AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0280009579.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009579.01.T01 MTR_2g067230 95.618 251 11 0 1 251 1 251 1.55e-178 494
MsG0280009579.01.T01 MTR_0320s0040 86.066 122 17 0 36 157 15 136 4.42e-72 220
MsG0280009579.01.T01 MTR_2g049780 34.066 182 115 2 69 245 69 250 1.24e-34 126
MsG0280009579.01.T01 MTR_5g041630 32.308 195 123 3 63 250 51 243 2.45e-29 112
MsG0280009579.01.T01 MTR_7g081270 28.986 207 131 7 51 246 25 226 7.03e-18 81.3
MsG0280009579.01.T01 MTR_5g094610 24.211 190 130 5 70 246 227 415 8.76e-15 73.9
MsG0280009579.01.T01 MTR_6g003960 26.455 189 119 5 65 246 392 567 1.10e-14 73.6
MsG0280009579.01.T01 MTR_6g003960 25.301 166 117 2 87 246 370 534 5.41e-12 65.5
MsG0280009579.01.T01 MTR_2g034600 26.506 166 111 4 87 245 333 494 2.20e-12 66.6
MsG0280009579.01.T01 MTR_2g034600 26.506 166 111 4 87 245 329 490 2.26e-12 66.6
MsG0280009579.01.T01 MTR_2g034600 26.506 166 111 4 87 245 268 429 2.39e-12 66.6
MsG0280009579.01.T01 MTR_4g070060 22.959 196 142 3 65 251 270 465 3.61e-12 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0280009579.01.T01 AT2G36000 53.226 186 83 3 70 251 74 259 5.84e-65 206
MsG0280009579.01.T01 AT2G36000 53.763 186 82 3 70 251 74 259 6.70e-65 205
MsG0280009579.01.T01 AT2G34620 37.363 182 109 2 69 245 55 236 1.92e-38 136
MsG0280009579.01.T01 AT2G03050 35.122 205 120 6 50 245 15 215 3.40e-32 119
MsG0280009579.01.T01 AT2G03050 35.122 205 120 6 50 245 14 214 3.47e-32 119
MsG0280009579.01.T01 AT3G18870 28.796 191 122 5 66 248 33 217 5.95e-21 89.4
MsG0280009579.01.T01 AT5G55580 23.810 189 132 5 70 246 220 408 1.57e-15 75.9
MsG0280009579.01.T01 AT5G55580 23.810 189 132 5 70 246 114 302 1.75e-15 75.5
MsG0280009579.01.T01 AT4G14605 24.444 180 118 7 75 244 274 445 3.20e-13 69.3
MsG0280009579.01.T01 AT4G14605 23.529 187 135 4 66 245 229 414 4.84e-12 65.9
MsG0280009579.01.T01 AT4G14605 24.444 180 118 7 75 244 274 445 3.20e-13 69.3
MsG0280009579.01.T01 AT4G14605 23.529 187 135 4 66 245 229 414 4.84e-12 65.9
MsG0280009579.01.T01 AT1G78930 22.892 166 121 2 87 246 357 521 7.69e-11 62.4

Find 92 sgRNAs with CRISPR-Local

Find 198 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAATACTTTGAAAATAT+TGG 0.171383 2:+54570160 MsG0280009579.01.T01:CDS
TTATAGTATTAAGAATAATT+TGG 0.227622 2:+54570237 MsG0280009579.01.T01:CDS
TCTGCAAACCCTTTCATTCT+AGG 0.246141 2:+54568055 MsG0280009579.01.T01:CDS
CACCACAAGTAATTGTATTT+AGG 0.272400 2:-54570262 None:intergenic
CAGAGACGAGTGAAGGATTT+GGG 0.284020 2:-54568036 MsG0280009578.01.T01:CDS
TGCAATTGAGTTTCGGCGTT+TGG 0.299697 2:+54569883 MsG0280009579.01.T01:CDS
ACAATTACTTGTGGTGGAAA+TGG 0.315748 2:+54570269 MsG0280009579.01.T01:CDS
AGCAGTAGCAGAACACATTT+TGG 0.318166 2:-54567980 MsG0280009578.01.T01:intron
GCAGAGACGAGTGAAGGATT+TGG 0.326298 2:-54568037 MsG0280009578.01.T01:CDS
GAGATGGTGGGAGTGTGTTC+TGG 0.336402 2:-54567868 MsG0280009578.01.T01:intron
ACATAAACGGTGTGTAGAAA+TGG 0.346811 2:+54570365 MsG0280009579.01.T01:three_prime_UTR
ATGTATTACAGGTTGTAAAA+TGG 0.349290 2:+54569681 MsG0280009579.01.T01:intron
ATAGAAGAATGAAGAAGAAA+TGG 0.358041 2:-54567947 MsG0280009578.01.T01:intron
TCTCATTTAGCTTAGAGAAT+AGG 0.372077 2:+54570331 MsG0280009579.01.T01:three_prime_UTR
CAATTACTTGTGGTGGAAAT+GGG 0.376296 2:+54570270 MsG0280009579.01.T01:CDS
