780040685.01 | 0.809637 | 1.714959e-50 | 1.012313e-47 |
| MsG0080048669.01 | MsG0780041478.01 | 0.831559 | 1.558926e-55 | 1.697895e-52 |
| MsG0080048669.01 | MsG0780041492.01 | 0.811308 | 7.470399e-51 | 4.608117e-48 |
| MsG0080048669.01 | MsG0780041809.01 | 0.800429 | 1.447323e-48 | 6.737770e-46 |
| MsG0080048669.01 | MsG0880042043.01 | 0.804517 | 2.079740e-49 | 1.074451e-46 |
| MsG0080048669.01 | MsG0880045778.01 | 0.813478 | 2.508008e-51 | 1.639680e-48 |
| MsG0080048669.01 | MsG0880046584.01 | 0.822255 | 2.611767e-53 | 2.174676e-50 |
| MsG0080048669.01 | MsG0880046876.01 | 0.800918 | 1.150377e-48 | 5.422337e-46 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048669.01.T01 | MTR_4g021210 | 98.485 | 462 | 7 | 0 | 2 | 463 | 15 | 476 | 0.0 | 944 |
| MsG0080048669.01.T01 | MTR_5g080450 | 83.514 | 461 | 75 | 1 | 3 | 463 | 16 | 475 | 0.0 | 820 |
| MsG0080048669.01.T01 | MTR_3g068030 | 84.086 | 421 | 65 | 2 | 5 | 424 | 17 | 436 | 0.0 | 738 |
| MsG0080048669.01.T01 | MTR_3g068030 | 84.086 | 421 | 65 | 2 | 5 | 424 | 3 | 422 | 0.0 | 736 |
| MsG0080048669.01.T01 | MTR_2g105480 | 53.767 | 292 | 128 | 6 | 121 | 406 | 123 | 413 | 5.24e-109 | 329 |
| MsG0080048669.01.T01 | MTR_2g105480 | 60.262 | 229 | 87 | 4 | 121 | 346 | 123 | 350 | 2.88e-97 | 296 |
| MsG0080048669.01.T01 | MTR_2g105480 | 65.730 | 178 | 57 | 4 | 121 | 295 | 123 | 299 | 9.87e-77 | 243 |
| MsG0080048669.01.T01 | MTR_0373s0020 | 96.429 | 28 | 1 | 0 | 426 | 453 | 11 | 38 | 2.86e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0080048669.01.T01 | AT2G39730 | 79.437 | 462 | 91 | 2 | 3 | 463 | 16 | 474 | 0.0 | 769 |
| MsG0080048669.01.T01 | AT2G39730 | 78.472 | 432 | 89 | 2 | 3 | 433 | 16 | 444 | 0.0 | 707 |
| MsG0080048669.01.T01 | AT2G39730 | 79.343 | 426 | 84 | 2 | 3 | 427 | 16 | 438 | 0.0 | 705 |
| MsG0080048669.01.T01 | AT1G73110 | 51.724 | 319 | 145 | 7 | 94 | 406 | 15 | 330 | 1.80e-110 | 330 |
| MsG0080048669.01.T01 | AT1G73110 | 52.564 | 312 | 139 | 7 | 101 | 406 | 119 | 427 | 5.58e-109 | 329 |
Find 127 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTAAGATTCCTCTCATTT+TGG | 0.116167 | contig397end:-30779 | MsG0080048669.01.T01:CDS |
| GTATATTGCACCCGCATTTA+TGG | 0.150643 | contig397end:-30848 | MsG0080048669.01.T01:CDS |
| GAGTTTGTCTGGTAACTTTA+AGG | 0.180254 | contig397end:-31585 | MsG0080048669.01.T01:CDS |
| GAAGGGTCAGCGCAACCTTC+TGG | 0.200974 | contig397end:+29181 | None:intergenic |
| ATGAGAGGAATCTTAATATT+TGG | 0.205578 | contig397end:+30784 | None:intergenic |
| TCTCCGGCGCTCATCATTAT+AGG | 0.224173 | contig397end:+30501 | None:intergenic |
| TCTTCACATTCTCTTGTTCT+TGG | 0.240935 | contig397end:+29457 | None:intergenic |
| TGCATTAATCTCACCACTTT+AGG | 0.260377 | contig397end:-28998 | MsG0080048669.01.T01:three_prime_UTR |
| TGAGGTATTTGTCAGCTAAT+TGG | 0.262434 | contig397end:+29430 | None:intergenic |
| ATGCGTCCGTCACGAATTAA+AGG | 0.289596 | contig397end:+30180 | None:intergenic |
| GTCTGGTAACTTTAAGGTTT+CGG | 0.299605 | contig397end:-31579 | MsG0080048669.01.T01:CDS |
| TATTTACCTGATTCCCATCT+TGG | 0.330825 | contig397end:+30702 | None:intergenic |
| CTTTGCCTAATCAACTTTGC+AGG | 0.332302 | contig397end:+30453 | None:intergenic |
| AATGCACCTTACATAAAATA+TGG | 0.337542 | contig397end:+29015 | None:intergenic |
| TCATTTCCAGTGACGATGAT+AGG | 0.342485 | contig397end:+30222 | None:intergenic |
| CTTAAGAGAGTACATAAATA+TGG | 0.349613 | contig397end:-29091 | MsG0080048669.01.T01:three_prime_UTR |
| GCAACTTCCATCGTCACTTC+TGG | 0.351528 | contig397end:+29135 | None:intergenic |
| ATCAAGACTGGAAACTTCTA+TGG | 0.360535 | contig397end:-29372 | MsG0080048669.01.T01:intron |
| AATGATGAGCGCCGGAGAAT+TGG | 0.362682 | contig397end:-30496 | MsG0080048669.01.T01:CDS |
| TCCAGCCCATCTGTCCTTTG+AGG | 0.369839 | contig397end:+31526 | None:intergenic |
| CTTGACAAGCTACTAGAGTA+TGG | 0.372362 | contig397end:-29492 | MsG0080048669.01.T01:CDS |
| TCGCAGAACTAGCTTTCTTA+AGG | 0.379560 | contig397end:+31621 | None:intergenic |
| CTCTTCTTTGTTGTACATAC+CGG | 0.388448 | contig397end:+30257 | None:intergenic |
| GGATATGTTCAGGTACAATA+TGG | 0.389026 | contig397end:-30890 | MsG0080048669.01.T01:intron |
