AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015439.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015439.01.T01 MTR_3g070100 93.787 338 5 1 3 324 33 370 0.0 650
MsG0380015439.01.T01 MTR_3g070110 91.667 216 18 0 327 542 1 216 7.14e-135 390
MsG0380015439.01.T01 MTR_0776s0010 24.940 417 259 16 2 382 271 669 3.10e-22 102
MsG0380015439.01.T01 MTR_2g008030 31.852 270 164 8 70 323 67 332 5.91e-22 97.8
MsG0380015439.01.T01 MTR_5g081860 40.000 160 76 6 347 497 48 196 1.23e-18 86.7
MsG0380015439.01.T01 MTR_6g035305 28.205 273 168 8 70 322 67 331 1.63e-18 87.4
MsG0380015439.01.T01 MTR_7g066120 29.210 291 163 11 69 323 125 408 1.86e-18 88.2
MsG0380015439.01.T01 MTR_5g088010 57.143 77 27 4 418 493 57 128 4.62e-16 78.6
MsG0380015439.01.T01 MTR_8g063600 34.337 166 93 6 335 493 17 173 6.23e-16 79.0
MsG0380015439.01.T01 MTR_5g069710 37.209 129 68 2 375 497 80 201 7.48e-15 75.9
MsG0380015439.01.T01 MTR_5g027570 36.879 141 78 4 364 500 32 165 1.06e-14 74.3
MsG0380015439.01.T01 MTR_3g104370 38.462 117 56 2 376 492 58 158 5.81e-14 72.0
MsG0380015439.01.T01 MTR_5g027550 45.946 74 37 1 396 466 49 122 6.61e-14 71.6
MsG0380015439.01.T01 MTR_3g462790 50.000 80 33 1 418 497 144 216 6.70e-14 73.2
MsG0380015439.01.T01 MTR_7g067080 40.708 113 53 3 385 497 111 209 7.57e-14 73.2
MsG0380015439.01.T01 MTR_5g088060 58.904 73 24 4 422 493 273 340 1.02e-13 73.9
MsG0380015439.01.T01 MTR_5g488160 58.904 73 24 4 422 493 273 340 1.02e-13 73.9
MsG0380015439.01.T01 MTR_8g063870 37.324 142 65 6 358 496 42 162 1.68e-13 71.2
MsG0380015439.01.T01 MTR_1g048660 59.259 54 22 0 413 466 4 57 4.49e-13 65.5
MsG0380015439.01.T01 MTR_4g107230 33.333 117 66 2 350 466 25 129 2.31e-12 68.2
MsG0380015439.01.T01 MTR_1g111830 49.367 79 33 2 418 496 121 192 3.39e-12 67.0
MsG0380015439.01.T01 MTR_2g090305 46.667 75 33 2 420 494 27 94 7.32e-12 64.7
MsG0380015439.01.T01 MTR_4g093620 26.449 276 160 13 74 322 124 383 1.08e-11 67.0
MsG0380015439.01.T01 MTR_4g015130 45.333 75 34 1 429 503 1 68 3.13e-11 60.1
MsG0380015439.01.T01 MTR_4g100630 42.353 85 42 1 412 496 86 163 6.38e-11 64.3
MsG0380015439.01.T01 MTR_4g111975 44.304 79 37 2 418 496 135 206 6.45e-11 63.9
MsG0380015439.01.T01 MTR_6g092540 51.724 58 26 1 409 466 87 142 9.41e-11 63.5
MsG0380015439.01.T01 MTR_5g037080 50.000 54 27 0 413 466 94 147 9.61e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015439.01.T01 AT3G55800 80.000 340 50 1 3 324 38 377 0.0 576
MsG0380015439.01.T01 AT1G43670 30.566 265 166 5 73 322 70 331 3.74e-22 98.2
MsG0380015439.01.T01 AT5G05790 40.458 131 66 3 375 501 82 204 8.92e-18 84.3
MsG0380015439.01.T01 AT5G05790 40.458 131 66 3 375 501 82 204 8.92e-18 84.3
MsG0380015439.01.T01 AT3G11280 51.190 84 34 1 418 501 124 200 6.65e-17 81.3
MsG0380015439.01.T01 AT3G11280 51.190 84 34 1 418 501 124 200 6.65e-17 81.3
MsG0380015439.01.T01 AT5G01200 52.381 84 33 2 414 497 139 215 1.48e-16 80.5
MsG0380015439.01.T01 AT2G38090 37.069 116 63 2 385 497 102 210 8.73e-15 75.5
MsG0380015439.01.T01 AT5G58900 44.681 94 45 1 404 497 124 210 1.49e-14 74.7
MsG0380015439.01.T01 AT5G64380 26.415 318 181 15 40 322 90 389 1.60e-14 76.3
MsG0380015439.01.T01 AT5G08520 35.632 174 85 9 338 495 23 185 5.71e-14 73.2
MsG0380015439.01.T01 AT4G09450 39.837 123 61 4 396 512 66 181 7.48e-13 68.2
MsG0380015439.01.T01 AT5G04760 49.367 79 33 2 418 496 96 167 2.06e-12 67.0
MsG0380015439.01.T01 AT1G19000 50.877 57 28 0 410 466 91 147 1.08e-11 66.2
MsG0380015439.01.T01 AT1G19000 50.877 57 28 0 410 466 91 147 1.08e-11 66.2
MsG0380015439.01.T01 AT1G70000 41.096 73 41 1 396 466 71 143 2.33e-11 64.7
MsG0380015439.01.T01 AT1G70000 41.096 73 41 1 396 466 71 143 2.33e-11 64.7
MsG0380015439.01.T01 AT5G47390 44.444 81 38 1 412 492 87 160 2.65e-11 65.9
MsG0380015439.01.T01 AT1G49010 45.570 79 36 2 418 496 131 202 2.69e-11 65.5
MsG0380015439.01.T01 AT3G10580 46.835 79 33 1 418 496 92 161 4.12e-11 63.9
MsG0380015439.01.T01 AT3G10580 46.835 79 33 1 418 496 92 161 4.95e-11 64.3

Find 104 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTGTCTAGCACAGATTTA+TGG 0.166276 3:-70227023 None:intergenic
TTGAAATCAAGCTCTTTATT+TGG 0.186892 3:+70224627 MsG0380015439.01.T01:CDS
ACACAATGTGTTAACTCTTT+TGG 0.201562 3:+70225020 MsG0380015439.01.T01:CDS
TCAACCAATAATCATCTTCT+TGG 0.216049 3:-70230360 None:intergenic
CATGATCTTTATCACATTCT+TGG 0.225450 3:-70231027 None:intergenic
ATTTCCAAGAAGATGATTAT+TGG 0.238910 3:+70230356 MsG0380015439.01.T01:CDS
GACTCATATGCGTGGTTATT+TGG 0.243758 3:+70230944 MsG0380015439.01.T01:CDS
ATAACTACTCTTGATCTTCT+TGG 0.251399 3:+70230914 MsG0380015439.01.T01:CDS
CAATTCATATTTCAGGAAAA+TGG 0.261597 3:+70226451 MsG0380015439.01.T01:intron
AGTTCTATTGTTATTATTAT+CGG 0.281602 3:-70230527 None:intergenic
CACTTATGTACTTGCACTTA+AGG 0.290701 3:+70226162 MsG0380015439.01.T01:CDS
GATAGAACTCAAGTTGCTTA+TGG 0.316106 3:+70227063 MsG0380015439.01.T01:CDS
TTCACAGTAGGCACCATCTT+TGG 0.339734 3:+70226058 MsG0380015439.01.T01:CDS
GTTGCATTTGACCCTCTTGA+TGG 0.343626 3:+70226013 MsG0380015439.01.T01:CDS
GATCAAAGAATGAGGTCATT+AGG 0.344384 3:+70227085 MsG0380015439.01.T01:CDS
TTGTTTGAGGTAGCTCCATT+AGG 0.352175 3:+70226961 MsG0380015439.01.T01:CDS