TTGGGAGGTAGAGTTTGATT+TGG 0.383136 2:-54569710 None:intergenic
CTACCTCCCAACAGTGATAC+TGG 0.387680 2:+54569722 MsG0280009579.01.T01:CDS
ATTTCTCTGCAATTGAGTTT+CGG 0.390370 2:+54569876 MsG0280009579.01.T01:CDS
CGACACTACATGATAGCAAA+TGG 0.394976 2:-54570117 None:intergenic
CTGCAAACCCTTTCATTCTA+GGG 0.396577 2:+54568056 MsG0280009579.01.T01:CDS
AGGTATAATGTCTGAGACTT+TGG 0.410020 2:-54569933 None:intergenic
CCTCTTCTATGCCAATACTT+TGG 0.410530 2:-54570081 None:intergenic
CCTTGAAAACATCTCCTTTG+TGG 0.416787 2:+54570475 MsG0280009579.01.T01:three_prime_UTR
ACTTTGGTGGTAAGAATCTC+CGG 0.437649 2:-54569917 None:intergenic
GCATGCGTGGCATTTCTTGT+AGG 0.444046 2:-54567803 MsG0280009578.01.T01:intron
GCGTTTGGTTGGCATGTGCC+CGG 0.446971 2:+54569898 MsG0280009579.01.T01:CDS
TCCACAGTGGAATACATTAC+CGG 0.452556 2:+54569848 MsG0280009579.01.T01:CDS
TCGTGAAGAATGGAAGGAAA+TGG 0.456886 2:-54568088 None:intergenic
CACCGAGAAGTTCGTGTAAG+TGG 0.461340 2:+54569971 MsG0280009579.01.T01:CDS
GTGTGTTCTGGAACGGAGAT+TGG 0.462780 2:-54567856 MsG0280009578.01.T01:intron
GAAGAAGAAATGGTTATGAA+TGG 0.466694 2:-54567937 MsG0280009578.01.T01:intron
AGCCACTTACACGAACTTCT+CGG 0.475846 2:-54569973 None:intergenic
TGGAAACCAGTATCACTGTT+GGG 0.483002 2:-54569728 None:intergenic
ACATCTCCTTTGTGGTGTGC+TGG 0.485125 2:+54570483 MsG0280009579.01.T01:three_prime_UTR
CATAAACGGTGTGTAGAAAT+GGG 0.489419 2:+54570366 MsG0280009579.01.T01:three_prime_UTR
AGAAGGTAGGTCGTGAAGAA+TGG 0.495056 2:-54568098 None:intergenic
CTTCTATGCCAATACTTTGG+AGG 0.495955 2:-54570078 None:intergenic
TATTGAAAATCATCCGAAGC+TGG 0.499544 2:+54569799 MsG0280009579.01.T01:CDS
ATTGAGTTTCGGCGTTTGGT+TGG 0.499938 2:+54569887 MsG0280009579.01.T01:CDS
GGATTAAGCCTCGACATAAA+CGG 0.510017 2:+54570352 MsG0280009579.01.T01:three_prime_UTR
AAAACAGCTGAGGAAATCTT+CGG 0.515087 2:-54570213 None:intergenic
CTTTGGAGGAAGTACATAGT+AGG 0.519338 2:-54570064 None:intergenic
ATGTAATAAATCGTCGTCCT+CGG 0.520791 2:+54570008 MsG0280009579.01.T01:CDS
AGTGACGCAGTAACCAGCTT+CGG 0.520879 2:-54569812 None:intergenic
GGAAATGGGGAGAGATTTGA+AGG 0.522542 2:+54570284 MsG0280009579.01.T01:CDS
GGGTAATAGTGTTGAGATGG+TGG 0.527299 2:-54567881 MsG0280009578.01.T01:intron
AGTAGGAACCCTAGAATGAA+AGG 0.529503 2:-54568064 MsG0280009578.01.T01:CDS
TACCTTCTTTGTCAGAGCTA+CGG 0.531441 2:+54568113 MsG0280009579.01.T01:CDS
CGGTGAAGGAACGTGAAGAC+AGG 0.535591 2:-54569953 None:intergenic
TTGGAAACCAGTATCACTGT+TGG 0.536691 2:-54569729 None:intergenic
GTCTTTAATAACAAAGGAAG+AGG 0.541502 2:-54570399 None:intergenic
GATTGGAGAAGTGATGGATG+AGG 0.542930 2:-54567839 MsG0280009578.01.T01:intron
GAATGGAAGGAAATGGAAGT+AGG 0.544386 2:-54568081 MsG0280009578.01.T01:CDS
GGTAGGTCGTGAAGAATGGA+AGG 0.551426 2:-54568094 None:intergenic
GACACTACATGATAGCAAAT+GGG 0.553619 2:-54570116 None:intergenic
ATGTACTTCCTCCAAAGTAT+TGG 0.554399 2:+54570070 MsG0280009579.01.T01:CDS
AATTGCAGAGAAATCCATTC+CGG 0.562172 2:-54569867 None:intergenic
CTAAATACAATTACTTGTGG+TGG 0.562556 2:+54570263 MsG0280009579.01.T01:CDS
TTTGGGAATGTGGTGATCGG+TGG 0.563121 2:-54568019 MsG0280009578.01.T01:CDS
TATAATGTCTGAGACTTTGG+TGG 0.565471 2:-54569930 None:intergenic
AAGCTAAATGAGAAATAATG+AGG 0.567357 2:-54570321 None:intergenic
TCACTAGTCTTTAATAACAA+AGG 0.568382 2:-54570405 None:intergenic
GGATTTGGGAATGTGGTGAT+CGG 0.571770 2:-54568022 MsG0280009578.01.T01:CDS
GTAGGAACCCTAGAATGAAA+GGG 0.583590 2:-54568063 MsG0280009578.01.T01:CDS
