AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015752.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015752.01.T01 MTR_3g076660 97.751 489 8 2 1 486 1 489 0.0 966
MsG0380015752.01.T01 MTR_2g021300 60.137 439 156 4 51 485 12 435 0.0 524
MsG0380015752.01.T01 MTR_7g094460 61.075 465 157 7 26 485 3 448 2.48e-180 513
MsG0380015752.01.T01 MTR_3g072130 44.939 247 94 7 244 485 101 310 7.74e-52 178
MsG0380015752.01.T01 MTR_6g021800 30.787 445 245 16 85 484 3 429 7.47e-46 166
MsG0380015752.01.T01 MTR_6g021805 30.787 445 245 16 85 484 3 429 7.47e-46 166
MsG0380015752.01.T01 MTR_1g495705 30.112 445 248 16 85 484 3 429 1.28e-44 162
MsG0380015752.01.T01 MTR_1g095650 30.112 445 248 16 85 484 3 429 1.28e-44 162
MsG0380015752.01.T01 MTR_1g095703 29.888 445 249 16 85 484 3 429 1.92e-44 162
MsG0380015752.01.T01 MTR_4g014810 29.663 445 250 16 85 484 3 429 3.13e-43 159
MsG0380015752.01.T01 MTR_8g087950 29.663 445 248 16 89 486 275 701 1.04e-41 158
MsG0380015752.01.T01 MTR_8g087950 29.663 445 248 16 89 486 348 774 1.32e-41 159
MsG0380015752.01.T01 MTR_1g013680 29.083 447 253 15 85 484 3 432 5.87e-41 153
MsG0380015752.01.T01 MTR_1g085410 30.222 450 235 19 85 481 3 426 9.39e-38 144
MsG0380015752.01.T01 MTR_1g101870 30.562 445 241 20 85 484 3 424 1.43e-35 141
MsG0380015752.01.T01 MTR_1g101870 30.512 449 236 22 85 484 3 424 2.07e-35 140
MsG0380015752.01.T01 MTR_1g024175 28.442 443 252 15 85 481 3 426 4.20e-35 136
MsG0380015752.01.T01 MTR_8g014590 26.906 446 265 14 84 484 2 431 1.55e-32 129
MsG0380015752.01.T01 MTR_6g080420 27.009 448 258 13 86 484 88 515 2.14e-32 130
MsG0380015752.01.T01 MTR_2g082730 27.739 429 256 15 87 481 5 413 2.74e-30 124
MsG0380015752.01.T01 MTR_8g106700 26.966 445 262 13 86 484 43 470 3.20e-30 123
MsG0380015752.01.T01 MTR_8g106700 26.966 445 262 13 86 484 49 476 5.48e-30 122
MsG0380015752.01.T01 MTR_8g008740 30.000 330 185 11 79 379 2 314 6.73e-30 122
MsG0380015752.01.T01 MTR_8g106700 26.966 445 262 13 86 484 70 497 1.01e-29 122
MsG0380015752.01.T01 MTR_1g089520 27.727 440 241 20 86 481 5 411 2.65e-25 109
MsG0380015752.01.T01 MTR_5g037350 25.780 481 258 16 83 481 10 473 5.06e-25 108
MsG0380015752.01.T01 MTR_1g095650 29.191 346 197 15 169 484 1 328 1.93e-24 104
MsG0380015752.01.T01 MTR_2g082665 27.273 429 232 18 87 481 5 387 2.49e-23 103
MsG0380015752.01.T01 MTR_2g080210 24.485 437 247 13 87 484 7 399 6.43e-22 98.6
MsG0380015752.01.T01 MTR_4g079360 30.830 253 161 7 91 340 59 300 1.17e-21 99.0
MsG0380015752.01.T01 MTR_2g037420 25.926 432 240 15 87 484 5 390 9.56e-21 95.1
MsG0380015752.01.T01 MTR_1g101880 31.646 158 80 3 83 215 1 155 1.28e-17 83.2
MsG0380015752.01.T01 MTR_1g024165 33.557 149 76 3 79 205 2 149 5.81e-17 78.2
MsG0380015752.01.T01 MTR_8g013910 25.220 341 188 11 83 383 1 314 3.97e-15 77.8
MsG0380015752.01.T01 MTR_2g075870 26.690 281 151 9 86 332 29 288 4.23e-14 74.7
MsG0380015752.01.T01 MTR_2g069440 26.855 283 148 11 86 332 29 288 8.09e-14 73.9
MsG0380015752.01.T01 MTR_2g069440 26.408 284 148 11 86 332 206 465 8.33e-14 74.3
MsG0380015752.01.T01 MTR_1g052535 24.845 322 220 8 80 393 73 380 1.52e-13 73.2
MsG0380015752.01.T01 MTR_1g052535 24.845 322 220 8 80 393 73 380 2.67e-13 72.8
MsG0380015752.01.T01 MTR_4g119340 34.518 197 107 8 84 269 10 195 1.73e-12 70.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015752.01.T01 AT4G20360 84.914 464 60 4 29 486 17 476 0.0 765
MsG0380015752.01.T01 AT4G20360 84.914 464 60 4 29 486 17 476 0.0 765
MsG0380015752.01.T01 AT4G02930 67.241 406 117 4 83 485 61 453 0.0 515
MsG0380015752.01.T01 AT5G60390 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT5G60390 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT5G60390 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT1G07920 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT1G07940 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT1G07940 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT1G07940 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT1G07940 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT1G07930 29.345 443 254 14 85 484 3 429 2.72e-44 162
MsG0380015752.01.T01 AT5G10630 29.452 438 258 14 89 486 315 741 3.10e-38 149
MsG0380015752.01.T01 AT5G10630 29.452 438 258 14 89 486 310 736 3.67e-38 148
MsG0380015752.01.T01 AT5G10630 29.478 441 254 15 89 486 239 665 4.17e-38 148
MsG0380015752.01.T01 AT5G10630 29.478 441 254 15 89 486 240 666 4.20e-38 148
MsG0380015752.01.T01 AT5G10630 29.478 441 254 15 89 486 240 666 4.20e-38 148
MsG0380015752.01.T01 AT1G18070 25.577 477 287 14 60 485 67 526 1.08e-31 128
MsG0380015752.01.T01 AT1G18070 25.577 477 287 14 60 485 67 526 1.08e-31 128
MsG0380015752.01.T01 AT1G07930 32.075 265 138 9 85 319 3 255 1.28e-30 122
MsG0380015752.01.T01 AT1G18070 25.205 488 286 15 60 485 67 537 5.01e-29 120
