AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0780035994.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035994.01.T01 MTR_7g006570 87.640 267 6 1 1 267 1 240 1.45e-168 467
MsG0780035994.01.T01 MTR_7g006570 83.645 214 8 1 1 214 1 187 1.03e-123 352
MsG0780035994.01.T01 MTR_1g061080 32.374 139 81 3 131 262 81 213 8.41e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0780035994.01.T01 AT5G13410 65.546 238 51 2 34 267 46 256 3.84e-107 312
MsG0780035994.01.T01 AT5G13410 57.838 185 47 2 34 214 46 203 4.62e-66 206
MsG0780035994.01.T01 AT5G13410 55.030 169 43 3 34 196 46 187 2.21e-52 171
MsG0780035994.01.T01 AT4G19830 33.566 143 74 4 131 262 90 222 3.13e-12 65.5

Find 68 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTCTCCTTTCTTTGGTTT+TGG 0.098567 7:-1061703 None:intergenic
AGTACCAGAGATTGAGATTT+AGG 0.204966 7:-1059855 None:intergenic
TCTTCCATTGCTGTCATTGC+TGG 0.261109 7:+1060235 MsG0780035994.01.T01:CDS
ACTACTGTCTCTCCTTTCTT+TGG 0.267395 7:-1061709 None:intergenic
GAAGAATTTGACAAATCATT+TGG 0.298092 7:-1063635 None:intergenic
GATTCGGTTTCTATGTAGTC+TGG 0.299781 7:-1061562 None:intergenic
ACCGAGAATGTTGTAGGTCT+TGG 0.306682 7:-1063447 None:intergenic
CTGTTGCAGGCATGTCTCTC+GGG 0.313157 7:+1062902 MsG0780035994.01.T01:CDS
GGCTACACCATAGGTTATTA+TGG 0.314573 7:+1062040 MsG0780035994.01.T01:CDS
AGAAACTAACCTGAATGTTT+TGG 0.331460 7:-1063679 None:intergenic
CAAGTTCCATTCAGGTAGAT+TGG 0.341541 7:+1062014 MsG0780035994.01.T01:intron
CGAATCTGGACTCCAGTATA+AGG 0.349702 7:+1061579 MsG0780035994.01.T01:CDS
GCGCTTAGAGGGAAGGATTA+TGG 0.359617 7:+1061520 MsG0780035994.01.T01:CDS
GAAGAATCGGAGAGATTATC+AGG 0.361485 7:-1059959 None:intergenic
CATACAGTGCCTGCGCTTAG+AGG 0.369660 7:+1061508 MsG0780035994.01.T01:intron
CCTGAGAGTGATTATAATAA+AGG 0.373753 7:+1063420 MsG0780035994.01.T01:CDS
CTCTCAGGATATCCAAGTTC+TGG 0.374321 7:-1063405 None:intergenic
GACTACATAGAAACCGAATC+TGG 0.408710 7:+1061565 MsG0780035994.01.T01:CDS
TAGTAGTATTAATAAATTGC+AGG 0.414913 7:+1061660 MsG0780035994.01.T01:CDS
GCTGTTGCAGGCATGTCTCT+CGG 0.418797 7:+1062901 MsG0780035994.01.T01:CDS
CAGGACTTGCGACCCGGAAA+TGG 0.420506 7:+1061679 MsG0780035994.01.T01:CDS
CGTGCTGCATCACCTTATAC+TGG 0.421611 7:-1061591 None:intergenic
AAGTTCCATTCAGGTAGATT+GGG 0.421771 7:+1062015 MsG0780035994.01.T01:intron
CCGAGAATGTTGTAGGTCTT+GGG 0.424007 7:-1063446 None:intergenic
CTCTCCGATTCTTCTTTCTC+CGG 0.431412 7:+1059968 MsG0780035994.01.T01:CDS
ATATCACCACCAAAACATTC+AGG 0.437986 7:+1063670 MsG0780035994.01.T01:CDS
ACTCTTACCGAGAATGTTGT+AGG 0.441297 7:-1063453 None:intergenic
CTTATACTGGAGTCCAGATT+CGG 0.447520 7:-1061578 None:intergenic
CCCAAGACCTACAACATTCT+CGG 0.450933 7:+1063446 MsG0780035994.01.T01:CDS
AGAAAGAGAAGCAATGGAAA+AGG 0.453395 7:-1059829 None:intergenic
TTTACAGGGCCAACGAGCCT+TGG 0.477434 7:+1063541 MsG0780035994.01.T01:intron
AGGTAGAGAAAGAGAAGCAA+TGG 0.477899 7:-1059835 None:intergenic
CTGTACTTTGTTGTGTGGAA+TGG 0.483643 7:-1059774 None:intergenic
CCTTTATTATAATCACTCTC+AGG 0.484019 7:-1063420 None:intergenic
GTCGTTTGAACGGAGAAAGA+TGG 0.491223 7:+1060207 MsG0780035994.01.T01:CDS
TCTACCTAAATCTCAATCTC+TGG 0.493829 7:+1059851 MsG0780035994.01.T01:CDS
CAGTACAGAAGTTACAGTTA+TGG 0.509987 7:+1059794 MsG0780035994.01.T01:exon
AACAAAAGGCGGTTCCTTCG+AGG 0.510702 7:+1062087 MsG0780035994.01.T01:CDS
ATAATTGTACCACCAGAACT+TGG 0.512580 7:+1063393 MsG0780035994.01.T01:CDS
CTGACCGGAGAAAGAAGAAT+CGG 0.524615 7:-1059972 None:intergenic