CTTTGGTGGTAAGAATCTCC+GGG 0.592939 2:-54569916 None:intergenic
GGGTTTGCAGAGACGAGTGA+AGG 0.596048 2:-54568043 MsG0280009578.01.T01:CDS
AACGGAGATTGGAGAAGTGA+TGG 0.597106 2:-54567845 MsG0280009578.01.T01:intron
GTGGTGATCGGTGGAAAACA+AGG 0.598610 2:-54568010 MsG0280009578.01.T01:CDS
TCTATACTTGATCAATATCA+CGG 0.599535 2:-54570506 None:intergenic
AACCGTAGCTCTGACAAAGA+AGG 0.600770 2:-54568115 None:intergenic
CCAAAGTATTGGCATAGAAG+AGG 0.600971 2:+54570081 MsG0280009579.01.T01:CDS
AGCCTAAATACAATTACTTG+TGG 0.602961 2:+54570260 MsG0280009579.01.T01:CDS
TTACACGAACTTCTCGGTGA+AGG 0.604014 2:-54569967 None:intergenic
AGTGGAATACATTACCGGAA+TGG 0.608509 2:+54569853 MsG0280009579.01.T01:CDS
TCTACACACCGTTTATGTCG+AGG 0.610087 2:-54570360 None:intergenic
AATTACTTGTGGTGGAAATG+GGG 0.620451 2:+54570271 MsG0280009579.01.T01:CDS
AATGGGTAATAGTGTTGAGA+TGG 0.626913 2:-54567884 MsG0280009578.01.T01:intron
ATACTATAACAAAACAGCTG+AGG 0.633616 2:-54570223 None:intergenic
AATGGGGAGAGATTTGAAGG+AGG 0.634987 2:+54570287 MsG0280009579.01.T01:exon
GTCTTGTATCTAGAATCTAT+CGG 0.638166 2:+54569758 MsG0280009579.01.T01:CDS
GAGTGAAGGATTTGGGAATG+TGG 0.645827 2:-54568029 MsG0280009578.01.T01:CDS
AGATAGAGAGAATGCATGCG+TGG 0.660355 2:-54567816 MsG0280009578.01.T01:intron
GGTGGGAGTGTGTTCTGGAA+CGG 0.663260 2:-54567863 MsG0280009578.01.T01:intron
GGTAATAGTGTTGAGATGGT+GGG 0.668740 2:-54567880 MsG0280009578.01.T01:intron
TCACGGCCAGCACACCACAA+AGG 0.684243 2:-54570489 None:intergenic
GTAGCTCTGACAAAGAAGGT+AGG 0.686492 2:-54568111 None:intergenic
GGAACATCGATGTAGTGTCA+CGG 0.693137 2:-54570192 None:intergenic
TCCGGTAATGTATTCCACTG+TGG 0.695997 2:-54569849 None:intergenic
ACATTGCAAATGATCAACCG+AGG 0.728440 2:-54570025 None:intergenic
AAACCAGTATCACTGTTGGG+AGG 0.748317 2:-54569725 None:intergenic
TGGTGATCGGTGGAAAACAA+GGG 0.748516 2:-54568009 MsG0280009578.01.T01:intron
TGACGATATAAAATCCACAG+TGG 0.749902 2:+54569835 MsG0280009579.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GAAATTAAAATTGAAAAAAA+TGG - Chr2:54567905-54567924 MsG0280009578.01.T01:intron 10.0%
!! TTATAGTATTAAGAATAATT+TGG + Chr2:54570237-54570256 MsG0280009579.01.T01:CDS 10.0%
!!! ATAATTTAGTTTTTATTACT+GGG + Chr2:54568300-54568319 MsG0280009579.01.T01:intron 10.0%
!! AACTATTAAAATCAACTAAA+AGG - Chr2:54568820-54568801 None:intergenic 15.0%
!! TTATTCAATTCAATTAGTAA+AGG - Chr2:54568731-54568750 None:intergenic 15.0%
!!! AAGAATTTAGTTATGTTTTT+GGG + Chr2:54568485-54568504 MsG0280009579.01.T01:intron 15.0%
!!! AAGTTTTCATTTTTATTACT+GGG + Chr2:54568214-54568233 MsG0280009579.01.T01:intron 15.0%
!!! ATTGAATACTTTGAAAATAT+TGG + Chr2:54570160-54570179 MsG0280009579.01.T01:CDS 15.0%
!!! ATTTTGCTTATATTTTGAAA+CGG - Chr2:54569131-54569150 None:intergenic 15.0%
!!! ATTTTGCTTATTTTTTGAAA+CGG + Chr2:54569238-54569257 MsG0280009579.01.T01:intron 15.0%
!!! GATAATTTAGTTTTTATTAC+TGG + Chr2:54568299-54568318 MsG0280009579.01.T01:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG + Chr2:54568884-54568903 MsG0280009579.01.T01:intron 15.0%
!!! TAGTTGATTTTAATAGTTTA+GGG - Chr2:54568903-54568884 None:intergenic 15.0%
!!! TATTTTCAAAGTATTCAATT+CGG - Chr2:54570159-54570178 None:intergenic 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG + Chr2:54568883-54568902 MsG0280009579.01.T01:intron 15.0%
!!! TTAGTTGATTTTAATAGTTT+AGG - Chr2:54568902-54568883 None:intergenic 15.0%