| AGCTTGTCAAGAGTCATCTT+TGG | 0.390025 | contig397end:+29504 | None:intergenic |
| CTCCGGCGCTCATCATTATA+GGG | 0.391535 | contig397end:+30502 | None:intergenic |
| AGTTACCAGACAAACTCTTC+TGG | 0.399477 | contig397end:+31591 | None:intergenic |
| AAGGGTCAGCGCAACCTTCT+GGG | 0.410738 | contig397end:+29182 | None:intergenic |
| CCTACCAATGTTCAACTTCC+CGG | 0.413313 | contig397end:-30276 | MsG0080048669.01.T01:CDS |
| AAGATTGTCGACACATTCCC+TGG | 0.416886 | contig397end:-30063 | MsG0080048669.01.T01:CDS |
| TGAGGGTTGCATTTACCATC+TGG | 0.421559 | contig397end:+30316 | None:intergenic |
| TTTCAAGCTCCAACGGATGC+TGG | 0.424875 | contig397end:-31437 | MsG0080048669.01.T01:CDS |
| TCTTTGCCAAGATGGGAATC+AGG | 0.428867 | contig397end:-30708 | MsG0080048669.01.T01:intron |
| ATTTCCACTTTCCAATTCTC+CGG | 0.429162 | contig397end:+30485 | None:intergenic |
| GAGAGCCTGCAAAGTTGATT+AGG | 0.432564 | contig397end:-30458 | MsG0080048669.01.T01:CDS |
| GAAGTCAGGAATTGGATATC+TGG | 0.433568 | contig397end:-29594 | MsG0080048669.01.T01:CDS |
| TAAATGCGGGTGCAATATAC+AGG | 0.438233 | contig397end:+30851 | None:intergenic |
| TACCTCAGTGAGGCAGCTCT+TGG | 0.438518 | contig397end:-29414 | MsG0080048669.01.T01:CDS |
| ATGACGATGAAGTCAGGAAT+TGG | 0.439434 | contig397end:-29602 | MsG0080048669.01.T01:CDS |
| TCCAGCCAGAAGAGTTTGTC+TGG | 0.441643 | contig397end:-31596 | MsG0080048669.01.T01:CDS |
| AATATGGACAACACAGTTGA+TGG | 0.442941 | contig397end:-30874 | MsG0080048669.01.T01:CDS |
| ATCTTTGGTTGCTCGAAAGT+TGG | 0.445047 | contig397end:+29519 | None:intergenic |
| ATCTTGACAATGTCATCCTT+AGG | 0.455344 | contig397end:+30081 | None:intergenic |
| TTCCCCTTGTGATATCCTGT+TGG | 0.457655 | contig397end:+31480 | None:intergenic |
| ACAAAATATACAACCTAAAG+TGG | 0.462806 | contig397end:+28985 | None:intergenic |
| AATAATGATGCTATCAAGAC+TGG | 0.465950 | contig397end:-29384 | MsG0080048669.01.T01:CDS |
| CAACCTTCTGGGACAGGTAA+AGG | 0.470524 | contig397end:+29193 | None:intergenic |
| CAGGATATCACAAGGGGAAA+GGG | 0.479596 | contig397end:-31476 | MsG0080048669.01.T01:CDS |
| TTTGGTTGCTCGAAAGTTGG+AGG | 0.479859 | contig397end:+29522 | None:intergenic |
| ACCTCAAAGGACAGATGGGC+TGG | 0.482103 | contig397end:-31527 | MsG0080048669.01.T01:CDS |
| TTGGGCATTTGGGGAGGCAA+AGG | 0.485012 | contig397end:-30760 | MsG0080048669.01.T01:CDS |
| CGCGTCCCTATCATCGTCAC+TGG | 0.485500 | contig397end:-30228 | MsG0080048669.01.T01:CDS |
| GCGTCCGACATTATCAGAAA+AGG | 0.491800 | contig397end:-30420 | MsG0080048669.01.T01:CDS |
| TTCATCAATGATCTTGATGC+AGG | 0.493471 | contig397end:-30381 | MsG0080048669.01.T01:CDS |
| TGACACCTCAGATGACCAAC+AGG | 0.496044 | contig397end:-31495 | MsG0080048669.01.T01:CDS |
| GAGTGTATGACGATGAAGTC+AGG | 0.497686 | contig397end:-29608 | MsG0080048669.01.T01:CDS |
| CCGGGAAGTTGAACATTGGT+AGG | 0.497705 | contig397end:+30276 | None:intergenic |
| GGCTTACCGATTGACTGTCC+AGG | 0.503024 | contig397end:+30045 | None:intergenic |
| TTTAATTCGTGACGGACGCA+TGG | 0.505825 | contig397end:-30178 | MsG0080048669.01.T01:CDS |
| GGTATTGGCGTGGAGAGTAT+TGG | 0.514744 | contig397end:-29573 | MsG0080048669.01.T01:CDS |
| AGCAGACCTCAAAGGACAGA+TGG | 0.514834 | contig397end:-31532 | MsG0080048669.01.T01:CDS |
| TCCTATGATTATATCAGTAC+CGG | 0.515211 | contig397end:-31392 | MsG0080048669.01.T01:CDS |
| TCAGCGCAACCTTCTGGGAC+AGG | 0.517907 | contig397end:+29187 | None:intergenic |
| TCTTGACAATGTCATCCTTA+GGG | 0.521614 | contig397end:+30082 | None:intergenic |
| CAGGACAGATGGTGTCCCTA+AGG | 0.522125 | contig397end:-30097 | MsG0080048669.01.T01:CDS |
| AGGAATTGGATATCTGGTAT+TGG | 0.523533 | contig397end:-29588 | MsG0080048669.01.T01:CDS |
| ACAGGATATCACAAGGGGAA+AGG | 0.531778 | contig397end:-31477 | MsG0080048669.01.T01:CDS |
| ACATTCCCTGGACAGTCAAT+CGG | 0.532331 | contig397end:-30051 | MsG0080048669.01.T01:intron |
| ACCGGTACTGATATAATCAT+AGG | 0.533522 | contig397end:+31391 | None:intergenic |
| GAATTGGAAAGTGGAAATGC+AGG | 0.534950 | contig397end:-30480 | MsG0080048669.01.T01:CDS |
| AAGACTTGTGAATTCAAAAG+AGG | 0.535398 | contig397end:-29547 | MsG0080048669.01.T01:CDS |