TGTTGCAGGCATGTCTCTCG+GGG 0.531908 7:+1062903 MsG0780035994.01.T01:CDS
GCAACAGCCTCTTCAAAAGC+TGG 0.532405 7:-1062886 None:intergenic
ATTCGGTTTCTATGTAGTCT+GGG 0.535406 7:-1061561 None:intergenic
CTGTACTGTACTTTGTTGTG+TGG 0.542160 7:-1059779 None:intergenic
GAAGCCCGGAATAAAACAAA+AGG 0.543558 7:+1062073 MsG0780035994.01.T01:CDS
TATGCGACCATAATAACCTA+TGG 0.545221 7:-1062047 None:intergenic
AAATTGCAGGACTTGCGACC+CGG 0.549601 7:+1061673 MsG0780035994.01.T01:CDS
GAGTCTTGTCTATCAACCCT+TGG 0.550697 7:-1063580 None:intergenic
ATGGTCGCATATTTGAAGCC+CGG 0.550903 7:+1062059 MsG0780035994.01.T01:CDS
AATGGCCCAAAACCAAAGAA+AGG 0.553989 7:+1061697 MsG0780035994.01.T01:CDS
GATTGGGATGGCTACACCAT+AGG 0.554754 7:+1062031 MsG0780035994.01.T01:CDS
ATACAGTGCCTGCGCTTAGA+GGG 0.556567 7:+1061509 MsG0780035994.01.T01:intron
GTTCCTTAGCACAAAATCCA+AGG 0.568528 7:-1063558 None:intergenic
TAATCCTTCCCTCTAAGCGC+AGG 0.569928 7:-1061517 None:intergenic
AGTGCCTGCGCTTAGAGGGA+AGG 0.581188 7:+1061513 MsG0780035994.01.T01:intron
TTTCTCCGTTCAAACGACGT+TGG 0.585440 7:-1060202 None:intergenic
TCCATTCAGGTAGATTGGGA+TGG 0.591083 7:+1062019 MsG0780035994.01.T01:intron
AGTTCCAGCAATGACAGCAA+TGG 0.596327 7:-1060239 None:intergenic
GGTAAAAGCAACGGTAAGAG+TGG 0.605043 7:+1060166 MsG0780035994.01.T01:intron
GCACAAAATCCAAGGCTCGT+TGG 0.605057 7:-1063550 None:intergenic
AAATATGCAGGGTGATGACA+AGG 0.621012 7:+1062193 MsG0780035994.01.T01:intron
GAGAGTGATTATAATAAAGG+TGG 0.627466 7:+1063423 MsG0780035994.01.T01:CDS
TCAGGATATCCAAGTTCTGG+TGG 0.630805 7:-1063402 None:intergenic
CAAAACATTCAATACCTCGA+AGG 0.640541 7:-1062101 None:intergenic
GCCCGGAATAAAACAAAAGG+CGG 0.648713 7:+1062076 MsG0780035994.01.T01:CDS
AAAGAAAGGAGAGACAGTAG+TGG 0.673908 7:+1061711 MsG0780035994.01.T01:CDS
GTTGCAGGCATGTCTCTCGG+GGG 0.694566 7:+1062904 MsG0780035994.01.T01:CDS
ATTCAAAGTAGGATCGCACG+AGG 0.729797 7:+1062226 MsG0780035994.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATCCTTAAAAATTTAATA+TGG + Chr7:1063273-1063292 MsG0780035994.01.T01:intron 10.0%
!! AAATTATAAGTGATATAACA+TGG + Chr7:1062575-1062594 MsG0780035994.01.T01:intron 15.0%
!! AAGCTATTATTAATTGAAAT+TGG - Chr7:1061201-1061220 None:intergenic 15.0%
!! ATGATAAATATAGTTAAGTA+TGG - Chr7:1059927-1059946 None:intergenic 15.0%
!! ATTTGAAAAACAACAAAATA+AGG - Chr7:1062177-1062196 None:intergenic 15.0%
!! CAGTATAATAAAATAAATTC+AGG - Chr7:1063073-1063092 None:intergenic 15.0%
!!! GTTAATTTATTTTATCTAGA+GGG + Chr7:1062455-1062474 MsG0780035994.01.T01:intron 15.0%
!!! TCAACCATATTAAATTTTTA+AGG - Chr7:1063280-1063299 None:intergenic 15.0%
!!! TGTTAATTTATTTTATCTAG+AGG + Chr7:1062454-1062473 MsG0780035994.01.T01:intron 15.0%
!! AACGACAAATAATATAATGA+AGG - Chr7:1060907-1060926 None:intergenic 20.0%
!! AATCAACTTAACTTATGTAT+AGG + Chr7:1060384-1060403 MsG0780035994.01.T01:intron 20.0%
!! AATTAAAATTGTCAATTGCT+GGG + Chr7:1063154-1063173 MsG0780035994.01.T01:intron 20.0%
!! ACGACAAATAATATAATGAA+GGG - Chr7:1060906-1060925 None:intergenic 20.0%
!! ATAAATTCTTACTCTTGATT+TGG + Chr7:1063101-1063120 MsG0780035994.01.T01:intron 20.0%
!! ATACTCGTTCTAATTTAAAT+AGG - Chr7:1061231-1061250 None:intergenic 20.0%
!! CATTATATTGAAATCTTTGT+AGG - Chr7:1061471-1061490 None:intergenic 20.0%
!! CTATATTTATCATTTCTTTC+AGG + Chr7:1059934-1059953 MsG0780035994.01.T01:intron 20.0%
!! TAAATTCTTACTCTTGATTT+GGG + Chr7:1063102-1063121 MsG0780035994.01.T01:intron 20.0%
!! TAATTAAAATTGTCAATTGC+TGG + Chr7:1063153-1063172 MsG0780035994.01.T01:intron 20.0%
