AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380016424.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016424.01.T01 MTR_3g088795 76.923 221 2 1 22 193 49 269 2.13e-116 332
MsG0380016424.01.T01 MTR_5g011120 49.600 125 58 3 23 143 38 161 2.36e-32 117
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380016424.01.T01 AT1G44000 61.314 137 47 3 12 143 46 181 2.07e-47 156
MsG0380016424.01.T01 AT4G11910 48.551 138 66 3 4 137 19 155 5.00e-33 119
MsG0380016424.01.T01 AT4G22920 53.782 119 50 3 23 137 42 159 5.54e-33 119
MsG0380016424.01.T01 AT4G22920 53.782 119 50 3 23 137 42 159 5.54e-33 119
MsG0380016424.01.T01 AT4G11911 47.143 140 69 3 8 143 23 161 7.03e-31 114
MsG0380016424.01.T01 AT4G11911 50.000 120 55 3 28 143 3 121 1.32e-28 107

Find 44 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTCAGTGGTCCTACCTTCC+TGG 0.236925 3:+83256114 MsG0380016424.01.T01:CDS
TCTTCTTTCAAATGTATTAC+TGG 0.239741 3:+83257708 MsG0380016424.01.T01:CDS
AAAACTGAAGGTTGTTCTAT+TGG 0.270997 3:+83255604 MsG0380016424.01.T01:CDS
ATCTTAGACTGTTAGGCTCT+TGG 0.300131 3:+83255556 MsG0380016424.01.T01:intron
CTACAATTCACTTGTTTATG+AGG 0.352131 3:+83254749 MsG0380016424.01.T01:CDS
TCTTAGACTGTTAGGCTCTT+GGG 0.362154 3:+83255557 MsG0380016424.01.T01:intron
CTCATAAACAAGTGAATTGT+AGG 0.365356 3:-83254748 None:intergenic
TGGGATAGAATGTAGGTTCT+TGG 0.374986 3:-83255659 None:intergenic
CAAATGTATTACTGGTAACT+TGG 0.405426 3:+83257716 MsG0380016424.01.T01:CDS
GAGCTTGGAAGTTGGACATT+GGG 0.411745 3:-83257675 None:intergenic
GGAATTAGTAGTAGTGATTG+AGG 0.419635 3:-83254718 None:intergenic
GTTCTAGCTGAGGAAAGAAT+CGG 0.444594 3:-83257755 None:intergenic
AGATCGTCCTCCTGAAAAGT+TGG 0.452073 3:+83257648 MsG0380016424.01.T01:CDS
CTGCTCTAATTTGATGACAT+TGG 0.459455 3:-83255717 None:intergenic
ATTCTCCAAGGAAATGACTT+TGG 0.498853 3:+83256165 MsG0380016424.01.T01:CDS
TAAACTCAGCAGCTAGATCC+AGG 0.500066 3:-83256132 None:intergenic
ACATACCAAAGTCATTTCCT+TGG 0.502450 3:-83256170 None:intergenic
CAATGTCATCAAATTAGAGC+AGG 0.504347 3:+83255718 MsG0380016424.01.T01:CDS
ATTTGAAGCTTCAAAACTGA+AGG 0.509783 3:+83255592 MsG0380016424.01.T01:CDS
TTCTAGCTGAGGAAAGAATC+GGG 0.522802 3:-83257754 None:intergenic
GATCGTCCTCCTGAAAAGTT+GGG 0.523261 3:+83257649 MsG0380016424.01.T01:CDS
CATGTTCATTGCTTTGTCAG+TGG 0.525605 3:+83256100 MsG0380016424.01.T01:CDS
AAGTGAATTGTAGGAAGGAG+TGG 0.525993 3:-83254739 None:intergenic
TGTTAGGCTCTTGGGTCCTC+CGG 0.526180 3:+83255565 MsG0380016424.01.T01:CDS
AGAGCTTGGAAGTTGGACAT+TGG 0.533577 3:-83257676 None:intergenic
AAACGAGCGGATCAGTTACA+AGG 0.534539 3:+83257613 MsG0380016424.01.T01:CDS
TAATACATTTGAAAGAAGAA+AGG 0.546906 3:-83257704 None:intergenic
GAGGAGCATCTGAAAGATGA+TGG 0.549556 3:-83254696 None:intergenic