MsG0380015752.01.T01 AT2G31060 32.157 255 155 8 91 340 61 302 4.12e-21 97.1
MsG0380015752.01.T01 AT2G31060 32.046 259 154 9 91 340 61 306 3.03e-20 94.4
MsG0380015752.01.T01 AT2G18720 27.143 280 149 11 86 332 35 292 4.44e-16 80.9
MsG0380015752.01.T01 AT2G18720 27.143 280 149 11 86 332 35 292 4.44e-16 80.9
MsG0380015752.01.T01 AT5G13650 24.806 387 253 11 1 374 1 362 5.52e-16 81.3
MsG0380015752.01.T01 AT1G04170 27.046 281 150 10 86 332 30 289 1.60e-15 79.3
MsG0380015752.01.T01 AT1G04170 27.046 281 150 10 86 332 30 289 1.60e-15 79.3
MsG0380015752.01.T01 AT5G13650 24.620 329 214 8 62 374 51 361 1.96e-15 79.7
MsG0380015752.01.T01 AT4G18330 27.076 277 147 10 90 332 40 295 3.22e-15 78.2
MsG0380015752.01.T01 AT4G18330 29.843 191 105 7 90 254 40 227 9.35e-14 72.0
MsG0380015752.01.T01 AT5G39900 25.472 318 194 10 29 334 7 293 1.04e-12 70.9
MsG0380015752.01.T01 AT2G18720 27.368 190 108 5 152 332 33 201 1.06e-12 70.1

Find 178 sgRNAs with CRISPR-Local

Find 222 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCATCATTGATGCAATTTA+AGG 0.087502 3:-74603772 None:intergenic
GATGACATTCCGATTGTTTC+TGG 0.182010 3:+74602790 MsG0380015752.01.T01:CDS
GGAAATGTTTCAGAAGATTT+TGG 0.183773 3:+74603101 MsG0380015752.01.T01:CDS
CATTCAACTCTATCTAATTA+AGG 0.190638 3:-74603828 None:intergenic
TTGTGTTATCCTCTCACTTT+TGG 0.213891 3:-74601654 None:intergenic
CACCTTTCTTTGCTGGTTAT+AGG 0.252585 3:+74603286 MsG0380015752.01.T01:CDS
TGTTTCTGGTTCAGCGCTAT+TGG 0.258255 3:+74602804 MsG0380015752.01.T01:CDS
GGATAAGATTTATAAACTTA+TGG 0.261517 3:+74602882 MsG0380015752.01.T01:CDS
ATCCTCAATAGCTAGCAAAA+AGG 0.263547 3:-74602953 None:intergenic
GAGGCGAGTTAGGGTTAGTT+TGG 0.273503 3:-74601938 None:intergenic
AGGAGGAAGAGAGGCGAGTT+AGG 0.275765 3:-74601948 None:intergenic
CGGATTGTCTTTAGTCGAAT+TGG 0.292281 3:+74603670 MsG0380015752.01.T01:three_prime_UTR
GCCTCATATGCGTGCTATAA+TGG 0.308463 3:+74603873 MsG0380015752.01.T01:three_prime_UTR
CGCTGCTCTCACCATGGCTT+TGG 0.310361 3:+74602137 MsG0380015752.01.T01:CDS
GGAGCGAGTGGTGGTTGGTT+TGG 0.311291 3:-74602010 None:intergenic
AGGGGTGAGGTGGAGGATTG+TGG 0.312038 3:-74601983 None:intergenic
ATTGGTGGAAGGGGAGGAAA+TGG 0.323140 3:-74601908 None:intergenic
TGGAGGAAGGGGTGAGGTGG+AGG 0.325736 3:-74601990 None:intergenic
AGCGAGAAGGATGTGTTCTT+TGG 0.340715 3:-74602397 None:intergenic
ACTTGTGGAGCTTGAAGTTC+GGG 0.340961 3:+74602738 MsG0380015752.01.T01:CDS
GAGTGAGGAGTGATAGTTCC+AGG 0.341582 3:-74603210 None:intergenic
GTTTGGAGGAAGGGGTGAGG+TGG 0.344028 3:-74601993 None:intergenic
AGACATTCACCTTTCTTTGC+TGG 0.352845 3:+74603279 MsG0380015752.01.T01:CDS
CTCTCGTCTTACGAATTTCC+TGG 0.356869 3:+74602766 MsG0380015752.01.T01:CDS
TGAAGGTGTGGGTGTGTGGT+GGG 0.357080 3:-74601873 None:intergenic
TTGGTTTGGAGGAAGGGGTG+AGG 0.361287 3:-74601996 None:intergenic
GGGCGGCACGGACGGTGAAA+GGG 0.362945 3:-74602035 None:intergenic
ACCGTTGGAGCTGGTGTTAT+CGG 0.367859 3:+74603486 MsG0380015752.01.T01:CDS
ATAGGGTTAAATTTAACTTT+CGG 0.368400 3:+74603650 MsG0380015752.01.T01:three_prime_UTR
GGAGGATTGTGGAGGGGTTG+AGG 0.370592 3:-74601972 None:intergenic
AACTTGTGGAGCTTGAAGTT+CGG 0.370653 3:+74602737 MsG0380015752.01.T01:CDS
TTATCACCACGTTTAATAGT+AGG 0.374526 3:-74602850 None:intergenic
GGGAGATCTGTTTGTCTTTG+AGG 0.374733 3:-74602931 None:intergenic
GGTTAGTTTGGGACGGAGAT+TGG 0.379136 3:-74601926 None:intergenic
GTGGTGGTTGGTTTGGAGGA+AGG 0.379395 3:-74602003 None:intergenic
TCTGTTTGTCTTTGAGGGAT+TGG 0.380993 3:-74602925 None:intergenic
TGGTGGTTGGTTTGGAGGAA+GGG 0.381462 3:-74602002 None:intergenic
GGAGATCTGTTTGTCTTTGA+GGG 0.382317 3:-74602930 None:intergenic
AGGCGAGTTAGGGTTAGTTT+GGG 0.389250 3:-74601937 None:intergenic
TATTCAAAGAGGGATGGTTT+TGG 0.389492 3:+74603182 MsG0380015752.01.T01:CDS
TGTTCTTTGGTTTGAGGCAT+AGG 0.393640 3:-74602384 None:intergenic
CGGGCGGCACGGACGGTGAA+AGG 0.394872 3:-74602036 None:intergenic
ATACCACGAGCACGTTCTTC+AGG 0.396105 3:-74602210 None:intergenic
ATTCAACTCTATCTAATTAA+GGG 0.403038 3:-74603827 None:intergenic
GTGAAGGTGTGGGTGTGTGG+TGG 0.407058 3:-74601874 None:intergenic
ACGGAGATTGGTGGAAGGGG+AGG 0.407272 3:-74601914 None:intergenic
GGAGGAAATGGAAGCGGAAG+TGG 0.408836 3:-74601896 None:intergenic
GGAGGAAGAGAGGCGAGTTA+GGG 0.409378 3:-74601947 None:intergenic
GCGAGTGGTGGTTGGTTTGG+AGG 0.412925 3:-74602007 None:intergenic
GGTGGTTGGTTTGGAGGAAG+GGG 0.418455 3:-74602001 None:intergenic
GTGGTGAAGGTGTGGGTGTG+TGG 0.422895 3:-74601877 None:intergenic
GGGACGGAGATTGGTGGAAG+GGG 0.423977 3:-74601917 None:intergenic
CTGCATCATCACTCTTCAAA+TGG 0.430090 3:+74603546 MsG0380015752.01.T01:three_prime_UTR
GTGTTGTGAGAGTTTGAGTT+TGG 0.431138 3:-74601851 None:intergenic
GGCGGCACGGACGGTGAAAG+GGG 0.436818 3:-74602034 None:intergenic
GTGAGGTGGAGGATTGTGGA+GGG 0.438591 3:-74601979 None:intergenic
ATTGGCGTTGGAAGCATTAG+TGG 0.440962 3:+74602822 MsG0380015752.01.T01:CDS