AATGTGGCTCTCAAATTTCC+AGG 0.356367 3:-70226522 None:intergenic
TTTGAGCATGGCTTGCTACT+TGG 0.356659 3:-70230811 None:intergenic
AAAATATCAAAAGGAAACTT+AGG 0.373972 3:+70230876 MsG0380015439.01.T01:CDS
CTCAACTTGGCTTTGGCAGT+TGG 0.380041 3:-70226934 None:intergenic
AATGTAGACCTTAGCATAAT+CGG 0.386240 3:-70226553 None:intergenic
CATTCAAGAAAGTGGTTCAT+TGG 0.387227 3:+70230578 MsG0380015439.01.T01:CDS
GTCAAAGAAACTCATGAAAT+CGG 0.387479 3:+70226480 MsG0380015439.01.T01:CDS
AGAATGGTAGAGAATATTCT+AGG 0.388611 3:+70230307 MsG0380015439.01.T01:CDS
CAGATTATTGTAAAAGAAAA+GGG 0.391090 3:+70226889 MsG0380015439.01.T01:intron
GCAGATTATTGTAAAAGAAA+AGG 0.393674 3:+70226888 MsG0380015439.01.T01:intron
CCTCCCATGTCTTGAAGCTC+AGG 0.399582 3:-70225863 None:intergenic
GATAAGTTGATTGGAGTAAC+AGG 0.403692 3:+70226094 MsG0380015439.01.T01:CDS
GCAAGTACATAAGTGGTTCT+AGG 0.415518 3:-70226154 None:intergenic
TTGAGCATGGCTTGCTACTT+GGG 0.417939 3:-70230810 None:intergenic
AATTATGACATACCATCAAC+TGG 0.427130 3:-70225887 None:intergenic
CAACAGTCTCAACTTGGCTT+TGG 0.442108 3:-70226941 None:intergenic
TATTTGTAGGCGTTTCTTGA+AGG 0.450413 3:+70230718 MsG0380015439.01.T01:intron
TAAGGGACTGATTAGGTTGA+TGG 0.455534 3:+70224935 MsG0380015439.01.T01:CDS
AGATCAAGTTGCTGCAGCTA+TGG 0.458553 3:+70226120 MsG0380015439.01.T01:CDS
GTCAAAGGCGACACCGGATA+AGG 0.461477 3:+70224917 MsG0380015439.01.T01:CDS
AAATATCAAAAGGAAACTTA+GGG 0.461487 3:+70230877 MsG0380015439.01.T01:CDS
AGATGATTATTGGTTGATGA+AGG 0.467158 3:+70230366 MsG0380015439.01.T01:CDS
GACATGGGAGGTCCAGTTGA+TGG 0.468525 3:+70225875 MsG0380015439.01.T01:CDS
TCAAAGGCGACACCGGATAA+GGG 0.472586 3:+70224918 MsG0380015439.01.T01:CDS
AAAGTGGAAAGAAATCTCTA+AGG 0.472931 3:+70230763 MsG0380015439.01.T01:CDS
AAAGAAATCATTCAAGAAAG+TGG 0.476326 3:+70230570 MsG0380015439.01.T01:CDS
AACCTAATCAGTCCCTTATC+CGG 0.476945 3:-70224930 None:intergenic
GCAGAAGTGAGAGTGTTTCA+AGG 0.477074 3:-70225816 None:intergenic
GGACTCTTGATTGAAAATGC+TGG 0.481565 3:+70226982 MsG0380015439.01.T01:CDS
ATTTGTAGGCGTTTCTTGAA+GGG 0.494586 3:+70230719 MsG0380015439.01.T01:intron
CTCAAACAACAGTCTCAACT+TGG 0.497480 3:-70226947 None:intergenic
GATCAAGAGTAGTTATATCA+TGG 0.499404 3:-70230907 None:intergenic
AACATCCGGCACCATTCCTC+CGG 0.502390 3:-70226705 None:intergenic
TACACGGCAAAGACGGAAAG+TGG 0.504210 3:+70230747 MsG0380015439.01.T01:CDS
GCATGGCTTGCTACTTGGGA+TGG 0.505418 3:-70230806 None:intergenic
TAGGCACCATCTTTGGTGTA+TGG 0.505757 3:+70226065 MsG0380015439.01.T01:CDS
CTTAAGTGCAAGTACATAAG+TGG 0.510456 3:-70226161 None:intergenic
TCTTGTCGTCTTCAATCACT+TGG 0.511899 3:-70230970 None:intergenic
GATCAAGTTGCTGCAGCTAT+GGG 0.517665 3:+70226121 MsG0380015439.01.T01:CDS
CATCGAAGAAAGTAGTAGAA+TGG 0.523965 3:+70230291 MsG0380015439.01.T01:CDS
ACCATCTTTGGTGTATGGCC+TGG 0.525808 3:+70226070 MsG0380015439.01.T01:CDS
CACCGGATAAGGGACTGATT+AGG 0.526285 3:+70224928 MsG0380015439.01.T01:CDS
CAAGTTGAGACTGTTGTTTG+AGG 0.526367 3:+70226948 MsG0380015439.01.T01:CDS
TGGCCTGGTGATAAGTTGAT+TGG 0.529285 3:+70226085 MsG0380015439.01.T01:CDS
ACCAGGCCATACACCAAAGA+TGG 0.537327 3:-70226071 None:intergenic
GTAGGAAGAATTCTTGTCAA+AGG 0.549312 3:+70224902 MsG0380015439.01.T01:intron
GATTAGGTTGATGGTGTGCA+TGG 0.550231 3:+70224944 MsG0380015439.01.T01:CDS
CTTGCACTTAAGGACTTCCC+CGG 0.558366 3:+70226172 MsG0380015439.01.T01:CDS
GGACTTCTACACGGCAAAGA+CGG 0.559413 3:+70230740 MsG0380015439.01.T01:CDS
AAAAGAACCTGGTTAACATC+CGG 0.559892 3:-70226719 None:intergenic
GAAGGAAAACTATTCTCCCC+TGG 0.561589 3:+70226504 MsG0380015439.01.T01:CDS
TGACAATGCCGATTATGCTA+AGG 0.563202 3:+70226545 MsG0380015439.01.T01:CDS
GCAACTTGCAGTGGATATGC+TGG 0.564658 3:+70225049 MsG0380015439.01.T01:CDS
AATGGTGCCGGATGTTAACC+AGG 0.565507 3:+70226712 MsG0380015439.01.T01:CDS
AATCCCTGAGCTTCAAGACA+TGG 0.568565 3:+70225859 MsG0380015439.01.T01:CDS
GCTGGAGGTTACAGCAGTGA+TGG 0.571612 3:+70227000 MsG0380015439.01.T01:CDS
ATTGAGATACACCGGAGGAA+TGG 0.572312 3:+70226694 MsG0380015439.01.T01:CDS
CCATAAATCTGTGCTAGACA+AGG 0.577457 3:+70227023 MsG0380015439.01.T01:CDS
GTAGACACAAATTTCACAGT+AGG 0.585426 3:+70226046 MsG0380015439.01.T01:CDS
TGGGGATGAGCAACTTGCAG+TGG 0.586212 3:+70225040 MsG0380015439.01.T01:CDS
ATCCCTGAGCTTCAAGACAT+GGG 0.586854 3:+70225860 MsG0380015439.01.T01:CDS
ATTCTTGTCAAAGGCGACAC+CGG 0.589868 3:+70224911 MsG0380015439.01.T01:CDS
ATACATATGAACATATCAAG+TGG 0.590413 3:-70231062 None:intergenic
CTCCCATGTCTTGAAGCTCA+GGG 0.593677 3:-70225862 None:intergenic
TTCTTGAAGGGACTTCTACA+CGG 0.594579 3:+70230731 MsG0380015439.01.T01:CDS
GTGAAGACAGCTTCTTGTGG+TGG 0.596604 3:+70224996 MsG0380015439.01.T01:CDS
GAAGACGACAAGAATAACAA+TGG 0.599172 3:+70230980 MsG0380015439.01.T01:CDS
TCAGCACAACATCGATGAAG+TGG 0.609150 3:+70230420 MsG0380015439.01.T01:CDS
GAAACTCATGAAATCGGAGA+AGG 0.610941 3:+70226486 MsG0380015439.01.T01:CDS
CTCTTGATTGAAAATGCTGG+AGG 0.611258 3:+70226985 MsG0380015439.01.T01:CDS
ATGTGGCTCTCAAATTTCCA+GGG 0.611538 3:-70226521 None:intergenic
ATACACCGGAGGAATGGTGC+CGG 0.622946 3:+70226700 MsG0380015439.01.T01:CDS
TGCTTATGGATCAAAGAATG+AGG 0.624161 3:+70227077 MsG0380015439.01.T01:CDS
CAATAGAACTACGAATATCG+TGG 0.625780 3:+70230540 MsG0380015439.01.T01:CDS