!! TACTCGTTCTAATTTAAATA+GGG - Chr7:1061230-1061249 None:intergenic 20.0%
!! TAGTAGTATTAATAAATTGC+AGG + Chr7:1061660-1061679 MsG0780035994.01.T01:CDS 20.0%
!! TATACAATACAACAATATCA+TGG - Chr7:1060883-1060902 None:intergenic 20.0%
!! TTATAATTTCGTTATAGAAC+AGG - Chr7:1062564-1062583 None:intergenic 20.0%
!! TTTAATATGGTTGAAAAGTA+AGG + Chr7:1063286-1063305 MsG0780035994.01.T01:intron 20.0%
!!! AATTTTAATTACGGAAATTC+AGG - Chr7:1063144-1063163 None:intergenic 20.0%
!!! ATTTTAATTACGGAAATTCA+GGG - Chr7:1063143-1063162 None:intergenic 20.0%
!!! CTATTGATTTTATAGTCAAT+TGG + Chr7:1061755-1061774 MsG0780035994.01.T01:intron 20.0%
!!! GCAATTGACAATTTTAATTA+CGG - Chr7:1063153-1063172 None:intergenic 20.0%
!!! GTATTTGTTTTATCATAAAC+TGG + Chr7:1061400-1061419 MsG0780035994.01.T01:intron 20.0%
!!! TCATTAAGCTAAGTTTTTTT+AGG - Chr7:1060748-1060767 None:intergenic 20.0%
!!! TGTTTTCATAAACTATCTTT+GGG + Chr7:1060461-1060480 MsG0780035994.01.T01:intron 20.0%
!!! TTATTTCTATAAACTCTCTT+GGG + Chr7:1060719-1060738 MsG0780035994.01.T01:intron 20.0%
! AAAGATCCTATTGAAATTGA+AGG - Chr7:1062286-1062305 None:intergenic 25.0%
! AAATATGCTATTAACTTTGC+TGG - Chr7:1060096-1060115 None:intergenic 25.0%
! AATTTGAGTGCTTAATATGT+TGG - Chr7:1062790-1062809 None:intergenic 25.0%
! ACTCGTTCTAATTTAAATAG+GGG - Chr7:1061229-1061248 None:intergenic 25.0%
! ACTTATTTGAGCTTATGTAT+TGG + Chr7:1060623-1060642 MsG0780035994.01.T01:intron 25.0%
! AGAAACTGTAATTCAGTAAA+TGG - Chr7:1063012-1063031 None:intergenic 25.0%
! AGAGTAAGAATTTATAGAAG+TGG - Chr7:1063096-1063115 None:intergenic 25.0%
! ATAGTTCCTTCAATTTCAAT+AGG + Chr7:1062277-1062296 MsG0780035994.01.T01:intron 25.0%
! ATATAAAACTGAACCACAAA+GGG - Chr7:1062485-1062504 None:intergenic 25.0%
! ATATTAATCATTACATGACG+AGG - Chr7:1062259-1062278 None:intergenic 25.0%
! ATCAATTCAAACTTTGGATT+TGG + Chr7:1063032-1063051 MsG0780035994.01.T01:intron 25.0%
! ATGTACTATAAAGAGATTGA+TGG + Chr7:1063328-1063347 MsG0780035994.01.T01:intron 25.0%
! ATTTCATTAATGTCGAGTTT+GGG - Chr7:1060045-1060064 None:intergenic 25.0%
! GAAGAATTTGACAAATCATT+TGG - Chr7:1063638-1063657 None:intergenic 25.0%
! GTTTCTATCAATTCAAACTT+TGG + Chr7:1063026-1063045 MsG0780035994.01.T01:intron 25.0%
! TATATAAAACTGAACCACAA+AGG - Chr7:1062486-1062505 None:intergenic 25.0%
! TATTAGTTCACTAAACTTGT+TGG + Chr7:1062758-1062777 MsG0780035994.01.T01:intron 25.0%
! TCAATTCAAACTTTGGATTT+GGG + Chr7:1063033-1063052 MsG0780035994.01.T01:intron 25.0%
! TCCATTATACTAAACAATGT+AGG + Chr7:1060973-1060992 MsG0780035994.01.T01:intron 25.0%
! TCCTACATTGTTTAGTATAA+TGG - Chr7:1060977-1060996 None:intergenic 25.0%
!! AAATTCTTACTCTTGATTTG+GGG + Chr7:1063103-1063122 MsG0780035994.01.T01:intron 25.0%
!! ATTAAGTTGTTTATCCAAAC+AGG + Chr7:1060856-1060875 MsG0780035994.01.T01:intron 25.0%
!! ATTAGTTCACTAAACTTGTT+GGG + Chr7:1062759-1062778 MsG0780035994.01.T01:intron 25.0%
!! CTGTTTTCATAAACTATCTT+TGG + Chr7:1060460-1060479 MsG0780035994.01.T01:intron 25.0%
!! TTCAATAGGATCTTTTCTAT+AGG + Chr7:1062291-1062310 MsG0780035994.01.T01:intron 25.0%
!!! CTTATTTCTATAAACTCTCT+TGG + Chr7:1060718-1060737 MsG0780035994.01.T01:intron 25.0%
!!! CTTTTTCTTATTTTACTACG+TGG - Chr7:1061445-1061464 None:intergenic 25.0%
!!! GACTTTTTCAAATTCAAAGT+AGG + Chr7:1062215-1062234 MsG0780035994.01.T01:CDS 25.0%
!!! TAATATCTAACCGTTTTTTC+AGG + Chr7:1060145-1060164 MsG0780035994.01.T01:intron 25.0%
!!! TCTTTGAAATGAGTTTTGAT+GGG + Chr7:1061903-1061922 MsG0780035994.01.T01:intron 25.0%