| CATTTCCAGTGACGATGATA+GGG | 0.536553 | contig397end:+30223 | None:intergenic |
| TGATAATGTCGGACGCCTCA+CGG | 0.537380 | contig397end:+30427 | None:intergenic |
| AATGATCTTGATGCAGGAGC+TGG | 0.538362 | contig397end:-30375 | MsG0080048669.01.T01:CDS |
| TATCACAAGGGGAAAGGGAA+AGG | 0.540011 | contig397end:-31471 | MsG0080048669.01.T01:CDS |
| TGAGCTTGTCTTTGCCAAGA+TGG | 0.545502 | contig397end:-30716 | MsG0080048669.01.T01:CDS |
| GATGCAGGAGCTGGTAGAAT+GGG | 0.546512 | contig397end:-30366 | MsG0080048669.01.T01:CDS |
| ACCAGACAAACTCTTCTGGC+TGG | 0.558437 | contig397end:+31595 | None:intergenic |
| CCATCGTCACTTCTGGCTGT+CGG | 0.561082 | contig397end:+29142 | None:intergenic |
| ATTTGGGGAGGCAAAGGTCA+AGG | 0.561672 | contig397end:-30754 | MsG0080048669.01.T01:CDS |
| CAGTGTCTTTCAAGCTCCAA+CGG | 0.565417 | contig397end:-31444 | MsG0080048669.01.T01:CDS |
| ATGAACTTACTGGCGAAGAC+CGG | 0.565800 | contig397end:+31373 | None:intergenic |
| TGATGCAGGAGCTGGTAGAA+TGG | 0.573216 | contig397end:-30367 | MsG0080048669.01.T01:CDS |
| AAGAACAAGAGAATGTGAAG+AGG | 0.574498 | contig397end:-29455 | MsG0080048669.01.T01:CDS |
| ACAAGCTTGTCCATAAATGC+GGG | 0.576151 | contig397end:+30838 | None:intergenic |
| GGTTGTCAGCAATGTTCATG+AGG | 0.579374 | contig397end:+30298 | None:intergenic |
| TCTTCTTTGTTGTACATACC+GGG | 0.579969 | contig397end:+30258 | None:intergenic |
| GTTCCTTTACCTGTCCCAGA+AGG | 0.583970 | contig397end:-29196 | MsG0080048669.01.T01:CDS |
| GTCATACACTCTAGCCCTCA+AGG | 0.585052 | contig397end:+29620 | None:intergenic |
| GACACTTATAGAAAGCAAGT+TGG | 0.586229 | contig397end:-28928 | MsG0080048669.01.T01:three_prime_UTR |
| CGGGAAGTTGAACATTGGTA+GGG | 0.586332 | contig397end:+30277 | None:intergenic |
| CCCCAAATGCCCAAAATGAG+AGG | 0.592582 | contig397end:+30769 | None:intergenic |
| AGATGATTGTGCAAAATGAA+AGG | 0.592889 | contig397end:+28891 | None:intergenic |
| GCAGACCTCAAAGGACAGAT+GGG | 0.592933 | contig397end:-31531 | MsG0080048669.01.T01:CDS |
| GAGCTTGTCTTTGCCAAGAT+GGG | 0.595810 | contig397end:-30715 | MsG0080048669.01.T01:CDS |
| GACAAGCTTGTCCATAAATG+CGG | 0.599740 | contig397end:+30837 | None:intergenic |
| CACAAGGGGAAAGGGAAAGG+TGG | 0.605010 | contig397end:-31468 | MsG0080048669.01.T01:CDS |
| GCTTACCGATTGACTGTCCA+GGG | 0.605055 | contig397end:+30046 | None:intergenic |
| GTTGTCAGCAATGTTCATGA+GGG | 0.605287 | contig397end:+30299 | None:intergenic |
| TGTATGCAGTTGATATTGAA+CGG | 0.610071 | contig397end:-31692 | MsG0080048669.01.T01:CDS |
| AGACTTGTGAATTCAAAAGA+GGG | 0.610232 | contig397end:-29546 | MsG0080048669.01.T01:CDS |
| TATGCTCCTTTAATTCGTGA+CGG | 0.610288 | contig397end:-30186 | MsG0080048669.01.T01:CDS |
| AGCCCTATAATGATGAGCGC+CGG | 0.610963 | contig397end:-30504 | MsG0080048669.01.T01:CDS |
| TAGTGAGTTCCAGCATCCGT+TGG | 0.612756 | contig397end:+31428 | None:intergenic |
| AGCGCCGGAGAATTGGAAAG+TGG | 0.612918 | contig397end:-30489 | MsG0080048669.01.T01:CDS |
| CAGTGACGATGATAGGGACG+CGG | 0.613056 | contig397end:+30229 | None:intergenic |
| AGAACAAGAGAATGTGAAGA+GGG | 0.613350 | contig397end:-29454 | MsG0080048669.01.T01:CDS |
| TGAGGAAAAGCAGACCTCAA+AGG | 0.617972 | contig397end:-31540 | MsG0080048669.01.T01:CDS |
| GATATCCTGTTGGTCATCTG+AGG | 0.618471 | contig397end:+31490 | None:intergenic |
| ATATTGAACGGCTCTAGCAG+TGG | 0.620869 | contig397end:-31680 | MsG0080048669.01.T01:CDS |
| TTGGATATCTGGTATTGGCG+TGG | 0.621027 | contig397end:-29583 | MsG0080048669.01.T01:CDS |
| CTGCAAAGTTGATTAGGCAA+AGG | 0.623429 | contig397end:-30452 | MsG0080048669.01.T01:CDS |
| GATAGAGTTGGTGTTTGTCA+AGG | 0.623978 | contig397end:-30126 | MsG0080048669.01.T01:CDS |
| TGATTGTGCAAAATGAAAGG+AGG | 0.628397 | contig397end:+28894 | None:intergenic |
| CCGACAGCCAGAAGTGACGA+TGG | 0.630990 | contig397end:-29142 | MsG0080048669.01.T01:CDS |
| CCTACTCGTGATGATAGAGT+TGG | 0.631196 | contig397end:-30138 | MsG0080048669.01.T01:CDS |
| GACCAACAGGATATCACAAG+GGG | 0.645088 | contig397end:-31482 | MsG0080048669.01.T01:CDS |
| CATACCGGGAAGTTGAACAT+TGG | 0.657559 | contig397end:+30272 | None:intergenic |
| AGTGACGATGATAGGGACGC+GGG | 0.665756 | contig397end:+30230 | None:intergenic |