AAATACACATTGAGATACAC+CGG 0.625848 3:+70226686 MsG0380015439.01.T01:CDS
TTATTATTATCGGTTGCATG+AGG 0.632701 3:-70230517 None:intergenic
ATAATCGGCATTGTCAAATG+TGG 0.638429 3:-70226538 None:intergenic
ACTCCAATCAACTTATCACC+AGG 0.643314 3:-70226088 None:intergenic
GCACAACATCGATGAAGTGG+TGG 0.645554 3:+70230423 MsG0380015439.01.T01:CDS
ACTATGCTTGAACCATCAAG+AGG 0.650576 3:-70226025 None:intergenic
ATTAGGTTGATGGTGTGCAT+GGG 0.661036 3:+70224945 MsG0380015439.01.T01:CDS
AATATCAAAAGGAAACTTAG+GGG 0.670754 3:+70230878 MsG0380015439.01.T01:CDS
AAAGTGAAGACAGCTTCTTG+TGG 0.674964 3:+70224993 MsG0380015439.01.T01:CDS
CTATGCTTGAACCATCAAGA+GGG 0.684004 3:-70226024 None:intergenic
CCTGAGCTTCAAGACATGGG+AGG 0.706034 3:+70225863 MsG0380015439.01.T01:CDS
TGTGGCTCTCAAATTTCCAG+GGG 0.715588 3:-70226520 None:intergenic
TACACATTGAGATACACCGG+AGG 0.744654 3:+70226689 MsG0380015439.01.T01:CDS
GAAGTGATGACTCATATGCG+TGG 0.764866 3:+70230936 MsG0380015439.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATATAATTTATGTTCAAA+TGG + Chr3:70227290-70227309 MsG0380015439.01.T01:intron 10.0%
!! ATGAAATAAAGAAAAAAAAA+AGG - Chr3:70225557-70225576 None:intergenic 10.0%
!!! TAAAAACAATTAGAAATTTT+TGG - Chr3:70229151-70229170 None:intergenic 10.0%
!!! TAATTGTTTTTATATTTTTG+AGG + Chr3:70229159-70229178 MsG0380015439.01.T01:intron 10.0%
!!! TATTCTTTTTTTTTTTTTGA+AGG - Chr3:70229576-70229595 None:intergenic 10.0%
!!! TTCTAGTATATTATTTTTAA+GGG + Chr3:70228918-70228937 MsG0380015439.01.T01:intron 10.0%
!!! TTTCTAGTATATTATTTTTA+AGG + Chr3:70228917-70228936 MsG0380015439.01.T01:intron 10.0%
!!! TTTTCAATTTTCAAATAAAA+GGG + Chr3:70229455-70229474 MsG0380015439.01.T01:intron 10.0%
!! AAAATTTCAAAATGAAATGT+AGG - Chr3:70227185-70227204 None:intergenic 15.0%
!! AAACAAGAATATAATCTTTA+AGG - Chr3:70229438-70229457 None:intergenic 15.0%
!! AAACAATTAAAATCTATGAA+AGG + Chr3:70225461-70225480 MsG0380015439.01.T01:intron 15.0%
!! AGAGAAAATAAAATTTAACA+AGG - Chr3:70225420-70225439 None:intergenic 15.0%
!! CAAGTTTAAAAATTATACTT+AGG + Chr3:70227933-70227952 MsG0380015439.01.T01:intron 15.0%
!! CACTTATTTATCTTATAAAA+TGG - Chr3:70228524-70228543 None:intergenic 15.0%
!! TAAGAATGAATTCAAAATAT+AGG - Chr3:70228440-70228459 None:intergenic 15.0%
!! TCAAAAATAAATCCTAAAAT+AGG + Chr3:70227839-70227858 MsG0380015439.01.T01:intron 15.0%
!! TTTAAAAACTTCTTGTATTA+TGG - Chr3:70227411-70227430 None:intergenic 15.0%
!!! AGTTCTATTGTTATTATTAT+CGG - Chr3:70230530-70230549 None:intergenic 15.0%
!!! ATATATAATTTTTGAGTGTA+TGG + Chr3:70225952-70225971 MsG0380015439.01.T01:intron 15.0%
!!! ATTTTAGGATTTATTTTTGA+AGG - Chr3:70227839-70227858 None:intergenic 15.0%
!!! CTAAGTATAATTTTTAAACT+TGG - Chr3:70227935-70227954 None:intergenic 15.0%
!!! GTTTTCAATTTTCAAATAAA+AGG + Chr3:70229454-70229473 MsG0380015439.01.T01:intron 15.0%
!!! TAAGGTTTGTTATTTATAAA+TGG - Chr3:70229420-70229439 None:intergenic 15.0%
!!! TCTTCTCAAATATTTTATAA+GGG - Chr3:70228415-70228434 None:intergenic 15.0%
!!! TTAAATGAATATCCTATTTT+AGG - Chr3:70227854-70227873 None:intergenic 15.0%
!!! TTTCTTTATTTCATAATAGT+AGG + Chr3:70225563-70225582 MsG0380015439.01.T01:intron 15.0%
!! AAAATATCAAAAGGAAACTT+AGG + Chr3:70230876-70230895 MsG0380015439.01.T01:CDS 20.0%
!! AAATATCAAAAGGAAACTTA+GGG + Chr3:70230877-70230896 MsG0380015439.01.T01:CDS 20.0%
!! AACTTTCTACATTTATTTGT+GGG + Chr3:70228824-70228843 MsG0380015439.01.T01:intron 20.0%
!! AAGCAATGGTAAATTATATT+CGG + Chr3:70229659-70229678 MsG0380015439.01.T01:intron 20.0%
!! AATAAAATTTAACAAGGAAG+TGG - Chr3:70225414-70225433 None:intergenic 20.0%
!! AATATACTAGAAAATAGTAC+AGG - Chr3:70228910-70228929 None:intergenic 20.0%
!! AATTATCCAATTCATATTTC+AGG + Chr3:70226444-70226463 MsG0380015439.01.T01:intron 20.0%
!! AGATTTATGTGATTCTAATA+AGG + Chr3:70226241-70226260 MsG0380015439.01.T01:intron 20.0%
!! ATATACTAGAAAATAGTACA+GGG - Chr3:70228909-70228928 None:intergenic 20.0%
!! ATCATAAAACAACTTAAACA+AGG + Chr3:70229860-70229879 MsG0380015439.01.T01:intron 20.0%
!! ATGATAGCAAAAATATCAAA+AGG + Chr3:70230867-70230886 MsG0380015439.01.T01:CDS 20.0%
!! CAGATTATTGTAAAAGAAAA+GGG + Chr3:70226889-70226908 MsG0380015439.01.T01:intron 20.0%
!! CATTTAAATGTTTCAATAAC+AGG + Chr3:70228953-70228972 MsG0380015439.01.T01:intron 20.0%
!! GACCAAAAAAAACTAAAAAA+TGG + Chr3:70225739-70225758 MsG0380015439.01.T01:intron 20.0%
!! TAACTTTCTACATTTATTTG+TGG + Chr3:70228823-70228842 MsG0380015439.01.T01:intron 20.0%
!! TCAAACTCAAATAATAGTTA+TGG + Chr3:70230253-70230272 MsG0380015439.01.T01:intron 20.0%
!! TGAGTTTAATTCAGTTTATA+AGG - Chr3:70228593-70228612 None:intergenic 20.0%
!! TTAAAAAAAGCTATGACTAA+CGG - Chr3:70229793-70229812 None:intergenic 20.0%
!! TTCCATAATATTCAAAAGAT+TGG - Chr3:70227763-70227782 None:intergenic 20.0%
!! TTGACAAATGAATTTCATTT+AGG + Chr3:70228701-70228720 MsG0380015439.01.T01:intron 20.0%
!!! ACAAGAAGTTTTTAAAATTC+AGG + Chr3:70227415-70227434 MsG0380015439.01.T01:intron 20.0%
!!! AGTGAAGTAATTTTATATCA+AGG - Chr3:70226778-70226797 None:intergenic 20.0%
!!! CAAAAATTGAGATTTTGATA+TGG - Chr3:70227907-70227926 None:intergenic 20.0%
!!! CAATATTTTTAGTGATAGTT+TGG - Chr3:70225916-70225935 None:intergenic 20.0%