GTTGAGAGGGTGGTATATGA+AGG 0.552011 3:+83256030 MsG0380016424.01.T01:intron
GCAGCTAGATCCAGGAAGGT+AGG 0.554387 3:-83256124 None:intergenic
AGGATGATGTTGTAGCTGAA+TGG 0.558895 3:+83256050 MsG0380016424.01.T01:CDS
TAGATATCACATATTCTCCA+AGG 0.573339 3:+83256153 MsG0380016424.01.T01:CDS
CTCAGCAGCTAGATCCAGGA+AGG 0.591359 3:-83256128 None:intergenic
TAAACAAGTGAATTGTAGGA+AGG 0.591615 3:-83254744 None:intergenic
CTGTGAAATGGCAGTTGAGA+GGG 0.593385 3:+83256017 MsG0380016424.01.T01:intron
ATTAGTAGTAGTGATTGAGG+AGG 0.600646 3:-83254715 None:intergenic
GTCACAGTGGGATAGAATGT+AGG 0.608968 3:-83255666 None:intergenic
ATTAGCTGTTAAGTCACAGT+GGG 0.615651 3:-83255678 None:intergenic
TGACAAAGCAATGAACATGT+AGG 0.637146 3:-83256096 None:intergenic
ACCACCCAAAGTTCTAGCTG+AGG 0.657344 3:-83257765 None:intergenic
TCTGTGAAATGGCAGTTGAG+AGG 0.659471 3:+83256016 MsG0380016424.01.T01:intron
TGAAATGGCAGTTGAGAGGG+TGG 0.680898 3:+83256020 MsG0380016424.01.T01:intron
AACGAGCGGATCAGTTACAA+GGG 0.682090 3:+83257614 MsG0380016424.01.T01:CDS
GATTAGCTGTTAAGTCACAG+TGG 0.723492 3:-83255679 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATAAATAAATATAATAAAA+TGG - Chr3:83254805-83254824 None:intergenic 0.0%
!!! TTATTTATTTATTTATTTTA+TGG + Chr3:83254816-83254835 MsG0380016424.01.T01:intron 0.0%
!! AAATAAATATAATAAAATGG+TGG - Chr3:83254802-83254821 None:intergenic 10.0%
!! AATTGAATTTATAGTTATTA+GGG + Chr3:83256555-83256574 MsG0380016424.01.T01:intron 10.0%
!! TAATTGAATTTATAGTTATT+AGG + Chr3:83256554-83256573 MsG0380016424.01.T01:intron 10.0%
!! ATATTGGTATATGTAAAAAT+TGG + Chr3:83256356-83256375 MsG0380016424.01.T01:intron 15.0%
!! ATTGAATTTATAGTTATTAG+GGG + Chr3:83256556-83256575 MsG0380016424.01.T01:intron 15.0%
!! TATATAATCTTAAACAGTAA+GGG - Chr3:83257239-83257258 None:intergenic 15.0%
!!! AAATCATTTGTTTAAAATTG+TGG + Chr3:83256770-83256789 MsG0380016424.01.T01:intron 15.0%
!!! ATCAATATATTTTCACAAAA+TGG - Chr3:83257191-83257210 None:intergenic 15.0%
!!! GTTCATTTAATAAACTTTTT+AGG + Chr3:83256578-83256597 MsG0380016424.01.T01:intron 15.0%
!! AAACTGTGAAAGAATAAAAA+GGG - Chr3:83254885-83254904 None:intergenic 20.0%
!! ATTATAATCACCAATTTAAC+AGG - Chr3:83257513-83257532 None:intergenic 20.0%
!! CAATAGTCAATTATTGTTAT+TGG + Chr3:83255377-83255396 MsG0380016424.01.T01:intron 20.0%
!! CTATATAATCTTAAACAGTA+AGG - Chr3:83257240-83257259 None:intergenic 20.0%
!! TAATACATTTGAAAGAAGAA+AGG - Chr3:83257707-83257726 None:intergenic 20.0%
!! TTACTACATTATAATCTGTT+GGG + Chr3:83255108-83255127 MsG0380016424.01.T01:intron 20.0%
!! TTATAATCACCAATTTAACA+GGG - Chr3:83257512-83257531 None:intergenic 20.0%
!! TTCTTGTAAAGATAAAATTG+TGG + Chr3:83256844-83256863 MsG0380016424.01.T01:intron 20.0%