| ATACACAGTCAATAACCAGA+TGG | 0.667649 | contig397end:-30331 | MsG0080048669.01.T01:CDS |
| CCAACTCTATCATCACGAGT+AGG | 0.670525 | contig397end:+30138 | None:intergenic |
| ATGACCAACAGGATATCACA+AGG | 0.671981 | contig397end:-31484 | MsG0080048669.01.T01:CDS |
| GCAGGAGCTGGTAGAATGGG+TGG | 0.672116 | contig397end:-30363 | MsG0080048669.01.T01:CDS |
| TGACCAACAGGATATCACAA+GGG | 0.701639 | contig397end:-31483 | MsG0080048669.01.T01:CDS |
| CTCCAAGAGCTGCCTCACTG+AGG | 0.729949 | contig397end:+29412 | None:intergenic |
| GATTAGGCAAAGGTACCGTG+AGG | 0.742836 | contig397end:-30442 | MsG0080048669.01.T01:CDS |
| AGCTGACAAATACCTCAGTG+AGG | 0.750394 | contig397end:-29424 | MsG0080048669.01.T01:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTGAATTATTTTG+AGG | - | contig397end:29524-29543 | MsG0080048669.01.T01:CDS | 10.0% |
| !! | TAATAGATATTTGTATCAAT+TGG | + | contig397end:29392-29411 | None:intergenic | 15.0% |
| !! | TGATATTCTATGTTATAATT+TGG | - | contig397end:29555-29574 | MsG0080048669.01.T01:CDS | 15.0% |
| !!! | TACACAAAATTTTATCAAAA+AGG | + | contig397end:29469-29488 | None:intergenic | 15.0% |
| !!! | TGTATATTTTGTTTTATTGA+TGG | - | contig397end:31618-31637 | MsG0080048669.01.T01:CDS | 15.0% |
| !! | AAACAATAAGATAACATTCT+TGG | + | contig397end:31351-31370 | None:intergenic | 20.0% |
| !! | AAGAATGTTATCTTATTGTT+TGG | - | contig397end:31350-31369 | MsG0080048669.01.T01:intron | 20.0% |
| !! | AATCTTTGTTAACTGAATTA+AGG | + | contig397end:29249-29268 | None:intergenic | 20.0% |
| !! | ATAAATATAAGGATCTTGTT+TGG | + | contig397end:30869-30888 | None:intergenic | 20.0% |
| !! | GATAATAACAGAAAAATCAA+AGG | + | contig397end:31251-31270 | None:intergenic | 20.0% |
| !! | TCACGGTTAATATAAATATA+AGG | + | contig397end:30880-30899 | None:intergenic | 20.0% |
| !!! | ATGCTAATTGACTTATTTTT+AGG | - | contig397end:29313-29332 | MsG0080048669.01.T01:intron | 20.0% |
| !!! | ATTTTGAATTATTTTGAGGT+TGG | - | contig397end:29528-29547 | MsG0080048669.01.T01:CDS | 20.0% |
| !!! | GTTTTCTTTGTAGATTTTTT+TGG | - | contig397end:30947-30966 | MsG0080048669.01.T01:intron | 20.0% |
| !!! | TTCCTGTATTATTTGATTTA+TGG | - | contig397end:29500-29519 | MsG0080048669.01.T01:CDS | 20.0% |
| ! | AAAAATGCTGAATTTGTCAT+AGG | + | contig397end:28942-28961 | None:intergenic | 25.0% |
| ! | AATAATCTGAAAACAGCTTA+CGG | + | contig397end:30694-30713 | None:intergenic | 25.0% |
| ! | AATGCACCTTACATAAAATA+TGG | + | contig397end:31580-31599 | None:intergenic | 25.0% |
| ! | ACAAAATATACAACCTAAAG+TGG | + | contig397end:31610-31629 | None:intergenic | 25.0% |
| ! | ACAATGGAATTAAACTAACT+TGG | + | contig397end:29951-29970 | None:intergenic | 25.0% |
| ! | AGCCATAAATCAAATAATAC+AGG | + | contig397end:29505-29524 | None:intergenic | 25.0% |
| ! | ATGAGAGGAATCTTAATATT+TGG | + | contig397end:29811-29830 | None:intergenic | 25.0% |
| ! | GTGAATAATCAAATGTTTGA+TGG | - | contig397end:30925-30944 | MsG0080048669.01.T01:intron | 25.0% |
| ! | TTAAGGAAAAATGAACTTAC+TGG | + | contig397end:29232-29251 | None:intergenic | 25.0% |
| ! | TTGAAACTTGGATTGATATA+TGG | + | contig397end:30571-30590 | None:intergenic | 25.0% |
| !! | ATGACAAATTCAGCATTTTT+CGG | - | contig397end:28942-28961 | MsG0080048669.01.T01:three_prime_UTR | 25.0% |
| !! | ATTAAGATTCCTCTCATTTT+GGG | - | contig397end:29814-29833 | MsG0080048669.01.T01:intron | 25.0% |
| !! | CATTCACCATATTTTATGTA+AGG | - | contig397end:31571-31590 | MsG0080048669.01.T01:CDS | 25.0% |
| !! | CTTAAGAGAGTACATAAATA+TGG | - | contig397end:31501-31520 | MsG0080048669.01.T01:CDS | 25.0% |
| !! | TAGAAATTTTGCTTGAAACT+TGG | + | contig397end:30583-30602 | None:intergenic | 25.0% |
| !! | TATTAAGATTCCTCTCATTT+TGG | - | contig397end:29813-29832 | MsG0080048669.01.T01:intron | 25.0% |
| !!! | AAGCAAAATTTCTAGTTACT+AGG | - | contig397end:30589-30608 | MsG0080048669.01.T01:intron | 25.0% |
| !!! | AGCAAAATTTCTAGTTACTA+GGG | - | contig397end:30590-30609 | MsG0080048669.01.T01:intron | 25.0% |
| !!! | ATTTTTAGGTACATGGTTAT+CGG | - | contig397end:29327-29346 | MsG0080048669.01.T01:intron | 25.0% |
| !!! | TGACATTTTAATGTAAGAAC+AGG | + | contig397end:29589-29608 | None:intergenic | 25.0% |