!!! CTTATCTCAATACAAAATTT+TGG - Chr3:70228011-70228030 None:intergenic 20.0%
!!! GTCTTCTCAAATATTTTATA+AGG - Chr3:70228416-70228435 None:intergenic 20.0%
!!! TGCCATTTTTTAGTTTTTTT+TGG - Chr3:70225744-70225763 None:intergenic 20.0%
!!! TGTTTCTATAAATGAACTTT+AGG - Chr3:70225446-70225465 None:intergenic 20.0%
!!! TTAAAAAGCATTACACATAT+TGG - Chr3:70228798-70228817 None:intergenic 20.0%
!!! TTTAGTTCTAGTCATAAATA+AGG - Chr3:70227273-70227292 None:intergenic 20.0%
!!! TTTCTTGAATGATTTCTTTT+TGG - Chr3:70230569-70230588 None:intergenic 20.0%
!!! TTTGTTTGTTTTTTTAGAAC+TGG - Chr3:70229219-70229238 None:intergenic 20.0%
! AAAGAAATCATTCAAGAAAG+TGG + Chr3:70230570-70230589 MsG0380015439.01.T01:CDS 25.0%
! AACGGTAAATTATGATTAGT+TGG - Chr3:70229747-70229766 None:intergenic 25.0%
! AACTAATTGGTGTACTTAAA+TGG - Chr3:70229951-70229970 None:intergenic 25.0%
! AATATCAAAAGGAAACTTAG+GGG + Chr3:70230878-70230897 MsG0380015439.01.T01:CDS 25.0%
! AATATTCTCATGAATTTCAG+TGG + Chr3:70227794-70227813 MsG0380015439.01.T01:intron 25.0%
! ACTAATCTATGTGCATAAAT+TGG - Chr3:70225134-70225153 None:intergenic 25.0%
! ACTTTCTACATTTATTTGTG+GGG + Chr3:70228825-70228844 MsG0380015439.01.T01:intron 25.0%
! AGATAAATTTGCCAAGTATT+TGG + Chr3:70230030-70230049 MsG0380015439.01.T01:intron 25.0%
! ATTTAACATCGATCAATATG+AGG + Chr3:70228660-70228679 MsG0380015439.01.T01:intron 25.0%
! ATTTAAGTACACCAATTAGT+TGG + Chr3:70229950-70229969 MsG0380015439.01.T01:intron 25.0%
! ATTTCCAAGAAGATGATTAT+TGG + Chr3:70230356-70230375 MsG0380015439.01.T01:CDS 25.0%
! CAATTCATATTTCAGGAAAA+TGG + Chr3:70226451-70226470 MsG0380015439.01.T01:intron 25.0%
! CTATTCAAACAAATTGTGAA+AGG - Chr3:70228869-70228888 None:intergenic 25.0%
! CTTGTATTATGGTATGTATT+TGG - Chr3:70227400-70227419 None:intergenic 25.0%
! GAAACAATAAACGATGAAAA+AGG - Chr3:70230627-70230646 None:intergenic 25.0%
! GATAAATTTGCCAAGTATTT+GGG + Chr3:70230031-70230050 MsG0380015439.01.T01:intron 25.0%
! GCAGATTATTGTAAAAGAAA+AGG + Chr3:70226888-70226907 MsG0380015439.01.T01:intron 25.0%
! TCCTTAAAAAAAAGATGAGT+TGG + Chr3:70229979-70229998 MsG0380015439.01.T01:intron 25.0%
! TGTTGATGTTTGTATATTGT+AGG + Chr3:70224884-70224903 MsG0380015439.01.T01:intron 25.0%
! TTCCTCAAGAAAATACTTTA+TGG - Chr3:70229032-70229051 None:intergenic 25.0%
! TTGAAATCAAGCTCTTTATT+TGG + Chr3:70224627-70224646 MsG0380015439.01.T01:CDS 25.0%
! TTTAAGTACACCAATTAGTT+GGG + Chr3:70229951-70229970 MsG0380015439.01.T01:intron 25.0%
!! AAACTGTTTTCATAAGCTAA+TGG - Chr3:70224857-70224876 None:intergenic 25.0%
!! AATCAACACTTAAGTTTTCA+AGG + Chr3:70224673-70224692 MsG0380015439.01.T01:CDS 25.0%
!! AATTTGTTTGAATAGGTGTT+CGG + Chr3:70228874-70228893 MsG0380015439.01.T01:intron 25.0%
!! AATTTTGGATGAATCCATAT+TGG - Chr3:70227996-70228015 None:intergenic 25.0%
!! ATATTGCATTTTATATCCAG+GGG + Chr3:70225635-70225654 MsG0380015439.01.T01:intron 25.0%
!! ATCAACACTTAAGTTTTCAA+GGG + Chr3:70224674-70224693 MsG0380015439.01.T01:CDS 25.0%
!! CAAAAAAGCAACAACTTTTA+TGG - Chr3:70229087-70229106 None:intergenic 25.0%
!! CATTTTCCTGAAATATGAAT+TGG - Chr3:70226453-70226472 None:intergenic 25.0%
!! CTTTCACAATTTGTTTGAAT+AGG + Chr3:70228867-70228886 MsG0380015439.01.T01:intron 25.0%
!! GAATTTTTACTTCTTGATGA+AGG + Chr3:70226202-70226221 MsG0380015439.01.T01:CDS 25.0%
!! GACCAATCTTTTGAATATTA+TGG + Chr3:70227758-70227777 MsG0380015439.01.T01:intron 25.0%
!! GATATTGCATTTTATATCCA+GGG + Chr3:70225634-70225653 MsG0380015439.01.T01:intron 25.0%
!! TTTTGTCATATGATAAAGCT+TGG - Chr3:70226426-70226445 None:intergenic 25.0%
!!! AAACATGTTTTGTTATGATG+AGG + Chr3:70225484-70225503 MsG0380015439.01.T01:intron 25.0%
!!! ATGTGTGAGTTTTTTTTGAA+AGG + Chr3:70228728-70228747 MsG0380015439.01.T01:intron 25.0%
!!! ATTTTTTTTAGTGGTTCTTG+AGG + Chr3:70229051-70229070 MsG0380015439.01.T01:intron 25.0%
!!! GACATGGATTTTTTATTTGT+AGG + Chr3:70230705-70230724 MsG0380015439.01.T01:intron 25.0%
!!! TACCATAAAGTATTTTCTTG+AGG + Chr3:70229027-70229046 MsG0380015439.01.T01:intron 25.0%
!!! TCTTGAGGAATTTTTTTTAG+TGG + Chr3:70229042-70229061 MsG0380015439.01.T01:intron 25.0%
!!! TGATTTCCTCAAACATTTTT+TGG - Chr3:70226327-70226346 None:intergenic 25.0%
AAACATTGTATGGTTCATCA+AGG + Chr3:70227115-70227134 MsG0380015439.01.T01:intron 30.0%
AAAGCCACATATTCATGTTA+TGG - Chr3:70225183-70225202 None:intergenic 30.0%
AAAGTGGAAAGAAATCTCTA+AGG + Chr3:70230763-70230782 MsG0380015439.01.T01:CDS 30.0%
AAATACACATTGAGATACAC+CGG + Chr3:70226686-70226705 MsG0380015439.01.T01:CDS 30.0%
AAGAAAACAGAACGAATGAA+CGG - Chr3:70229765-70229784 None:intergenic 30.0%
AAGTAAAAATTCATGAGTGC+CGG - Chr3:70226194-70226213 None:intergenic 30.0%
AATGTAGACCTTAGCATAAT+CGG - Chr3:70226556-70226575 None:intergenic 30.0%
AATTATGACATACCATCAAC+TGG - Chr3:70225890-70225909 None:intergenic 30.0%
ACAATTTAATTGTGGAGAAG+TGG - Chr3:70225694-70225713 None:intergenic 30.0%
AGAATGGTAGAGAATATTCT+AGG + Chr3:70230307-70230326 MsG0380015439.01.T01:CDS 30.0%
AGGTTTGAAGAAACATTGTA+TGG + Chr3:70227105-70227124 MsG0380015439.01.T01:intron 30.0%
AGTTGTTAAGAGTAGTTTCA+CGG + Chr3:70229883-70229902 MsG0380015439.01.T01:intron 30.0%
ATAAATAAGTGAAGTGACCA+AGG + Chr3:70228533-70228552 MsG0380015439.01.T01:intron 30.0%