!! TTTACTACATTATAATCTGT+TGG + Chr3:83255107-83255126 MsG0380016424.01.T01:intron 20.0%
!!! AAAATGGTGGAAATTAAAAA+GGG - Chr3:83254789-83254808 None:intergenic 20.0%
!!! CATTTAATAAACTTTTTAGG+AGG + Chr3:83256581-83256600 MsG0380016424.01.T01:intron 20.0%
!!! GACTTTTACTTTTTAAACTT+TGG - Chr3:83256639-83256658 None:intergenic 20.0%
!!! TAAAATGGTGGAAATTAAAA+AGG - Chr3:83254790-83254809 None:intergenic 20.0%
!!! TAGAAATCTTAATTTTGTAC+TGG - Chr3:83255271-83255290 None:intergenic 20.0%
! AACGGTTAAAGAAATAAATG+TGG + Chr3:83255833-83255852 MsG0380016424.01.T01:intron 25.0%
! ACACAAGTTATTTGATACTA+GGG + Chr3:83255899-83255918 MsG0380016424.01.T01:intron 25.0%
! ACATTCACATATGAGTAATT+AGG - Chr3:83255062-83255081 None:intergenic 25.0%
! ATTGAAGTTATCACTGAATT+AGG + Chr3:83255199-83255218 MsG0380016424.01.T01:intron 25.0%
! CAAAGAATGCAATTATAACA+AGG - Chr3:83255167-83255186 None:intergenic 25.0%
! CTCAAAAAACTACAATAGAA+TGG + Chr3:83257015-83257034 MsG0380016424.01.T01:intron 25.0%
! GAAACTGTGAAAGAATAAAA+AGG - Chr3:83254886-83254905 None:intergenic 25.0%
! GCAATCATGATATACTATAT+TGG + Chr3:83256340-83256359 MsG0380016424.01.T01:intron 25.0%
! TACACAAGTTATTTGATACT+AGG + Chr3:83255898-83255917 MsG0380016424.01.T01:intron 25.0%
! TATAACACACCAATACTATT+TGG - Chr3:83256536-83256555 None:intergenic 25.0%
! TCTTCTTTCAAATGTATTAC+TGG + Chr3:83257708-83257727 MsG0380016424.01.T01:CDS 25.0%
! TTAGAAATCAAAGATGTTTC+AGG - Chr3:83257361-83257380 None:intergenic 25.0%
! TTCTACATTAACAAAGAAGA+TGG - Chr3:83254971-83254990 None:intergenic 25.0%
! TTGAAGTTATCACTGAATTA+GGG + Chr3:83255200-83255219 MsG0380016424.01.T01:intron 25.0%
!! ACTTTCTTTTGATATGAGAT+TGG + Chr3:83257110-83257129 MsG0380016424.01.T01:intron 25.0%
!! ATCTACTAGAGTACTAAAAA+AGG + Chr3:83256678-83256697 MsG0380016424.01.T01:intron 25.0%
!! ATTAAGTTTCTTCTGTTTTC+AGG + Chr3:83257588-83257607 MsG0380016424.01.T01:intron 25.0%
!! TCAAATTGACTTTACAACTT+TGG + Chr3:83255442-83255461 MsG0380016424.01.T01:intron 25.0%
!! TCTACTAGAGTACTAAAAAA+GGG + Chr3:83256679-83256698 MsG0380016424.01.T01:intron 25.0%
!! TTAAGTTTCTTCTGTTTTCA+GGG + Chr3:83257589-83257608 MsG0380016424.01.T01:intron 25.0%
!! TTTTTGTATCTTAGACTGTT+AGG + Chr3:83255549-83255568 MsG0380016424.01.T01:intron 25.0%
!!! AAACTTGTATTTTTGCACAA+AGG - Chr3:83255959-83255978 None:intergenic 25.0%
!!! ATTATTTCTGCTGTATTGAT+AGG - Chr3:83256235-83256254 None:intergenic 25.0%
AAAACTGAAGGTTGTTCTAT+TGG + Chr3:83255604-83255623 MsG0380016424.01.T01:CDS 30.0%
AAGAGTAACTTGAGTAAACA+TGG - Chr3:83255028-83255047 None:intergenic 30.0%
AAGCAGTACAAAGTATAGAA+AGG - Chr3:83254851-83254870 None:intergenic 30.0%
ACTACAATAGAATGGAATGT+TGG + Chr3:83257023-83257042 MsG0380016424.01.T01:intron 30.0%