!!! TTTTCTTTTTATTTTGCTTT+GGG + Chr2:54568565-54568584 MsG0280009579.01.T01:intron 15.0%
!!! TTTTTCTTTTTATTTTGCTT+TGG + Chr2:54568564-54568583 MsG0280009579.01.T01:intron 15.0%
!! TTAATTTCATGCTTTAGTAA+AGG + Chr2:54569582-54569601 MsG0280009579.01.T01:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG + Chr2:54569140-54569159 MsG0280009579.01.T01:intron 20.0%
!!! ATAAGCAAAATTCACTTTTT+AGG - Chr2:54569159-54569140 None:intergenic 20.0%
!!! ATTTTATTAACGGATGTAAA+TGG + Chr2:54568974-54568993 MsG0280009579.01.T01:intron 20.0%
!!! ATTTTCAAAGTATTCAATTC+GGG - Chr2:54570158-54570177 None:intergenic 20.0%
!!! CAAGAATTTAGTTATGTTTT+TGG + Chr2:54568484-54568503 MsG0280009579.01.T01:intron 20.0%
!!! CAAGTTTTCATTTTTATTAC+TGG + Chr2:54568213-54568232 MsG0280009579.01.T01:intron 20.0%
!!! TACTTTAGATTTTTCTTGAT+TGG + Chr2:54568352-54568371 MsG0280009579.01.T01:intron 20.0%
!!! TTTCTTTTTATTTTGCTTTG+GGG + Chr2:54568566-54568585 MsG0280009579.01.T01:intron 20.0%
!!! TTTGGTTAGGATTTTATTAA+CGG + Chr2:54568964-54568983 MsG0280009579.01.T01:intron 20.0%
! AAGCTAAATGAGAAATAATG+AGG - Chr2:54570324-54570343 None:intergenic 25.0%
! ACATTATATTACAGTGTGTT+TGG + Chr2:54568946-54568965 MsG0280009579.01.T01:intron 25.0%
! ACCAAATTGACAAATAGTTT+AGG + Chr2:54568907-54568926 MsG0280009579.01.T01:intron 25.0%
! ATAGAAGAATGAAGAAGAAA+TGG - Chr2:54567950-54567969 MsG0280009578.01.T01:intron 25.0%
! ATGTATTACAGGTTGTAAAA+TGG + Chr2:54569681-54569700 MsG0280009579.01.T01:intron 25.0%
! ATTAAGCACTTAAAAACCAA+AGG - Chr2:54568670-54568689 None:intergenic 25.0%
! CAACAGAATTCAACAATAAA+CGG - Chr2:54568516-54568535 None:intergenic 25.0%
! CAGTAAAGTTTATCATGTAA+CGG - Chr2:54569513-54569532 None:intergenic 25.0%
! CATTCATTTAATGATGTATG+TGG + Chr2:54569165-54569184 MsG0280009579.01.T01:intron 25.0%
! CATTCATTTAATGATGTATG+TGG - Chr2:54569184-54569165 None:intergenic 25.0%
! CCAAATTGACAAATAGTTTA+GGG + Chr2:54568908-54568927 MsG0280009579.01.T01:intron 25.0%
! GAAATTAATGTGCATTTAAC+AGG - Chr2:54569570-54569589 None:intergenic 25.0%
! GCTTAATAATGCTAAAGTTT+AGG + Chr2:54568158-54568177 MsG0280009579.01.T01:intron 25.0%
! TAATAGTTTAGGGACTAAAT+TGG - Chr2:54568789-54568808 None:intergenic 25.0%
! TCTATACTTGATCAATATCA+CGG - Chr2:54570509-54570528 None:intergenic 25.0%
! TGTCAATAACATACTTTCTT+TGG + Chr2:54569533-54569552 MsG0280009579.01.T01:intron 25.0%
! TTAAGCACTTAAAAACCAAA+GGG - Chr2:54568669-54568688 None:intergenic 25.0%
!!! AAAGTTTAGGTTTTTCTTAC+TGG + Chr2:54568171-54568190 MsG0280009579.01.T01:intron 25.0%
!!! AAGTTTAGGTTTTTCTTACT+GGG + Chr2:54568172-54568191 MsG0280009579.01.T01:intron 25.0%
!!! CTATTATTCTAAGACATTGT+TGG + Chr2:54568451-54568470 MsG0280009579.01.T01:intron 25.0%
!!! TCACTAGTCTTTAATAACAA+AGG - Chr2:54570408-54570427 None:intergenic 25.0%
!!! TTTTCAAAGTATTCAATTCG+GGG - Chr2:54570157-54570176 None:intergenic 25.0%
AAAAACCTTAATCCTTCAAG+AGG - Chr2:54568548-54568567 None:intergenic 30.0%
ACATAACTAAATTCTTGCCA+AGG - Chr2:54568481-54568500 None:intergenic 30.0%
AGCATTATTAAGCAGAATTG+AGG - Chr2:54568151-54568170 None:intergenic 30.0%
AGCCTAAATACAATTACTTG+TGG + Chr2:54570260-54570279 MsG0280009579.01.T01:CDS 30.0%
ATACTATAACAAAACAGCTG+AGG - Chr2:54570226-54570245 None:intergenic 30.0%
ATATTACAGTGTGTTTGGTT+AGG + Chr2:54568951-54568970 MsG0280009579.01.T01:intron 30.0%