TGAGGTGGAGGATTGTGGAG+GGG 0.441869 3:-74601978 None:intergenic
AAGAGTGATGATGCAGCAAC+TGG 0.446921 3:-74603539 None:intergenic
GATTGTGGAGGGGTTGAGGA+AGG 0.459794 3:-74601968 None:intergenic
ATGAGGTTTGCTATTAGAGA+AGG 0.465146 3:+74603456 MsG0380015752.01.T01:CDS
TTGTGAGAGTTTGAGTTTGG+TGG 0.467241 3:-74601848 None:intergenic
GGTTGAGGAAGGAGGAAGAG+AGG 0.468935 3:-74601957 None:intergenic
GGTGAGGTGGAGGATTGTGG+AGG 0.468994 3:-74601980 None:intergenic
GGTGATGTAGTTGACCTTGT+TGG 0.469409 3:+74603042 MsG0380015752.01.T01:CDS
CACCATCTTAACACGATCAC+CGG 0.483098 3:-74603397 None:intergenic
GGCACGGACGGTGAAAGGGG+AGG 0.483277 3:-74602031 None:intergenic
CTCGTTGTCTCCGGTGCCGA+TGG 0.486396 3:+74602360 MsG0380015752.01.T01:CDS
CAGAAGATTGATATTCAAAG+AGG 0.486716 3:+74603171 MsG0380015752.01.T01:CDS
AGGTTTGCTATTAGAGAAGG+AGG 0.486983 3:+74603459 MsG0380015752.01.T01:CDS
ATGAGAACCACAGATGTTAC+CGG 0.488905 3:+74603321 MsG0380015752.01.T01:CDS
GGCGCTATTCTCGTTGTCTC+CGG 0.489588 3:+74602351 MsG0380015752.01.T01:CDS
TAGTTGACCTTGTTGGTTTG+AGG 0.490161 3:+74603049 MsG0380015752.01.T01:CDS
TGTGGAGGGGTTGAGGAAGG+AGG 0.491699 3:-74601965 None:intergenic
TATCACCACGTTTAATAGTA+GGG 0.492921 3:-74602849 None:intergenic
TGCCACCGGAAGAATTGAAA+GGG 0.496315 3:+74603005 MsG0380015752.01.T01:CDS
AGTTGACCTTGTTGGTTTGA+GGG 0.496349 3:+74603050 MsG0380015752.01.T01:CDS
GGGGAGGAGCGAGTGGTGGT+TGG 0.499727 3:-74602015 None:intergenic
CAATGATGAGATTGTGTTGA+GGG 0.503110 3:+74603785 MsG0380015752.01.T01:three_prime_UTR
CGAATTTGCCACGGGCGGCA+CGG 0.503769 3:-74602047 None:intergenic
TTTGCCACGGGCGGCACGGA+CGG 0.506319 3:-74602043 None:intergenic
TTTGCGCTCGAATTTGCCAC+GGG 0.508126 3:-74602055 None:intergenic
TCCATTATAGCACGCATATG+AGG 0.508261 3:-74603874 None:intergenic
GATTACTGGTGCTGCTCAGA+TGG 0.508789 3:+74602326 MsG0380015752.01.T01:CDS
TTGACATAATCAGCGTGACC+GGG 0.509142 3:-74602297 None:intergenic
AGGATGTGTTCTTTGGTTTG+AGG 0.511066 3:-74602390 None:intergenic
ACACATCCTTCTCGCTAAGC+AGG 0.511666 3:+74602404 MsG0380015752.01.T01:CDS
TGGTTCAGCGCTATTGGCGT+TGG 0.516474 3:+74602810 MsG0380015752.01.T01:CDS
GCCATGGTCGACGTGGCCGA+TGG 0.516822 3:-74602100 None:intergenic
TAGTTTGGGACGGAGATTGG+TGG 0.518165 3:-74601923 None:intergenic
ATTCCTTGTTCAATAGCCAC+AGG 0.523741 3:-74603435 None:intergenic
ACCGCAGACAAGTTGTATGA+AGG 0.526503 3:-74603621 None:intergenic
TGAGGAGCTTCTTGAACTTG+TGG 0.528672 3:+74602723 MsG0380015752.01.T01:CDS
AGAGAAGGAGGGAAGACCGT+TGG 0.533076 3:+74603471 MsG0380015752.01.T01:CDS
ACAATCGGAATGTCATCTCC+AGG 0.533175 3:-74602784 None:intergenic
TTCAAGAACACAACCACACT+CGG 0.534270 3:-74602679 None:intergenic
TTCACCGTCCGTGCCGCCCG+TGG 0.534451 3:+74602039 MsG0380015752.01.T01:CDS
TGGGACGGAGATTGGTGGAA+GGG 0.535402 3:-74601918 None:intergenic
GGAGGGAAGACCGTTGGAGC+TGG 0.536449 3:+74603477 MsG0380015752.01.T01:CDS
GGCCTATAACCAGCAAAGAA+AGG 0.537786 3:-74603288 None:intergenic
GGTGAAAGGGGAGGAGCGAG+TGG 0.540841 3:-74602022 None:intergenic
TTTGACATAATCAGCGTGAC+CGG 0.542109 3:-74602298 None:intergenic
AAGCGGAAGTGGTGAAGGTG+TGG 0.545502 3:-74601885 None:intergenic
TATGCTCATGTTGATTGCCC+CGG 0.546751 3:+74602279 MsG0380015752.01.T01:CDS
AATGGAAGCGGAAGTGGTGA+AGG 0.549887 3:-74601890 None:intergenic
GGTGAGAGCAGCGGTTAAAG+TGG 0.550233 3:-74602127 None:intergenic
CAAGGATGAGGAGTCGAAGA+TGG 0.551958 3:+74603368 MsG0380015752.01.T01:CDS
CAATTCATTTCGATAAGAAG+AGG 0.553893 3:+74601674 MsG0380015752.01.T01:five_prime_UTR
GGTTTGAGGCATAGGACCAT+CGG 0.555353 3:-74602376 None:intergenic
ACCATGGCTTTGGCTTCTCT+AGG 0.555375 3:+74602147 MsG0380015752.01.T01:CDS
AAATGAGAAGAGAAGAGAAG+AGG 0.555485 3:-74601774 None:intergenic
TAATTACCTGCTTAGCGAGA+AGG 0.556327 3:-74602410 None:intergenic
ACGAGGAGCACTACAGTGAC+CGG 0.557284 3:+74603075 MsG0380015752.01.T01:CDS
CCGCAGACAAGTTGTATGAA+GGG 0.558624 3:-74603620 None:intergenic
AGCGGAAGTGGTGAAGGTGT+GGG 0.561639 3:-74601884 None:intergenic
GGTTTGCTATTAGAGAAGGA+GGG 0.562103 3:+74603460 MsG0380015752.01.T01:CDS
AGCGCTGAACCAGAAACAAT+CGG 0.562250 3:-74602799 None:intergenic
GGAAGGGGAGGAAATGGAAG+CGG 0.564051 3:-74601902 None:intergenic
CATCTCAACATCGGAACCAT+CGG 0.564830 3:+74602084 MsG0380015752.01.T01:CDS
TTGGGACGGAGATTGGTGGA+AGG 0.565908 3:-74601919 None:intergenic
AGGCATAGGACCATCGGCAC+CGG 0.568713 3:-74602370 None:intergenic
GAGTTAGGGTTAGTTTGGGA+CGG 0.569223 3:-74601933 None:intergenic
GATTGATATTCAAAGAGGGA+TGG 0.573204 3:+74603176 MsG0380015752.01.T01:CDS
TCCGATAACACCAGCTCCAA+CGG 0.573833 3:-74603487 None:intergenic
GAAAGGGGAGGAGCGAGTGG+TGG 0.575537 3:-74602019 None:intergenic
TTGCCACCGGAAGAATTGAA+AGG 0.577024 3:+74603004 MsG0380015752.01.T01:CDS
GTCCCTGTGGCTATTGAACA+AGG 0.580048 3:+74603432 MsG0380015752.01.T01:CDS
TGCTATGGCTGGTGATAACG+TGG 0.580824 3:+74603128 MsG0380015752.01.T01:CDS
TTAAACGTGGTGATAACGAG+TGG 0.581448 3:+74602857 MsG0380015752.01.T01:CDS
TGGCTATTGAACAAGGAATG+AGG 0.586309 3:+74603439 MsG0380015752.01.T01:CDS