ATAACTACTCTTGATCTTCT+TGG + Chr3:70230914-70230933 MsG0380015439.01.T01:CDS 30.0%
CATGATCTTTATCACATTCT+TGG - Chr3:70231030-70231049 None:intergenic 30.0%
CTTTCTACATTTATTTGTGG+GGG + Chr3:70228826-70228845 MsG0380015439.01.T01:intron 30.0%
GACAATGCATTGTAATATTC+AGG - Chr3:70228571-70228590 None:intergenic 30.0%
GATCAAGAGTAGTTATATCA+TGG - Chr3:70230910-70230929 None:intergenic 30.0%
GTAAATTCCGAATTGCTTAA+TGG - Chr3:70227351-70227370 None:intergenic 30.0%
GTCAAAGAAACTCATGAAAT+CGG + Chr3:70226480-70226499 MsG0380015439.01.T01:CDS 30.0%
TCAACCAATAATCATCTTCT+TGG - Chr3:70230363-70230382 None:intergenic 30.0%
TCAAGATAAGCAAACCAATA+TGG + Chr3:70227979-70227998 MsG0380015439.01.T01:intron 30.0%
TCATAATATACGCATCTAAC+AGG + Chr3:70225980-70225999 MsG0380015439.01.T01:intron 30.0%
TCTAGACCAAAAAATGTTTG+AGG + Chr3:70226318-70226337 MsG0380015439.01.T01:intron 30.0%
TTAGTTAGTTCCCAAATACT+TGG - Chr3:70230044-70230063 None:intergenic 30.0%
TTCGCAATGATCAACTTTAA+AGG - Chr3:70228347-70228366 None:intergenic 30.0%
TTCTTGATTGAGAAAGAATG+AGG - Chr3:70230150-70230169 None:intergenic 30.0%
TTTCTACATTTATTTGTGGG+GGG + Chr3:70228827-70228846 MsG0380015439.01.T01:intron 30.0%
! ACAATGTGTTAACTCTTTTG+GGG + Chr3:70225022-70225041 MsG0380015439.01.T01:CDS 30.0%
! ACACAATGTGTTAACTCTTT+TGG + Chr3:70225020-70225039 MsG0380015439.01.T01:CDS 30.0%
! ATGCTCAAAAGTACGAAAAA+AGG + Chr3:70230825-70230844 MsG0380015439.01.T01:CDS 30.0%
! CACAATGTGTTAACTCTTTT+GGG + Chr3:70225021-70225040 MsG0380015439.01.T01:CDS 30.0%
! GGATATTGCATTTTATATCC+AGG + Chr3:70225633-70225652 MsG0380015439.01.T01:intron 30.0%
! TTAGTCTCGTTCATTTTGTT+TGG + Chr3:70228472-70228491 MsG0380015439.01.T01:intron 30.0%
! TTATTATTATCGGTTGCATG+AGG - Chr3:70230520-70230539 None:intergenic 30.0%
! TTTTCAATCAAGAGTCCTAA+TGG - Chr3:70226979-70226998 None:intergenic 30.0%
!! AGATGATTATTGGTTGATGA+AGG + Chr3:70230366-70230385 MsG0380015439.01.T01:CDS 30.0%
!! TATAGCTTTTGAAGAAGCAA+TGG + Chr3:70229645-70229664 MsG0380015439.01.T01:intron 30.0%
!! TTATGCACATAGATTAGTCT+TGG + Chr3:70225136-70225155 MsG0380015439.01.T01:intron 30.0%
!! TTTTGAAGGATTTCAACAAG+AGG - Chr3:70227825-70227844 None:intergenic 30.0%
!!! CTCGTTTTGTTTAACGAAAT+CGG + Chr3:70227482-70227501 MsG0380015439.01.T01:intron 30.0%
!!! GCCAACTCATCTTTTTTTTA+AGG - Chr3:70229983-70230002 None:intergenic 30.0%
!!! TTTTTTCGTACTTTTGAGCA+TGG - Chr3:70230826-70230845 None:intergenic 30.0%
AAAAGAACCTGGTTAACATC+CGG - Chr3:70226722-70226741 None:intergenic 35.0%
AAATGGAAGAACGTATCACA+AGG - Chr3:70229403-70229422 None:intergenic 35.0%
AAGCAATTCGGAATTTACAC+AGG + Chr3:70227353-70227372 MsG0380015439.01.T01:intron 35.0%
AAGGAATACTCCCAACTAAT+TGG - Chr3:70229964-70229983 None:intergenic 35.0%
AATGTGTTGAGAAAAGAACC+TGG - Chr3:70226733-70226752 None:intergenic 35.0%
ACATAGTAATCGACCAACTA+AGG - Chr3:70226659-70226678 None:intergenic 35.0%
ACTCAGCATTAACAATGGAA+TGG + Chr3:70230209-70230228 MsG0380015439.01.T01:intron 35.0%
AGCTCATGGAGATAATAAGA+TGG - Chr3:70225598-70225617 None:intergenic 35.0%
AGTAAAAATTCATGAGTGCC+GGG - Chr3:70226193-70226212 None:intergenic 35.0%
AGTTCTTGTAGGAATCTCAT+TGG - Chr3:70225258-70225277 None:intergenic 35.0%
ATAATCGGCATTGTCAAATG+TGG - Chr3:70226541-70226560 None:intergenic 35.0%
ATCTAAGCATCTAGCCATTA+AGG + Chr3:70227318-70227337 MsG0380015439.01.T01:intron 35.0%
ATGTTATGGATCCAATGTCT+AGG - Chr3:70225169-70225188 None:intergenic 35.0%
ATTCCATTGTTAATGCTGAG+TGG - Chr3:70230210-70230229 None:intergenic 35.0%
ATTCCGAATTGCTTAATGGA+AGG - Chr3:70227347-70227366 None:intergenic 35.0%
ATTGAGATCAAGCAAACATG+AGG - Chr3:70227624-70227643 None:intergenic 35.0%
ATTTGTAGGCGTTTCTTGAA+GGG + Chr3:70230719-70230738 MsG0380015439.01.T01:intron 35.0%
CAATAGAACTACGAATATCG+TGG + Chr3:70230540-70230559 MsG0380015439.01.T01:CDS 35.0%
CACTTATGTACTTGCACTTA+AGG + Chr3:70226162-70226181 MsG0380015439.01.T01:CDS 35.0%
CATAGTAATCGACCAACTAA+GGG - Chr3:70226658-70226677 None:intergenic 35.0%
CATCGAAGAAAGTAGTAGAA+TGG + Chr3:70230291-70230310 MsG0380015439.01.T01:CDS 35.0%
CATTCAAGAAAGTGGTTCAT+TGG + Chr3:70230578-70230597 MsG0380015439.01.T01:CDS 35.0%
CTAGAAAATAGTACAGGGAA+CGG - Chr3:70228904-70228923 None:intergenic 35.0%
CTTAAGTGCAAGTACATAAG+TGG - Chr3:70226164-70226183 None:intergenic 35.0%
CTTCCTTCCATTAAGCAATT+CGG + Chr3:70227341-70227360 MsG0380015439.01.T01:intron 35.0%
GAAGACGACAAGAATAACAA+TGG + Chr3:70230980-70230999 MsG0380015439.01.T01:CDS 35.0%
GAGCTCACACAATTTAATTG+TGG - Chr3:70225702-70225721 None:intergenic 35.0%
GATCAAAGAATGAGGTCATT+AGG + Chr3:70227085-70227104 MsG0380015439.01.T01:CDS 35.0%
GATTGAGAAAGAATGAGGTT+GGG - Chr3:70230145-70230164 None:intergenic 35.0%
GGATCCATAACATGAATATG+TGG + Chr3:70225176-70225195 MsG0380015439.01.T01:intron 35.0%
GTAGACACAAATTTCACAGT+AGG + Chr3:70226046-70226065 MsG0380015439.01.T01:CDS 35.0%
GTAGGAAGAATTCTTGTCAA+AGG + Chr3:70224902-70224921 MsG0380015439.01.T01:intron 35.0%
GTATGTATTTGGACTACACA+TGG - Chr3:70227389-70227408 None:intergenic 35.0%
GTCATAACCAAATGCGAAAT+TGG + Chr3:70224711-70224730 MsG0380015439.01.T01:intron 35.0%
TAATATACGCATCTAACAGG+AGG + Chr3:70225983-70226002 MsG0380015439.01.T01:intron 35.0%