ATAGGAAATGGATGCATTAA+AGG - Chr3:83256217-83256236 None:intergenic 30.0%
ATCTTAAACAGTAAGGGATA+TGG - Chr3:83257233-83257252 None:intergenic 30.0%
ATGATTTAGATATGCTCTTC+AGG - Chr3:83256757-83256776 None:intergenic 30.0%
CAAATGTATTACTGGTAACT+TGG + Chr3:83257716-83257735 MsG0380016424.01.T01:CDS 30.0%
CTACAATAGAATGGAATGTT+GGG + Chr3:83257024-83257043 MsG0380016424.01.T01:intron 30.0%
CTACAATTCACTTGTTTATG+AGG + Chr3:83254749-83254768 MsG0380016424.01.T01:CDS 30.0%
CTCATAAACAAGTGAATTGT+AGG - Chr3:83254751-83254770 None:intergenic 30.0%
GAATTCAAGAAAGAGAAAGA+AGG - Chr3:83255424-83255443 None:intergenic 30.0%
GCAGAAATAATATGAATGCT+AGG + Chr3:83256244-83256263 MsG0380016424.01.T01:intron 30.0%
GGCAATACAAGTAAAAATGT+TGG - Chr3:83255146-83255165 None:intergenic 30.0%
TAAACAAGTGAATTGTAGGA+AGG - Chr3:83254747-83254766 None:intergenic 30.0%
TACAATAGAATGGAATGTTG+GGG + Chr3:83257025-83257044 MsG0380016424.01.T01:intron 30.0%
TACTAATTCCAATACCAAGT+AGG - Chr3:83255763-83255782 None:intergenic 30.0%
TACTGCTATGAGAAATAACA+AGG - Chr3:83255469-83255488 None:intergenic 30.0%
TAGACAGATCTTCAATTGAA+AGG - Chr3:83255336-83255355 None:intergenic 30.0%
TAGATATCACATATTCTCCA+AGG + Chr3:83256153-83256172 MsG0380016424.01.T01:CDS 30.0%
TAGGAAATGGATGCATTAAA+GGG - Chr3:83256216-83256235 None:intergenic 30.0%
TCAATTGAAGATCTGTCTAT+AGG + Chr3:83255337-83255356 MsG0380016424.01.T01:intron 30.0%
TCACAAAATGGCTTAATGAA+AGG - Chr3:83257179-83257198 None:intergenic 30.0%
TCAGACAAGAGTAAACAAAA+AGG - Chr3:83257569-83257588 None:intergenic 30.0%
TGAAATTGAAGTTACCAATG+TGG - Chr3:83256406-83256425 None:intergenic 30.0%
TTGACTGTGACAAAAGTAAA+AGG - Chr3:83257317-83257336 None:intergenic 30.0%
TTGTTCTTGTATAGATTGCA+AGG + Chr3:83256798-83256817 MsG0380016424.01.T01:intron 30.0%
! ATTTGAAGCTTCAAAACTGA+AGG + Chr3:83255592-83255611 MsG0380016424.01.T01:CDS 30.0%
! TCTCATAAGCACATTAGTTT+CGG - Chr3:83255308-83255327 None:intergenic 30.0%
!! TTTGAAGCTTCAAATTTTGC+CGG - Chr3:83255587-83255606 None:intergenic 30.0%
!!! TGTAGTTTTTTGAGCTAGAA+TGG - Chr3:83257009-83257028 None:intergenic 30.0%
AAATGCTAACAAGTGCCTTT+AGG + Chr3:83255808-83255827 MsG0380016424.01.T01:intron 35.0%
AATGCTAACAAGTGCCTTTA+GGG + Chr3:83255809-83255828 MsG0380016424.01.T01:intron 35.0%
AATGTATTATGACACGTGGT+TGG + Chr3:83256881-83256900 MsG0380016424.01.T01:intron 35.0%
ACATACCAAAGTCATTTCCT+TGG - Chr3:83256173-83256192 None:intergenic 35.0%
ACTATAGAATCCAGCAATTC+TGG - Chr3:83256975-83256994 None:intergenic 35.0%
ATTAGCTGTTAAGTCACAGT+GGG - Chr3:83255681-83255700 None:intergenic 35.0%
ATTAGTAGTAGTGATTGAGG+AGG - Chr3:83254718-83254737 None:intergenic 35.0%
ATTCTCCAAGGAAATGACTT+TGG + Chr3:83256165-83256184 MsG0380016424.01.T01:CDS 35.0%