| !!! | TTGACTTATTTTTAGGTACA+TGG | - | contig397end:29320-29339 | MsG0080048669.01.T01:intron | 25.0% |
| AACAATCATCAGAATGAATC+GGG | + | contig397end:29438-29457 | None:intergenic | 30.0% | |
| AACTCTTTGATCTACTTCTT+TGG | - | contig397end:30060-30079 | MsG0080048669.01.T01:CDS | 30.0% | |
| AAGACTTGTGAATTCAAAAG+AGG | - | contig397end:31045-31064 | MsG0080048669.01.T01:intron | 30.0% | |
| AATAATGATGCTATCAAGAC+TGG | - | contig397end:31208-31227 | MsG0080048669.01.T01:intron | 30.0% | |
| ACGCATGGAAAAATTCTATT+GGG | - | contig397end:30429-30448 | MsG0080048669.01.T01:CDS | 30.0% | |
| AGACTTGTGAATTCAAAAGA+GGG | - | contig397end:31046-31065 | MsG0080048669.01.T01:intron | 30.0% | |
| CAACAATCATCAGAATGAAT+CGG | + | contig397end:29439-29458 | None:intergenic | 30.0% | |
| CAAGTTTCAAACTCATATCA+CGG | + | contig397end:30897-30916 | None:intergenic | 30.0% | |
| GGCAAAAATTGACTATAATG+AGG | - | contig397end:29034-29053 | MsG0080048669.01.T01:three_prime_UTR | 30.0% | |
| TCCTATGATTATATCAGTAC+CGG | - | contig397end:29200-29219 | MsG0080048669.01.T01:CDS | 30.0% | |
| TTATCTTATTGTTTGGATGC+AGG | - | contig397end:31357-31376 | MsG0080048669.01.T01:intron | 30.0% | |
| ! | TATCACCTAAAAGTTTGCTT+TGG | - | contig397end:31280-31299 | MsG0080048669.01.T01:intron | 30.0% |
| ! | TTGATCCAAAGCAAACTTTT+AGG | + | contig397end:31288-31307 | None:intergenic | 30.0% |
| !! | AAATTTCTAGTTACTAGGGT+AGG | - | contig397end:30594-30613 | MsG0080048669.01.T01:intron | 30.0% |
| !! | CTTTCCTTTTCTGATAATGT+CGG | + | contig397end:30179-30198 | None:intergenic | 30.0% |
| !!! | GTTTTATTGATGGTGTCTTA+TGG | - | contig397end:31628-31647 | MsG0080048669.01.T01:CDS | 30.0% |
| AAGAACAAGAGAATGTGAAG+AGG | - | contig397end:31137-31156 | MsG0080048669.01.T01:intron | 35.0% | |
| AATATGGACAACACAGTTGA+TGG | - | contig397end:29718-29737 | MsG0080048669.01.T01:intron | 35.0% | |
| AATCTCGATTGGATATGTTC+AGG | - | contig397end:29692-29711 | MsG0080048669.01.T01:intron | 35.0% | |
| AGAACAAGAGAATGTGAAGA+GGG | - | contig397end:31138-31157 | MsG0080048669.01.T01:intron | 35.0% | |
| AGGAATTGGATATCTGGTAT+TGG | - | contig397end:31004-31023 | MsG0080048669.01.T01:intron | 35.0% | |
| ATACACAGTCAATAACCAGA+TGG | - | contig397end:30261-30280 | MsG0080048669.01.T01:CDS | 35.0% | |
| ATCAAGACTGGAAACTTCTA+TGG | - | contig397end:31220-31239 | MsG0080048669.01.T01:intron | 35.0% | |
| ATCTTGACAATGTCATCCTT+AGG | + | contig397end:30514-30533 | None:intergenic | 35.0% | |
| ATTTCCACTTTCCAATTCTC+CGG | + | contig397end:30110-30129 | None:intergenic | 35.0% | |
| CATACACACACTATGATACT+TGG | - | contig397end:29993-30012 | MsG0080048669.01.T01:intron | 35.0% | |
| GACACTTATAGAAAGCAAGT+TGG | - | contig397end:31664-31683 | MsG0080048669.01.T01:CDS | 35.0% | |
| GACGCATGGAAAAATTCTAT+TGG | - | contig397end:30428-30447 | MsG0080048669.01.T01:CDS | 35.0% | |
| GAGTTTGTCTGGTAACTTTA+AGG | - | contig397end:29007-29026 | MsG0080048669.01.T01:three_prime_UTR | 35.0% | |
| GGATATGTTCAGGTACAATA+TGG | - | contig397end:29702-29721 | MsG0080048669.01.T01:intron | 35.0% | |
| TATGCTCCTTTAATTCGTGA+CGG | - | contig397end:30406-30425 | MsG0080048669.01.T01:CDS | 35.0% | |
| TATTTACCTGATTCCCATCT+TGG | + | contig397end:29893-29912 | None:intergenic | 35.0% | |
| TCTTCACATTCTCTTGTTCT+TGG | + | contig397end:31138-31157 | None:intergenic | 35.0% | |
| TCTTGACAATGTCATCCTTA+GGG | + | contig397end:30513-30532 | None:intergenic | 35.0% | |
| TGCATTAATCTCACCACTTT+AGG | - | contig397end:31594-31613 | MsG0080048669.01.T01:CDS | 35.0% | |
| TTCACGATTTGAATCTCGAT+TGG | - | contig397end:29681-29700 | MsG0080048669.01.T01:intron | 35.0% | |
| TTCATCAATGATCTTGATGC+AGG | - | contig397end:30211-30230 | MsG0080048669.01.T01:CDS | 35.0% | |
| ! | CGTGATATGAGTTTGAAACT+TGG | - | contig397end:30895-30914 | MsG0080048669.01.T01:intron | 35.0% |
| ! | CTCTTCTTTGTTGTACATAC+CGG | + | contig397end:30338-30357 | None:intergenic | 35.0% |
| ! | GATCATAGTTTTCTGCAGAA+GGG | + | contig397end:31431-31450 | None:intergenic | 35.0% |
| ! | TCTTCTTTGTTGTACATACC+GGG | + | contig397end:30337-30356 | None:intergenic | 35.0% |
