AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280007136.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007136.01.T01 MTR_2g021255 89.979 469 6 2 1 469 1 428 0.0 853
MsG0280007136.01.T01 MTR_2g021242 86.354 469 23 2 1 469 1 428 0.0 823
MsG0280007136.01.T01 MTR_2g021255 88.915 424 6 2 1 424 1 383 0.0 764
MsG0280007136.01.T01 MTR_6g071070 70.025 397 78 2 57 453 1 356 0.0 583
MsG0280007136.01.T01 MTR_3g065250 70.277 397 77 2 57 453 1 356 0.0 582
MsG0280007136.01.T01 MTR_5g077950 66.497 394 91 2 60 453 5 357 0.0 551
MsG0280007136.01.T01 MTR_8g062840 70.755 106 18 2 354 459 1 93 1.85e-38 136
MsG0280007136.01.T01 MTR_2g021248 54.000 150 18 4 313 461 9 108 1.31e-33 129
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280007136.01.T01 AT5G35630 74.364 472 76 5 1 469 1 430 0.0 709
MsG0280007136.01.T01 AT5G35630 74.364 472 76 5 1 469 1 430 0.0 709
MsG0280007136.01.T01 AT5G35630 74.364 472 76 5 1 469 1 430 0.0 709
MsG0280007136.01.T01 AT1G66200 72.081 394 78 2 60 453 4 365 0.0 593
MsG0280007136.01.T01 AT5G16570 70.781 397 75 2 57 453 1 356 0.0 586
MsG0280007136.01.T01 AT5G37600 70.529 397 76 2 57 453 1 356 0.0 586
MsG0280007136.01.T01 AT1G66200 71.285 397 73 2 57 453 1 356 0.0 585
MsG0280007136.01.T01 AT3G17820 68.020 394 85 2 57 450 1 353 0.0 558
MsG0280007136.01.T01 AT1G48470 66.227 379 87 2 72 450 16 353 0.0 536
MsG0280007136.01.T01 AT1G66200 67.577 293 54 2 57 349 1 252 1.12e-140 404
MsG0280007136.01.T01 AT5G16570 65.714 280 55 2 57 336 1 239 4.52e-131 379

Find 156 sgRNAs with CRISPR-Local

Find 274 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTTCTCTTGGTGCTCTTTA+AGG 0.126003 2:-11083823 MsG0280007136.01.T01:five_prime_UTR
GCAGAACATGGCACAGATTT+TGG 0.155664 2:-11082531 MsG0280007136.01.T01:intron
GGTTGAGGATTTACTTAATT+TGG 0.180473 2:-11082348 MsG0280007136.01.T01:CDS
CCGCGGTGGTAACAACATTT+TGG 0.220354 2:-11081564 MsG0280007136.01.T01:CDS
CTCACCTTTGCCATTCTTCT+CGG 0.229339 2:+11079781 None:intergenic
TTGAAGCTGGTGATCATATC+TGG 0.250556 2:-11080576 MsG0280007136.01.T01:CDS
TATAGTACCTCAATTGGTTT+TGG 0.253546 2:+11080326 None:intergenic
ATATGTGGTGACAGCCTTAT+TGG 0.284085 2:-11079508 MsG0280007136.01.T01:CDS
CACAACTCTCACACTCTATA+TGG 0.285360 2:-11083727 MsG0280007136.01.T01:five_prime_UTR
AGTCTAAATCTATTGATTAA+TGG 0.290344 2:-11079415 MsG0280007136.01.T01:exon
GCCCCGGCGGCGCAGTAATA+AGG 0.290627 2:+11081000 None:intergenic
GCTTTATGTCTCTTATTTGT+AGG 0.306213 2:+11081413 None:intergenic
CTTCTCTTGGTGCTCTTTAA+GGG 0.310657 2:-11083822 MsG0280007136.01.T01:five_prime_UTR
ATCAAAGATGTGGAGTTCTT+TGG 0.311844 2:-11082447 MsG0280007136.01.T01:CDS
TGCTGCAGTTTGTGAGGTGC+TGG 0.317755 2:-11079383 MsG0280007136.01.T01:three_prime_UTR
ATTTCATAATATTTGCATTT+CGG 0.319234 2:+11081501 None:intergenic
TTCACCGAGGACATTTATAA+TGG 0.329802 2:-11079102 MsG0280007136.01.T01:three_prime_UTR
TATATTATGAAGATATTGTT+TGG 0.331941 2:-11079330 MsG0280007136.01.T01:three_prime_UTR
CATAATATAATAAATCTAAA+TGG 0.338711 2:+11079344 None:intergenic
AGCTCAGAGGGATGCTCAAC+AGG 0.340393 2:+11081774 None:intergenic
AAAGCTGCAAACTTTGGAAA+TGG 0.342244 2:+11083668 None:intergenic
CAGGATGTCACACCAATTAC+AGG 0.343535 2:-11080214 MsG0280007136.01.T01:intron
GGAATTTCAGCCTCAACCTT+TGG 0.352234 2:+11081371 None:intergenic
TTTAACCTTGACAGGGTGAT+TGG 0.356608 2:-11080244 MsG0280007136.01.T01:intron
TGGCCTGTTGGTGGCTATCC+TGG 0.366008 2:-11081128 MsG0280007136.01.T01:CDS
TAATGTACTCTCTGCCAATA+AGG 0.366195 2:+11079494 None:intergenic
TTTCACATCTGTTTGAAGTA+AGG 0.375190 2:+11081163 None:intergenic
TCAACTCTGGCACCATCAAC+AGG 0.381942 2:-11082370 MsG0280007136.01.T01:CDS
GAATTTCAGCCTCAACCTTT+GGG 0.391287 2:+11081372 None:intergenic
AATAAGGCTGTCACCACATA+TGG 0.395016 2:+11079510 None:intergenic
TGTCTTGATTGCAGGTTACT+TGG 0.398318 2:-11079562 MsG0280007136.01.T01:intron
TAAATCCTCAACCCTGTTGA+TGG 0.404683 2:+11082358 None:intergenic
AAGCATTATAGTACCTCAAT+TGG 0.404986 2:+11080320 None:intergenic
GGAAATGAGAGAAGGTTGAC+AGG 0.416285 2:-11079993 MsG0280007136.01.T01:CDS
GGTCCTTATTACTGCGCCGC+CGG 0.416746 2:-11081003 MsG0280007136.01.T01:CDS
CTTGTCTGACATTGTGTAGA+AGG 0.424180 2:+11082506 None:intergenic
ACTAGCACATACACAAATAC+TGG 0.424644 2:+11082030 None:intergenic
ACAGATGTGAAATGGCCATT+AGG 0.428436 2:-11081152 MsG0280007136.01.T01:CDS
GTCCTTATTACTGCGCCGCC+GGG 0.429665 2:-11081002 MsG0280007136.01.T01:CDS
ATGCTCAACAGGCTTTGATA+TGG 0.434596 2:+11081785 None:intergenic
GTGAGAGTTGTGTAAAATAA+AGG 0.435343 2:+11083738 None:intergenic
GTGATCATATCTGGGCTTCA+AGG 0.435881 2:-11080567 MsG0280007136.01.T01:CDS
GCATAATTGCTGAGTACATC+TGG 0.436205 2:-11082304 MsG0280007136.01.T01:intron
TGAAACAGGATTGGTGGAAC+AGG 0.436884 2:-11081951 MsG0280007136.01.T01:intron
AAGCTGCAAACTTTGGAAAT+GGG 0.438166 2:+11083669 None:intergenic
TACTTCAAACAGATGTGAAA+TGG 0.440857 2:-11081160 MsG0280007136.01.T01:CDS
GCCGGGGCAGATAAGTCATT+TGG 0.440872 2:-11080985 MsG0280007136.01.T01:CDS
GAGGGAAGATGGAGGATTTG+AGG 0.444775 2:-11080081 MsG0280007136.01.T01:CDS