!!! TGTTGTTTTTCAAATATGCA+GGG + Chr7:1062182-1062201 MsG0780035994.01.T01:intron 25.0%
!!! TTCTTTGAAATGAGTTTTGA+TGG + Chr7:1061902-1061921 MsG0780035994.01.T01:intron 25.0%
!!! TTGTTGTTTTTCAAATATGC+AGG + Chr7:1062181-1062200 MsG0780035994.01.T01:intron 25.0%
AAATAAGGATAAGTCCTACT+TGG + Chr7:1062408-1062427 MsG0780035994.01.T01:intron 30.0%
AACATCAACAACCGAAAATT+TGG + Chr7:1061069-1061088 MsG0780035994.01.T01:intron 30.0%
AAGTAAGGCAAATGTATGTT+TGG + Chr7:1063301-1063320 MsG0780035994.01.T01:intron 30.0%
AAGTAATGTTGAATGCAGTA+GGG + Chr7:1062383-1062402 MsG0780035994.01.T01:intron 30.0%
AATTCAGTAAATGGCATGAA+AGG - Chr7:1063003-1063022 None:intergenic 30.0%
AGAGCGCAAAAGAAAAATTT+AGG - Chr7:1061856-1061875 None:intergenic 30.0%
AGTAAGGCAAATGTATGTTT+GGG + Chr7:1063302-1063321 MsG0780035994.01.T01:intron 30.0%
ATATTAAGAAGTTCCGAAGA+AGG + Chr7:1061249-1061268 MsG0780035994.01.T01:intron 30.0%
ATGTTCAGAAATAATTCCCT+AGG - Chr7:1061949-1061968 None:intergenic 30.0%
ATTTGACAACTTTACTCCTA+GGG + Chr7:1061930-1061949 MsG0780035994.01.T01:intron 30.0%
CATTTCATTAATGTCGAGTT+TGG - Chr7:1060046-1060065 None:intergenic 30.0%
CCTGAGAGTGATTATAATAA+AGG + Chr7:1063420-1063439 MsG0780035994.01.T01:CDS 30.0%
CCTTTATTATAATCACTCTC+AGG - Chr7:1063423-1063442 None:intergenic 30.0%
GACATAGTTCAAATAACCAA+AGG + Chr7:1061161-1061180 MsG0780035994.01.T01:intron 30.0%
GAGAGTGATTATAATAAAGG+TGG + Chr7:1063423-1063442 MsG0780035994.01.T01:CDS 30.0%
TAGTTCAAATAACCAAAGGA+AGG + Chr7:1061165-1061184 MsG0780035994.01.T01:intron 30.0%
TCAAATAAGCCAAATCAAAG+AGG + Chr7:1060585-1060604 MsG0780035994.01.T01:intron 30.0%
! ACTTTTTGTAAAGGAGGAAT+TGG + Chr7:1060259-1060278 MsG0780035994.01.T01:CDS 30.0%
! AGAAACTAACCTGAATGTTT+TGG - Chr7:1063682-1063701 None:intergenic 30.0%
! ATTGCTGGAACTTTTTGTAA+AGG + Chr7:1060250-1060269 MsG0780035994.01.T01:CDS 30.0%
! CAATGCGAATATGTTTTACA+GGG + Chr7:1063527-1063546 MsG0780035994.01.T01:intron 30.0%
! TTTTCTATAGGTCTTGATGT+CGG + Chr7:1062303-1062322 MsG0780035994.01.T01:intron 30.0%
!!! CAAATTATGCCCTTATTTTC+TGG + Chr7:1062804-1062823 MsG0780035994.01.T01:intron 30.0%
!!! GTTGCTTTTACCTGAAAAAA+CGG - Chr7:1060158-1060177 None:intergenic 30.0%
!!! GTTTTTTCAGGTAAAAGCAA+CGG + Chr7:1060157-1060176 MsG0780035994.01.T01:intron 30.0%
!!! TAACATGGTTTTTTTGAGTG+AGG + Chr7:1062590-1062609 MsG0780035994.01.T01:intron 30.0%
AAACAAGCTCCTCTTTGATT+TGG - Chr7:1060597-1060616 None:intergenic 35.0%
AACAATATCATGGTCCTGTT+TGG - Chr7:1060873-1060892 None:intergenic 35.0%
AACGTATGTCTATGAGGTAT+CGG + Chr7:1061103-1061122 MsG0780035994.01.T01:intron 35.0%
AAGTCCTACTTGGTTATACT+AGG + Chr7:1062418-1062437 MsG0780035994.01.T01:intron 35.0%
AAGTTCCATTCAGGTAGATT+GGG + Chr7:1062015-1062034 MsG0780035994.01.T01:intron 35.0%
AATGAAAGAAGAATCCTGAC+CGG - Chr7:1059990-1060009 None:intergenic 35.0%
ACTATGTTTATCAGTGATGC+AGG + Chr7:1063370-1063389 MsG0780035994.01.T01:intron 35.0%
AGAAAGAGAAGCAATGGAAA+AGG - Chr7:1059832-1059851 None:intergenic 35.0%
AGTACCAGAGATTGAGATTT+AGG - Chr7:1059858-1059877 None:intergenic 35.0%
AGTTTAGTCCTAATCCCAAA+GGG - Chr7:1062634-1062653 None:intergenic 35.0%
ATAAGCACTTTGCAATGGTT+TGG + Chr7:1060647-1060666 MsG0780035994.01.T01:intron 35.0%
ATAATTGTACCACCAGAACT+TGG + Chr7:1063393-1063412 MsG0780035994.01.T01:CDS 35.0%
ATATAGCTAACTTCACCTAG+CGG - Chr7:1063234-1063253 None:intergenic 35.0%
ATATCACCACCAAAACATTC+AGG + Chr7:1063670-1063689 MsG0780035994.01.T01:CDS 35.0%
