AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025830.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025830.01.T01 MTR_5g035060 96.482 199 7 0 1 199 101 299 9.43e-145 405
MsG0580025830.01.T01 MTR_5g035040 69.849 199 31 3 1 199 207 376 4.58e-91 271
MsG0580025830.01.T01 MTR_5g035050 89.773 88 9 0 112 199 29 116 4.10e-54 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025830.01.T01 AT1G24040 63.684 190 65 3 1 187 114 302 1.19e-83 251
MsG0580025830.01.T01 AT1G24040 63.684 190 65 3 1 187 114 302 1.19e-83 251
MsG0580025830.01.T01 AT1G24040 63.684 190 65 3 1 187 114 302 1.19e-83 251

Find 33 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATAGAGGCAGTGGTGTTAA+TGG 0.295778 5:-24846279 MsG0580025830.01.T01:CDS
CAAATATAAGGCTTATCTTT+CGG 0.336668 5:+24846162 None:intergenic
ACAGCCATGTTACAAATATA+AGG 0.346669 5:+24846150 None:intergenic
GGCTTATCTTTCGGCGGATC+CGG 0.353217 5:+24846171 None:intergenic
GTTTCCGAAAGGGTATATTA+AGG 0.368887 5:-24846379 MsG0580025830.01.T01:CDS
AACACCTTAATATACCCTTT+CGG 0.432789 5:+24846375 None:intergenic
TCTCCCTTCAGGAGGGGCAT+TGG 0.444220 5:-24843422 MsG0580025830.01.T01:intron
GAAGAGGAAATGCAGTTGGC+TGG 0.454362 5:-24846246 MsG0580025830.01.T01:CDS
TAATTCTACTCTTCCGTCGC+CGG 0.460000 5:-24846190 MsG0580025830.01.T01:CDS
GAGGAGTTTGATGCCGCATA+TGG 0.462290 5:-24846319 MsG0580025830.01.T01:CDS
CAAGCGAGGAACTGATTTCT+CGG 0.465423 5:-24843382 MsG0580025830.01.T01:CDS
TGCGTCTCTGCAACAACAGC+AGG 0.469429 5:+24843249 None:intergenic
ATTTCTCGGATGAGTTCATC+AGG 0.474442 5:-24843368 MsG0580025830.01.T01:CDS
CTGTTGATAAATCTCTTAGA+AGG 0.476108 5:-24846131 MsG0580025830.01.T01:intron
CGCTATTGTGTGCTTGCTTG+CGG 0.480160 5:-24846424 MsG0580025830.01.T01:CDS
CATGGCACGTTTGTTTCTGA+AGG 0.497482 5:+24843188 None:intergenic
CCTTCAGGAGGGGCATTGGA+TGG 0.505384 5:-24843418 MsG0580025830.01.T01:intron
CATTGGATGGCATCTTCTAA+AGG 0.517341 5:-24843405 MsG0580025830.01.T01:CDS
TGAAACAGTATTTGATTGAA+CGG 0.524045 5:-24846341 MsG0580025830.01.T01:CDS
AAGAGGAAATGCAGTTGGCT+GGG 0.542657 5:-24846245 MsG0580025830.01.T01:CDS
TCTTTCGGCGGATCCGGCGA+CGG 0.556296 5:+24846177 None:intergenic
GGCAGTGGTGTTAATGGTGA+TGG 0.556640 5:-24846273 MsG0580025830.01.T01:CDS
AATCGATGATGTTTCCGAAA+GGG 0.568903 5:-24846389 MsG0580025830.01.T01:CDS
GCAATCAAAGTCGCCATATG+CGG 0.587969 5:+24846306 None:intergenic
TACTCATAGTCATTAGAACA+TGG 0.612730 5:+24843170 None:intergenic
ATATAAGGCTTATCTTTCGG+CGG 0.617990 5:+24846165 None:intergenic
TCTGAAGGCATACTTAAGAG+AGG 0.626310 5:+24843203 None:intergenic
TAAGCCTTATATTTGTAACA+TGG 0.633641 5:-24846154 MsG0580025830.01.T01:CDS
TAATGGTGATGGTGAAGAAG+AGG 0.637013 5:-24846262 MsG0580025830.01.T01:CDS
GAATCGATGATGTTTCCGAA+AGG 0.637311 5:-24846390 MsG0580025830.01.T01:CDS
TGAAGAAGAGGAAATGCAGT+TGG 0.653928 5:-24846250 MsG0580025830.01.T01:CDS
GCATCTTCTAAAGGCAAGCG+AGG 0.659909 5:-24843396 MsG0580025830.01.T01:CDS
AACAGTATTTGATTGAACGG+AGG 0.685549 5:-24846338 MsG0580025830.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAATAATAAATAGTTTA+CGG - Chr5:24845358-24845377 MsG0580025830.01.T01:intron 10.0%