TCTTTCGGAGTGAAGAGAAG+AGG 0.587110 3:-74601733 None:intergenic
TTCTCTTCACTCCGAAAGAG+AGG 0.587313 3:+74601737 MsG0380015752.01.T01:five_prime_UTR
TATCATGAATGACAAGGATG+AGG 0.592077 3:+74603356 MsG0380015752.01.T01:CDS
GCCCGGTGATCGTGTTAAGA+TGG 0.593994 3:+74603395 MsG0380015752.01.T01:CDS
AATTAAGGGTAAAACTGTAA+CGG 0.602876 3:-74603813 None:intergenic
GAAGCTCCTCATCATCCACT+TGG 0.605442 3:-74602711 None:intergenic
ACCATCTTAACACGATCACC+GGG 0.606257 3:-74603396 None:intergenic
ACCATCGGCCACGTCGACCA+TGG 0.607333 3:+74602099 MsG0380015752.01.T01:CDS
AGAAGATTGATATTCAAAGA+GGG 0.608439 3:+74603172 MsG0380015752.01.T01:CDS
CAACTTACAAAACATCCCGA+TGG 0.612642 3:-74603704 None:intergenic
TTAGGTTGGTGTTCCGAGTG+TGG 0.613093 3:+74602666 MsG0380015752.01.T01:intron
GCGCTCGAATTTGCCACGGG+CGG 0.613444 3:-74602052 None:intergenic
GGTTGTGTTCTTGAACAAGC+AGG 0.616431 3:+74602687 MsG0380015752.01.T01:CDS
CTTCTGAAACATTTCCACTC+CGG 0.617102 3:-74603094 None:intergenic
GCAGGACCAAGTGGATGATG+AGG 0.618136 3:+74602705 MsG0380015752.01.T01:CDS
CCCTTCATACAACTTGTCTG+CGG 0.619908 3:+74603620 MsG0380015752.01.T01:three_prime_UTR
CGCGTCACTCCAAAAGTGAG+AGG 0.622139 3:+74601645 MsG0380015752.01.T01:five_prime_UTR
ATGGTTCCGATGTTGAGATG+AGG 0.622236 3:-74602081 None:intergenic
ACCTAGAGAAGCCAAAGCCA+TGG 0.627081 3:-74602148 None:intergenic
AGAAGAAATTGAAATTGCCA+TGG 0.628092 3:-74601818 None:intergenic
CTTCACTCTCAATTCAACCA+TGG 0.628488 3:+74601801 MsG0380015752.01.T01:exon
ACTGGTGCTGCTCAGATGGA+CGG 0.628856 3:+74602330 MsG0380015752.01.T01:CDS
CAAAGCCATGGTGAGAGCAG+CGG 0.629976 3:-74602136 None:intergenic
TTTAACCGCTGCTCTCACCA+TGG 0.631615 3:+74602131 MsG0380015752.01.T01:CDS
GGTCGTGGAACAGTTGCCAC+CGG 0.632950 3:+74602991 MsG0380015752.01.T01:CDS
GCTCCTGAAGAACGTGCTCG+TGG 0.633471 3:+74602207 MsG0380015752.01.T01:CDS
TTGTTGGTTTGAGGGAAACG+AGG 0.634090 3:+74603058 MsG0380015752.01.T01:CDS
TGACATAATCAGCGTGACCG+GGG 0.635143 3:-74602296 None:intergenic
GAGTCGAAGATGGTGATGCC+CGG 0.639572 3:+74603378 MsG0380015752.01.T01:CDS
CGGTGATCGTGTTAAGATGG+TGG 0.643732 3:+74603398 MsG0380015752.01.T01:CDS
TCGTTTCCCTCAAACCAACA+AGG 0.646895 3:-74603056 None:intergenic
ACGTGGTGATAACGAGTGGG+TGG 0.647355 3:+74602861 MsG0380015752.01.T01:CDS
GGTTGAACTCATTGTCCCTG+TGG 0.649883 3:+74603419 MsG0380015752.01.T01:CDS
TTCCTTGTTCAATAGCCACA+GGG 0.659471 3:-74603434 None:intergenic
ATACATTCAAACTTAGAGTG+AGG 0.660448 3:-74603225 None:intergenic
CTTGAACAAGCAGGACCAAG+TGG 0.660677 3:+74602696 MsG0380015752.01.T01:CDS
TAAACGTGGTGATAACGAGT+GGG 0.671761 3:+74602858 MsG0380015752.01.T01:CDS
CCACCGGAAGAATTGAAAGG+GGG 0.679857 3:+74603007 MsG0380015752.01.T01:CDS
AACGTGGGTTTGTTGCTGAG+AGG 0.684650 3:+74603144 MsG0380015752.01.T01:CDS
GCCACCGGAAGAATTGAAAG+GGG 0.695004 3:+74603006 MsG0380015752.01.T01:CDS
GTGGTTCTCATGTAAAACTG+AGG 0.696417 3:-74603309 None:intergenic
TACATCTATCATGAATGACA+AGG 0.699849 3:+74603350 MsG0380015752.01.T01:CDS
TGAATGTTACTCATAATCTG+TGG 0.702965 3:+74603845 MsG0380015752.01.T01:three_prime_UTR
TCAATGATGAGATTGTGTTG+AGG 0.708905 3:+74603784 MsG0380015752.01.T01:three_prime_UTR
GAGCACTACAGTGACCGGAG+TGG 0.711476 3:+74603080 MsG0380015752.01.T01:CDS
GCAAACCCTACTATTAAACG+TGG 0.729265 3:+74602844 MsG0380015752.01.T01:CDS
GCTATGGCTGGTGATAACGT+GGG 0.737390 3:+74603129 MsG0380015752.01.T01:CDS
TGAAGCAAAGTAGTGCACCG+CGG 0.776250 3:+74601622 MsG0380015752.01.T01:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTCAACTCTATCTAATTAA+GGG - Chr3:74603830-74603849 None:intergenic 20.0%
!! GGATAAGATTTATAAACTTA+TGG + Chr3:74602882-74602901 MsG0380015752.01.T01:CDS 20.0%
!! TATGTCAAAAATATGATTAC+TGG + Chr3:74602312-74602331 MsG0380015752.01.T01:CDS 20.0%
!!! AATTTCATCGTATTTTTTAG+GGG - Chr3:74602181-74602200 None:intergenic 20.0%
!!! ATAGGGTTAAATTTAACTTT+CGG + Chr3:74603650-74603669 MsG0380015752.01.T01:three_prime_UTR 20.0%
!!! CAATTTCATCGTATTTTTTA+GGG - Chr3:74602182-74602201 None:intergenic 20.0%
!!! TCAATTTCATCGTATTTTTT+AGG - Chr3:74602183-74602202 None:intergenic 20.0%
!!! TCTAGTCTGTATATAAATTT+TGG + Chr3:74602568-74602587 MsG0380015752.01.T01:intron 20.0%
!!! TGAAATGTTTGTTTTTTGAT+TGG + Chr3:74602635-74602654 MsG0380015752.01.T01:intron 20.0%
! AATTAAGGGTAAAACTGTAA+CGG - Chr3:74603816-74603835 None:intergenic 25.0%
! AGAAGATTGATATTCAAAGA+GGG + Chr3:74603172-74603191 MsG0380015752.01.T01:CDS 25.0%
! CATTCAACTCTATCTAATTA+AGG - Chr3:74603831-74603850 None:intergenic 25.0%
!!! ATGTTTGTTTTTTGATTGGT+TGG + Chr3:74602639-74602658 MsG0380015752.01.T01:intron 25.0%
!!! ATTGGATACTATTTTTCCAT+CGG + Chr3:74603688-74603707 MsG0380015752.01.T01:three_prime_UTR 25.0%
!!! TATTGTGTATGTTTTGAAGA+AGG + Chr3:74603245-74603264 MsG0380015752.01.T01:CDS 25.0%
!!! TTTTGAATCGTTGGTTTTAA+TGG + Chr3:74602611-74602630 MsG0380015752.01.T01:intron 25.0%