TACAAGGCTTGCTTATATGC+TGG 0.449645 2:-11080940 MsG0280007136.01.T01:CDS
ACAAAGAGCATGAGGGAAGA+TGG 0.452148 2:-11080092 MsG0280007136.01.T01:CDS
CTTTATGTCTCTTATTTGTA+GGG 0.456048 2:+11081414 None:intergenic
TGTGTAAAATAAAGGTTGGT+TGG 0.457964 2:+11083746 None:intergenic
TGTCTCTTATTTGTAGGGAT+AGG 0.465641 2:+11081419 None:intergenic
TTATAAGTCCAAGCTTCTCT+TGG 0.474113 2:-11083835 MsG0280007136.01.T01:five_prime_UTR
GCAATTATGCTGTCAGTGAA+TGG 0.479383 2:+11082317 None:intergenic
GGCAGAGAGTACATTATTGT+GGG 0.479550 2:-11079487 MsG0280007136.01.T01:CDS
ACCAATGGAGAGGTTATGCC+TGG 0.479715 2:-11080901 MsG0280007136.01.T01:CDS
CCACCAACAGGCCAACCTAA+TGG 0.483275 2:+11081137 None:intergenic
CAATGTGAACCTTGTGGCGA+AGG 0.487159 2:+11080030 None:intergenic
AAGGTTCACATTGAAGCATA+TGG 0.487181 2:-11080020 MsG0280007136.01.T01:CDS
GGCTGTGTTTGCATGTGGTA+TGG 0.491287 2:-11079238 MsG0280007136.01.T01:three_prime_UTR
AACAAGAAATTTACCTGGCC+AGG 0.491477 2:+11080883 None:intergenic
TTGCAGGTTACTTGGAAGAC+AGG 0.494206 2:-11079554 MsG0280007136.01.T01:intron
TTGGCTATTGTAATAACGAT+AGG 0.500209 2:+11083765 None:intergenic
TGGTGGCTATCCTGGTCCTC+AGG 0.500616 2:-11081120 MsG0280007136.01.T01:intron
CCATTAGGTTGGCCTGTTGG+TGG 0.503990 2:-11081137 MsG0280007136.01.T01:CDS
GGACCAGGATAGCCACCAAC+AGG 0.504091 2:+11081125 None:intergenic
CAGGCGTCCGGCTTCAAACA+TGG 0.506417 2:-11079535 MsG0280007136.01.T01:CDS
TGGCAGAGAGTACATTATTG+TGG 0.507952 2:-11079488 MsG0280007136.01.T01:CDS
TGGCTATTGTAATAACGATA+GGG 0.508666 2:+11083766 None:intergenic
AGGCTGCCATGCCTAGTCAT+TGG 0.511575 2:-11079300 MsG0280007136.01.T01:three_prime_UTR
AGAGTAATGGCAATCAACTC+TGG 0.512452 2:-11082383 MsG0280007136.01.T01:CDS
TTCTGCTAAATTCAGAGTAA+TGG 0.515964 2:-11082396 MsG0280007136.01.T01:CDS
TGGAGAGGTTATGCCTGGCC+AGG 0.526189 2:-11080896 MsG0280007136.01.T01:intron
CTTCAGTAACCCAAAGGTTG+AGG 0.530081 2:-11081381 MsG0280007136.01.T01:CDS
GCTGCAGTTTGTGAGGTGCT+GGG 0.533336 2:-11079382 MsG0280007136.01.T01:three_prime_UTR
AGGATTTGAGGTAATAAAGA+AGG 0.535229 2:-11080069 MsG0280007136.01.T01:CDS
GGAAGAGACACCGAGAAGAA+TGG 0.536053 2:-11079791 MsG0280007136.01.T01:CDS
CTCCACATCTTTGATGAGAT+CGG 0.538614 2:+11082455 None:intergenic
TGATGAGATCGGAGTTGCAA+GGG 0.539695 2:+11082466 None:intergenic
TTACTTGGAAGACAGGCGTC+CGG 0.542791 2:-11079547 MsG0280007136.01.T01:CDS
TCTCGGTGTCTCTTCCCACA+CGG 0.544625 2:+11079798 None:intergenic
TTGAATAGCTTCTCTTTCTG+AGG 0.548315 2:+11079128 None:intergenic
TGGCACCATCAACAGGGTTG+AGG 0.550831 2:-11082363 MsG0280007136.01.T01:CDS
GGATCTTTGAAAATTGCTTG+AGG 0.551311 2:+11081590 None:intergenic
TCTAGCACTGGACAAGCCCC+TGG 0.553808 2:-11081729 MsG0280007136.01.T01:CDS
TGAAGCTGGTGATCATATCT+GGG 0.554602 2:-11080575 MsG0280007136.01.T01:CDS
TTGATGAGATCGGAGTTGCA+AGG 0.555124 2:+11082465 None:intergenic
TATTCCATTATAAATGTCCT+CGG 0.556627 2:+11079098 None:intergenic
ATCACTTCACTATCTTCACC+AGG 0.558839 2:+11081711 None:intergenic
AACTATGACGGATCTAGCAC+TGG 0.559817 2:-11081741 MsG0280007136.01.T01:CDS
CACATTGAAGCATATGGAGA+AGG 0.559868 2:-11080014 MsG0280007136.01.T01:CDS
GAATTTATCCCTTCGCCACA+AGG 0.561809 2:-11080039 MsG0280007136.01.T01:CDS
GATCCGTCATAGTTCCACTT+AGG 0.563451 2:+11081750 None:intergenic
CCTTGATCCAAAACCAATTG+AGG 0.564795 2:-11080333 MsG0280007136.01.T01:intron
TATATCTGATGCTCATTACA+AGG 0.567381 2:-11080956 MsG0280007136.01.T01:CDS
AGAGCTTCAGCCTCTAGAGT+TGG 0.568683 2:+11079462 None:intergenic
AAAGAGCACCAAGAGAAGCT+TGG 0.568886 2:+11083827 None:intergenic
TTGTATATCAGATATTTCGT+TGG 0.569347 2:-11079259 MsG0280007136.01.T01:three_prime_UTR
TTCAAACATGGATCCATATG+TGG 0.574208 2:-11079523 MsG0280007136.01.T01:CDS
CCAGCTTCAATACCTACACT+AGG 0.574753 2:+11080589 None:intergenic
CAGGGTGATTGGAATGGTGC+AGG 0.575034 2:-11080233 MsG0280007136.01.T01:CDS
CTCCGATCTCATCAAAGATG+TGG 0.575385 2:-11082457 MsG0280007136.01.T01:CDS
TGGCCATTAGGTTGGCCTGT+TGG 0.578206 2:-11081140 MsG0280007136.01.T01:CDS
GCCAGGCATAACCTCTCCAT+TGG 0.582272 2:+11080900 None:intergenic
TATGGATCCATGTTTGAAGC+CGG 0.582314 2:+11079528 None:intergenic
ATGGAGAAGGAAATGAGAGA+AGG 0.582440 2:-11080001 MsG0280007136.01.T01:CDS
ACCAAATGACTTATCTGCCC+CGG 0.584020 2:+11080984 None:intergenic
CTTCCTAAGTGGAACTATGA+CGG 0.584162 2:-11081753 MsG0280007136.01.T01:CDS
AATGGTATTACCTGAGGACC+AGG 0.584702 2:+11081110 None:intergenic
CAGCACTGCTGCAGTTTGTG+AGG 0.584949 2:-11079389 MsG0280007136.01.T01:three_prime_UTR
ATTAACATCAGTGGTACCAA+TGG 0.585033 2:-11080916 MsG0280007136.01.T01:CDS
CCAAGAAAATGTGTTGATGC+TGG 0.585913 2:+11079956 None:intergenic
ATGTGAAATGGCCATTAGGT+TGG 0.587256 2:-11081148 MsG0280007136.01.T01:CDS
TCATAACCAATGACTAGGCA+TGG 0.596208 2:+11079294 None:intergenic
TATCAAGTTGGTCCTAGTGT+AGG 0.601050 2:-11080601 MsG0280007136.01.T01:CDS
AATGTGAACCTTGTGGCGAA+GGG 0.601308 2:+11080031 None:intergenic
ATCCCTCTGAGCTTCCTAAG+TGG 0.601311 2:-11081764 MsG0280007136.01.T01:CDS
ATGTTGTTACCACCGCGGAA+AGG 0.604039 2:+11081569 None:intergenic
TCCTTATTACTGCGCCGCCG+GGG 0.605888 2:-11081001 MsG0280007136.01.T01:CDS