ATCCATAAACTATACTCTCA+GGG + Chr2:54568823-54568842 MsG0280009579.01.T01:intron 30.0%
ATTAATGTGCATTTAACAGG+AGG - Chr2:54569567-54569586 None:intergenic 30.0%
ATTTCTCTGCAATTGAGTTT+CGG + Chr2:54569876-54569895 MsG0280009579.01.T01:CDS 30.0%
CACCACAAGTAATTGTATTT+AGG - Chr2:54570265-54570284 None:intergenic 30.0%
CCCTAAACTATTTGTCAATT+TGG - Chr2:54568911-54568930 None:intergenic 30.0%
CTAAATACAATTACTTGTGG+TGG + Chr2:54570263-54570282 MsG0280009579.01.T01:CDS 30.0%
GAAGAAGAAATGGTTATGAA+TGG - Chr2:54567940-54567959 MsG0280009578.01.T01:intron 30.0%
GATGTATGTGGTTCATAATA+TGG - Chr2:54569192-54569211 None:intergenic 30.0%
GGAGTAAAAAACTTGATCAA+TGG + Chr2:54569339-54569358 MsG0280009579.01.T01:intron 30.0%
GTCTTTAATAACAAAGGAAG+AGG - Chr2:54570402-54570421 None:intergenic 30.0%
TAATGAATGATGCTCTAGTT+TGG + Chr2:54568384-54568403 MsG0280009579.01.T01:intron 30.0%
TATACTCTCATCCATCAATT+TGG - Chr2:54568850-54568869 None:intergenic 30.0%
TATTTGCTTGCATGTTGAAT+TGG + Chr2:54569612-54569631 MsG0280009579.01.T01:intron 30.0%
! ATGGATGAGAGTATAGTTTA+AGG + Chr2:54568855-54568874 MsG0280009579.01.T01:intron 30.0%
! GTCTTGTATCTAGAATCTAT+CGG + Chr2:54569758-54569777 MsG0280009579.01.T01:CDS 30.0%
! TCTCATTTAGCTTAGAGAAT+AGG + Chr2:54570331-54570350 MsG0280009579.01.T01:three_prime_UTR 30.0%
!! TGATACTGGTTTCCAAAAAA+AGG + Chr2:54569736-54569755 MsG0280009579.01.T01:CDS 30.0%
!!! CTAGATACAAGACCTTTTTT+TGG - Chr2:54569751-54569770 None:intergenic 30.0%
!!! TGCTTATATTTTGAAACGGA+GGG - Chr2:54569127-54569146 None:intergenic 30.0%
!!! TGCTTATTTTTTGAAACGGA+GGG + Chr2:54569242-54569261 MsG0280009579.01.T01:intron 30.0%
!!! TTGCTTATATTTTGAAACGG+AGG - Chr2:54569128-54569147 None:intergenic 30.0%
!!! TTGCTTATTTTTTGAAACGG+AGG + Chr2:54569241-54569260 MsG0280009579.01.T01:intron 30.0%
AAAACAGCTGAGGAAATCTT+CGG - Chr2:54570216-54570235 None:intergenic 35.0%
AACAATAGTTGAGCAAAAGG+AGG - Chr2:54569004-54569023 None:intergenic 35.0%
AATTGCAGAGAAATCCATTC+CGG - Chr2:54569870-54569889 None:intergenic 35.0%
ACATAAACGGTGTGTAGAAA+TGG + Chr2:54570365-54570384 MsG0280009579.01.T01:three_prime_UTR 35.0%
ACATAACTATCCTGATAGCA+TGG - Chr2:54568697-54568716 None:intergenic 35.0%
ACTTGATCAATGGTTCACTT+AGG + Chr2:54569349-54569368 MsG0280009579.01.T01:intron 35.0%
ATGCTATCAGGATAGTTATG+TGG + Chr2:54568696-54568715 MsG0280009579.01.T01:intron 35.0%
ATGTAATAAATCGTCGTCCT+CGG + Chr2:54570008-54570027 MsG0280009579.01.T01:CDS 35.0%
ATGTACTTCCTCCAAAGTAT+TGG + Chr2:54570070-54570089 MsG0280009579.01.T01:CDS 35.0%
ATTAGACCAAGAAGCTATAG+AGG + Chr2:54569318-54569337 MsG0280009579.01.T01:intron 35.0%
CATAAACGGTGTGTAGAAAT+GGG + Chr2:54570366-54570385 MsG0280009579.01.T01:three_prime_UTR 35.0%
CTTAATGATTCCATGCTATC+AGG + Chr2:54568684-54568703 MsG0280009579.01.T01:intron 35.0%
GAAAGCAATATGCATATCAG+AGG - Chr2:54569458-54569477 None:intergenic 35.0%
GACACTACATGATAGCAAAT+GGG - Chr2:54570119-54570138 None:intergenic 35.0%
GATCCATAAACTATACTCTC+AGG + Chr2:54568822-54568841 MsG0280009579.01.T01:intron 35.0%
TAAGCAGAATTGAGGTTGAA+AGG - Chr2:54568143-54568162 None:intergenic 35.0%
TATTGAAAATCATCCGAAGC+TGG + Chr2:54569799-54569818 MsG0280009579.01.T01:CDS 35.0%
TCCAACAATAGTTGAGCAAA+AGG - Chr2:54569007-54569026 None:intergenic 35.0%
TCTATAGCTTCTTGGTCTAA+TGG - Chr2:54569319-54569338 None:intergenic 35.0%
TGACAAATAGTTTAGGGACT+AGG + Chr2:54568914-54568933 MsG0280009579.01.T01:intron 35.0%