| ! | TGAGGTATTTGTCAGCTAAT+TGG | + | contig397end:31165-31184 | None:intergenic | 35.0% |
| !! | ACCGGTACTGATATAATCAT+AGG | + | contig397end:29204-29223 | None:intergenic | 35.0% |
| !! | GCTGTTTTCATAAGCTATCA+TGG | + | contig397end:30728-30747 | None:intergenic | 35.0% |
| !! | GTCTGGTAACTTTAAGGTTT+CGG | - | contig397end:29013-29032 | MsG0080048669.01.T01:three_prime_UTR | 35.0% |
| !! | GTGTTTGTCAAGGTATTTTC+AGG | - | contig397end:30476-30495 | MsG0080048669.01.T01:CDS | 35.0% |
| !!! | AGATTTTTTTGGTGCCTTGA+GGG | - | contig397end:30958-30977 | MsG0080048669.01.T01:intron | 35.0% |
| !!! | TAGATTTTTTTGGTGCCTTG+AGG | - | contig397end:30957-30976 | MsG0080048669.01.T01:intron | 35.0% |
| ACAAGCTTGTCCATAAATGC+GGG | + | contig397end:29757-29776 | None:intergenic | 40.0% | |
| AGCTTGTCAAGAGTCATCTT+TGG | + | contig397end:31091-31110 | None:intergenic | 40.0% | |
| AGTTACCAGACAAACTCTTC+TGG | + | contig397end:29004-29023 | None:intergenic | 40.0% | |
| ATCTTTGGTTGCTCGAAAGT+TGG | + | contig397end:31076-31095 | None:intergenic | 40.0% | |
| ATGACCAACAGGATATCACA+AGG | - | contig397end:29108-29127 | MsG0080048669.01.T01:exon | 40.0% | |
| ATGACGATGAAGTCAGGAAT+TGG | - | contig397end:30990-31009 | MsG0080048669.01.T01:intron | 40.0% | |
| ATGATACTTGGCTTAGGCTT+AGG | - | contig397end:30005-30024 | MsG0080048669.01.T01:intron | 40.0% | |
| CACACTATGATACTTGGCTT+AGG | - | contig397end:29999-30018 | MsG0080048669.01.T01:intron | 40.0% | |
| CATTTCCAGTGACGATGATA+GGG | + | contig397end:30372-30391 | None:intergenic | 40.0% | |
| CTTGACAAGCTACTAGAGTA+TGG | - | contig397end:31100-31119 | MsG0080048669.01.T01:intron | 40.0% | |
| CTTTGCCTAATCAACTTTGC+AGG | + | contig397end:30142-30161 | None:intergenic | 40.0% | |
| GAAGTCAGGAATTGGATATC+TGG | - | contig397end:30998-31017 | MsG0080048669.01.T01:intron | 40.0% | |
| GAATTGGAAAGTGGAAATGC+AGG | - | contig397end:30112-30131 | MsG0080048669.01.T01:CDS | 40.0% | |
| GACAAGCTTGTCCATAAATG+CGG | + | contig397end:29758-29777 | None:intergenic | 40.0% | |
| GATCAACAAATATGTCGCGT+CGG | - | contig397end:31302-31321 | MsG0080048669.01.T01:intron | 40.0% | |
| GTATATTGCACCCGCATTTA+TGG | - | contig397end:29744-29763 | MsG0080048669.01.T01:intron | 40.0% | |
| GTTGTCAGCAATGTTCATGA+GGG | + | contig397end:30296-30315 | None:intergenic | 40.0% | |
| TAAATGCGGGTGCAATATAC+AGG | + | contig397end:29744-29763 | None:intergenic | 40.0% | |
| TATTGTTTGGATGCAGGACA+AGG | - | contig397end:31363-31382 | MsG0080048669.01.T01:intron | 40.0% | |
| TCATTTCCAGTGACGATGAT+AGG | + | contig397end:30373-30392 | None:intergenic | 40.0% | |
| TGACCAACAGGATATCACAA+GGG | - | contig397end:29109-29128 | MsG0080048669.01.T01:exon | 40.0% | |
| ! | CTGCAAAGTTGATTAGGCAA+AGG | - | contig397end:30140-30159 | MsG0080048669.01.T01:CDS | 40.0% |
| ! | GGATCATAGTTTTCTGCAGA+AGG | + | contig397end:31432-31451 | None:intergenic | 40.0% |
| ! | TCCTCTCATTTTGGGCATTT+GGG | - | contig397end:29822-29841 | MsG0080048669.01.T01:intron | 40.0% |
| ! | TTCCTCTCATTTTGGGCATT+TGG | - | contig397end:29821-29840 | MsG0080048669.01.T01:intron | 40.0% |
| !! | CAAGGTATTTTCAGGACAGA+TGG | - | contig397end:30484-30503 | MsG0080048669.01.T01:CDS | 40.0% |
| !! | GATAGAGTTGGTGTTTGTCA+AGG | - | contig397end:30466-30485 | MsG0080048669.01.T01:CDS | 40.0% |
| !! | TCGCAGAACTAGCTTTCTTA+AGG | + | contig397end:28974-28993 | None:intergenic | 40.0% |
| AAGATTGTCGACACATTCCC+TGG | - | contig397end:30529-30548 | MsG0080048669.01.T01:intron | 45.0% | |
| AATGATCTTGATGCAGGAGC+TGG | - | contig397end:30217-30236 | MsG0080048669.01.T01:CDS | 45.0% | |
| ACAGGATATCACAAGGGGAA+AGG | - | contig397end:29115-29134 | MsG0080048669.01.T01:exon | 45.0% | |
| ACATTCCCTGGACAGTCAAT+CGG | - | contig397end:30541-30560 | MsG0080048669.01.T01:intron | 45.0% | |
| AGCTGACAAATACCTCAGTG+AGG | - | contig397end:31168-31187 | MsG0080048669.01.T01:intron | 45.0% | |
| ATGAACTTACTGGCGAAGAC+CGG | + | contig397end:29222-29241 | None:intergenic | 45.0% | |
| ATGCGTCCGTCACGAATTAA+AGG | + | contig397end:30415-30434 | None:intergenic | 45.0% | |
| CAGGATATCACAAGGGGAAA+GGG | - | contig397end:29116-29135 | MsG0080048669.01.T01:exon | 45.0% | |