GGCTATTGTAATAACGATAG+GGG 0.606072 2:+11083767 None:intergenic
TCATCTCATAACCAATGACT+AGG 0.607836 2:+11079289 None:intergenic
TTGCAGTGGGAGTATCAAGT+TGG 0.608671 2:-11080613 MsG0280007136.01.T01:intron
CAGAGAATTACTGAACAAGC+TGG 0.610576 2:-11080368 MsG0280007136.01.T01:CDS
TTCAAAGATCCTTTCCGCGG+TGG 0.612743 2:-11081578 MsG0280007136.01.T01:CDS
TTCCACTTAGGAAGCTCAGA+GGG 0.616333 2:+11081762 None:intergenic
GTAGGGATAGGCTCACCTTG+TGG 0.616926 2:+11081431 None:intergenic
CCACACGGATTGAGCATCCA+CGG 0.619918 2:+11079813 None:intergenic
AGATATTGTTTGGACAAATG+AGG 0.620103 2:-11079320 MsG0280007136.01.T01:three_prime_UTR
TCGTTGGCTGTGTTTGCATG+TGG 0.621670 2:-11079243 MsG0280007136.01.T01:three_prime_UTR
CCTAGTGTAGGTATTGAAGC+TGG 0.623241 2:-11080589 MsG0280007136.01.T01:CDS
GATGAGATCGGAGTTGCAAG+GGG 0.624226 2:+11082467 None:intergenic
GACACCGAGAAGAATGGCAA+AGG 0.626801 2:-11079785 MsG0280007136.01.T01:intron
CTATATGGTTCAGTGACACA+AGG 0.630105 2:-11083712 MsG0280007136.01.T01:five_prime_UTR
CGATAGGGGTGTGCTATGAG+TGG 0.630490 2:+11083781 None:intergenic
CCTTGACAGGGTGATTGGAA+TGG 0.631330 2:-11080239 MsG0280007136.01.T01:intron
CACTTCACTATCTTCACCAG+GGG 0.632006 2:+11081713 None:intergenic
CGTGGATGCTCAATCCGTGT+GGG 0.632481 2:-11079812 MsG0280007136.01.T01:CDS
CCGTGGATGCTCAATCCGTG+TGG 0.633763 2:-11079813 MsG0280007136.01.T01:CDS
TGAAATCTTCAGTAACCCAA+AGG 0.645974 2:-11081387 MsG0280007136.01.T01:CDS
GGCTTCAAGGTACATCCTTG+AGG 0.647096 2:-11080554 MsG0280007136.01.T01:intron
TATGCTGGAATTAACATCAG+TGG 0.654120 2:-11080925 MsG0280007136.01.T01:CDS
AAGAGCATGAGGGAAGATGG+AGG 0.657505 2:-11080089 MsG0280007136.01.T01:CDS
CAACTCTGGCACCATCAACA+GGG 0.659254 2:-11082369 MsG0280007136.01.T01:CDS
TGCGATGCTTATACACCACA+AGG 0.660080 2:-11081446 MsG0280007136.01.T01:CDS
ATTGTGGGAACCAACTCTAG+AGG 0.660710 2:-11079472 MsG0280007136.01.T01:CDS
TTTCAGTACAAAGAGCATGA+GGG 0.669238 2:-11080099 MsG0280007136.01.T01:intron
CATCAGTGGTACCAATGGAG+AGG 0.669594 2:-11080911 MsG0280007136.01.T01:CDS
ATGCAGGGAGTGGCTAACCG+TGG 0.669725 2:-11079830 MsG0280007136.01.T01:intron
GAGTTGTGTAAAATAAAGGT+TGG 0.680782 2:+11083742 None:intergenic
TCACTTCACTATCTTCACCA+GGG 0.684268 2:+11081712 None:intergenic
AGGTTGAGGCTGAAATTCCG+TGG 0.684939 2:-11081367 MsG0280007136.01.T01:intron
AAATGACTTATCTGCCCCGG+CGG 0.706244 2:+11080987 None:intergenic
CCAAAATGTTGTTACCACCG+CGG 0.710389 2:+11081564 None:intergenic
GTTCCACTTAGGAAGCTCAG+AGG 0.715738 2:+11081761 None:intergenic
ATGCTTCAATGTGAACCTTG+TGG 0.722374 2:+11080024 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTTATAATATTTATCAACT+TGG + Chr2:11082779-11082798 None:intergenic 10.0%
!! CATAATATAATAAATCTAAA+TGG + Chr2:11083561-11083580 None:intergenic 10.0%
!! TATGTATTTATAATTTGATT+AGG + Chr2:11080665-11080684 None:intergenic 10.0%
!!! ATTAATTTTACTAATTGTTT+TGG - Chr2:11082634-11082653 MsG0280007136.01.T01:intron 10.0%
!! AGAATAAAATACATTCATAT+AGG + Chr2:11081093-11081112 None:intergenic 15.0%
!! ATTTCATAATATTTGCATTT+CGG + Chr2:11081404-11081423 None:intergenic 15.0%
!! TAGTAAAATTAATTAGCATA+AGG + Chr2:11082627-11082646 None:intergenic 15.0%
!! TATATTATGAAGATATTGTT+TGG - Chr2:11083572-11083591 MsG0280007136.01.T01:intron 15.0%
!!! AAAATGCTTTTATTTATGTT+AGG - Chr2:11080212-11080231 MsG0280007136.01.T01:intron 15.0%
!!! AAATCTCAACATTTAATTTT+TGG - Chr2:11079420-11079439 MsG0280007136.01.T01:exon 15.0%
!!! GACTTATAATATTTTAGATA+AGG + Chr2:11079056-11079075 None:intergenic 15.0%
!!! TAACAAAGAATATTTCTTTT+TGG + Chr2:11079725-11079744 None:intergenic 15.0%
!!! TGTTTTATTTCAAATTTCAT+AGG - Chr2:11081820-11081839 MsG0280007136.01.T01:intron 15.0%
!! AAATAGATCAAACAATAACA+TGG + Chr2:11081049-11081068 None:intergenic 20.0%
!! AATTAGTGAATTTCAAAATG+TGG - Chr2:11081843-11081862 MsG0280007136.01.T01:intron 20.0%
!! ATATTCCTTCATATTATATC+AGG - Chr2:11081877-11081896 MsG0280007136.01.T01:intron 20.0%
!! CTTATAAAATTGAATATGCA+GGG - Chr2:11083057-11083076 MsG0280007136.01.T01:intron 20.0%
!! TATTCCTTCATATTATATCA+GGG - Chr2:11081878-11081897 MsG0280007136.01.T01:intron 20.0%
!! TCTTATAAAATTGAATATGC+AGG - Chr2:11083056-11083075 MsG0280007136.01.T01:intron 20.0%
!! TTAGTAGAAATGAAAAACTT+GGG - Chr2:11079634-11079653 MsG0280007136.01.T01:intron 20.0%
!! TTGAAATAAAACACAAGAAA+TGG + Chr2:11081813-11081832 None:intergenic 20.0%
!! TTGGTAAAATTAAAAAGGTA+AGG + Chr2:11081574-11081593 None:intergenic 20.0%
!! TTTAGTAGAAATGAAAAACT+TGG - Chr2:11079633-11079652 MsG0280007136.01.T01:intron 20.0%
!!! AATTGTAGACTTTTAATCAA+GGG + Chr2:11083288-11083307 None:intergenic 20.0%
!!! AATTTCATTTAACCTACTTT+TGG - Chr2:11082372-11082391 MsG0280007136.01.T01:CDS 20.0%
!!! AGATATCATCATTTAAGATA+AGG + Chr2:11080115-11080134 None:intergenic 20.0%
!!! AGTAGTTGGTAAAATTAAAA+AGG + Chr2:11081579-11081598 None:intergenic 20.0%
!!! AGTCTAAATCTATTGATTAA+TGG - Chr2:11083487-11083506 MsG0280007136.01.T01:intron 20.0%
!!! ATAGAAGATAACTTAACTTT+TGG - Chr2:11081636-11081655 MsG0280007136.01.T01:intron 20.0%