AGAAGAAATTGAAATTGCCA+TGG - Chr3:74601821-74601840 None:intergenic 30.0%
ATACATTCAAACTTAGAGTG+AGG - Chr3:74603228-74603247 None:intergenic 30.0%
CAATTCATTTCGATAAGAAG+AGG + Chr3:74601674-74601693 MsG0380015752.01.T01:five_prime_UTR 30.0%
CAGAAGATTGATATTCAAAG+AGG + Chr3:74603171-74603190 MsG0380015752.01.T01:CDS 30.0%
CTCATCATTGATGCAATTTA+AGG - Chr3:74603775-74603794 None:intergenic 30.0%
TAAAAAATCTAAGCTGCAGT+GGG + Chr3:74601589-74601608 MsG0380015752.01.T01:five_prime_UTR 30.0%
TACATCTATCATGAATGACA+AGG + Chr3:74603350-74603369 MsG0380015752.01.T01:CDS 30.0%
TATCACCACGTTTAATAGTA+GGG - Chr3:74602852-74602871 None:intergenic 30.0%
TGAATGTTACTCATAATCTG+TGG + Chr3:74603845-74603864 MsG0380015752.01.T01:three_prime_UTR 30.0%
TTAAAAAATCTAAGCTGCAG+TGG + Chr3:74601588-74601607 MsG0380015752.01.T01:five_prime_UTR 30.0%
TTATCACCACGTTTAATAGT+AGG - Chr3:74602853-74602872 None:intergenic 30.0%
! ATGTATGGTTTTTGAATCGT+TGG + Chr3:74602602-74602621 MsG0380015752.01.T01:intron 30.0%
! CATGATAGATGTAACTTTTC+CGG - Chr3:74603343-74603362 None:intergenic 30.0%
! GGAAATGTTTCAGAAGATTT+TGG + Chr3:74603101-74603120 MsG0380015752.01.T01:CDS 30.0%
! GGATTTTGTATTGTATTGTG+TGG - Chr3:74601715-74601734 None:intergenic 30.0%
! TTGGTGATTATCGTTATGTA+TGG + Chr3:74602587-74602606 MsG0380015752.01.T01:intron 30.0%
! TTGTCTGCGGTAATTTTATA+GGG + Chr3:74603633-74603652 MsG0380015752.01.T01:three_prime_UTR 30.0%
!! TGTTTTGTTATCCTCTCTTT+CGG - Chr3:74601751-74601770 None:intergenic 30.0%
!! TTGGATACTATTTTTCCATC+GGG + Chr3:74603689-74603708 MsG0380015752.01.T01:three_prime_UTR 30.0%
!! TTTTGATTGGTTGGTATCTT+AGG + Chr3:74602648-74602667 MsG0380015752.01.T01:intron 30.0%
!!! TATGTTTTGAAGAAGGAAGA+AGG + Chr3:74603252-74603271 MsG0380015752.01.T01:CDS 30.0%
AAAAAGCCTCATCTCAACAT+CGG + Chr3:74602075-74602094 MsG0380015752.01.T01:CDS 35.0%
AAATGAGAAGAGAAGAGAAG+AGG - Chr3:74601777-74601796 None:intergenic 35.0%
ATCCTCAATAGCTAGCAAAA+AGG - Chr3:74602956-74602975 None:intergenic 35.0%
CAATGATGAGATTGTGTTGA+GGG + Chr3:74603785-74603804 MsG0380015752.01.T01:three_prime_UTR 35.0%
GAATTAATGCAACAGCTGTA+TGG + Chr3:74602510-74602529 MsG0380015752.01.T01:intron 35.0%
GATTGATATTCAAAGAGGGA+TGG + Chr3:74603176-74603195 MsG0380015752.01.T01:CDS 35.0%
TATCATGAATGACAAGGATG+AGG + Chr3:74603356-74603375 MsG0380015752.01.T01:CDS 35.0%
TCAATGATGAGATTGTGTTG+AGG + Chr3:74603784-74603803 MsG0380015752.01.T01:three_prime_UTR 35.0%
TCCTCAATAGCTAGCAAAAA+GGG - Chr3:74602955-74602974 None:intergenic 35.0%
! CTTGTCTGCGGTAATTTTAT+AGG + Chr3:74603632-74603651 MsG0380015752.01.T01:three_prime_UTR 35.0%
! TATTCAAAGAGGGATGGTTT+TGG + Chr3:74603182-74603201 MsG0380015752.01.T01:CDS 35.0%
! TTGTGTTATCCTCTCACTTT+TGG - Chr3:74601657-74601676 None:intergenic 35.0%
!! ATGAGGTTTGCTATTAGAGA+AGG + Chr3:74603456-74603475 MsG0380015752.01.T01:CDS 35.0%
AACTTGTGGAGCTTGAAGTT+CGG + Chr3:74602737-74602756 MsG0380015752.01.T01:CDS 40.0%
AGACATTCACCTTTCTTTGC+TGG + Chr3:74603279-74603298 MsG0380015752.01.T01:CDS 40.0%
ATGAGAACCACAGATGTTAC+CGG + Chr3:74603321-74603340 MsG0380015752.01.T01:CDS 40.0%
ATTCCTTGTTCAATAGCCAC+AGG - Chr3:74603438-74603457 None:intergenic 40.0%
CAACTTACAAAACATCCCGA+TGG - Chr3:74603707-74603726 None:intergenic 40.0%
CCTCAATAGCTAGCAAAAAG+GGG - Chr3:74602954-74602973 None:intergenic 40.0%
CGGATTGTCTTTAGTCGAAT+TGG + Chr3:74603670-74603689 MsG0380015752.01.T01:three_prime_UTR 40.0%
CTGCATCATCACTCTTCAAA+TGG + Chr3:74603546-74603565 MsG0380015752.01.T01:three_prime_UTR 40.0%
CTTCACTCTCAATTCAACCA+TGG + Chr3:74601801-74601820 MsG0380015752.01.T01:exon 40.0%
GATGACATTCCGATTGTTTC+TGG + Chr3:74602790-74602809 MsG0380015752.01.T01:CDS 40.0%
GCAAACCCTACTATTAAACG+TGG + Chr3:74602844-74602863 MsG0380015752.01.T01:CDS 40.0%
GCAACAGCTGTATGGAATTT+AGG + Chr3:74602518-74602537 MsG0380015752.01.T01:intron 40.0%
GGAGATCTGTTTGTCTTTGA+GGG - Chr3:74602933-74602952 None:intergenic 40.0%
GTGGTTCTCATGTAAAACTG+AGG - Chr3:74603312-74603331 None:intergenic 40.0%
TAATTACCTGCTTAGCGAGA+AGG - Chr3:74602413-74602432 None:intergenic 40.0%
TCCATTATAGCACGCATATG+AGG - Chr3:74603877-74603896 None:intergenic 40.0%
TGGCTATTGAACAAGGAATG+AGG + Chr3:74603439-74603458 MsG0380015752.01.T01:CDS 40.0%
TTCAAGAACACAACCACACT+CGG - Chr3:74602682-74602701 None:intergenic 40.0%
TTCCTTGTTCAATAGCCACA+GGG - Chr3:74603437-74603456 None:intergenic 40.0%
TTTGACATAATCAGCGTGAC+CGG - Chr3:74602301-74602320 None:intergenic 40.0%
! AACTTTTCCGGTAACATCTG+TGG - Chr3:74603331-74603350 None:intergenic 40.0%
! CACCTTTCTTTGCTGGTTAT+AGG + Chr3:74603286-74603305 MsG0380015752.01.T01:CDS 40.0%
! GAAGATTTTGGACGATGCTA+TGG + Chr3:74603113-74603132 MsG0380015752.01.T01:CDS 40.0%
! GAGGATGTGTTTTCAATCAC+TGG + Chr3:74602970-74602989 MsG0380015752.01.T01:CDS 40.0%
! GATTGGTTGGTATCTTAGGT+TGG + Chr3:74602652-74602671 MsG0380015752.01.T01:intron 40.0%