ATCTACATAGCAGACATTCT+AGG + Chr7:1061879-1061898 MsG0780035994.01.T01:intron 35.0%
ATGCAGACTCCAGAAAATAA+GGG - Chr7:1062816-1062835 None:intergenic 35.0%
ATTCGGTTTCTATGTAGTCT+GGG - Chr7:1061564-1061583 None:intergenic 35.0%
CAAAACATTCAATACCTCGA+AGG - Chr7:1062104-1062123 None:intergenic 35.0%
CAAGTAATGTTGAATGCAGT+AGG + Chr7:1062382-1062401 MsG0780035994.01.T01:intron 35.0%
CAGTACAGAAGTTACAGTTA+TGG + Chr7:1059794-1059813 MsG0780035994.01.T01:exon 35.0%
CTACTGCATTCAACATTACT+TGG - Chr7:1062384-1062403 None:intergenic 35.0%
GAATCCTAGTATAACCAAGT+AGG - Chr7:1062425-1062444 None:intergenic 35.0%
GAATGCAGTAGGGTTAAATA+AGG + Chr7:1062393-1062412 MsG0780035994.01.T01:intron 35.0%
GATTTGACAACTTTACTCCT+AGG + Chr7:1061929-1061948 MsG0780035994.01.T01:intron 35.0%
GTTCTTTCAATCAGTCTTAG+AGG + Chr7:1060541-1060560 MsG0780035994.01.T01:intron 35.0%
TATGCGACCATAATAACCTA+TGG - Chr7:1062050-1062069 None:intergenic 35.0%
TATTTGAACTATGTCCCATG+AGG - Chr7:1061156-1061175 None:intergenic 35.0%
TCTACCTAAATCTCAATCTC+TGG + Chr7:1059851-1059870 MsG0780035994.01.T01:CDS 35.0%
TGAATGAGTGTGTGAATTGA+AGG - Chr7:1059901-1059920 None:intergenic 35.0%
! AAATCAAAGAGGAGCTTGTT+TGG + Chr7:1060596-1060615 MsG0780035994.01.T01:intron 35.0%
! ACACCTCTGTTCCAAATTTT+CGG - Chr7:1061083-1061102 None:intergenic 35.0%
! AGTTTGAGTTTGTAACCTCA+TGG + Chr7:1061138-1061157 MsG0780035994.01.T01:intron 35.0%
! ATTTTGTGCTAAGGAACCAA+GGG + Chr7:1063564-1063583 MsG0780035994.01.T01:CDS 35.0%
! GCAATGCGAATATGTTTTAC+AGG + Chr7:1063526-1063545 MsG0780035994.01.T01:intron 35.0%
! GGAAGTTGCTAGATTTTGAA+GGG - Chr7:1059756-1059775 None:intergenic 35.0%
! GTTTGAGTTTGTAACCTCAT+GGG + Chr7:1061139-1061158 MsG0780035994.01.T01:intron 35.0%
! TATTAAGCATGTGCTACTGT+TGG + Chr7:1062509-1062528 MsG0780035994.01.T01:intron 35.0%
! TGGAAGTTGCTAGATTTTGA+AGG - Chr7:1059757-1059776 None:intergenic 35.0%
! TTCATGTGCTTTGAATGTTC+AGG + Chr7:1062858-1062877 MsG0780035994.01.T01:intron 35.0%
!! AACTAACCTGAATGTTTTGG+TGG - Chr7:1063679-1063698 None:intergenic 35.0%
!!! AACCGCCTTTTGTTTTATTC+CGG - Chr7:1062081-1062100 None:intergenic 35.0%
!!! GTTTTGGTGGTGATATTTCA+GGG - Chr7:1063666-1063685 None:intergenic 35.0%
!!! TCTCTCCTTTCTTTGGTTTT+GGG - Chr7:1061705-1061724 None:intergenic 35.0%
!!! TGTTTTGGTGGTGATATTTC+AGG - Chr7:1063667-1063686 None:intergenic 35.0%
AAAGAAAGGAGAGACAGTAG+TGG + Chr7:1061711-1061730 MsG0780035994.01.T01:CDS 40.0%
AAATATGCAGGGTGATGACA+AGG + Chr7:1062193-1062212 MsG0780035994.01.T01:intron 40.0%
AACTTCACCTAGCGGAAAAA+GGG - Chr7:1063226-1063245 None:intergenic 40.0%
AATGGCCCAAAACCAAAGAA+AGG + Chr7:1061697-1061716 MsG0780035994.01.T01:CDS 40.0%
ACTACTGTCTCTCCTTTCTT+TGG - Chr7:1061712-1061731 None:intergenic 40.0%
ACTCTTACCGAGAATGTTGT+AGG - Chr7:1063456-1063475 None:intergenic 40.0%
AGAGTGAAGCTGGACAATAA+TGG + Chr7:1061023-1061042 MsG0780035994.01.T01:intron 40.0%
AGGTAGAGAAAGAGAAGCAA+TGG - Chr7:1059838-1059857 None:intergenic 40.0%
AGGTGTAACGTATGTCTATG+AGG + Chr7:1061097-1061116 MsG0780035994.01.T01:intron 40.0%
CAAGTTCCATTCAGGTAGAT+TGG + Chr7:1062014-1062033 MsG0780035994.01.T01:intron 40.0%
CTATCTAGACATTGTCGAAG+TGG + Chr7:1062137-1062156 MsG0780035994.01.T01:intron 40.0%
CTTATACTGGAGTCCAGATT+CGG - Chr7:1061581-1061600 None:intergenic 40.0%
GAAGAATCGGAGAGATTATC+AGG - Chr7:1059962-1059981 None:intergenic 40.0%
GAAGCCCGGAATAAAACAAA+AGG + Chr7:1062073-1062092 MsG0780035994.01.T01:CDS 40.0%
GACTACATAGAAACCGAATC+TGG + Chr7:1061565-1061584 MsG0780035994.01.T01:CDS 40.0%