TGACGATATAAAATCCACAG+TGG + Chr2:54569835-54569854 MsG0280009579.01.T01:CDS 35.0%
TTTACTCCTCTATAGCTTCT+TGG - Chr2:54569327-54569346 None:intergenic 35.0%
! AATGGGTAATAGTGTTGAGA+TGG - Chr2:54567887-54567906 MsG0280009578.01.T01:intron 35.0%
! AATTACTTGTGGTGGAAATG+GGG + Chr2:54570271-54570290 MsG0280009579.01.T01:CDS 35.0%
! ACAATTACTTGTGGTGGAAA+TGG + Chr2:54570269-54570288 MsG0280009579.01.T01:CDS 35.0%
! AGGTATAATGTCTGAGACTT+TGG - Chr2:54569936-54569955 None:intergenic 35.0%
! CAATTACTTGTGGTGGAAAT+GGG + Chr2:54570270-54570289 MsG0280009579.01.T01:CDS 35.0%
! CACAAAGGAGATGTTTTCAA+GGG - Chr2:54570477-54570496 None:intergenic 35.0%
! GCTCGTAGATGATTGTATTT+TGG + Chr2:54568631-54568650 MsG0280009579.01.T01:intron 35.0%
! TATAATGTCTGAGACTTTGG+TGG - Chr2:54569933-54569952 None:intergenic 35.0%
! TCCTTTTGCTCAACTATTGT+TGG + Chr2:54569003-54569022 MsG0280009579.01.T01:intron 35.0%
ACATTGCAAATGATCAACCG+AGG - Chr2:54570028-54570047 None:intergenic 40.0%
ACTCAGTAGTCAGTATAGGA+TGG - Chr2:54569488-54569507 None:intergenic 40.0%
AGTAGGAACCCTAGAATGAA+AGG - Chr2:54568067-54568086 MsG0280009578.01.T01:CDS 40.0%
AGTAGTCAGTATAGGATGGA+TGG - Chr2:54569484-54569503 None:intergenic 40.0%
AGTGGAATACATTACCGGAA+TGG + Chr2:54569853-54569872 MsG0280009579.01.T01:CDS 40.0%
CCTCTTCTATGCCAATACTT+TGG - Chr2:54570084-54570103 None:intergenic 40.0%
CCTTGAAAACATCTCCTTTG+TGG + Chr2:54570475-54570494 MsG0280009579.01.T01:three_prime_UTR 40.0%
CGACACTACATGATAGCAAA+TGG - Chr2:54570120-54570139 None:intergenic 40.0%
CTGCAAACCCTTTCATTCTA+GGG + Chr2:54568056-54568075 MsG0280009579.01.T01:CDS 40.0%
CTGTGCTTCTGATGTATTAC+AGG + Chr2:54569670-54569689 MsG0280009579.01.T01:intron 40.0%
CTTCTATGCCAATACTTTGG+AGG - Chr2:54570081-54570100 None:intergenic 40.0%
CTTTGCCTCTTGAAGGATTA+AGG + Chr2:54568540-54568559 MsG0280009579.01.T01:intron 40.0%
GAATGGAAGGAAATGGAAGT+AGG - Chr2:54568084-54568103 None:intergenic 40.0%
GGATACTCAGTAGTCAGTAT+AGG - Chr2:54569492-54569511 None:intergenic 40.0%
GGATTAAGCCTCGACATAAA+CGG + Chr2:54570352-54570371 MsG0280009579.01.T01:three_prime_UTR 40.0%
GTAGGAACCCTAGAATGAAA+GGG - Chr2:54568066-54568085 MsG0280009578.01.T01:CDS 40.0%
GTAGTCAGTATAGGATGGAT+GGG - Chr2:54569483-54569502 None:intergenic 40.0%
TACCTTCTTTGTCAGAGCTA+CGG + Chr2:54568113-54568132 MsG0280009579.01.T01:CDS 40.0%
TCCACAGTGGAATACATTAC+CGG + Chr2:54569848-54569867 MsG0280009579.01.T01:CDS 40.0%
TCGTGAAGAATGGAAGGAAA+TGG - Chr2:54568091-54568110 None:intergenic 40.0%
TCTGCAAACCCTTTCATTCT+AGG + Chr2:54568055-54568074 MsG0280009579.01.T01:CDS 40.0%
TGGAAACCAGTATCACTGTT+GGG - Chr2:54569731-54569750 None:intergenic 40.0%
TGGTGAGAGAGTGATAGTTT+AGG - Chr2:54568769-54568788 None:intergenic 40.0%
TTGGAAACCAGTATCACTGT+TGG - Chr2:54569732-54569751 None:intergenic 40.0%
TTGGGAGGTAGAGTTTGATT+TGG - Chr2:54569713-54569732 None:intergenic 40.0%
TTGTGTTCTTTGCCTCTTGA+AGG + Chr2:54568533-54568552 MsG0280009579.01.T01:intron 40.0%
! AAGACATTGTTGGTTGTCCT+TGG + Chr2:54568461-54568480 MsG0280009579.01.T01:intron 40.0%
! ACTTTGGTGGTAAGAATCTC+CGG - Chr2:54569920-54569939 None:intergenic 40.0%
! AGCAGTAGCAGAACACATTT+TGG - Chr2:54567983-54568002 MsG0280009578.01.T01:intron 40.0%
! ATGCTCTAGTTTGGCTGTTT+GGG + Chr2:54568393-54568412 MsG0280009579.01.T01:intron 40.0%
! CCACAAAGGAGATGTTTTCA+AGG - Chr2:54570478-54570497 None:intergenic 40.0%