| CAGTGTCTTTCAAGCTCCAA+CGG | - | contig397end:29148-29167 | MsG0080048669.01.T01:CDS | 45.0% | |
| CATACCGGGAAGTTGAACAT+TGG | + | contig397end:30323-30342 | None:intergenic | 45.0% | |
| CCAACTCTATCATCACGAGT+AGG | + | contig397end:30457-30476 | None:intergenic | 45.0% | |
| CCTACCAATGTTCAACTTCC+CGG | - | contig397end:30316-30335 | MsG0080048669.01.T01:CDS | 45.0% | |
| CCTACTCGTGATGATAGAGT+TGG | - | contig397end:30454-30473 | MsG0080048669.01.T01:CDS | 45.0% | |
| CGGGAAGTTGAACATTGGTA+GGG | + | contig397end:30318-30337 | None:intergenic | 45.0% | |
| CGTCGGTCTTGACAATAACT+TGG | - | contig397end:31319-31338 | MsG0080048669.01.T01:intron | 45.0% | |
| GACCAACAGGATATCACAAG+GGG | - | contig397end:29110-29129 | MsG0080048669.01.T01:exon | 45.0% | |
| GAGCTTGTCTTTGCCAAGAT+GGG | - | contig397end:29877-29896 | MsG0080048669.01.T01:intron | 45.0% | |
| GAGTGTATGACGATGAAGTC+AGG | - | contig397end:30984-31003 | MsG0080048669.01.T01:intron | 45.0% | |
| GATATCCTGTTGGTCATCTG+AGG | + | contig397end:29105-29124 | None:intergenic | 45.0% | |
| GCGTCCGACATTATCAGAAA+AGG | - | contig397end:30172-30191 | MsG0080048669.01.T01:CDS | 45.0% | |
| GGTTGTCAGCAATGTTCATG+AGG | + | contig397end:30297-30316 | None:intergenic | 45.0% | |
| TATCACAAGGGGAAAGGGAA+AGG | - | contig397end:29121-29140 | MsG0080048669.01.T01:CDS | 45.0% | |
| TCTTTGCCAAGATGGGAATC+AGG | - | contig397end:29884-29903 | MsG0080048669.01.T01:intron | 45.0% | |
| TGAGCTTGTCTTTGCCAAGA+TGG | - | contig397end:29876-29895 | MsG0080048669.01.T01:intron | 45.0% | |
| TGAGGAAAAGCAGACCTCAA+AGG | - | contig397end:29052-29071 | MsG0080048669.01.T01:three_prime_UTR | 45.0% | |
| TGAGGGTTGCATTTACCATC+TGG | + | contig397end:30279-30298 | None:intergenic | 45.0% | |
| TTCCCCTTGTGATATCCTGT+TGG | + | contig397end:29115-29134 | None:intergenic | 45.0% | |
| TTTGGTTGCTCGAAAGTTGG+AGG | + | contig397end:31073-31092 | None:intergenic | 45.0% | |
| ! | ATATTGAACGGCTCTAGCAG+TGG | - | contig397end:28912-28931 | MsG0080048669.01.T01:three_prime_UTR | 45.0% |
| ! | CCTCTCATTTTGGGCATTTG+GGG | - | contig397end:29823-29842 | MsG0080048669.01.T01:intron | 45.0% |
| ! | GAGAGCCTGCAAAGTTGATT+AGG | - | contig397end:30134-30153 | MsG0080048669.01.T01:CDS | 45.0% |
| !! | TTGGATATCTGGTATTGGCG+TGG | - | contig397end:31009-31028 | MsG0080048669.01.T01:intron | 45.0% |
| !! | TTTAATTCGTGACGGACGCA+TGG | - | contig397end:30414-30433 | MsG0080048669.01.T01:CDS | 45.0% |
| ACCAGACAAACTCTTCTGGC+TGG | + | contig397end:29000-29019 | None:intergenic | 50.0% | |
| AGCAGACCTCAAAGGACAGA+TGG | - | contig397end:29060-29079 | MsG0080048669.01.T01:three_prime_UTR | 50.0% | |
| AGCCCTATAATGATGAGCGC+CGG | - | contig397end:30088-30107 | MsG0080048669.01.T01:CDS | 50.0% | |
| ATTTGGGGAGGCAAAGGTCA+AGG | - | contig397end:29838-29857 | MsG0080048669.01.T01:intron | 50.0% | |
| CCCCAAATGCCCAAAATGAG+AGG | + | contig397end:29826-29845 | None:intergenic | 50.0% | |
| CCGGGAAGTTGAACATTGGT+AGG | + | contig397end:30319-30338 | None:intergenic | 50.0% | |
| CTCCGGCGCTCATCATTATA+GGG | + | contig397end:30093-30112 | None:intergenic | 50.0% | |
| GATGCAGGAGCTGGTAGAAT+GGG | - | contig397end:30226-30245 | MsG0080048669.01.T01:CDS | 50.0% | |
| GCAACTTCCATCGTCACTTC+TGG | + | contig397end:31460-31479 | None:intergenic | 50.0% | |
| GCAGACCTCAAAGGACAGAT+GGG | - | contig397end:29061-29080 | MsG0080048669.01.T01:three_prime_UTR | 50.0% | |
| GTCATACACTCTAGCCCTCA+AGG | + | contig397end:30975-30994 | None:intergenic | 50.0% | |
| GTTCCTTTACCTGTCCCAGA+AGG | - | contig397end:31396-31415 | MsG0080048669.01.T01:CDS | 50.0% | |
| TAGTGAGTTCCAGCATCCGT+TGG | + | contig397end:29167-29186 | None:intergenic | 50.0% | |
| TCCAGCCAGAAGAGTTTGTC+TGG | - | contig397end:28996-29015 | MsG0080048669.01.T01:three_prime_UTR | 50.0% | |
| TCTCCGGCGCTCATCATTAT+AGG | + | contig397end:30094-30113 | None:intergenic | 50.0% | |
| TGACACCTCAGATGACCAAC+AGG | - | contig397end:29097-29116 | MsG0080048669.01.T01:three_prime_UTR | 50.0% | |
| TGATGCAGGAGCTGGTAGAA+TGG | - | contig397end:30225-30244 | MsG0080048669.01.T01:CDS | 50.0% | |