GAGTTTAGTCCTAATCCCAA+AGG - Chr7:1062635-1062654 None:intergenic 40.0%
GATGCAGACTCCAGAAAATA+AGG - Chr7:1062817-1062836 None:intergenic 40.0%
GCTAGGTGAAGTTAGCTATA+TGG + Chr7:1063233-1063252 MsG0780035994.01.T01:intron 40.0%
GGCTACACCATAGGTTATTA+TGG + Chr7:1062040-1062059 MsG0780035994.01.T01:CDS 40.0%
GTAAATGGCATGAAAGGACT+TGG - Chr7:1062997-1063016 None:intergenic 40.0%
GTTCCTTAGCACAAAATCCA+AGG - Chr7:1063561-1063580 None:intergenic 40.0%
TAACTTCACCTAGCGGAAAA+AGG - Chr7:1063227-1063246 None:intergenic 40.0%
TCGACATCCTTCGTTAGTAT+TGG + Chr7:1062532-1062551 MsG0780035994.01.T01:intron 40.0%
TTGGCATAAGCACTTTGCAA+TGG + Chr7:1060642-1060661 MsG0780035994.01.T01:intron 40.0%
! AAGAGCTTCAAGTTCCATTC+AGG + Chr7:1062006-1062025 MsG0780035994.01.T01:intron 40.0%
! CAACCGAAAATTTGGAACAG+AGG + Chr7:1061077-1061096 MsG0780035994.01.T01:intron 40.0%
! CCTTGTTTGTGTGTCTGAAA+CGG + Chr7:1061291-1061310 MsG0780035994.01.T01:intron 40.0%
! CGTTACTGATGGTGAAAAGT+AGG + Chr7:1061368-1061387 MsG0780035994.01.T01:intron 40.0%
! CTGTACTGTACTTTGTTGTG+TGG - Chr7:1059782-1059801 None:intergenic 40.0%
! CTGTACTTTGTTGTGTGGAA+TGG - Chr7:1059777-1059796 None:intergenic 40.0%
! CTTATCTCTAAGAGTGAAGC+TGG + Chr7:1061013-1061032 MsG0780035994.01.T01:intron 40.0%
! GATTCGGTTTCTATGTAGTC+TGG - Chr7:1061565-1061584 None:intergenic 40.0%
! GATTTTGTGCTAAGGAACCA+AGG + Chr7:1063563-1063582 MsG0780035994.01.T01:CDS 40.0%
! GCTGGAACTTTTTGTAAAGG+AGG + Chr7:1060253-1060272 MsG0780035994.01.T01:CDS 40.0%
! GTTTTCCAACGTCGTTTGAA+CGG + Chr7:1060197-1060216 MsG0780035994.01.T01:CDS 40.0%
! TATGAAACCCTTTTTCCGCT+AGG + Chr7:1063216-1063235 MsG0780035994.01.T01:intron 40.0%
! TTTGTGTGTCTGAAACGGAA+AGG + Chr7:1061296-1061315 MsG0780035994.01.T01:intron 40.0%
!! AGTTGATGAACACTAGTGAC+AGG - Chr7:1063484-1063503 None:intergenic 40.0%
!! CAATGGTTTGGTAGAGCTTA+TGG + Chr7:1060659-1060678 MsG0780035994.01.T01:intron 40.0%
!! CATCCTTCGTTAGTATTGGT+TGG + Chr7:1062536-1062555 MsG0780035994.01.T01:intron 40.0%
!! GGTAATACCAGCTTTTGAAG+AGG + Chr7:1062879-1062898 MsG0780035994.01.T01:intron 40.0%
!! GGTCATTTTACACCTTCCTT+TGG - Chr7:1061180-1061199 None:intergenic 40.0%
!! GTCTCTCCTTTCTTTGGTTT+TGG - Chr7:1061706-1061725 None:intergenic 40.0%
!!! ACCGCCTTTTGTTTTATTCC+GGG - Chr7:1062080-1062099 None:intergenic 40.0%
AAACCCACGATAACACCTTG+TGG - Chr7:1062691-1062710 None:intergenic 45.0%
AAACCGACCATGACCTTCTT+CGG - Chr7:1061265-1061284 None:intergenic 45.0%
ACCGAGAATGTTGTAGGTCT+TGG - Chr7:1063450-1063469 None:intergenic 45.0%
ACGATAACACCTTGTGGCAA+AGG - Chr7:1062685-1062704 None:intergenic 45.0%
AGAAGTTCCGAAGAAGGTCA+TGG + Chr7:1061255-1061274 MsG0780035994.01.T01:intron 45.0%
AGTTCCAGCAATGACAGCAA+TGG - Chr7:1060242-1060261 None:intergenic 45.0%
ATTCAAAGTAGGATCGCACG+AGG + Chr7:1062226-1062245 MsG0780035994.01.T01:CDS 45.0%
CCCAAGACCTACAACATTCT+CGG + Chr7:1063446-1063465 MsG0780035994.01.T01:CDS 45.0%
CCGAGAATGTTGTAGGTCTT+GGG - Chr7:1063449-1063468 None:intergenic 45.0%
CCGTTTCAGACACACAAACA+AGG - Chr7:1061294-1061313 None:intergenic 45.0%
CGAATCTGGACTCCAGTATA+AGG + Chr7:1061579-1061598 MsG0780035994.01.T01:CDS 45.0%
CGATAACACCTTGTGGCAAA+GGG - Chr7:1062684-1062703 None:intergenic 45.0%
CTCTCAGGATATCCAAGTTC+TGG - Chr7:1063408-1063427 None:intergenic 45.0%
CTCTCCGATTCTTCTTTCTC+CGG + Chr7:1059968-1059987 MsG0780035994.01.T01:CDS 45.0%
CTGACCGGAGAAAGAAGAAT+CGG - Chr7:1059975-1059994 None:intergenic 45.0%
GAGCCAACCAATACTAACGA+AGG - Chr7:1062542-1062561 None:intergenic 45.0%