!!! TAATTGTAGACTTTTAATCA+AGG + Chr2:11083289-11083308 None:intergenic 20.0%
!!! TGATATTTTTTTTCTGAAAC+AGG - Chr2:11080937-11080956 MsG0280007136.01.T01:CDS 20.0%
!!! TTGAGTGATGATTTATTTTT+TGG - Chr2:11079791-11079810 MsG0280007136.01.T01:CDS 20.0%
!!! TTTAAGTTAAAAATAAAGGG+TGG - Chr2:11079468-11079487 MsG0280007136.01.T01:CDS 20.0%
! ACAGATATGATTCATAACAA+AGG + Chr2:11082726-11082745 None:intergenic 25.0%
! AGTGAATAAAATGTCTTGTA+AGG - Chr2:11079994-11080013 MsG0280007136.01.T01:CDS 25.0%
! ATATGTGAAAAACCAAAAGT+AGG + Chr2:11082387-11082406 None:intergenic 25.0%
! ATCAGTTATCAACAAATGTA+TGG - Chr2:11082452-11082471 MsG0280007136.01.T01:CDS 25.0%
! CATTAACATAAGAATGGAAA+TGG + Chr2:11080691-11080710 None:intergenic 25.0%
! CTTATGTTAATGTACTACAT+AGG - Chr2:11080699-11080718 MsG0280007136.01.T01:intron 25.0%
! CTTTACCATAAGAATGAAAA+TGG + Chr2:11079310-11079329 None:intergenic 25.0%
! GTAGTACATTAACATAAGAA+TGG + Chr2:11080697-11080716 None:intergenic 25.0%
! TATGTCAAAAAACCTGTAAT+TGG + Chr2:11082703-11082722 None:intergenic 25.0%
! TATTCCATTATAAATGTCCT+CGG + Chr2:11083807-11083826 None:intergenic 25.0%
! TTCAACTATTTAATACAGAG+AGG - Chr2:11082413-11082432 MsG0280007136.01.T01:CDS 25.0%
! TTGTATATCAGATATTTCGT+TGG - Chr2:11083643-11083662 MsG0280007136.01.T01:intron 25.0%
! TTTATTCACTAATCACTATC+AGG + Chr2:11079984-11080003 None:intergenic 25.0%
!! AGACTTTTGCATATAGAAAA+AGG + Chr2:11083225-11083244 None:intergenic 25.0%
!! AGTAACATGAATAGAAGTAT+CGG + Chr2:11081238-11081257 None:intergenic 25.0%
!! CTTTATGTCTCTTATTTGTA+GGG + Chr2:11081491-11081510 None:intergenic 25.0%
!! GAATACCATTTTCATTCTTA+TGG - Chr2:11079302-11079321 MsG0280007136.01.T01:three_prime_UTR 25.0%
!! TTAATTTTACCAACTACTGT+TGG - Chr2:11081581-11081600 MsG0280007136.01.T01:CDS 25.0%
!! TTTCATCATTTAAGTTCTTG+TGG - Chr2:11079570-11079589 MsG0280007136.01.T01:intron 25.0%
!!! AATGTATGGTGTCTTTTTTA+AGG - Chr2:11082466-11082485 MsG0280007136.01.T01:CDS 25.0%
!!! TTTTTTTTCTGAAACAGGAT+TGG - Chr2:11080942-11080961 MsG0280007136.01.T01:CDS 25.0%
AAAAACTTGGGTCATTGTAA+TGG - Chr2:11079646-11079665 MsG0280007136.01.T01:intron 30.0%
AAGAGTAGGTATTCAAAGTT+TGG + Chr2:11082981-11083000 None:intergenic 30.0%
AAGCATTATAGTACCTCAAT+TGG + Chr2:11082585-11082604 None:intergenic 30.0%
AAGTTAAAAATAAAGGGTGG+TGG - Chr2:11079471-11079490 MsG0280007136.01.T01:CDS 30.0%
ACCAATACAGAGTTGAAAAA+TGG + Chr2:11079263-11079282 None:intergenic 30.0%
AGATATTGTTTGGACAAATG+AGG - Chr2:11083582-11083601 MsG0280007136.01.T01:intron 30.0%
ATACCAGAAAACTAATTCCA+AGG - Chr2:11083159-11083178 MsG0280007136.01.T01:intron 30.0%
ATCATAACACGTGAAACAAA+AGG + Chr2:11082048-11082067 None:intergenic 30.0%
GAGTTGTGTAAAATAAAGGT+TGG + Chr2:11079163-11079182 None:intergenic 30.0%
GATCAAAGTTAAATCTGCAA+TGG + Chr2:11081275-11081294 None:intergenic 30.0%
GCAAAAATTGTCAAAAACTG+AGG + Chr2:11080153-11080172 None:intergenic 30.0%
GGTACACAAATTCTTACTAT+AGG + Chr2:11081217-11081236 None:intergenic 30.0%
GGTTAAATGAAATTACCTCA+AGG + Chr2:11082366-11082385 None:intergenic 30.0%
GGTTGAGGATTTACTTAATT+TGG - Chr2:11080554-11080573 MsG0280007136.01.T01:intron 30.0%
GTGAGAGTTGTGTAAAATAA+AGG + Chr2:11079167-11079186 None:intergenic 30.0%
TACTTCAAACAGATGTGAAA+TGG - Chr2:11081742-11081761 MsG0280007136.01.T01:CDS 30.0%
TATATCTGATGCTCATTACA+AGG - Chr2:11081946-11081965 MsG0280007136.01.T01:CDS 30.0%
TATATGCAAAAGTCTACAAG+TGG - Chr2:11083230-11083249 MsG0280007136.01.T01:intron 30.0%
TCATCAGTCAAATTTGAGAA+TGG - Chr2:11080237-11080256 MsG0280007136.01.T01:intron 30.0%
TGGCTATTGTAATAACGATA+GGG + Chr2:11079139-11079158 None:intergenic 30.0%
TTACTGTGTTTAACAAGAGT+AGG + Chr2:11082995-11083014 None:intergenic 30.0%
TTCTGCTAAATTCAGAGTAA+TGG - Chr2:11080506-11080525 MsG0280007136.01.T01:intron 30.0%
TTGGCTATTGTAATAACGAT+AGG + Chr2:11079140-11079159 None:intergenic 30.0%
! ACTTTTTGTTAAGCAGAACA+TGG - Chr2:11080359-11080378 MsG0280007136.01.T01:CDS 30.0%
! AGGATTTGAGGTAATAAAGA+AGG - Chr2:11082833-11082852 MsG0280007136.01.T01:intron 30.0%
! ATGTTGATTGTTCAAAGGTA+TGG - Chr2:11081699-11081718 MsG0280007136.01.T01:intron 30.0%
! GCTTTATGTCTCTTATTTGT+AGG + Chr2:11081492-11081511 None:intergenic 30.0%
! GTTGTATGTTGATTGTTCAA+AGG - Chr2:11081694-11081713 MsG0280007136.01.T01:intron 30.0%
! TCTTTTATGAATCTTGCAGT+GGG - Chr2:11082276-11082295 MsG0280007136.01.T01:intron 30.0%
! TGTGTAAAATAAAGGTTGGT+TGG + Chr2:11079159-11079178 None:intergenic 30.0%
! TTCTTTTATGAATCTTGCAG+TGG - Chr2:11082275-11082294 MsG0280007136.01.T01:intron 30.0%
! TTTCACATCTGTTTGAAGTA+AGG + Chr2:11081742-11081761 None:intergenic 30.0%
!! CGAATTATTTTGTTTCACGA+AGG - Chr2:11081428-11081447 MsG0280007136.01.T01:CDS 30.0%
!! TATAGTACCTCAATTGGTTT+TGG + Chr2:11082579-11082598 None:intergenic 30.0%
!! TGAAAAAGTTAGTTCTGCTT+TGG + Chr2:11079555-11079574 None:intergenic 30.0%
!!! TTTTGGTTTTAACCTTGACA+GGG - Chr2:11082651-11082670 MsG0280007136.01.T01:intron 30.0%
AAAATTGAATATGCAGGGAG+TGG - Chr2:11083062-11083081 MsG0280007136.01.T01:intron 35.0%