| TTTCAAGCTCCAACGGATGC+TGG | - | contig397end:29155-29174 | MsG0080048669.01.T01:CDS | 50.0% | |
| ! | CTCATTTTGGGCATTTGGGG+AGG | - | contig397end:29826-29845 | MsG0080048669.01.T01:intron | 50.0% |
| ! | GCTTACCGATTGACTGTCCA+GGG | + | contig397end:30549-30568 | None:intergenic | 50.0% |
| ! | TGATAATGTCGGACGCCTCA+CGG | + | contig397end:30168-30187 | None:intergenic | 50.0% |
| !! | AATGATGAGCGCCGGAGAAT+TGG | - | contig397end:30096-30115 | MsG0080048669.01.T01:CDS | 50.0% |
| !! | CAACCTTCTGGGACAGGTAA+AGG | + | contig397end:31402-31421 | None:intergenic | 50.0% |
| !! | GATTAGGCAAAGGTACCGTG+AGG | - | contig397end:30150-30169 | MsG0080048669.01.T01:CDS | 50.0% |
| !! | GGTATTGGCGTGGAGAGTAT+TGG | - | contig397end:31019-31038 | MsG0080048669.01.T01:intron | 50.0% |
| AAGGGTCAGCGCAACCTTCT+GGG | + | contig397end:31413-31432 | None:intergenic | 55.0% | |
| ACCTCAAAGGACAGATGGGC+TGG | - | contig397end:29065-29084 | MsG0080048669.01.T01:three_prime_UTR | 55.0% | |
| AGTGACGATGATAGGGACGC+GGG | + | contig397end:30365-30384 | None:intergenic | 55.0% | |
| CACAAGGGGAAAGGGAAAGG+TGG | - | contig397end:29124-29143 | MsG0080048669.01.T01:CDS | 55.0% | |
| CAGGACAGATGGTGTCCCTA+AGG | - | contig397end:30495-30514 | MsG0080048669.01.T01:CDS | 55.0% | |
| CAGTGACGATGATAGGGACG+CGG | + | contig397end:30366-30385 | None:intergenic | 55.0% | |
| CGCGCGTGTGTGTAACACAA+TGG | + | contig397end:29967-29986 | None:intergenic | 55.0% | |
| TACCTCAGTGAGGCAGCTCT+TGG | - | contig397end:31178-31197 | MsG0080048669.01.T01:intron | 55.0% | |
| TCCAGCCCATCTGTCCTTTG+AGG | + | contig397end:29069-29088 | None:intergenic | 55.0% | |
| TTGGGCATTTGGGGAGGCAA+AGG | - | contig397end:29832-29851 | MsG0080048669.01.T01:intron | 55.0% | |
| ! | AGCGCCGGAGAATTGGAAAG+TGG | - | contig397end:30103-30122 | MsG0080048669.01.T01:CDS | 55.0% |
| ! | CCATCGTCACTTCTGGCTGT+CGG | + | contig397end:31453-31472 | None:intergenic | 55.0% |
| ! | GGCTTACCGATTGACTGTCC+AGG | + | contig397end:30550-30569 | None:intergenic | 55.0% |
| CCGACAGCCAGAAGTGACGA+TGG | - | contig397end:31450-31469 | MsG0080048669.01.T01:CDS | 60.0% | |
| CGCGTCCCTATCATCGTCAC+TGG | - | contig397end:30364-30383 | MsG0080048669.01.T01:CDS | 60.0% | |
| CTCCAAGAGCTGCCTCACTG+AGG | + | contig397end:31183-31202 | None:intergenic | 60.0% | |
| GAAGGGTCAGCGCAACCTTC+TGG | + | contig397end:31414-31433 | None:intergenic | 60.0% | |
| GCAGGAGCTGGTAGAATGGG+TGG | - | contig397end:30229-30248 | MsG0080048669.01.T01:CDS | 60.0% | |
| !! | TCAGCGCAACCTTCTGGGAC+AGG | + | contig397end:31408-31427 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| contig397end | gene | 28903 | 31711 | 28903 | ID=MsG0080048669.01;Name=MsG0080048669.01 |
| contig397end | mRNA | 28903 | 31711 | 28903 | ID=MsG0080048669.01.T01;Parent=MsG0080048669.01;Name=MsG0080048669.01.T01;_AED=0.29;_eAED=0.29;_QI=0|1|0.8|1|1|1|5|217|463 |
| contig397end | exon | 28903 | 29235 | 28903 | ID=MsG0080048669.01.T01:exon:10181;Parent=MsG0080048669.01.T01 |
| contig397end | exon | 29373 | 29654 | 29373 | ID=MsG0080048669.01.T01:exon:10180;Parent=MsG0080048669.01.T01 |
| contig397end | exon | 30052 | 30524 | 30052 | ID=MsG0080048669.01.T01:exon:10179;Parent=MsG0080048669.01.T01 |
| contig397end | exon | 30709 | 30900 | 30709 | ID=MsG0080048669.01.T01:exon:10178;Parent=MsG0080048669.01.T01 |
| contig397end | exon | 31383 | 31711 | 31383 | ID=MsG0080048669.01.T01:exon:10177;Parent=MsG0080048669.01.T01 |
| contig397end | CDS | 31383 | 31711 | 31383 | ID=MsG0080048669.01.T01:cds;Parent=MsG0080048669.01.T01 |
| contig397end | CDS | 30709 | 30900 | 30709 | ID=MsG0080048669.01.T01:cds;Parent=MsG0080048669.01.T01 |
| contig397end | CDS | 30052 | 30524 | 30052 | ID=MsG0080048669.01.T01:cds;Parent=MsG0080048669.01.T01 |
| contig397end | CDS | 29373 | 29654 | 29373 | ID=MsG0080048669.01.T01:cds;Parent=MsG0080048669.01.T01 |
| contig397end | CDS | 29120 | 29235 | 29120 | ID=MsG0080048669.01.T01:cds;Parent=MsG0080048669.01.T01 |
| contig397end | three_prime_UTR | 28903 | 29119 | 28903 | ID=MsG0080048669.01.T01:three_prime_utr;Parent=MsG0080048669.01.T01 |
| Gene Sequence |
| Protein sequence |