GCCCGGAATAAAACAAAAGG+CGG + Chr7:1062076-1062095 MsG0780035994.01.T01:CDS 45.0%
GGTAAAAGCAACGGTAAGAG+TGG + Chr7:1060166-1060185 MsG0780035994.01.T01:intron 45.0%
GTCGTTTGAACGGAGAAAGA+TGG + Chr7:1060207-1060226 MsG0780035994.01.T01:CDS 45.0%
TCCATTCAGGTAGATTGGGA+TGG + Chr7:1062019-1062038 MsG0780035994.01.T01:intron 45.0%
TCTAGAGGGAAAACCCTTTG+TGG + Chr7:1062469-1062488 MsG0780035994.01.T01:intron 45.0%
TCTTCCATTGCTGTCATTGC+TGG + Chr7:1060235-1060254 MsG0780035994.01.T01:CDS 45.0%
TGAAACGGAAAGGAGGAGAA+TGG + Chr7:1061306-1061325 MsG0780035994.01.T01:intron 45.0%
TTTCTCCGTTCAAACGACGT+TGG - Chr7:1060205-1060224 None:intergenic 45.0%
! ATGGTCGCATATTTGAAGCC+CGG + Chr7:1062059-1062078 MsG0780035994.01.T01:CDS 45.0%
! GAGCCTTGGATTTTGTGCTA+AGG + Chr7:1063555-1063574 MsG0780035994.01.T01:CDS 45.0%
! GAGTCTTGTCTATCAACCCT+TGG - Chr7:1063583-1063602 None:intergenic 45.0%
! TCAGGATATCCAAGTTCTGG+TGG - Chr7:1063405-1063424 None:intergenic 45.0%
! TGCAGTTGTGTCGTTACTGA+TGG + Chr7:1061357-1061376 MsG0780035994.01.T01:intron 45.0%
! TTGCCACAAGGTGTTATCGT+GGG + Chr7:1062685-1062704 MsG0780035994.01.T01:intron 45.0%
! TTTGCCACAAGGTGTTATCG+TGG + Chr7:1062684-1062703 MsG0780035994.01.T01:intron 45.0%
!!! CTTTGGTTTTGGGCCATTTC+CGG - Chr7:1061695-1061714 None:intergenic 45.0%
!!! TTTGGTTTTGGGCCATTTCC+GGG - Chr7:1061694-1061713 None:intergenic 45.0%
AAATTGCAGGACTTGCGACC+CGG + Chr7:1061673-1061692 MsG0780035994.01.T01:CDS 50.0%
AACAAAAGGCGGTTCCTTCG+AGG + Chr7:1062087-1062106 MsG0780035994.01.T01:CDS 50.0%
ACTTGGACGTAACACAGCTC+AGG - Chr7:1062980-1062999 None:intergenic 50.0%
ATACAGTGCCTGCGCTTAGA+GGG + Chr7:1061509-1061528 MsG0780035994.01.T01:intron 50.0%
CGACTTTACCCTTTGCCACA+AGG + Chr7:1062673-1062692 MsG0780035994.01.T01:intron 50.0%
CGATTCTTCTTTCTCCGGTC+AGG + Chr7:1059973-1059992 MsG0780035994.01.T01:intron 50.0%
CGTGCTGCATCACCTTATAC+TGG - Chr7:1061594-1061613 None:intergenic 50.0%
GAAGAGTCTGAACGCCCTTT+GGG + Chr7:1062617-1062636 MsG0780035994.01.T01:intron 50.0%
GATTGGGATGGCTACACCAT+AGG + Chr7:1062031-1062050 MsG0780035994.01.T01:CDS 50.0%
GCAACAGCCTCTTCAAAAGC+TGG - Chr7:1062889-1062908 None:intergenic 50.0%
GCACAAAATCCAAGGCTCGT+TGG - Chr7:1063553-1063572 None:intergenic 50.0%
GCCATCCCAATCTACCTGAA+TGG - Chr7:1062023-1062042 None:intergenic 50.0%
GCGCTTAGAGGGAAGGATTA+TGG + Chr7:1061520-1061539 MsG0780035994.01.T01:CDS 50.0%
GTTCCGAAGAAGGTCATGGT+CGG + Chr7:1061259-1061278 MsG0780035994.01.T01:intron 50.0%
TAATCCTTCCCTCTAAGCGC+AGG - Chr7:1061520-1061539 None:intergenic 50.0%
TGAAGAGTCTGAACGCCCTT+TGG + Chr7:1062616-1062635 MsG0780035994.01.T01:intron 50.0%
! GTGTGTCTGAAACGGAAAGG+AGG + Chr7:1061299-1061318 MsG0780035994.01.T01:intron 50.0%
!! GCTTTTGAAGAGGCTGTTGC+AGG + Chr7:1062889-1062908 MsG0780035994.01.T01:CDS 50.0%
!! TCTGAACGCCCTTTGGGATT+AGG + Chr7:1062623-1062642 MsG0780035994.01.T01:intron 50.0%
CATACAGTGCCTGCGCTTAG+AGG + Chr7:1061508-1061527 MsG0780035994.01.T01:intron 55.0%
CTGTTGCAGGCATGTCTCTC+GGG + Chr7:1062902-1062921 MsG0780035994.01.T01:CDS 55.0%
GCTGTTGCAGGCATGTCTCT+CGG + Chr7:1062901-1062920 MsG0780035994.01.T01:CDS 55.0%
TGTTGCAGGCATGTCTCTCG+GGG + Chr7:1062903-1062922 MsG0780035994.01.T01:CDS 55.0%
TTTACAGGGCCAACGAGCCT+TGG + Chr7:1063541-1063560 MsG0780035994.01.T01:intron 55.0%
AGTGCCTGCGCTTAGAGGGA+AGG + Chr7:1061513-1061532 MsG0780035994.01.T01:intron 60.0%
CAGGACTTGCGACCCGGAAA+TGG + Chr7:1061679-1061698 MsG0780035994.01.T01:CDS 60.0%