! GTGTTGTGAGAGTTTGAGTT+TGG - Chr3:74601854-74601873 None:intergenic 40.0%
! TAAACGTGGTGATAACGAGT+GGG + Chr3:74602858-74602877 MsG0380015752.01.T01:CDS 40.0%
! TCTGTTTGTCTTTGAGGGAT+TGG - Chr3:74602928-74602947 None:intergenic 40.0%
! TTAAACGTGGTGATAACGAG+TGG + Chr3:74602857-74602876 MsG0380015752.01.T01:CDS 40.0%
! TTGTGAGAGTTTGAGTTTGG+TGG - Chr3:74601851-74601870 None:intergenic 40.0%
!! AATTGAAAGGGGGCTTGTTA+AGG + Chr3:74603017-74603036 MsG0380015752.01.T01:CDS 40.0%
!! AGGATGTGTTCTTTGGTTTG+AGG - Chr3:74602393-74602412 None:intergenic 40.0%
!! AGGTTTGCTATTAGAGAAGG+AGG + Chr3:74603459-74603478 MsG0380015752.01.T01:CDS 40.0%
!! AGTTGACCTTGTTGGTTTGA+GGG + Chr3:74603050-74603069 MsG0380015752.01.T01:CDS 40.0%
!! CTTCTGAAACATTTCCACTC+CGG - Chr3:74603097-74603116 None:intergenic 40.0%
!! GGTTTGCTATTAGAGAAGGA+GGG + Chr3:74603460-74603479 MsG0380015752.01.T01:CDS 40.0%
!! TAGTTGACCTTGTTGGTTTG+AGG + Chr3:74603049-74603068 MsG0380015752.01.T01:CDS 40.0%
!! TGTTCTTTGGTTTGAGGCAT+AGG - Chr3:74602387-74602406 None:intergenic 40.0%
!!! GTTTTGAAGAAGGAAGAAGG+TGG + Chr3:74603255-74603274 MsG0380015752.01.T01:CDS 40.0%
AAGCCCCCTTTCAATTCTTC+CGG - Chr3:74603013-74603032 None:intergenic 45.0%
ACAATCGGAATGTCATCTCC+AGG - Chr3:74602787-74602806 None:intergenic 45.0%
ACCATCTTAACACGATCACC+GGG - Chr3:74603399-74603418 None:intergenic 45.0%
ACCGCAGACAAGTTGTATGA+AGG - Chr3:74603624-74603643 None:intergenic 45.0%
ACTTGTGGAGCTTGAAGTTC+GGG + Chr3:74602738-74602757 MsG0380015752.01.T01:CDS 45.0%
AGCGAGAAGGATGTGTTCTT+TGG - Chr3:74602400-74602419 None:intergenic 45.0%
ATGGTTCCGATGTTGAGATG+AGG - Chr3:74602084-74602103 None:intergenic 45.0%
CACCATCTTAACACGATCAC+CGG - Chr3:74603400-74603419 None:intergenic 45.0%
CATCTCAACATCGGAACCAT+CGG + Chr3:74602084-74602103 MsG0380015752.01.T01:CDS 45.0%
CCCTTCATACAACTTGTCTG+CGG + Chr3:74603620-74603639 MsG0380015752.01.T01:three_prime_UTR 45.0%
CCGCAGACAAGTTGTATGAA+GGG - Chr3:74603623-74603642 None:intergenic 45.0%
CTCTCGTCTTACGAATTTCC+TGG + Chr3:74602766-74602785 MsG0380015752.01.T01:CDS 45.0%
GCCTCATATGCGTGCTATAA+TGG + Chr3:74603873-74603892 MsG0380015752.01.T01:three_prime_UTR 45.0%
GGCCTATAACCAGCAAAGAA+AGG - Chr3:74603291-74603310 None:intergenic 45.0%
GGGAGATCTGTTTGTCTTTG+AGG - Chr3:74602934-74602953 None:intergenic 45.0%
GGTGATGTAGTTGACCTTGT+TGG + Chr3:74603042-74603061 MsG0380015752.01.T01:CDS 45.0%
GGTTGTGTTCTTGAACAAGC+AGG + Chr3:74602687-74602706 MsG0380015752.01.T01:CDS 45.0%
TCGTTTCCCTCAAACCAACA+AGG - Chr3:74603059-74603078 None:intergenic 45.0%
TCTTTCGGAGTGAAGAGAAG+AGG - Chr3:74601736-74601755 None:intergenic 45.0%
TGAGGAGCTTCTTGAACTTG+TGG + Chr3:74602723-74602742 MsG0380015752.01.T01:CDS 45.0%
TGCCACCGGAAGAATTGAAA+GGG + Chr3:74603005-74603024 MsG0380015752.01.T01:CDS 45.0%
TTCTCTTCACTCCGAAAGAG+AGG + Chr3:74601737-74601756 MsG0380015752.01.T01:five_prime_UTR 45.0%
TTGACATAATCAGCGTGACC+GGG - Chr3:74602300-74602319 None:intergenic 45.0%
TTGCCACCGGAAGAATTGAA+AGG + Chr3:74603004-74603023 MsG0380015752.01.T01:CDS 45.0%
! AAGAGTGATGATGCAGCAAC+TGG - Chr3:74603542-74603561 None:intergenic 45.0%
! AGCGCTGAACCAGAAACAAT+CGG - Chr3:74602802-74602821 None:intergenic 45.0%
! ATTTTGGACGATGCTATGGC+TGG + Chr3:74603117-74603136 MsG0380015752.01.T01:CDS 45.0%
! CCCCTTTTTGCTAGCTATTG+AGG + Chr3:74602951-74602970 MsG0380015752.01.T01:CDS 45.0%
! GTGTTTTCAATCACTGGTCG+TGG + Chr3:74602976-74602995 MsG0380015752.01.T01:CDS 45.0%
! TATGCTCATGTTGATTGCCC+CGG + Chr3:74602279-74602298 MsG0380015752.01.T01:CDS 45.0%
! TTTTGCGCTCGAATTTGCCA+CGG - Chr3:74602059-74602078 None:intergenic 45.0%
!! AGGCGAGTTAGGGTTAGTTT+GGG - Chr3:74601940-74601959 None:intergenic 45.0%
!! ATTGGCGTTGGAAGCATTAG+TGG + Chr3:74602822-74602841 MsG0380015752.01.T01:CDS 45.0%
!! CGGTTAAAGTGGTTTTGCCA+TGG - Chr3:74602119-74602138 None:intergenic 45.0%
!! GAGTTAGGGTTAGTTTGGGA+CGG - Chr3:74601936-74601955 None:intergenic 45.0%
!! TGTTTCTGGTTCAGCGCTAT+TGG + Chr3:74602804-74602823 MsG0380015752.01.T01:CDS 45.0%
!! TTGTTGGTTTGAGGGAAACG+AGG + Chr3:74603058-74603077 MsG0380015752.01.T01:CDS 45.0%
AATGGAAGCGGAAGTGGTGA+AGG - Chr3:74601893-74601912 None:intergenic 50.0%
ACACATCCTTCTCGCTAAGC+AGG + Chr3:74602404-74602423 MsG0380015752.01.T01:CDS 50.0%
ACCTAGAGAAGCCAAAGCCA+TGG - Chr3:74602151-74602170 None:intergenic 50.0%
ATACCACGAGCACGTTCTTC+AGG - Chr3:74602213-74602232 None:intergenic 50.0%
ATTGGTGGAAGGGGAGGAAA+TGG - Chr3:74601911-74601930 None:intergenic 50.0%
CAAGGATGAGGAGTCGAAGA+TGG + Chr3:74603368-74603387 MsG0380015752.01.T01:CDS 50.0%
CCACCGGAAGAATTGAAAGG+GGG + Chr3:74603007-74603026 MsG0380015752.01.T01:CDS 50.0%
CGGTGATCGTGTTAAGATGG+TGG + Chr3:74603398-74603417 MsG0380015752.01.T01:CDS 50.0%
CTTGAACAAGCAGGACCAAG+TGG + Chr3:74602696-74602715 MsG0380015752.01.T01:CDS 50.0%
GAAGCTCCTCATCATCCACT+TGG - Chr3:74602714-74602733 None:intergenic 50.0%