! CTGTAATACATCAGAAGCAC+AGG - Chr2:54569672-54569691 None:intergenic 40.0%
! CTTTGGAGGAAGTACATAGT+AGG - Chr2:54570067-54570086 None:intergenic 40.0%
! GGTAATAGTGTTGAGATGGT+GGG - Chr2:54567883-54567902 MsG0280009578.01.T01:intron 40.0%
! GTCCCTGAGAGTATAGTTTA+TGG - Chr2:54568828-54568847 None:intergenic 40.0%
!! CCAAAGTATTGGCATAGAAG+AGG + Chr2:54570081-54570100 MsG0280009579.01.T01:CDS 40.0%
!! GTAGCAGAACACATTTTGGT+TGG - Chr2:54567979-54567998 MsG0280009578.01.T01:intron 40.0%
!!! GTCCTTAGTTTTATGCTCTG+TGG + Chr2:54569052-54569071 MsG0280009579.01.T01:intron 40.0%
AAACCAGTATCACTGTTGGG+AGG - Chr2:54569728-54569747 None:intergenic 45.0%
AACGGAGATTGGAGAAGTGA+TGG - Chr2:54567848-54567867 MsG0280009578.01.T01:intron 45.0%
AATGGGGAGAGATTTGAAGG+AGG + Chr2:54570287-54570306 MsG0280009579.01.T01:exon 45.0%
ACCAGAGAACTGATATCACG+AGG - Chr2:54569431-54569450 None:intergenic 45.0%
ACTCTCAGGGACCAAATTGA+TGG + Chr2:54568836-54568855 MsG0280009579.01.T01:intron 45.0%
AGAAGGTAGGTCGTGAAGAA+TGG - Chr2:54568101-54568120 None:intergenic 45.0%
AGATAGAGAGAATGCATGCG+TGG - Chr2:54567819-54567838 MsG0280009578.01.T01:intron 45.0%
AGCCACTTACACGAACTTCT+CGG - Chr2:54569976-54569995 None:intergenic 45.0%
ATCCCCCGTCGAAAGAATAA+GGG - Chr2:54569086-54569105 None:intergenic 45.0%
ATTGAGTTTCGGCGTTTGGT+TGG + Chr2:54569887-54569906 MsG0280009579.01.T01:CDS 45.0%
CAGAGACGAGTGAAGGATTT+GGG - Chr2:54568039-54568058 MsG0280009578.01.T01:CDS 45.0%
CGCCACAGAGCATAAAACTA+AGG - Chr2:54569057-54569076 None:intergenic 45.0%
GAGTGAAGGATTTGGGAATG+TGG - Chr2:54568032-54568051 MsG0280009578.01.T01:CDS 45.0%
GGAAATGGGGAGAGATTTGA+AGG + Chr2:54570284-54570303 MsG0280009579.01.T01:CDS 45.0%
GGAACATCGATGTAGTGTCA+CGG - Chr2:54570195-54570214 None:intergenic 45.0%
GGATTTGGGAATGTGGTGAT+CGG - Chr2:54568025-54568044 MsG0280009578.01.T01:CDS 45.0%
TCCGGTAATGTATTCCACTG+TGG - Chr2:54569852-54569871 None:intergenic 45.0%
TCCTCGTGATATCAGTTCTC+TGG + Chr2:54569427-54569446 MsG0280009579.01.T01:intron 45.0%
TCTACACACCGTTTATGTCG+AGG - Chr2:54570363-54570382 None:intergenic 45.0%
TGCAATTGAGTTTCGGCGTT+TGG + Chr2:54569883-54569902 MsG0280009579.01.T01:CDS 45.0%
TGCGACCCTTATTCTTTCGA+CGG + Chr2:54569078-54569097 MsG0280009579.01.T01:intron 45.0%
TGGACAACATTGCTACCCTT+TGG + Chr2:54568651-54568670 MsG0280009579.01.T01:intron 45.0%
TGGTGATCGGTGGAAAACAA+GGG - Chr2:54568012-54568031 MsG0280009578.01.T01:CDS 45.0%
TTACACGAACTTCTCGGTGA+AGG - Chr2:54569970-54569989 None:intergenic 45.0%
! CTTTGGTGGTAAGAATCTCC+GGG - Chr2:54569919-54569938 None:intergenic 45.0%
! GATGCTCTAGTTTGGCTGTT+TGG + Chr2:54568392-54568411 MsG0280009579.01.T01:intron 45.0%
! GGGTAATAGTGTTGAGATGG+TGG - Chr2:54567884-54567903 MsG0280009578.01.T01:intron 45.0%
!! AACCGTAGCTCTGACAAAGA+AGG - Chr2:54568118-54568137 None:intergenic 45.0%
!! GATTGGAGAAGTGATGGATG+AGG - Chr2:54567842-54567861 MsG0280009578.01.T01:intron 45.0%
!! GTAGCTCTGACAAAGAAGGT+AGG - Chr2:54568114-54568133 None:intergenic 45.0%
!! AAATTAAAATTGAAAAAAAT+GGG - Chr2:54567904-54567923 MsG0280009578.01.T01:intron 5.0%
ACATCTCCTTTGTGGTGTGC+TGG + Chr2:54570483-54570502 MsG0280009579.01.T01:three_prime_UTR 50.0%
AGTGACGCAGTAACCAGCTT+CGG - Chr2:54569815-54569834 None:intergenic 50.0%
CACCGAGAAGTTCGTGTAAG+TGG + Chr2:54569971-54569990 MsG0280009579.01.T01:CDS 50.0%
CATCCCCCGTCGAAAGAATA+AGG - Chr2:54569087-54569106 None:intergenic 50.0%