GTTGCAGGCATGTCTCTCGG+GGG + Chr7:1062904-1062923 MsG0780035994.01.T01:CDS 60.0%
!! TGTCTCTCGGGGGCATTCGA+AGG + Chr7:1062914-1062933 MsG0780035994.01.T01:CDS 60.0%
Chromosome Type Strat End Strand Name
Chr7 gene 1059733 1063730 1059733 ID=MsG0780035994.01;Name=MsG0780035994.01
Chr7 mRNA 1059733 1063730 1059733 ID=MsG0780035994.01.T01;Parent=MsG0780035994.01;Name=MsG0780035994.01.T01;_AED=0.40;_eAED=0.42;_QI=80|1|0.77|1|1|1|9|0|296
Chr7 exon 1059733 1059872 1059733 ID=MsG0780035994.01.T01:exon:15574;Parent=MsG0780035994.01.T01
Chr7 exon 1059956 1059989 1059956 ID=MsG0780035994.01.T01:exon:15575;Parent=MsG0780035994.01.T01
Chr7 exon 1060167 1060304 1060167 ID=MsG0780035994.01.T01:exon:15576;Parent=MsG0780035994.01.T01
Chr7 exon 1061515 1061732 1061515 ID=MsG0780035994.01.T01:exon:15577;Parent=MsG0780035994.01.T01
Chr7 exon 1062028 1062108 1062028 ID=MsG0780035994.01.T01:exon:15578;Parent=MsG0780035994.01.T01
Chr7 exon 1062203 1062247 1062203 ID=MsG0780035994.01.T01:exon:15579;Parent=MsG0780035994.01.T01
Chr7 exon 1062880 1062935 1062880 ID=MsG0780035994.01.T01:exon:15580;Parent=MsG0780035994.01.T01
Chr7 exon 1063392 1063467 1063392 ID=MsG0780035994.01.T01:exon:15581;Parent=MsG0780035994.01.T01
Chr7 exon 1063548 1063730 1063548 ID=MsG0780035994.01.T01:exon:15582;Parent=MsG0780035994.01.T01
Chr7 five_prime_UTR 1059733 1059812 1059733 ID=MsG0780035994.01.T01:five_prime_utr;Parent=MsG0780035994.01.T01
Chr7 CDS 1059813 1059872 1059813 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1059956 1059989 1059956 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1060167 1060304 1060167 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1061515 1061732 1061515 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1062028 1062108 1062028 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1062203 1062247 1062203 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1062880 1062935 1062880 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1063392 1063467 1063392 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Chr7 CDS 1063548 1063730 1063548 ID=MsG0780035994.01.T01:cds;Parent=MsG0780035994.01.T01
Gene Sequence

>MsG0780035994.01.T01

ATGGCTTCACTTTTGTCCTTTTCCATTGCTTCTCTTTCTCTACCTAAATCTCAATCTCTGGATCCTGATAATCTCTCCGATTCTTCTTTCTCCGGTAAAAGCAACGGTAAGAGTGGTAGTTGTTGTTTTCCAACGTCGTTTGAACGGAGAAAGATGGTTCTGTCTTCCATTGCTGTCATTGCTGGAACTTTTTGTAAAGGAGGAATTGGTCTTGCATCTGAATTTGCTGACATGCCTGCGCTTAGAGGGAAGGATTATGGCAAATCAAAAATGAAGTACCCAGACTACATAGAAACCGAATCTGGACTCCAGTATAAGGTGATGCAGCACGTTGTAAAATGTAAATGCTTTAGCGTTAAGAAAGCTTTGTTTTTAACTAGTAGTATTAATAAATTGCAGGACTTGCGACCCGGAAATGGCCCAAAACCAAAGAAAGGAGAGACAGTAGTGGTAGATTGGGATGGCTACACCATAGGTTATTATGGTCGCATATTTGAAGCCCGGAATAAAACAAAAGGCGGTTCCTTCGAGGGTGATGACAAGGACTTTTTCAAATTCAAAGTAGGATCGCACGAGGTAATACCAGCTTTTGAAGAGGCTGTTGCAGGCATGTCTCTCGGGGGCATTCGAAGGATAATTGTACCACCAGAACTTGGATATCCTGAGAGTGATTATAATAAAGGTGGCCCAAGACCTACAACATTCTCGGGCCAACGAGCCTTGGATTTTGTGCTAAGGAACCAAGGGTTGATAGACAAGACTCTCTTGTTTGATATTGAGCTAATGAAGATTATTCCAAATGATTTGTCAAATTCTTCATTGACCCTGAAATATCACCACCAAAACATTCAGGTTAGTTTCTATTTTATCGCTTGTCAGTATTTTCATTAG

Protein sequence

>MsG0780035994.01.T01

MASLLSFSIASLSLPKSQSLDPDNLSDSSFSGKSNGKSGSCCFPTSFERRKMVLSSIAVIAGTFCKGGIGLASEFADMPALRGKDYGKSKMKYPDYIETESGLQYKVMQHVVKCKCFSVKKALFLTSSINKLQDLRPGNGPKPKKGETVVVDWDGYTIGYYGRIFEARNKTKGGSFEGDDKDFFKFKVGSHEVIPAFEEAVAGMSLGGIRRIIVPPELGYPESDYNKGGPRPTTFSGQRALDFVLRNQGLIDKTLLFDIELMKIIPNDLSNSSLTLKYHHQNIQVSFYFIACQYFH*