GAGTGAGGAGTGATAGTTCC+AGG - Chr3:74603213-74603232 None:intergenic 50.0%
GCCACCGGAAGAATTGAAAG+GGG + Chr3:74603006-74603025 MsG0380015752.01.T01:CDS 50.0%
GGTTGAACTCATTGTCCCTG+TGG + Chr3:74603419-74603438 MsG0380015752.01.T01:CDS 50.0%
GTCCCTGTGGCTATTGAACA+AGG + Chr3:74603432-74603451 MsG0380015752.01.T01:CDS 50.0%
TCCGATAACACCAGCTCCAA+CGG - Chr3:74603490-74603509 None:intergenic 50.0%
TGAAGCAAAGTAGTGCACCG+CGG + Chr3:74601622-74601641 MsG0380015752.01.T01:five_prime_UTR 50.0%
TGACATAATCAGCGTGACCG+GGG - Chr3:74602299-74602318 None:intergenic 50.0%
TTTAACCGCTGCTCTCACCA+TGG + Chr3:74602131-74602150 MsG0380015752.01.T01:CDS 50.0%
TTTGCGCTCGAATTTGCCAC+GGG - Chr3:74602058-74602077 None:intergenic 50.0%
! GCTATGGCTGGTGATAACGT+GGG + Chr3:74603129-74603148 MsG0380015752.01.T01:CDS 50.0%
! GGTTTGAGGCATAGGACCAT+CGG - Chr3:74602379-74602398 None:intergenic 50.0%
! TAGTTTGGGACGGAGATTGG+TGG - Chr3:74601926-74601945 None:intergenic 50.0%
! TGCTATGGCTGGTGATAACG+TGG + Chr3:74603128-74603147 MsG0380015752.01.T01:CDS 50.0%
!! AACGTGGGTTTGTTGCTGAG+AGG + Chr3:74603144-74603163 MsG0380015752.01.T01:CDS 50.0%
!! ACCATGGCTTTGGCTTCTCT+AGG + Chr3:74602147-74602166 MsG0380015752.01.T01:CDS 50.0%
!! ACCGTTGGAGCTGGTGTTAT+CGG + Chr3:74603486-74603505 MsG0380015752.01.T01:CDS 50.0%
!! GAAAGGGGGCTTGTTAAGGT+TGG + Chr3:74603021-74603040 MsG0380015752.01.T01:CDS 50.0%
!! GAGGCGAGTTAGGGTTAGTT+TGG - Chr3:74601941-74601960 None:intergenic 50.0%
!! GATTACTGGTGCTGCTCAGA+TGG + Chr3:74602326-74602345 MsG0380015752.01.T01:CDS 50.0%
!! GGTTAGTTTGGGACGGAGAT+TGG - Chr3:74601929-74601948 None:intergenic 50.0%
!! TGGTGGTTGGTTTGGAGGAA+GGG - Chr3:74602005-74602024 None:intergenic 50.0%
!! TTAGGTTGGTGTTCCGAGTG+TGG + Chr3:74602666-74602685 MsG0380015752.01.T01:intron 50.0%
AAGCGGAAGTGGTGAAGGTG+TGG - Chr3:74601888-74601907 None:intergenic 55.0%
AGAGAAGGAGGGAAGACCGT+TGG + Chr3:74603471-74603490 MsG0380015752.01.T01:CDS 55.0%
AGGAGGAAGAGAGGCGAGTT+AGG - Chr3:74601951-74601970 None:intergenic 55.0%
CAAAGCCATGGTGAGAGCAG+CGG - Chr3:74602139-74602158 None:intergenic 55.0%
CCCCCTTTCAATTCTTCCGG+TGG - Chr3:74603010-74603029 None:intergenic 55.0%
CGCGTCACTCCAAAAGTGAG+AGG + Chr3:74601645-74601664 MsG0380015752.01.T01:five_prime_UTR 55.0%
GATTGTGGAGGGGTTGAGGA+AGG - Chr3:74601971-74601990 None:intergenic 55.0%
GCAGGACCAAGTGGATGATG+AGG + Chr3:74602705-74602724 MsG0380015752.01.T01:CDS 55.0%
GCCCGGTGATCGTGTTAAGA+TGG + Chr3:74603395-74603414 MsG0380015752.01.T01:CDS 55.0%
GGAAGGGGAGGAAATGGAAG+CGG - Chr3:74601905-74601924 None:intergenic 55.0%
GGAGGAAATGGAAGCGGAAG+TGG - Chr3:74601899-74601918 None:intergenic 55.0%
GGAGGAAGAGAGGCGAGTTA+GGG - Chr3:74601950-74601969 None:intergenic 55.0%
GGCGCTATTCTCGTTGTCTC+CGG + Chr3:74602351-74602370 MsG0380015752.01.T01:CDS 55.0%
GGTGAGAGCAGCGGTTAAAG+TGG - Chr3:74602130-74602149 None:intergenic 55.0%
GGTTGAGGAAGGAGGAAGAG+AGG - Chr3:74601960-74601979 None:intergenic 55.0%
GTGAGGTGGAGGATTGTGGA+GGG - Chr3:74601982-74602001 None:intergenic 55.0%
TGAGGTGGAGGATTGTGGAG+GGG - Chr3:74601981-74602000 None:intergenic 55.0%
TGGGACGGAGATTGGTGGAA+GGG - Chr3:74601921-74601940 None:intergenic 55.0%
TGGTTCAGCGCTATTGGCGT+TGG + Chr3:74602810-74602829 MsG0380015752.01.T01:CDS 55.0%
TTGGGACGGAGATTGGTGGA+AGG - Chr3:74601922-74601941 None:intergenic 55.0%
! ACGTGGTGATAACGAGTGGG+TGG + Chr3:74602861-74602880 MsG0380015752.01.T01:CDS 55.0%
! AGCGGAAGTGGTGAAGGTGT+GGG - Chr3:74601887-74601906 None:intergenic 55.0%
! GAGTCGAAGATGGTGATGCC+CGG + Chr3:74603378-74603397 MsG0380015752.01.T01:CDS 55.0%
! TGAAGGTGTGGGTGTGTGGT+GGG - Chr3:74601876-74601895 None:intergenic 55.0%
!! ACGAGGAGCACTACAGTGAC+CGG + Chr3:74603075-74603094 MsG0380015752.01.T01:CDS 55.0%
!! ACTGGTGCTGCTCAGATGGA+CGG + Chr3:74602330-74602349 MsG0380015752.01.T01:CDS 55.0%
!! GGTGGTTGGTTTGGAGGAAG+GGG - Chr3:74602004-74602023 None:intergenic 55.0%
!! GTGGTGGTTGGTTTGGAGGA+AGG - Chr3:74602006-74602025 None:intergenic 55.0%
!! TGGTTTTGCCATGGTCGACG+TGG - Chr3:74602110-74602129 None:intergenic 55.0%
!! TTGGTTTGGAGGAAGGGGTG+AGG - Chr3:74601999-74602018 None:intergenic 55.0%
!!! GGGATGGTTTTGGCTAAGCC+TGG + Chr3:74603192-74603211 MsG0380015752.01.T01:CDS 55.0%
ACGGAGATTGGTGGAAGGGG+AGG - Chr3:74601917-74601936 None:intergenic 60.0%
AGGCATAGGACCATCGGCAC+CGG - Chr3:74602373-74602392 None:intergenic 60.0%
AGGGGTGAGGTGGAGGATTG+TGG - Chr3:74601986-74602005 None:intergenic 60.0%
CGCTGCTCTCACCATGGCTT+TGG + Chr3:74602137-74602156 MsG0380015752.01.T01:CDS 60.0%
GAGCACTACAGTGACCGGAG+TGG + Chr3:74603080-74603099 MsG0380015752.01.T01:CDS 60.0%
GCTCCTGAAGAACGTGCTCG+TGG + Chr3:74602207-74602226 MsG0380015752.01.T01:CDS 60.0%
GGAGGATTGTGGAGGGGTTG+AGG - Chr3:74601975-74601994 None:intergenic 60.0%
GGGACGGAGATTGGTGGAAG+GGG - Chr3:74601920-74601939 None:intergenic 60.0%
GGTCGTGGAACAGTTGCCAC+CGG + Chr3:74602991-74603010 MsG0380015752.01.T01:CDS 60.0%