AAGGTTCACATTGAAGCATA+TGG - Chr2:11082882-11082901 MsG0280007136.01.T01:intron 35.0%
AATGTGCATCTTATTGAGTG+TGG - Chr2:11079854-11079873 MsG0280007136.01.T01:intron 35.0%
ACAAGAAATGGTATTACCTG+AGG + Chr2:11081801-11081820 None:intergenic 35.0%
ACTAGCACATACACAAATAC+TGG + Chr2:11080875-11080894 None:intergenic 35.0%
AGGACCCTGATATAATATGA+AGG + Chr2:11081885-11081904 None:intergenic 35.0%
ATCAAAGATGTGGAGTTCTT+TGG - Chr2:11080455-11080474 MsG0280007136.01.T01:intron 35.0%
ATCACTCAAGAAAATGTGCA+AGG + Chr2:11079780-11079799 None:intergenic 35.0%
ATTAACATCAGTGGTACCAA+TGG - Chr2:11081986-11082005 MsG0280007136.01.T01:intron 35.0%
CGAAGCTAGAAAATGAAACT+AGG - Chr2:11081605-11081624 MsG0280007136.01.T01:intron 35.0%
GAAAATTTGAGCGCTAAAAG+CGG + Chr2:11083185-11083204 None:intergenic 35.0%
GGCTATTGTAATAACGATAG+GGG + Chr2:11079138-11079157 None:intergenic 35.0%
GGTACAACAAGAAATTTACC+TGG + Chr2:11082027-11082046 None:intergenic 35.0%
TAACCTGCAATCAAGACATT+AGG + Chr2:11083338-11083357 None:intergenic 35.0%
TAATGTACTCTCTGCCAATA+AGG + Chr2:11083411-11083430 None:intergenic 35.0%
TAATTCTCTTCTGTGTACCT+CGG + Chr2:11079905-11079924 None:intergenic 35.0%
TATGCTGGAATTAACATCAG+TGG - Chr2:11081977-11081996 MsG0280007136.01.T01:intron 35.0%
TCAAATTTGAGAATGGTTGC+TGG - Chr2:11080244-11080263 MsG0280007136.01.T01:intron 35.0%
TCATCTCATAACCAATGACT+AGG + Chr2:11083616-11083635 None:intergenic 35.0%
TGAAATCTTCAGTAACCCAA+AGG - Chr2:11081515-11081534 MsG0280007136.01.T01:CDS 35.0%
TGCAATCAAGACATTAGGAA+AGG + Chr2:11083333-11083352 None:intergenic 35.0%
TTATAAGTCCAAGCTTCTCT+TGG - Chr2:11079067-11079086 MsG0280007136.01.T01:three_prime_UTR 35.0%
TTCAAACATGGATCCATATG+TGG - Chr2:11083379-11083398 MsG0280007136.01.T01:intron 35.0%
TTCACCGAGGACATTTATAA+TGG - Chr2:11083800-11083819 MsG0280007136.01.T01:five_prime_UTR 35.0%
TTGAATAGCTTCTCTTTCTG+AGG + Chr2:11083777-11083796 None:intergenic 35.0%
TTGTTCAGTAATTCTCTGTC+AGG + Chr2:11082532-11082551 None:intergenic 35.0%
TTTCCTAATGTCTTGATTGC+AGG - Chr2:11083332-11083351 MsG0280007136.01.T01:intron 35.0%
! AAAGCTGCAAACTTTGGAAA+TGG + Chr2:11079237-11079256 None:intergenic 35.0%
! AAGCTGCAAACTTTGGAAAT+GGG + Chr2:11079236-11079255 None:intergenic 35.0%
! AAGGAGTACAATACATACCA+CGG + Chr2:11081555-11081574 None:intergenic 35.0%
! AATCATTCTTGTATTGACCG+AGG - Chr2:11079885-11079904 MsG0280007136.01.T01:intron 35.0%
! AGCTATTCAAATTTTCACCG+AGG - Chr2:11083787-11083806 MsG0280007136.01.T01:five_prime_UTR 35.0%
! ATTTTCAAAGATCCTTTCCG+CGG - Chr2:11081321-11081340 MsG0280007136.01.T01:intron 35.0%
! CAGCATCAACACATTTTCTT+GGG - Chr2:11082947-11082966 MsG0280007136.01.T01:intron 35.0%
! GGATCTTTGAAAATTGCTTG+AGG + Chr2:11081315-11081334 None:intergenic 35.0%
! TGTCTCTTATTTGTAGGGAT+AGG + Chr2:11081486-11081505 None:intergenic 35.0%
! TTTCAGTACAAAGAGCATGA+GGG - Chr2:11082803-11082822 MsG0280007136.01.T01:intron 35.0%
!! ACACCTTCAAGTTGAATTGT+CGG + Chr2:11080726-11080745 None:intergenic 35.0%
!! GAGTGGATGAAGTTTGTTTT+TGG + Chr2:11079107-11079126 None:intergenic 35.0%
!! GGTAACAACATTTTGGTAAG+TGG - Chr2:11081345-11081364 MsG0280007136.01.T01:intron 35.0%
!! TAAAGGGTGGTGGTTATTTT+TGG - Chr2:11079481-11079500 MsG0280007136.01.T01:CDS 35.0%
!! TTTTCAGTACAAAGAGCATG+AGG - Chr2:11082802-11082821 MsG0280007136.01.T01:intron 35.0%
!!! CTCAATTGGTTTTGGATCAA+GGG + Chr2:11082571-11082590 None:intergenic 35.0%
!!! GCCATTTTTCAACTCTGTAT+TGG - Chr2:11079259-11079278 MsG0280007136.01.T01:three_prime_UTR 35.0%
!!! GTTTTGGTTTTAACCTTGAC+AGG - Chr2:11082650-11082669 MsG0280007136.01.T01:intron 35.0%
!!! TTTTTCTGAAACAGGATTGG+TGG - Chr2:11080945-11080964 MsG0280007136.01.T01:CDS 35.0%
AACAAGAAATTTACCTGGCC+AGG + Chr2:11082022-11082041 None:intergenic 40.0%
AATAAGGCTGTCACCACATA+TGG + Chr2:11083395-11083414 None:intergenic 40.0%
ACAGATGTGAAATGGCCATT+AGG - Chr2:11081750-11081769 MsG0280007136.01.T01:CDS 40.0%
AGAGTAATGGCAATCAACTC+TGG - Chr2:11080519-11080538 MsG0280007136.01.T01:intron 40.0%
AGGGTTCAAAATTCGAACTC+TGG + Chr2:11083269-11083288 None:intergenic 40.0%
ATCACTTCACTATCTTCACC+AGG + Chr2:11081194-11081213 None:intergenic 40.0%
ATGCTTCAATGTGAACCTTG+TGG + Chr2:11082881-11082900 None:intergenic 40.0%
ATGGAGAAGGAAATGAGAGA+AGG - Chr2:11082901-11082920 MsG0280007136.01.T01:intron 40.0%
ATGTGAAATGGCCATTAGGT+TGG - Chr2:11081754-11081773 MsG0280007136.01.T01:CDS 40.0%
CACAACTCTCACACTCTATA+TGG - Chr2:11079175-11079194 MsG0280007136.01.T01:three_prime_UTR 40.0%
CACATTGAAGCATATGGAGA+AGG - Chr2:11082888-11082907 MsG0280007136.01.T01:intron 40.0%
CAGAGAATTACTGAACAAGC+TGG - Chr2:11082534-11082553 MsG0280007136.01.T01:intron 40.0%
CATGACATAAGCACAAGTGT+CGG - Chr2:11082135-11082154 MsG0280007136.01.T01:intron 40.0%
CCTTGATCCAAAACCAATTG+AGG - Chr2:11082569-11082588 MsG0280007136.01.T01:intron 40.0%
CTATATGGTTCAGTGACACA+AGG - Chr2:11079190-11079209 MsG0280007136.01.T01:three_prime_UTR 40.0%
CTCCACATCTTTGATGAGAT+CGG + Chr2:11080450-11080469 None:intergenic 40.0%
CTTCCTAAGTGGAACTATGA+CGG - Chr2:11081149-11081168 MsG0280007136.01.T01:CDS 40.0%