TAGGCATCAAGCAAAGTATA+GGG + Chr3:70227952-70227971 MsG0380015439.01.T01:intron 35.0%
TATTTGTAGGCGTTTCTTGA+AGG + Chr3:70230718-70230737 MsG0380015439.01.T01:intron 35.0%
TGATTGAGAAAGAATGAGGT+TGG - Chr3:70230146-70230165 None:intergenic 35.0%
TGCTTATGGATCAAAGAATG+AGG + Chr3:70227077-70227096 MsG0380015439.01.T01:CDS 35.0%
TTAATGGAAGGAAGCCTTAA+TGG - Chr3:70227335-70227354 None:intergenic 35.0%
TTAGGCATCAAGCAAAGTAT+AGG + Chr3:70227951-70227970 MsG0380015439.01.T01:intron 35.0%
! GAATTTACACAGGTTGAGTT+TGG + Chr3:70227363-70227382 MsG0380015439.01.T01:intron 35.0%
! GATAGAACTCAAGTTGCTTA+TGG + Chr3:70227063-70227082 MsG0380015439.01.T01:CDS 35.0%
! TGAATATGTGGCTTTTATGC+AGG + Chr3:70225188-70225207 MsG0380015439.01.T01:intron 35.0%
!! GATAAGTTGATTGGAGTAAC+AGG + Chr3:70226094-70226113 MsG0380015439.01.T01:CDS 35.0%
!!! TTTTAGAACTGGCAATAGCA+AGG - Chr3:70229208-70229227 None:intergenic 35.0%
AAAGTGAAGACAGCTTCTTG+TGG + Chr3:70224993-70225012 MsG0380015439.01.T01:CDS 40.0%
AACATGCAAGTACGACAAGA+TGG + Chr3:70227656-70227675 MsG0380015439.01.T01:intron 40.0%
AACCTAATCAGTCCCTTATC+CGG - Chr3:70224933-70224952 None:intergenic 40.0%
AAGGATGTGTGAGTTATGAG+TGG + Chr3:70228747-70228766 MsG0380015439.01.T01:intron 40.0%
AAGGCCTGTGCATAGAAATT+TGG - Chr3:70225800-70225819 None:intergenic 40.0%
AATGTGGCTCTCAAATTTCC+AGG - Chr3:70226525-70226544 None:intergenic 40.0%
ACTATGCTTGAACCATCAAG+AGG - Chr3:70226028-70226047 None:intergenic 40.0%
ACTCCAATCAACTTATCACC+AGG - Chr3:70226091-70226110 None:intergenic 40.0%
AGAAAGAATGAGGTTGGGTT+GGG - Chr3:70230140-70230159 None:intergenic 40.0%
ATGGCTAGATGCTTAGATGT+TGG - Chr3:70227316-70227335 None:intergenic 40.0%
ATGTGGCTCTCAAATTTCCA+GGG - Chr3:70226524-70226543 None:intergenic 40.0%
CAATTGAATAGAGTGAGGTG+AGG - Chr3:70230115-70230134 None:intergenic 40.0%
CCATAAATCTGTGCTAGACA+AGG + Chr3:70227023-70227042 MsG0380015439.01.T01:CDS 40.0%
CCTTGTCTAGCACAGATTTA+TGG - Chr3:70227026-70227045 None:intergenic 40.0%
CTATGCTTGAACCATCAAGA+GGG - Chr3:70226027-70226046 None:intergenic 40.0%
CTCAAACAACAGTCTCAACT+TGG - Chr3:70226950-70226969 None:intergenic 40.0%
CTCTTGATTGAAAATGCTGG+AGG + Chr3:70226985-70227004 MsG0380015439.01.T01:CDS 40.0%
CTTCGGGATAACACACTTAA+AGG + Chr3:70225297-70225316 MsG0380015439.01.T01:intron 40.0%
GAAACTCATGAAATCGGAGA+AGG + Chr3:70226486-70226505 MsG0380015439.01.T01:CDS 40.0%
GACTCATATGCGTGGTTATT+TGG + Chr3:70230944-70230963 MsG0380015439.01.T01:CDS 40.0%
GCAAGTACATAAGTGGTTCT+AGG - Chr3:70226157-70226176 None:intergenic 40.0%
GGACTCTTGATTGAAAATGC+TGG + Chr3:70226982-70227001 MsG0380015439.01.T01:CDS 40.0%
GGGATCAATTGAATAGAGTG+AGG - Chr3:70230120-70230139 None:intergenic 40.0%
GTCACCAAATTTCTATGCAC+AGG + Chr3:70225793-70225812 MsG0380015439.01.T01:intron 40.0%
TATGGTTCATCAAGGCTCAA+GGG + Chr3:70227123-70227142 MsG0380015439.01.T01:intron 40.0%
TCAGGACAAAGTTTGAACCT+TGG - Chr3:70228553-70228572 None:intergenic 40.0%
TCTTGTCGTCTTCAATCACT+TGG - Chr3:70230973-70230992 None:intergenic 40.0%
TGCGATATGGTGATAAAGAG+AGG - Chr3:70230173-70230192 None:intergenic 40.0%
TGGATCCAATGTCTAGGAAT+TGG - Chr3:70225163-70225182 None:intergenic 40.0%
TGGTGAGTTACTTACATGTG+TGG + Chr3:70224742-70224761 MsG0380015439.01.T01:intron 40.0%
TTCGTTCTTCATCCCTTAGT+TGG + Chr3:70226643-70226662 MsG0380015439.01.T01:intron 40.0%
TTCTTGAAGGGACTTCTACA+CGG + Chr3:70230731-70230750 MsG0380015439.01.T01:CDS 40.0%
TTGGTCCAATTCCTAGACAT+TGG + Chr3:70225155-70225174 MsG0380015439.01.T01:intron 40.0%
! CAAGTTGAGACTGTTGTTTG+AGG + Chr3:70226948-70226967 MsG0380015439.01.T01:CDS 40.0%
! GGCTAACAATCTTCTTTTCG+AGG + Chr3:70225070-70225089 MsG0380015439.01.T01:CDS 40.0%
! GTAAAAATTCATGAGTGCCG+GGG - Chr3:70226192-70226211 None:intergenic 40.0%
! TGACAATGCCGATTATGCTA+AGG + Chr3:70226545-70226564 MsG0380015439.01.T01:CDS 40.0%
! TTGTTTGAGGTAGCTCCATT+AGG + Chr3:70226961-70226980 MsG0380015439.01.T01:CDS 40.0%
!! ATTAGGTTGATGGTGTGCAT+GGG + Chr3:70224945-70224964 MsG0380015439.01.T01:CDS 40.0%
!! GATTGATGATGTGTGCGATA+TGG - Chr3:70230186-70230205 None:intergenic 40.0%
!! TAAGGGACTGATTAGGTTGA+TGG + Chr3:70224935-70224954 MsG0380015439.01.T01:CDS 40.0%
!! TTTTTGGTCAAGTAGCCTAG+TGG - Chr3:70225728-70225747 None:intergenic 40.0%
AATCCCTGAGCTTCAAGACA+TGG + Chr3:70225859-70225878 MsG0380015439.01.T01:CDS 45.0%
ACTGTCGCCAATTTCGCATT+TGG - Chr3:70224721-70224740 None:intergenic 45.0%
AGGCGTGGAAAAGTTCTTGT+AGG - Chr3:70225269-70225288 None:intergenic 45.0%
ATCCCTGAGCTTCAAGACAT+GGG + Chr3:70225860-70225879 MsG0380015439.01.T01:CDS 45.0%
ATGAGCTTAGCTCAGTTGGT+AGG + Chr3:70225611-70225630 MsG0380015439.01.T01:intron 45.0%
ATGCGAAATTGGCGACAGTT+TGG + Chr3:70224722-70224741 MsG0380015439.01.T01:intron 45.0%
ATTCTTGTCAAAGGCGACAC+CGG + Chr3:70224911-70224930 MsG0380015439.01.T01:CDS 45.0%
ATTGAGATACACCGGAGGAA+TGG + Chr3:70226694-70226713 MsG0380015439.01.T01:CDS 45.0%
CAACAGTCTCAACTTGGCTT+TGG - Chr3:70226944-70226963 None:intergenic 45.0%
GAAGGAAAACTATTCTCCCC+TGG + Chr3:70226504-70226523 MsG0380015439.01.T01:CDS 45.0%
GAAGTGATGACTCATATGCG+TGG + Chr3:70230936-70230955 MsG0380015439.01.T01:CDS 45.0%
GAGAAAGAATGAGGTTGGGT+TGG - Chr3:70230141-70230160 None:intergenic 45.0%