CAATGTCATCAAATTAGAGC+AGG + Chr3:83255718-83255737 MsG0380016424.01.T01:CDS 35.0%
CCACGTGTCATAATACATTT+AGG - Chr3:83256880-83256899 None:intergenic 35.0%
CCTAAATGTATTATGACACG+TGG + Chr3:83256877-83256896 MsG0380016424.01.T01:intron 35.0%
CTAATCTGACCCTGTTAAAT+TGG + Chr3:83257500-83257519 MsG0380016424.01.T01:intron 35.0%
CTACTAATGAACACCTTATG+TGG - Chr3:83255933-83255952 None:intergenic 35.0%
CTCTTAGTAGCGAATTCTTA+AGG + Chr3:83256720-83256739 MsG0380016424.01.T01:intron 35.0%
GAAATCAAAGATGTTTCAGG+AGG - Chr3:83257358-83257377 None:intergenic 35.0%
GACAAAAAACCACATTGTTG+AGG + Chr3:83257429-83257448 MsG0380016424.01.T01:intron 35.0%
GGAATTAGTAGTAGTGATTG+AGG - Chr3:83254721-83254740 None:intergenic 35.0%
GTAAACAAAAAGGCAAGCAA+AGG - Chr3:83257559-83257578 None:intergenic 35.0%
TCATGATTGCACTTCATATG+AGG - Chr3:83256330-83256349 None:intergenic 35.0%
TGACAAAGCAATGAACATGT+AGG - Chr3:83256099-83256118 None:intergenic 35.0%
TTAGTAGCGAATTCTTAAGG+AGG + Chr3:83256723-83256742 MsG0380016424.01.T01:intron 35.0%
! ATGAGGCTTAGTAGAAGTTT+TGG - Chr3:83256313-83256332 None:intergenic 35.0%
! ATGTCTCTCTTTTCTCTTGT+GGG + Chr3:83256508-83256527 MsG0380016424.01.T01:intron 35.0%
! ATTGAATTGCTTTGAGTACC+GGG - Chr3:83256925-83256944 None:intergenic 35.0%
! CACATAAGGTGTTCATTAGT+AGG + Chr3:83255931-83255950 MsG0380016424.01.T01:intron 35.0%
! CACTTGTTTATGAGGTATTC+AGG + Chr3:83254757-83254776 MsG0380016424.01.T01:intron 35.0%
! CATTGAATTGCTTTGAGTAC+CGG - Chr3:83256926-83256945 None:intergenic 35.0%
! CTCATAAGCACATTAGTTTC+GGG - Chr3:83255307-83255326 None:intergenic 35.0%
! CTGCTCTAATTTGATGACAT+TGG - Chr3:83255720-83255739 None:intergenic 35.0%
! TCTGCTGTATTGATAGGAAA+TGG - Chr3:83256229-83256248 None:intergenic 35.0%
AAAAAGGGTTGCTACTCAAG+AGG + Chr3:83256694-83256713 MsG0380016424.01.T01:intron 40.0%
AAAACACAATGCTGGGTCTT+TGG - Chr3:83254946-83254965 None:intergenic 40.0%
AAACACAATGCTGGGTCTTT+GGG - Chr3:83254945-83254964 None:intergenic 40.0%
AAGTGAATTGTAGGAAGGAG+TGG - Chr3:83254742-83254761 None:intergenic 40.0%
AATGAACACCTTATGTGGTC+AGG - Chr3:83255928-83255947 None:intergenic 40.0%
AATGCTAGGACTGATCTAAG+AGG + Chr3:83256258-83256277 MsG0380016424.01.T01:intron 40.0%
AGATGGTCAAAACACAATGC+TGG - Chr3:83254954-83254973 None:intergenic 40.0%
AGGATGATGTTGTAGCTGAA+TGG + Chr3:83256050-83256069 MsG0380016424.01.T01:CDS 40.0%
ATCTTAGACTGTTAGGCTCT+TGG + Chr3:83255556-83255575 MsG0380016424.01.T01:intron 40.0%
CATGGAATTTCACATGCACA+TGG - Chr3:83255010-83255029 None:intergenic 40.0%
CATGTTCATTGCTTTGTCAG+TGG + Chr3:83256100-83256119 MsG0380016424.01.T01:CDS 40.0%
CATTTCACAGAAGGAATGGA+AGG - Chr3:83256007-83256026 None:intergenic 40.0%