CTTGTCTGACATTGTGTAGA+AGG + Chr2:11080399-11080418 None:intergenic 40.0%
GAATTTCAGCCTCAACCTTT+GGG + Chr2:11081533-11081552 None:intergenic 40.0%
GCAATTATGCTGTCAGTGAA+TGG + Chr2:11080588-11080607 None:intergenic 40.0%
GCATAATTGCTGAGTACATC+TGG - Chr2:11080598-11080617 MsG0280007136.01.T01:CDS 40.0%
TAAATCCTCAACCCTGTTGA+TGG + Chr2:11080547-11080566 None:intergenic 40.0%
TCACTTCACTATCTTCACCA+GGG + Chr2:11081193-11081212 None:intergenic 40.0%
TCATAACCAATGACTAGGCA+TGG + Chr2:11083611-11083630 None:intergenic 40.0%
TGAAAATTGCTTGAGGACTG+TGG + Chr2:11081308-11081327 None:intergenic 40.0%
TGAAGCTGGTGATCATATCT+GGG - Chr2:11082327-11082346 MsG0280007136.01.T01:CDS 40.0%
TGGCAAAAAGCTGCAAACTT+TGG + Chr2:11079243-11079262 None:intergenic 40.0%
TGTCTTGATTGCAGGTTACT+TGG - Chr2:11083340-11083359 MsG0280007136.01.T01:intron 40.0%
TTGAAGCTGGTGATCATATC+TGG - Chr2:11082326-11082345 MsG0280007136.01.T01:CDS 40.0%
TTTAACCTTGACAGGGTGAT+TGG - Chr2:11082658-11082677 MsG0280007136.01.T01:intron 40.0%
! ATATGTGGTGACAGCCTTAT+TGG - Chr2:11083394-11083413 MsG0280007136.01.T01:intron 40.0%
! ATGCTCAACAGGCTTTGATA+TGG + Chr2:11081120-11081139 None:intergenic 40.0%
! CCAAGAAAATGTGTTGATGC+TGG + Chr2:11082949-11082968 None:intergenic 40.0%
! CCAGCATCAACACATTTTCT+TGG - Chr2:11082946-11082965 MsG0280007136.01.T01:intron 40.0%
! GGCAGAGAGTACATTATTGT+GGG - Chr2:11083415-11083434 MsG0280007136.01.T01:intron 40.0%
! TACAAGGCTTGCTTATATGC+TGG - Chr2:11081962-11081981 MsG0280007136.01.T01:intron 40.0%
! TATGGATCCATGTTTGAAGC+CGG + Chr2:11083377-11083396 None:intergenic 40.0%
! TGGCAGAGAGTACATTATTG+TGG - Chr2:11083414-11083433 MsG0280007136.01.T01:intron 40.0%
!! CTTCTCTTGGTGCTCTTTAA+GGG - Chr2:11079080-11079099 MsG0280007136.01.T01:three_prime_UTR 40.0%
!! TATCAAGTTGGTCCTAGTGT+AGG - Chr2:11082301-11082320 MsG0280007136.01.T01:intron 40.0%
!! TGAAGACTTCGGTGCTATAT+AGG - Chr2:11082221-11082240 MsG0280007136.01.T01:intron 40.0%
!!! CCTCAATTGGTTTTGGATCA+AGG + Chr2:11082572-11082591 None:intergenic 40.0%
AAATTGCTTGAGGACTGTGG+AGG + Chr2:11081305-11081324 None:intergenic 45.0%
AATGGTATTACCTGAGGACC+AGG + Chr2:11081795-11081814 None:intergenic 45.0%
AATGTGAACCTTGTGGCGAA+GGG + Chr2:11082874-11082893 None:intergenic 45.0%
ACATGTGTCAATGCCCAACA+CGG + Chr2:11082169-11082188 None:intergenic 45.0%
ACCAAATGACTTATCTGCCC+CGG + Chr2:11081921-11081940 None:intergenic 45.0%
ATTGTGGGAACCAACTCTAG+AGG - Chr2:11083430-11083449 MsG0280007136.01.T01:intron 45.0%
CACCGAAGTCTTCACAATGA+AGG + Chr2:11082215-11082234 None:intergenic 45.0%
CACTTCACTATCTTCACCAG+GGG + Chr2:11081192-11081211 None:intergenic 45.0%
CAGGATGTCACACCAATTAC+AGG - Chr2:11082688-11082707 MsG0280007136.01.T01:intron 45.0%
CCAAAATGTTGTTACCACCG+CGG + Chr2:11081341-11081360 None:intergenic 45.0%
CCAGCTTCAATACCTACACT+AGG + Chr2:11082316-11082335 None:intergenic 45.0%
CGCCTTCATTGTGAAGACTT+CGG - Chr2:11082210-11082229 MsG0280007136.01.T01:intron 45.0%
CTCACCTTTGCCATTCTTCT+CGG + Chr2:11083124-11083143 None:intergenic 45.0%
CTCCGATCTCATCAAAGATG+TGG - Chr2:11080445-11080464 MsG0280007136.01.T01:intron 45.0%
CTTCAGTAACCCAAAGGTTG+AGG - Chr2:11081521-11081540 MsG0280007136.01.T01:CDS 45.0%
GAATTTATCCCTTCGCCACA+AGG - Chr2:11082863-11082882 MsG0280007136.01.T01:intron 45.0%
GATCCGTCATAGTTCCACTT+AGG + Chr2:11081155-11081174 None:intergenic 45.0%
GGAAATGAGAGAAGGTTGAC+AGG - Chr2:11082909-11082928 MsG0280007136.01.T01:intron 45.0%
GGAATTTCAGCCTCAACCTT+TGG + Chr2:11081534-11081553 None:intergenic 45.0%
GGACCGACAATTCAACTTGA+AGG - Chr2:11080720-11080739 MsG0280007136.01.T01:intron 45.0%
GTGATCATATCTGGGCTTCA+AGG - Chr2:11082335-11082354 MsG0280007136.01.T01:CDS 45.0%
TAGCTTCGACCAACAGTAGT+TGG + Chr2:11081593-11081612 None:intergenic 45.0%
TGATGAGATCGGAGTTGCAA+GGG + Chr2:11080439-11080458 None:intergenic 45.0%
TGCGATGCTTATACACCACA+AGG - Chr2:11081456-11081475 MsG0280007136.01.T01:CDS 45.0%
TTCCACTTAGGAAGCTCAGA+GGG + Chr2:11081143-11081162 None:intergenic 45.0%
TTGATGAGATCGGAGTTGCA+AGG + Chr2:11080440-11080459 None:intergenic 45.0%
TTGCAGGTTACTTGGAAGAC+AGG - Chr2:11083348-11083367 MsG0280007136.01.T01:intron 45.0%
! ACAAAGAGCATGAGGGAAGA+TGG - Chr2:11082810-11082829 MsG0280007136.01.T01:intron 45.0%
! GCAGAACATGGCACAGATTT+TGG - Chr2:11080371-11080390 MsG0280007136.01.T01:intron 45.0%
! TGAAACAGGATTGGTGGAAC+AGG - Chr2:11080951-11080970 MsG0280007136.01.T01:CDS 45.0%
!! AAAGAGCACCAAGAGAAGCT+TGG + Chr2:11079078-11079097 None:intergenic 45.0%
!! AACTATGACGGATCTAGCAC+TGG - Chr2:11081161-11081180 MsG0280007136.01.T01:CDS 45.0%
!! CCTAGTGTAGGTATTGAAGC+TGG - Chr2:11082313-11082332 MsG0280007136.01.T01:CDS 45.0%
!! GCTTCTCTTGGTGCTCTTTA+AGG - Chr2:11079079-11079098 MsG0280007136.01.T01:three_prime_UTR 45.0%
!! TGTTGGGCATTGACACATGT+TGG - Chr2:11082169-11082188 MsG0280007136.01.T01:intron 45.0%
!! TTCACAATGAAGGCGTCTCT+CGG + Chr2:11082205-11082224 None:intergenic 45.0%
!! TTGCAGTGGGAGTATCAAGT+TGG - Chr2:11082289-11082308 MsG0280007136.01.T01:intron 45.0%