GTATGGTTCATCAAGGCTCA+AGG + Chr3:70227122-70227141 MsG0380015439.01.T01:intron 45.0%
GTTGCATTTGACCCTCTTGA+TGG + Chr3:70226013-70226032 MsG0380015439.01.T01:CDS 45.0%
TACACATTGAGATACACCGG+AGG + Chr3:70226689-70226708 MsG0380015439.01.T01:CDS 45.0%
TACCAACTGAGCTAAGCTCA+TGG - Chr3:70225612-70225631 None:intergenic 45.0%
TCAGCACAACATCGATGAAG+TGG + Chr3:70230420-70230439 MsG0380015439.01.T01:CDS 45.0%
TCGCCACTCAGCATTAACAA+TGG + Chr3:70230204-70230223 MsG0380015439.01.T01:intron 45.0%
TGTGGCTCTCAAATTTCCAG+GGG - Chr3:70226523-70226542 None:intergenic 45.0%
TTCACAGTAGGCACCATCTT+TGG + Chr3:70226058-70226077 MsG0380015439.01.T01:CDS 45.0%
TTTCCTAAGCAGAAGGTCGT+AGG - Chr3:70229349-70229368 None:intergenic 45.0%
! AGATCAAGTTGCTGCAGCTA+TGG + Chr3:70226120-70226139 MsG0380015439.01.T01:CDS 45.0%
! GATCAAGTTGCTGCAGCTAT+GGG + Chr3:70226121-70226140 MsG0380015439.01.T01:CDS 45.0%
! GTTATCCCGAAGTCGATTCT+AGG - Chr3:70225289-70225308 None:intergenic 45.0%
! TAGGCACCATCTTTGGTGTA+TGG + Chr3:70226065-70226084 MsG0380015439.01.T01:CDS 45.0%
! TGAGCTTAGCTCAGTTGGTA+GGG + Chr3:70225612-70225631 MsG0380015439.01.T01:intron 45.0%
! TGCATTTTATATCCAGGGGC+CGG + Chr3:70225639-70225658 MsG0380015439.01.T01:intron 45.0%
!! GATTAGGTTGATGGTGTGCA+TGG + Chr3:70224944-70224963 MsG0380015439.01.T01:CDS 45.0%
!! GCAGAAGTGAGAGTGTTTCA+AGG - Chr3:70225819-70225838 None:intergenic 45.0%
!! TCGACGAGCGTTTCACTTTT+TGG + Chr3:70230463-70230482 MsG0380015439.01.T01:CDS 45.0%
!! TGGCCTGGTGATAAGTTGAT+TGG + Chr3:70226085-70226104 MsG0380015439.01.T01:CDS 45.0%
!! TTGAGCATGGCTTGCTACTT+GGG - Chr3:70230813-70230832 None:intergenic 45.0%
!! TTTGAGCATGGCTTGCTACT+TGG - Chr3:70230814-70230833 None:intergenic 45.0%
!!! AAAAAAAAAAATTGTATTTT+AGG + Chr3:70229292-70229311 MsG0380015439.01.T01:intron 5.0%
!!! TTAATATAATCTTTTTTTTA+AGG + Chr3:70229714-70229733 MsG0380015439.01.T01:intron 5.0%
ACCAGGCCATACACCAAAGA+TGG - Chr3:70226074-70226093 None:intergenic 50.0%
CACCGGATAAGGGACTGATT+AGG + Chr3:70224928-70224947 MsG0380015439.01.T01:CDS 50.0%
CTCCATGAGCTTAGCTCAGT+TGG + Chr3:70225607-70225626 MsG0380015439.01.T01:intron 50.0%
CTCCCATGTCTTGAAGCTCA+GGG - Chr3:70225865-70225884 None:intergenic 50.0%
CTTGCACTTAAGGACTTCCC+CGG + Chr3:70226172-70226191 MsG0380015439.01.T01:CDS 50.0%
GAACCTACGACCTTCTGCTT+AGG + Chr3:70229343-70229362 MsG0380015439.01.T01:intron 50.0%
GCAACTTGCAGTGGATATGC+TGG + Chr3:70225049-70225068 MsG0380015439.01.T01:CDS 50.0%
GCACAACATCGATGAAGTGG+TGG + Chr3:70230423-70230442 MsG0380015439.01.T01:CDS 50.0%
GCGCACACATGTGTTTGACA+TGG + Chr3:70230689-70230708 MsG0380015439.01.T01:intron 50.0%
GCGTCTGTTTCCTAAGCAGA+AGG - Chr3:70229356-70229375 None:intergenic 50.0%
GCTTAAGCACTTGCTCCAAC+AGG - Chr3:70227156-70227175 None:intergenic 50.0%
GGACTTCTACACGGCAAAGA+CGG + Chr3:70230740-70230759 MsG0380015439.01.T01:CDS 50.0%
GTGAAGACAGCTTCTTGTGG+TGG + Chr3:70224996-70225015 MsG0380015439.01.T01:CDS 50.0%
TACACGGCAAAGACGGAAAG+TGG + Chr3:70230747-70230766 MsG0380015439.01.T01:CDS 50.0%
TCAAAGGCGACACCGGATAA+GGG + Chr3:70224918-70224937 MsG0380015439.01.T01:CDS 50.0%
TGTGGAGAAGTGGAGAGAAG+TGG - Chr3:70225684-70225703 None:intergenic 50.0%
! AATGGTGCCGGATGTTAACC+AGG + Chr3:70226712-70226731 MsG0380015439.01.T01:CDS 50.0%
! ACCATCTTTGGTGTATGGCC+TGG + Chr3:70226070-70226089 MsG0380015439.01.T01:CDS 50.0%
! CATTTTATATCCAGGGGCCG+GGG + Chr3:70225641-70225660 MsG0380015439.01.T01:intron 50.0%
! GCATTTTATATCCAGGGGCC+GGG + Chr3:70225640-70225659 MsG0380015439.01.T01:intron 50.0%
! GCTGCAGCTATGGGAGTTTT+AGG + Chr3:70226130-70226149 MsG0380015439.01.T01:CDS 50.0%
! TCCACGCCTAGAATCGACTT+CGG + Chr3:70225280-70225299 MsG0380015439.01.T01:intron 50.0%
! TTGTGTGAGCTCTAGCCACT+AGG + Chr3:70225710-70225729 MsG0380015439.01.T01:intron 50.0%
!! CTCAACTTGGCTTTGGCAGT+TGG - Chr3:70226937-70226956 None:intergenic 50.0%
AACATCCGGCACCATTCCTC+CGG - Chr3:70226708-70226727 None:intergenic 55.0%
AGGATGCCAAAAAACGCGCC+AGG + Chr3:70229312-70229331 MsG0380015439.01.T01:intron 55.0%
ATACACCGGAGGAATGGTGC+CGG + Chr3:70226700-70226719 MsG0380015439.01.T01:CDS 55.0%
CCAAAAAACGCGCCAGGTAG+GGG + Chr3:70229318-70229337 MsG0380015439.01.T01:intron 55.0%
CCTCCCATGTCTTGAAGCTC+AGG - Chr3:70225866-70225885 None:intergenic 55.0%
CCTGAGCTTCAAGACATGGG+AGG + Chr3:70225863-70225882 MsG0380015439.01.T01:CDS 55.0%
CGCTCTATCCACTGAGCTAC+AGG + Chr3:70229373-70229392 MsG0380015439.01.T01:intron 55.0%
CTCAAGGGTGGTGTACCTGT+TGG + Chr3:70227138-70227157 MsG0380015439.01.T01:intron 55.0%
GACATGGGAGGTCCAGTTGA+TGG + Chr3:70225875-70225894 MsG0380015439.01.T01:CDS 55.0%
GAGTGAGGTGAGGTGAAGTG+AGG - Chr3:70230105-70230124 None:intergenic 55.0%
GCCAAAAAACGCGCCAGGTA+GGG + Chr3:70229317-70229336 MsG0380015439.01.T01:intron 55.0%
GCTGGAGGTTACAGCAGTGA+TGG + Chr3:70227000-70227019 MsG0380015439.01.T01:CDS 55.0%
GGTTCATCAAGGCTCAAGGG+TGG + Chr3:70227126-70227145 MsG0380015439.01.T01:intron 55.0%
GTCAAAGGCGACACCGGATA+AGG + Chr3:70224917-70224936 MsG0380015439.01.T01:CDS 55.0%
TGCCAAAAAACGCGCCAGGT+AGG + Chr3:70229316-70229335 MsG0380015439.01.T01:intron 55.0%
TGGGGATGAGCAACTTGCAG+TGG + Chr3:70225040-70225059 MsG0380015439.01.T01:CDS 55.0%