CGGTACTCAAAGCAATTCAA+TGG + Chr3:83256924-83256943 MsG0380016424.01.T01:intron 40.0%
CTTCAATTTCAAACCCCGTT+AGG + Chr3:83256415-83256434 MsG0380016424.01.T01:intron 40.0%
CTTCCATTCCTTCTGTGAAA+TGG + Chr3:83256005-83256024 MsG0380016424.01.T01:intron 40.0%
GAAGAAAGGCAAAAAGAGCT+TGG - Chr3:83257693-83257712 None:intergenic 40.0%
GATGGTCAAAACACAATGCT+GGG - Chr3:83254953-83254972 None:intergenic 40.0%
TACAAGGCTTTCTTCCCAAT+AGG - Chr3:83256482-83256501 None:intergenic 40.0%
TACTGGATTCCAGAAGCAAA+AGG - Chr3:83255254-83255273 None:intergenic 40.0%
TAGAGAGATGTGGTGCTTAT+TGG + Chr3:83256610-83256629 MsG0380016424.01.T01:intron 40.0%
TCCAATACCAAGTAGGCAAA+AGG - Chr3:83255756-83255775 None:intergenic 40.0%
TCTCCAGTACCTCATAAGTT+GGG - Chr3:83256443-83256462 None:intergenic 40.0%
TCTTAGACTGTTAGGCTCTT+GGG + Chr3:83255557-83255576 MsG0380016424.01.T01:intron 40.0%
TGGGATAGAATGTAGGTTCT+TGG - Chr3:83255662-83255681 None:intergenic 40.0%
TTCTTTAACCGTTGCCCTAA+AGG - Chr3:83255826-83255845 None:intergenic 40.0%
TTGTGGGCTCCAAATAGTAT+TGG + Chr3:83256524-83256543 MsG0380016424.01.T01:intron 40.0%
! AAGGCACTTGTTAGCATTTG+TGG - Chr3:83255807-83255826 None:intergenic 40.0%
! ACCTTTTGCCTACTTGGTAT+TGG + Chr3:83255752-83255771 MsG0380016424.01.T01:intron 40.0%
! GAGGTTACTTTAGAGAGATG+TGG + Chr3:83256600-83256619 MsG0380016424.01.T01:intron 40.0%
! GATGTCTCTCTTTTCTCTTG+TGG + Chr3:83256507-83256526 MsG0380016424.01.T01:intron 40.0%
! GATTAGCTGTTAAGTCACAG+TGG - Chr3:83255682-83255701 None:intergenic 40.0%
! GCAAATTAGAGCATCCACAT+TGG + Chr3:83256389-83256408 MsG0380016424.01.T01:intron 40.0%
! GTCTTTACCTTTTGCCTACT+TGG + Chr3:83255746-83255765 MsG0380016424.01.T01:intron 40.0%
! TGATGACTTCCTTTTGCTTC+TGG + Chr3:83255242-83255261 MsG0380016424.01.T01:intron 40.0%
!! ACGTGGTTGGATTCTTGTTT+TGG + Chr3:83256894-83256913 MsG0380016424.01.T01:intron 40.0%
!! GATGGAAAGGAGTACCTATT+GGG + Chr3:83256465-83256484 MsG0380016424.01.T01:intron 40.0%
!! TAGCTTGTTCCTCAACAATG+TGG - Chr3:83257441-83257460 None:intergenic 40.0%
!!! CGTGGTTGGATTCTTGTTTT+GGG + Chr3:83256895-83256914 MsG0380016424.01.T01:intron 40.0%
AAACGAGCGGATCAGTTACA+AGG + Chr3:83257613-83257632 MsG0380016424.01.T01:CDS 45.0%
AACGAGCGGATCAGTTACAA+GGG + Chr3:83257614-83257633 MsG0380016424.01.T01:CDS 45.0%
AAGGCGAAAAGCAGCAAAAG+TGG - Chr3:83257160-83257179 None:intergenic 45.0%
AGAGAGACATCAGCTGTACA+AGG - Chr3:83256498-83256517 None:intergenic 45.0%
AGAGCTTGGAAGTTGGACAT+TGG - Chr3:83257679-83257698 None:intergenic 45.0%
AGATCGTCCTCCTGAAAAGT+TGG + Chr3:83257648-83257667 MsG0380016424.01.T01:CDS 45.0%
CTAAAATGCAGGCATGCCAA+TGG + Chr3:83257051-83257070 MsG0380016424.01.T01:intron 45.0%
CTAGTTCATGTCACTCTTGC+TGG + Chr3:83257458-83257477 MsG0380016424.01.T01:intron 45.0%