!!! CGGCCTTGGAATTAGTTTTC+TGG + Chr2:11083165-11083184 None:intergenic 45.0%
!!! TTTTTTAAGTTAAAAATAAA+GGG - Chr2:11079465-11079484 MsG0280007136.01.T01:CDS 5.0%
!!! TTTTTTTAAGTTAAAAATAA+AGG - Chr2:11079464-11079483 MsG0280007136.01.T01:CDS 5.0%
AAATGACTTATCTGCCCCGG+CGG + Chr2:11081918-11081937 None:intergenic 50.0%
ACCAATGGAGAGGTTATGCC+TGG - Chr2:11082001-11082020 MsG0280007136.01.T01:intron 50.0%
AGGTTGAGGCTGAAATTCCG+TGG - Chr2:11081535-11081554 MsG0280007136.01.T01:CDS 50.0%
ATCCCTCTGAGCTTCCTAAG+TGG - Chr2:11081138-11081157 MsG0280007136.01.T01:CDS 50.0%
ATGTTGTTACCACCGCGGAA+AGG + Chr2:11081336-11081355 None:intergenic 50.0%
CAACTCTGGCACCATCAACA+GGG - Chr2:11080533-11080552 MsG0280007136.01.T01:intron 50.0%
CAATGTGAACCTTGTGGCGA+AGG + Chr2:11082875-11082894 None:intergenic 50.0%
CATCAGTGGTACCAATGGAG+AGG - Chr2:11081991-11082010 MsG0280007136.01.T01:intron 50.0%
CCATTCCAATCACCCTGTCA+AGG + Chr2:11082666-11082685 None:intergenic 50.0%
CCTTGACAGGGTGATTGGAA+TGG - Chr2:11082663-11082682 MsG0280007136.01.T01:intron 50.0%
GACACCGAGAAGAATGGCAA+AGG - Chr2:11083117-11083136 MsG0280007136.01.T01:intron 50.0%
GAGGGAAGATGGAGGATTTG+AGG - Chr2:11082821-11082840 MsG0280007136.01.T01:intron 50.0%
GATGAGATCGGAGTTGCAAG+GGG + Chr2:11080438-11080457 None:intergenic 50.0%
GGAAGAGACACCGAGAAGAA+TGG - Chr2:11083111-11083130 MsG0280007136.01.T01:intron 50.0%
GGCTGTGTTTGCATGTGGTA+TGG - Chr2:11083664-11083683 MsG0280007136.01.T01:five_prime_UTR 50.0%
GGCTTCAAGGTACATCCTTG+AGG - Chr2:11082348-11082367 MsG0280007136.01.T01:CDS 50.0%
GTTCCACTTAGGAAGCTCAG+AGG + Chr2:11081144-11081163 None:intergenic 50.0%
TCAACTCTGGCACCATCAAC+AGG - Chr2:11080532-11080551 MsG0280007136.01.T01:intron 50.0%
TTACTTGGAAGACAGGCGTC+CGG - Chr2:11083355-11083374 MsG0280007136.01.T01:intron 50.0%
TTCAAAGATCCTTTCCGCGG+TGG - Chr2:11081324-11081343 MsG0280007136.01.T01:intron 50.0%
! AAGAGCATGAGGGAAGATGG+AGG - Chr2:11082813-11082832 MsG0280007136.01.T01:intron 50.0%
! CCGCGGTGGTAACAACATTT+TGG - Chr2:11081338-11081357 MsG0280007136.01.T01:intron 50.0%
! TCGTTGGCTGTGTTTGCATG+TGG - Chr2:11083659-11083678 MsG0280007136.01.T01:five_prime_UTR 50.0%
!! AGAGCTTCAGCCTCTAGAGT+TGG + Chr2:11083443-11083462 None:intergenic 50.0%
AGCTCAGAGGGATGCTCAAC+AGG + Chr2:11081131-11081150 None:intergenic 55.0%
AGGCTGCCATGCCTAGTCAT+TGG - Chr2:11083602-11083621 MsG0280007136.01.T01:intron 55.0%
CAGCACTGCTGCAGTTTGTG+AGG - Chr2:11083513-11083532 MsG0280007136.01.T01:intron 55.0%
CAGGGTGATTGGAATGGTGC+AGG - Chr2:11082669-11082688 MsG0280007136.01.T01:intron 55.0%
CCACCAACAGGCCAACCTAA+TGG + Chr2:11081768-11081787 None:intergenic 55.0%
CGTGGATGCTCAATCCGTGT+GGG - Chr2:11083090-11083109 MsG0280007136.01.T01:intron 55.0%
GCCAGGCATAACCTCTCCAT+TGG + Chr2:11082005-11082024 None:intergenic 55.0%
GCCGGGGCAGATAAGTCATT+TGG - Chr2:11081917-11081936 MsG0280007136.01.T01:intron 55.0%
GTAGGGATAGGCTCACCTTG+TGG + Chr2:11081474-11081493 None:intergenic 55.0%
TGCTGCAGTTTGTGAGGTGC+TGG - Chr2:11083519-11083538 MsG0280007136.01.T01:intron 55.0%
TGGCACCATCAACAGGGTTG+AGG - Chr2:11080539-11080558 MsG0280007136.01.T01:intron 55.0%
TTGAGCGCTAAAAGCGGCCT+TGG + Chr2:11083179-11083198 None:intergenic 55.0%
! CCACACGGATTGAGCATCCA+CGG + Chr2:11083092-11083111 None:intergenic 55.0%
! CGATAGGGGTGTGCTATGAG+TGG + Chr2:11079124-11079143 None:intergenic 55.0%
! GCTGCAGTTTGTGAGGTGCT+GGG - Chr2:11083520-11083539 MsG0280007136.01.T01:intron 55.0%
! GTCGGTTTCGTGTCCGTGTT+GGG - Chr2:11082153-11082172 MsG0280007136.01.T01:intron 55.0%
!! CCATTAGGTTGGCCTGTTGG+TGG - Chr2:11081765-11081784 MsG0280007136.01.T01:CDS 55.0%
!! TCTCGGTGTCTCTTCCCACA+CGG + Chr2:11083107-11083126 None:intergenic 55.0%
!! TGGCCATTAGGTTGGCCTGT+TGG - Chr2:11081762-11081781 MsG0280007136.01.T01:CDS 55.0%
!! TGTCGGTTTCGTGTCCGTGT+TGG - Chr2:11082152-11082171 MsG0280007136.01.T01:intron 55.0%
ATGCAGGGAGTGGCTAACCG+TGG - Chr2:11083072-11083091 MsG0280007136.01.T01:intron 60.0%
CAGGCGTCCGGCTTCAAACA+TGG - Chr2:11083367-11083386 MsG0280007136.01.T01:intron 60.0%
CCGTGGATGCTCAATCCGTG+TGG - Chr2:11083089-11083108 MsG0280007136.01.T01:intron 60.0%
GGACCAGGATAGCCACCAAC+AGG + Chr2:11081780-11081799 None:intergenic 60.0%
GGTCCTTATTACTGCGCCGC+CGG - Chr2:11081899-11081918 MsG0280007136.01.T01:intron 60.0%
GTCCTTATTACTGCGCCGCC+GGG - Chr2:11081900-11081919 MsG0280007136.01.T01:intron 60.0%
TCCTTATTACTGCGCCGCCG+GGG - Chr2:11081901-11081920 MsG0280007136.01.T01:intron 60.0%
TGGAGAGGTTATGCCTGGCC+AGG - Chr2:11082006-11082025 MsG0280007136.01.T01:intron 60.0%
TGGTGGCTATCCTGGTCCTC+AGG - Chr2:11081782-11081801 MsG0280007136.01.T01:CDS 60.0%
! TCTAGCACTGGACAAGCCCC+TGG - Chr2:11081173-11081192 MsG0280007136.01.T01:CDS 60.0%
!! TGGCCTGTTGGTGGCTATCC+TGG - Chr2:11081774-11081793 MsG0280007136.01.T01:CDS 60.0%
GCCCCGGCGGCGCAGTAATA+AGG + Chr2:11081905-11081924 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr2 gene 11079051 11083873 11079051 ID=MsG0280007136.01;Name=MsG0280007136.01