GGTGAGGTGGAGGATTGTGG+AGG - Chr3:74601983-74602002 None:intergenic 60.0%
GTTTGGAGGAAGGGGTGAGG+TGG - Chr3:74601996-74602015 None:intergenic 60.0%
TGTGGAGGGGTTGAGGAAGG+AGG - Chr3:74601968-74601987 None:intergenic 60.0%
! GGAGCGAGTGGTGGTTGGTT+TGG - Chr3:74602013-74602032 None:intergenic 60.0%
! GTGAAGGTGTGGGTGTGTGG+TGG - Chr3:74601877-74601896 None:intergenic 60.0%
! GTGGTGAAGGTGTGGGTGTG+TGG - Chr3:74601880-74601899 None:intergenic 60.0%
!! GCGAGTGGTGGTTGGTTTGG+AGG - Chr3:74602010-74602029 None:intergenic 60.0%
!!! ACTTTTGGAGTGACGCGCCG+CGG - Chr3:74601642-74601661 None:intergenic 60.0%
ACCATCGGCCACGTCGACCA+TGG + Chr3:74602099-74602118 MsG0380015752.01.T01:CDS 65.0%
CGAATTTGCCACGGGCGGCA+CGG - Chr3:74602050-74602069 None:intergenic 65.0%
GAAAGGGGAGGAGCGAGTGG+TGG - Chr3:74602022-74602041 None:intergenic 65.0%
GCGCTCGAATTTGCCACGGG+CGG - Chr3:74602055-74602074 None:intergenic 65.0%
GGAGGGAAGACCGTTGGAGC+TGG + Chr3:74603477-74603496 MsG0380015752.01.T01:CDS 65.0%
GGTGAAAGGGGAGGAGCGAG+TGG - Chr3:74602025-74602044 None:intergenic 65.0%
TGGAGGAAGGGGTGAGGTGG+AGG - Chr3:74601993-74602012 None:intergenic 65.0%
! CTCGTTGTCTCCGGTGCCGA+TGG + Chr3:74602360-74602379 MsG0380015752.01.T01:CDS 65.0%
GCCATGGTCGACGTGGCCGA+TGG - Chr3:74602103-74602122 None:intergenic 70.0%
GGCACGGACGGTGAAAGGGG+AGG - Chr3:74602034-74602053 None:intergenic 70.0%
GGCGGCACGGACGGTGAAAG+GGG - Chr3:74602037-74602056 None:intergenic 70.0%
GGGCGGCACGGACGGTGAAA+GGG - Chr3:74602038-74602057 None:intergenic 70.0%
GGGGAGGAGCGAGTGGTGGT+TGG - Chr3:74602018-74602037 None:intergenic 70.0%
TTTGCCACGGGCGGCACGGA+CGG - Chr3:74602046-74602065 None:intergenic 70.0%
CGGGCGGCACGGACGGTGAA+AGG - Chr3:74602039-74602058 None:intergenic 75.0%
TTCACCGTCCGTGCCGCCCG+TGG + Chr3:74602039-74602058 MsG0380015752.01.T01:CDS 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74601544 74603935 74601544 ID=MsG0380015752.01;Name=MsG0380015752.01
Chr3 mRNA 74601544 74603935 74601544 ID=MsG0380015752.01.T01;Parent=MsG0380015752.01;Name=MsG0380015752.01.T01;_AED=0.47;_eAED=0.47;_QI=276|1|1|1|1|1|2|411|486
Chr3 exon 74601544 74602425 74601544 ID=MsG0380015752.01.T01:exon:24441;Parent=MsG0380015752.01.T01
Chr3 exon 74602670 74603935 74602670 ID=MsG0380015752.01.T01:exon:24442;Parent=MsG0380015752.01.T01
Chr3 five_prime_UTR 74601544 74601819 74601544 ID=MsG0380015752.01.T01:five_prime_utr;Parent=MsG0380015752.01.T01
Chr3 CDS 74601820 74602425 74601820 ID=MsG0380015752.01.T01:cds;Parent=MsG0380015752.01.T01
Chr3 CDS 74602670 74603524 74602670 ID=MsG0380015752.01.T01:cds;Parent=MsG0380015752.01.T01
Chr3 three_prime_UTR 74603525 74603935 74603525 ID=MsG0380015752.01.T01:three_prime_utr;Parent=MsG0380015752.01.T01
Gene Sequence

>MsG0380015752.01.T01

ATGGCAATTTCAATTTCTTCTTCATCTTCCACCAAACTCAAACTCTCACAACACCCACCACACACCCACACCTTCACCACTTCCGCTTCCATTTCCTCCCCTTCCACCAATCTCCGTCCCAAACTAACCCTAACTCGCCTCTCTTCCTCCTTCCTCAACCCCTCCACAATCCTCCACCTCACCCCTTCCTCCAAACCAACCACCACTCGCTCCTCCCCTTTCACCGTCCGTGCCGCCCGTGGCAAATTCGAGCGCAAAAAGCCTCATCTCAACATCGGAACCATCGGCCACGTCGACCATGGCAAAACCACTTTAACCGCTGCTCTCACCATGGCTTTGGCTTCTCTAGGTAACAGTGCCCCTAAAAAATACGATGAAATTGACGCTGCTCCTGAAGAACGTGCTCGTGGTATTACAATTAATACTGCTACTGTTGAATATGAGACTGAGACTCGTCATTATGCTCATGTTGATTGCCCCGGTCACGCTGATTATGTCAAAAATATGATTACTGGTGCTGCTCAGATGGACGGCGCTATTCTCGTTGTCTCCGGTGCCGATGGTCCTATGCCTCAAACCAAAGAACACATCCTTCTCGCTAAGCAGGTTGGTGTTCCGAGTGTGGTTGTGTTCTTGAACAAGCAGGACCAAGTGGATGATGAGGAGCTTCTTGAACTTGTGGAGCTTGAAGTTCGGGAGCTACTCTCGTCTTACGAATTTCCTGGAGATGACATTCCGATTGTTTCTGGTTCAGCGCTATTGGCGTTGGAAGCATTAGTGGCAAACCCTACTATTAAACGTGGTGATAACGAGTGGGTGGATAAGATTTATAAACTTATGGATGAAGTTGACAACTATATACCAATCCCTCAAAGACAAACAGATCTCCCCTTTTTGCTAGCTATTGAGGATGTGTTTTCAATCACTGGTCGTGGAACAGTTGCCACCGGAAGAATTGAAAGGGGGCTTGTTAAGGTTGGTGATGTAGTTGACCTTGTTGGTTTGAGGGAAACGAGGAGCACTACAGTGACCGGAGTGGAAATGTTTCAGAAGATTTTGGACGATGCTATGGCTGGTGATAACGTGGGTTTGTTGCTGAGAGGTGTTCAGAAGATTGATATTCAAAGAGGGATGGTTTTGGCTAAGCCTGGAACTATCACTCCTCACTCTAAGTTTGAATGTATTGTGTATGTTTTGAAGAAGGAAGAAGGTGGAAGACATTCACCTTTCTTTGCTGGTTATAGGCCTCAGTTTTACATGAGAACCACAGATGTTACCGGAAAAGTTACATCTATCATGAATGACAAGGATGAGGAGTCGAAGATGGTGATGCCCGGTGATCGTGTTAAGATGGTGGTTGAACTCATTGTCCCTGTGGCTATTGAACAAGGAATGAGGTTTGCTATTAGAGAAGGAGGGAAGACCGTTGGAGCTGGTGTTATCGGAGCTATCATTGAGTGA

Protein sequence

>MsG0380015752.01.T01

MAISISSSSSTKLKLSQHPPHTHTFTTSASISSPSTNLRPKLTLTRLSSSFLNPSTILHLTPSSKPTTTRSSPFTVRAARGKFERKKPHLNIGTIGHVDHGKTTLTAALTMALASLGNSAPKKYDEIDAAPEERARGITINTATVEYETETRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPSVVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIVSGSALLALEALVANPTIKRGDNEWVDKIYKLMDEVDNYIPIPQRQTDLPFLLAIEDVFSITGRGTVATGRIERGLVKVGDVVDLVGLRETRSTTVTGVEMFQKILDDAMAGDNVGLLLRGVQKIDIQRGMVLAKPGTITPHSKFECIVYVLKKEEGGRHSPFFAGYRPQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVAIEQGMRFAIREGGKTVGAGVIGAIIE*