CTCTCCAGTACCTCATAAGT+TGG - Chr3:83256444-83256463 None:intergenic 45.0%
CTGTGAAATGGCAGTTGAGA+GGG + Chr3:83256017-83256036 MsG0380016424.01.T01:intron 45.0%
GAGCTTGGAAGTTGGACATT+GGG - Chr3:83257678-83257697 None:intergenic 45.0%
GATCGTCCTCCTGAAAAGTT+GGG + Chr3:83257649-83257668 MsG0380016424.01.T01:CDS 45.0%
GGCAAAAAGAGCTTGGAAGT+TGG - Chr3:83257686-83257705 None:intergenic 45.0%
GTCACAGTGGGATAGAATGT+AGG - Chr3:83255669-83255688 None:intergenic 45.0%
GTTGAGAGGGTGGTATATGA+AGG + Chr3:83256030-83256049 MsG0380016424.01.T01:intron 45.0%
TAAACTCAGCAGCTAGATCC+AGG - Chr3:83256135-83256154 None:intergenic 45.0%
TCTGTGAAATGGCAGTTGAG+AGG + Chr3:83256016-83256035 MsG0380016424.01.T01:intron 45.0%
! ATTGGGCTTCCCAACTTTTC+AGG - Chr3:83257661-83257680 None:intergenic 45.0%
! CTCAACTGCCATTTCACAGA+AGG - Chr3:83256016-83256035 None:intergenic 45.0%
! CTCATAAGTTGGGTGCCTAA+CGG - Chr3:83256433-83256452 None:intergenic 45.0%
! CTGCCATTTCACAGAAGGAA+TGG - Chr3:83256011-83256030 None:intergenic 45.0%
! GAAGCTTCAAATTTTGCCGG+AGG - Chr3:83255584-83255603 None:intergenic 45.0%
! TCATAAGTTGGGTGCCTAAC+GGG - Chr3:83256432-83256451 None:intergenic 45.0%
! TTGGCATGCCTGCATTTTAG+AGG - Chr3:83257051-83257070 None:intergenic 45.0%
!! AACAAGTGCCTTTAGGGCAA+CGG + Chr3:83255815-83255834 MsG0380016424.01.T01:intron 45.0%
!! ATGCCAATGGAGGGTATCTT+AGG + Chr3:83257064-83257083 MsG0380016424.01.T01:intron 45.0%
!! CGATGGAAAGGAGTACCTAT+TGG + Chr3:83256464-83256483 MsG0380016424.01.T01:intron 45.0%
!! CTGTTTTCAGGGAAAACGAG+CGG + Chr3:83257600-83257619 MsG0380016424.01.T01:intron 45.0%
!! GAGGAGCATCTGAAAGATGA+TGG - Chr3:83254699-83254718 None:intergenic 45.0%
!!! ATTCTTGTTTTGGGCATGCC+CGG + Chr3:83256904-83256923 MsG0380016424.01.T01:intron 45.0%
AAATGCAGGCATGCCAATGG+AGG + Chr3:83257054-83257073 MsG0380016424.01.T01:intron 50.0%
AATGCAGGCATGCCAATGGA+GGG + Chr3:83257055-83257074 MsG0380016424.01.T01:intron 50.0%
CCAGCAATTCTGGATGCTCT+TGG - Chr3:83256965-83256984 None:intergenic 50.0%
CGTTAGGCACCCAACTTATG+AGG + Chr3:83256431-83256450 MsG0380016424.01.T01:intron 50.0%
CTGCCTAAGATACCCTCCAT+TGG - Chr3:83257070-83257089 None:intergenic 50.0%
GCACCCAACTTATGAGGTAC+TGG + Chr3:83256437-83256456 MsG0380016424.01.T01:intron 50.0%
TGAAATGGCAGTTGAGAGGG+TGG + Chr3:83256020-83256039 MsG0380016424.01.T01:intron 50.0%
! CATAAGTTGGGTGCCTAACG+GGG - Chr3:83256431-83256450 None:intergenic 50.0%
! TAGGGTGTCCTGACCACATA+AGG + Chr3:83255917-83255936 MsG0380016424.01.T01:intron 50.0%
!! CCAAGAGCATCCAGAATTGC+TGG + Chr3:83256962-83256981 MsG0380016424.01.T01:intron 50.0%
!! TATGAGGTACTGGAGAGCGA+TGG + Chr3:83256447-83256466 MsG0380016424.01.T01:intron 50.0%