CGACCCTTATTCTTTCGACG+GGG + Chr2:54569080-54569099 MsG0280009579.01.T01:intron 50.0%
CTACCTCCCAACAGTGATAC+TGG + Chr2:54569722-54569741 MsG0280009579.01.T01:CDS 50.0%
GACCCTTATTCTTTCGACGG+GGG + Chr2:54569081-54569100 MsG0280009579.01.T01:intron 50.0%
GCAGAGACGAGTGAAGGATT+TGG - Chr2:54568040-54568059 MsG0280009578.01.T01:CDS 50.0%
GCATGCGTGGCATTTCTTGT+AGG - Chr2:54567806-54567825 MsG0280009578.01.T01:intron 50.0%
GCGACCCTTATTCTTTCGAC+GGG + Chr2:54569079-54569098 MsG0280009579.01.T01:intron 50.0%
GGTAGGTCGTGAAGAATGGA+AGG - Chr2:54568097-54568116 None:intergenic 50.0%
GTGGTGATCGGTGGAAAACA+AGG - Chr2:54568013-54568032 MsG0280009578.01.T01:CDS 50.0%
TTTGGGAATGTGGTGATCGG+TGG - Chr2:54568022-54568041 MsG0280009578.01.T01:CDS 50.0%
!! GTGTGTTCTGGAACGGAGAT+TGG - Chr2:54567859-54567878 MsG0280009578.01.T01:intron 50.0%
CGGTGAAGGAACGTGAAGAC+AGG - Chr2:54569956-54569975 None:intergenic 55.0%
GGGTTTGCAGAGACGAGTGA+AGG - Chr2:54568046-54568065 MsG0280009578.01.T01:CDS 55.0%
!! GAGATGGTGGGAGTGTGTTC+TGG - Chr2:54567871-54567890 MsG0280009578.01.T01:intron 55.0%
!! GGTGGGAGTGTGTTCTGGAA+CGG - Chr2:54567866-54567885 MsG0280009578.01.T01:intron 55.0%
GCGTTTGGTTGGCATGTGCC+CGG + Chr2:54569898-54569917 MsG0280009579.01.T01:CDS 60.0%
TCACGGCCAGCACACCACAA+AGG - Chr2:54570492-54570511 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
Chr2 gene 54567801 54570541 54567801 ID=MsG0280009579.01;Name=MsG0280009579.01
Chr2 mRNA 54567801 54570541 54567801 ID=MsG0280009579.01.T01;Parent=MsG0280009579.01;Name=MsG0280009579.01.T01;_AED=0.31;_eAED=0.31;_QI=184|1|1|1|1|1|2|238|253
Chr2 exon 54569692 54570541 54569692 ID=MsG0280009579.01.T01:exon:18393;Parent=MsG0280009579.01.T01
Chr2 exon 54567801 54568134 54567801 ID=MsG0280009579.01.T01:exon:18392;Parent=MsG0280009579.01.T01
Chr2 five_prime_UTR 54567801 54567984 54567801 ID=MsG0280009579.01.T01:five_prime_utr;Parent=MsG0280009579.01.T01
Chr2 CDS 54567985 54568134 54567985 ID=MsG0280009579.01.T01:cds;Parent=MsG0280009579.01.T01
Chr2 CDS 54569692 54570303 54569692 ID=MsG0280009579.01.T01:cds;Parent=MsG0280009579.01.T01
Chr2 three_prime_UTR 54570304 54570541 54570304 ID=MsG0280009579.01.T01:three_prime_utr;Parent=MsG0280009579.01.T01
Gene Sequence

>MsG0280009579.01.T01

ATGTGTTCTGCTACTGCTACAACACCCTTGTTTTCCACCGATCACCACATTCCCAAATCCTTCACTCGTCTCTGCAAACCCTTTCATTCTAGGGTTCCTACTTCCATTTCCTTCCATTCTTCACGACCTACCTTCTTTGTCAGAGCTACGGTTGTAAAATGGCGATGTCCAAATCAAACTCTACCTCCCAACAGTGATACTGGTTTCCAAAAAAAGGTCTTGTATCTAGAATCTATCGGTATTGACTCTTTCTCATTTATTGAAAATCATCCGAAGCTGGTTACTGCGTCACTTGACGATATAAAATCCACAGTGGAATACATTACCGGAATGGATTTCTCTGCAATTGAGTTTCGGCGTTTGGTTGGCATGTGCCCGGAGATTCTTACCACCAAAGTCTCAGACATTATACCTGTCTTCACGTTCCTTCACCGAGAAGTTCGTGTAAGTGGCTCAAATATCAAGCATGTAATAAATCGTCGTCCTCGGTTGATCATTTGCAATGTTGATAAGCAACTTCGTCCTACTATGTACTTCCTCCAAAGTATTGGCATAGAAGAGGTAAACAAGCACACCCATTTGCTATCATGTAGTGTCGAAGACAAGTTTATACCCCGAATTGAATACTTTGAAAATATTGGATTCTCTCGCCGTGACACTACATCGATGTTCCGAAGATTTCCTCAGCTGTTTTGTTATAGTATTAAGAATAATTTGGAGCCTAAATACAATTACTTGTGGTGGAAATGGGGAGAGATTTGA

Protein sequence

>MsG0280009579.01.T01

MCSATATTPLFSTDHHIPKSFTRLCKPFHSRVPTSISFHSSRPTFFVRATVVKWRCPNQTLPPNSDTGFQKKVLYLESIGIDSFSFIENHPKLVTASLDDIKSTVEYITGMDFSAIEFRRLVGMCPEILTTKVSDIIPVFTFLHREVRVSGSNIKHVINRRPRLIICNVDKQLRPTMYFLQSIGIEEVNKHTHLLSCSVEDKFIPRIEYFENIGFSRRDTTSMFRRFPQLFCYSIKNNLEPKYNYLWWKWGEI*