! CCACGCCTAGAATCGACTTC+GGG + Chr3:70225281-70225300 MsG0380015439.01.T01:intron 55.0%
! GTGGAGAGAAGTGGAGTGTC+CGG - Chr3:70225675-70225694 None:intergenic 55.0%
! TGGAGAGAAGTGGAGTGTCC+GGG - Chr3:70225674-70225693 None:intergenic 55.0%
!! GCATGGCTTGCTACTTGGGA+TGG - Chr3:70230809-70230828 None:intergenic 55.0%
TCGTAGGTTCGACCCCTACC+TGG - Chr3:70229333-70229352 None:intergenic 60.0%
! CCCGAAGTCGATTCTAGGCG+TGG - Chr3:70225284-70225303 None:intergenic 60.0%
! GGAGAGAAGTGGAGTGTCCG+GGG - Chr3:70225673-70225692 None:intergenic 60.0%
!! AAGGAGCGCCTGTAGCTCAG+TGG - Chr3:70229384-70229403 None:intergenic 60.0%
!!! CCCCTACCTGGCGCGTTTTT+TGG - Chr3:70229321-70229340 None:intergenic 60.0%
AGTGTCCGGGGTTCGAACCC+CGG - Chr3:70225661-70225680 None:intergenic 65.0%
AGGGGCCGGGGTTCGAACCC+CGG + Chr3:70225653-70225672 MsG0380015439.01.T01:intron 75.0%
! GGGGTTCGAACCCCGGCCCC+TGG - Chr3:70225654-70225673 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
Chr3 gene 70224615 70231069 70224615 ID=MsG0380015439.01;Name=MsG0380015439.01
Chr3 mRNA 70224615 70231069 70224615 ID=MsG0380015439.01.T01;Parent=MsG0380015439.01;Name=MsG0380015439.01.T01;_AED=0.31;_eAED=0.31;_QI=0|0.62|0.55|1|1|1|9|0|542
Chr3 exon 70224615 70224695 70224615 ID=MsG0380015439.01.T01:exon:23602;Parent=MsG0380015439.01.T01
Chr3 exon 70224906 70225091 70224906 ID=MsG0380015439.01.T01:exon:23603;Parent=MsG0380015439.01.T01
Chr3 exon 70225815 70225896 70225815 ID=MsG0380015439.01.T01:exon:23604;Parent=MsG0380015439.01.T01
Chr3 exon 70226002 70226223 70226002 ID=MsG0380015439.01.T01:exon:23605;Parent=MsG0380015439.01.T01
Chr3 exon 70226466 70226566 70226466 ID=MsG0380015439.01.T01:exon:23606;Parent=MsG0380015439.01.T01
Chr3 exon 70226662 70226733 70226662 ID=MsG0380015439.01.T01:exon:23607;Parent=MsG0380015439.01.T01
Chr3 exon 70226892 70227106 70226892 ID=MsG0380015439.01.T01:exon:23608;Parent=MsG0380015439.01.T01
Chr3 exon 70230291 70230617 70230291 ID=MsG0380015439.01.T01:exon:23609;Parent=MsG0380015439.01.T01
Chr3 exon 70230727 70231069 70230727 ID=MsG0380015439.01.T01:exon:23610;Parent=MsG0380015439.01.T01
Chr3 CDS 70224615 70224695 70224615 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70224906 70225091 70224906 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70225815 70225896 70225815 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70226002 70226223 70226002 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70226466 70226566 70226466 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70226662 70226733 70226662 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70226892 70227106 70226892 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70230291 70230617 70230291 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Chr3 CDS 70230727 70231069 70230727 ID=MsG0380015439.01.T01:cds;Parent=MsG0380015439.01.T01
Gene Sequence

>MsG0380015439.01.T01

ATGAGGCAGAGTTTGAAATCAAGCTCTTTATTTGGAGAATCTCTTAGAGTGTCATCTAAATCAACACTTAAGTTTTCAAGGGAAGAATTCTTGTCAAAGGCGACACCGGATAAGGGACTGATTAGGTTGATGGTGTGCATGGGAGAAGCATTGAGAACAATTTCTTTCAAAGTGAAGACAGCTTCTTGTGGTGGAACACAATGTGTTAACTCTTTTGGGGATGAGCAACTTGCAGTGGATATGCTGGCTAACAATCTTCTTTTCGAGGCCTTGAAACACTCTCACTTCTGCAAGTACGCTTGCTCAGAAGAAATCCCTGAGCTTCAAGACATGGGAGGTCCAGTTGATGGAGGATTTAGTGTTGCATTTGACCCTCTTGATGGTTCAAGCATAGTAGACACAAATTTCACAGTAGGCACCATCTTTGGTGTATGGCCTGGTGATAAGTTGATTGGAGTAACAGGAAGAGATCAAGTTGCTGCAGCTATGGGAGTTTTAGGTCCTAGAACCACTTATGTACTTGCACTTAAGGACTTCCCCGGCACTCATGAATTTTTACTTCTTGATGAAGGAAAATGGCAGCATGTCAAAGAAACTCATGAAATCGGAGAAGGAAAACTATTCTCCCCTGGAAATTTGAGAGCCACATTTGACAATGCCGATTATGCTAAGTTGGTCGATTACTATGTTAGAGAAAAATACACATTGAGATACACCGGAGGAATGGTGCCGGATGTTAACCAGATTATTGTAAAAGAAAAGGGAATATTTACAAATGTGACATCACCAACTGCCAAAGCCAAGTTGAGACTGTTGTTTGAGGTAGCTCCATTAGGACTCTTGATTGAAAATGCTGGAGGTTACAGCAGTGATGGCCATAAATCTGTGCTAGACAAGGTCATTGAGAACATTGATGATAGAACTCAAGTTGCTTATGGATCAAAGAATGAGGTCATTAGCATCGAAGAAAGTAGTAGAATGGTAGAGAATATTCTAGGTTACAGTCTTCATAGCATGATGAATAATTTCCAAGAAGATGATTATTGGTTGATGAAGGAAACTATGCTATGTAGTGTTGATCAAATCAATCAGCACAACATCGATGAAGTGGTGGCAGAAAATAATATTGCATCGACGAGCGTTTCACTTTTTGGATATGATTCAGTTGATTCTTTCAACTTCTCTCCTCATGCAACCGATAATAATAACAATAGAACTACGAATATCGTGGAATCCAAAAAGAAATCATTCAAGAAAGTGGTTCATTGGTCACGTGATGAACACATGCGTTTCTTGAAGGGACTTCTACACGGCAAAGACGGAAAGTGGAAAGAAATCTCTAAGGACTATGTAAAAACAAAGACTCCATCCCAAGTAGCAAGCCATGCTCAAAAGTACGAAAAAAGGCAAAAGCAAAGACTTGATGATGATAGCAAAAATATCAAAAGGAAACTTAGGGGTAGCATCCATGATATAACTACTCTTGATCTTCTTGGAAGTGATGACTCATATGCGTGGTTATTTGGTGACCAAGTGATTGAAGACGACAAGAATAACAATGGATCACTCTCAGTCACAAATTTCAACCAAGAATGTGATAAAGATCATGAAGTTGTTGCTTCCACTTGA

Protein sequence

>MsG0380015439.01.T01

MRQSLKSSSLFGESLRVSSKSTLKFSREEFLSKATPDKGLIRLMVCMGEALRTISFKVKTASCGGTQCVNSFGDEQLAVDMLANNLLFEALKHSHFCKYACSEEIPELQDMGGPVDGGFSVAFDPLDGSSIVDTNFTVGTIFGVWPGDKLIGVTGRDQVAAAMGVLGPRTTYVLALKDFPGTHEFLLLDEGKWQHVKETHEIGEGKLFSPGNLRATFDNADYAKLVDYYVREKYTLRYTGGMVPDVNQIIVKEKGIFTNVTSPTAKAKLRLLFEVAPLGLLIENAGGYSSDGHKSVLDKVIENIDDRTQVAYGSKNEVISIEESSRMVENILGYSLHSMMNNFQEDDYWLMKETMLCSVDQINQHNIDEVVAENNIASTSVSLFGYDSVDSFNFSPHATDNNNNRTTNIVESKKKSFKKVVHWSRDEHMRFLKGLLHGKDGKWKEISKDYVKTKTPSQVASHAQKYEKRQKQRLDDDSKNIKRKLRGSIHDITTLDLLGSDDSYAWLFGDQVIEDDKNNNGSLSVTNFNQECDKDHEVVAST*