Chr2 mRNA 11079051 11083873 11079051 ID=MsG0280007136.01.T01;Parent=MsG0280007136.01;Name=MsG0280007136.01.T01;_AED=0.47;_eAED=0.48;_QI=233|0.84|0.85|1|0.92|0.85|14|380|469
Chr2 exon 11079051 11079570 11079051 ID=MsG0280007136.01.T01:exon:2682;Parent=MsG0280007136.01.T01
Chr2 exon 11079786 11079846 11079786 ID=MsG0280007136.01.T01:exon:2681;Parent=MsG0280007136.01.T01
Chr2 exon 11079956 11080115 11079956 ID=MsG0280007136.01.T01:exon:2680;Parent=MsG0280007136.01.T01
Chr2 exon 11080215 11080252 11080215 ID=MsG0280007136.01.T01:exon:2679;Parent=MsG0280007136.01.T01
Chr2 exon 11080334 11080387 11080334 ID=MsG0280007136.01.T01:exon:2678;Parent=MsG0280007136.01.T01
Chr2 exon 11080555 11080629 11080555 ID=MsG0280007136.01.T01:exon:2677;Parent=MsG0280007136.01.T01
Chr2 exon 11080897 11081025 11080897 ID=MsG0280007136.01.T01:exon:2676;Parent=MsG0280007136.01.T01
Chr2 exon 11081121 11081208 11081121 ID=MsG0280007136.01.T01:exon:2675;Parent=MsG0280007136.01.T01
Chr2 exon 11081368 11081613 11081368 ID=MsG0280007136.01.T01:exon:2674;Parent=MsG0280007136.01.T01
Chr2 exon 11081705 11081808 11081705 ID=MsG0280007136.01.T01:exon:2673;Parent=MsG0280007136.01.T01
Chr2 exon 11081926 11081965 11081926 ID=MsG0280007136.01.T01:exon:2672;Parent=MsG0280007136.01.T01
Chr2 exon 11082042 11082074 11082042 ID=MsG0280007136.01.T01:exon:2671;Parent=MsG0280007136.01.T01
Chr2 exon 11082305 11082549 11082305 ID=MsG0280007136.01.T01:exon:2670;Parent=MsG0280007136.01.T01
Chr2 exon 11083644 11083873 11083644 ID=MsG0280007136.01.T01:exon:2669;Parent=MsG0280007136.01.T01
Chr2 five_prime_UTR 11083644 11083873 11083644 ID=MsG0280007136.01.T01:five_prime_utr;Parent=MsG0280007136.01.T01
Chr2 five_prime_UTR 11082547 11082549 11082547 ID=MsG0280007136.01.T01:five_prime_utr;Parent=MsG0280007136.01.T01
Chr2 CDS 11082305 11082546 11082305 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11082042 11082074 11082042 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11081926 11081965 11081926 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11081705 11081808 11081705 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11081368 11081613 11081368 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11081121 11081208 11081121 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11080897 11081025 11080897 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11080555 11080629 11080555 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11080334 11080387 11080334 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11080215 11080252 11080215 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11079956 11080115 11079956 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11079786 11079846 11079786 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 CDS 11079431 11079570 11079431 ID=MsG0280007136.01.T01:cds;Parent=MsG0280007136.01.T01
Chr2 three_prime_UTR 11079051 11079430 11079051 ID=MsG0280007136.01.T01:three_prime_utr;Parent=MsG0280007136.01.T01
Gene Sequence

>MsG0280007136.01.T01

ATGGCACAGATTTTGGCTCCTTCTACACAATGTCAGACAAGAATCACAAAAACATCTCCCCTTGCAACTCCGATCTCATCAAAGATGTGGAGTTCTTTGGTTATGAAACAAAACAAGAAAGTTGCACGTTCTGCTAAATTCAGAGTAATGGCAATCAACTCTGGCACCATCAACAGGGTTGAGGATTTACTTAATTTGGACATCACTCCATTCACTGACAGCATAATTGCTGAGTACATCTGTTTTTACGTGTCAGTGTCGTGTCCAGTATTTGTGATTGGTGGAACAGGAATCGATGTGCGCAGTAAATCAAGAACCATATCAAAGCCTGTTGAGCATCCCTCTGAGCTTCCTAAGTGGAACTATGACGGATCTAGCACTGGACAAGCCCCTGGTGAAGATAGTGAAGTGATCCTATATCCTCAAGCAATTTTCAAAGATCCTTTCCGCGGTGGTAACAACATTTTGGTAAGTGGTGTAATACTTGAAAGATGTTTCATGCATGTTGACCGAAATGCAAATATTATGAAATTGATCGAATTATTTTGTTTCACGAAGGTCATTTGCGATGCTTATACACCACAAGGTGAGCCTATCCCTACAAATAAGAGACATAAAGCTGCTGAAATCTTCAGTAACCCAAAGGTTGAGGCTGAAATTCCGTGGTATGGAATCGAACAAGAGTACACCTTACTTCAAACAGATGTGAAATGGCCATTAGGTTGGCCTGTTGGTGGCTATCCTGGTCCTCAGGGTCCTTATTACTGCGCCGCCGGGGCAGATAAGTCATTTGGTCGTGATATATCTGATGCTCATTACAAGGCTTGCTTATATGCTGGAATTAACATCAGTGGTACCAATGGAGAGGTTATGCCTGGCCAGTGGGAGTATCAAGTTGGTCCTAGTGTAGGTATTGAAGCTGGTGATCATATCTGGGCTTCAAGGTACATCCTTGAGAGAATTACTGAACAAGCTGGTGTTGTGCTCACCCTTGATCCAAAACCAATTGAGGGTGATTGGAATGGTGCAGGATGTCACACCAATTACAGTACAAAGAGCATGAGGGAAGATGGAGGATTTGAGGTAATAAAGAAGGCAATTTTGAATTTATCCCTTCGCCACAAGGTTCACATTGAAGCATATGGAGAAGGAAATGAGAGAAGGTTGACAGGAAAGCATGAGACTGCCAGCATCAACACATTTTCTTGGGGAGTGGCTAACCGTGGATGCTCAATCCGTGTGGGAAGAGACACCGAGAAGAATGGCAAAGGTTACTTGGAAGACAGGCGTCCGGCTTCAAACATGGATCCATATGTGGTGACAGCCTTATTGGCAGAGAGTACATTATTGTGGGAACCAACTCTAGAGGCTGAAGCTCTTGCAGCTCAGAAGATTGCATTGAAAGTCTAA

Protein sequence

>MsG0280007136.01.T01

MAQILAPSTQCQTRITKTSPLATPISSKMWSSLVMKQNKKVARSAKFRVMAINSGTINRVEDLLNLDITPFTDSIIAEYICFYVSVSCPVFVIGGTGIDVRSKSRTISKPVEHPSELPKWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVSGVILERCFMHVDRNANIMKLIELFCFTKVICDAYTPQGEPIPTNKRHKAAEIFSNPKVEAEIPWYGIEQEYTLLQTDVKWPLGWPVGGYPGPQGPYYCAAGADKSFGRDISDAHYKACLYAGINISGTNGEVMPGQWEYQVGPSVGIEAGDHIWASRYILERITEQAGVVLTLDPKPIEGDWNGAGCHTNYSTKSMREDGGFEVIKKAILNLSLRHKVHIEAYGEGNERRLTGKHETASINTFSWGVANRGCSIRVGRDTEKNGKGYLEDRRPASNMDPYVVTALLAESTLLWEPTLEAEALAAQKIALKV*