!! TGTTGGGGCCTCTAAAATGC+AGG + Chr3:83257040-83257059 MsG0380016424.01.T01:intron 50.0%
AAAGCCTAGCTCGAGTCTGC+GGG - Chr3:83256288-83256307 None:intergenic 55.0%
CAAAGCCTAGCTCGAGTCTG+CGG - Chr3:83256289-83256308 None:intergenic 55.0%
CTCAGCAGCTAGATCCAGGA+AGG - Chr3:83256131-83256150 None:intergenic 55.0%
GCAGCTAGATCCAGGAAGGT+AGG - Chr3:83256127-83256146 None:intergenic 55.0%
TGTCAGTGGTCCTACCTTCC+TGG + Chr3:83256114-83256133 MsG0380016424.01.T01:CDS 55.0%
TGTTAGGCTCTTGGGTCCTC+CGG + Chr3:83255565-83255584 MsG0380016424.01.T01:CDS 55.0%
! GGTACTGGAGAGCGATGGAA+AGG + Chr3:83256452-83256471 MsG0380016424.01.T01:intron 55.0%
!! GGGCTTCCCAACTTTTCAGG+AGG - Chr3:83257658-83257677 None:intergenic 55.0%
TACTCCCGCAGACTCGAGCT+AGG + Chr3:83256281-83256300 MsG0380016424.01.T01:intron 60.0%
Chromosome Type Strat End Strand Name
Chr3 gene 83254687 83257774 83254687 ID=MsG0380016424.01;Name=MsG0380016424.01
Chr3 mRNA 83254687 83257774 83254687 ID=MsG0380016424.01.T01;Parent=MsG0380016424.01;Name=MsG0380016424.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|4|0|193
Chr3 exon 83254687 83254770 83254687 ID=MsG0380016424.01.T01:exon:14024;Parent=MsG0380016424.01.T01
Chr3 exon 83255563 83255739 83255563 ID=MsG0380016424.01.T01:exon:14025;Parent=MsG0380016424.01.T01
Chr3 exon 83256031 83256186 83256031 ID=MsG0380016424.01.T01:exon:14026;Parent=MsG0380016424.01.T01
Chr3 exon 83257610 83257774 83257610 ID=MsG0380016424.01.T01:exon:14027;Parent=MsG0380016424.01.T01
Chr3 CDS 83254687 83254770 83254687 ID=MsG0380016424.01.T01:cds;Parent=MsG0380016424.01.T01
Chr3 CDS 83255563 83255739 83255563 ID=MsG0380016424.01.T01:cds;Parent=MsG0380016424.01.T01
Chr3 CDS 83256031 83256186 83256031 ID=MsG0380016424.01.T01:cds;Parent=MsG0380016424.01.T01
Chr3 CDS 83257610 83257774 83257610 ID=MsG0380016424.01.T01:cds;Parent=MsG0380016424.01.T01
Gene Sequence

>MsG0380016424.01.T01

ATGTTAAAGCCATCATCTTTCAGATGCTCCTCCTCAATCACTACTACTAATTCCACTCCTTCCTACAATTCACTTGTTTATGAGACTGTTAGGCTCTTGGGTCCTCCGGCAAAATTTGAAGCTTCAAAACTGAAGGTTGTTCTATTGGAAGATCAGATTAACAGATATGCAAGTATTATTCCAAGAACCTACATTCTATCCCACTGTGACTTAACAGCTAATCTCACTTTAGCTGTTTCCAATGTCATCAAATTAGAGCAGTTGAGAGGGTGGTATATGAAGGATGATGTTGTAGCTGAATGGAAGAAAGTGAAAAATGAAATGTGCCTACATGTTCATTGCTTTGTCAGTGGTCCTACCTTCCTGGATCTAGCTGCTGAGTTTAGATATCACATATTCTCCAAGGAAATGACTTTGGGAAAACGAGCGGATCAGTTACAAGGGTTGATAAACAGAGATCGTCCTCCTGAAAAGTTGGGAAGCCCAATGTCCAACTTCCAAGCTCTTTTTGCCTTTCTTCTTTCAAATGTATTACTGGTAACTTGGTTGATTTGTTTATATCCCGATTCTTTCCTCAGCTAG

Protein sequence

>MsG0380016424.01.T01

MLKPSSFRCSSSITTTNSTPSYNSLVYETVRLLGPPAKFEASKLKVVLLEDQINRYASIIPRTYILSHCDLTANLTLAVSNVIKLEQLRGWYMKDDVVAEWKKVKNEMCLHVHCFVSGPTFLDLAAEFRYHIFSKEMTLGKRADQLQGLINRDRPPEKLGSPMSNFQALFAFLLSNVLLVTWLICLYPDSFLS*