!!! AAATGTAATTAATTTTGTAT+AGG - Chr5:24845262-24845281 MsG0580025830.01.T01:intron 10.0%
!!! AATGTAATTAATTTTGTATA+GGG - Chr5:24845263-24845282 MsG0580025830.01.T01:intron 10.0%
!! AAAGAGTAATAAATAGTTAA+TGG + Chr5:24845540-24845559 None:intergenic 15.0%
!! AAATAACATTAATGTTTCAT+TGG + Chr5:24845506-24845525 None:intergenic 15.0%
!! AAATGTAATCAATTATGTAT+TGG + Chr5:24845638-24845657 None:intergenic 15.0%
!! ATGTTATAATAGTTATAACA+AGG + Chr5:24845875-24845894 None:intergenic 15.0%
!! TAAAAATTAGTTAATGTGTT+TGG + Chr5:24844132-24844151 None:intergenic 15.0%
!! TAAATAGTTAATGGTATAAA+AGG + Chr5:24845531-24845550 None:intergenic 15.0%
!! TATCAAATTTGCAAAAAATT+TGG - Chr5:24844301-24844320 MsG0580025830.01.T01:intron 15.0%
!! TTTCCATTATTTAAAGATTA+AGG - Chr5:24844557-24844576 MsG0580025830.01.T01:intron 15.0%
!!! AAAAATTTGGACTATTTTAA+CGG - Chr5:24844314-24844333 MsG0580025830.01.T01:intron 15.0%
!! ACAAAATTATCCTTCATTAA+CGG - Chr5:24845305-24845324 MsG0580025830.01.T01:intron 20.0%
!! ACCAAAATGACTAATAATTT+GGG + Chr5:24845224-24845243 None:intergenic 20.0%
!! ACCAATATAATACATATTCT+GGG - Chr5:24844489-24844508 MsG0580025830.01.T01:intron 20.0%
!! AGCTATATTTAATATCAAAG+AGG + Chr5:24844786-24844805 None:intergenic 20.0%
!! ATATAGCTTATACATAAACA+TGG - Chr5:24844798-24844817 MsG0580025830.01.T01:intron 20.0%
!! ATGCTAAAAGTTACTATTAT+AGG + Chr5:24846010-24846029 None:intergenic 20.0%
!! ATTTCTTAATCTGTGTAAAA+TGG - Chr5:24845654-24845673 MsG0580025830.01.T01:intron 20.0%
!! CAACCTTAATCTTTAAATAA+TGG + Chr5:24844563-24844582 None:intergenic 20.0%
!! GAAATGCATAAATTTAACAA+TGG + Chr5:24844076-24844095 None:intergenic 20.0%
!! TGTAAAACGACATATAATTT+GGG + Chr5:24845480-24845499 None:intergenic 20.0%
!! TTGTAAAACGACATATAATT+TGG + Chr5:24845481-24845500 None:intergenic 20.0%
!!! AAATCAACTATACATTCTTT+TGG + Chr5:24843591-24843610 None:intergenic 20.0%
!!! AACATAAATTTCTAGTAATG+TGG + Chr5:24843813-24843832 None:intergenic 20.0%
!!! ACATATTGATTTTTTTTGGT+AGG + Chr5:24845827-24845846 None:intergenic 20.0%
!!! AGTTGACATATTGATTTTTT+TGG + Chr5:24845803-24845822 None:intergenic 20.0%
!!! GAGATTTCTTTTAATGTTTA+TGG - Chr5:24843397-24843416 MsG0580025830.01.T01:CDS 20.0%
!!! GTTGACATATTGATTTTTTT+GGG + Chr5:24845802-24845821 None:intergenic 20.0%
!!! GTTGACATATTGATTTTTTT+TGG + Chr5:24845802-24845821 None:intergenic 20.0%
! ACAAAATTATCCTTCGTTAA+TGG + Chr5:24845591-24845610 None:intergenic 25.0%
! AGCTTAATTATTTATACTGC+AGG + Chr5:24845142-24845161 None:intergenic 25.0%
! CAAATATAAGGCTTATCTTT+CGG + Chr5:24843454-24843473 None:intergenic 25.0%
! GACCAAAATGACTAATAATT+TGG + Chr5:24845225-24845244 None:intergenic 25.0%
! GACCAATATAATACATATTC+TGG - Chr5:24844488-24844507 MsG0580025830.01.T01:intron 25.0%
! GAGCTTATGTAAATAGTTTA+TGG - Chr5:24844664-24844683 MsG0580025830.01.T01:intron 25.0%
! GTCAAAACGACTTATAATTT+GGG - Chr5:24845676-24845695 MsG0580025830.01.T01:intron 25.0%
! TAAATAGTTTACGGTATAGT+AGG - Chr5:24845367-24845386 MsG0580025830.01.T01:intron 25.0%
! TAATGAGTTAGATCGAAATA+GGG - Chr5:24843979-24843998 MsG0580025830.01.T01:intron 25.0%
! TCCCAGAATATGTATTATAT+TGG + Chr5:24844493-24844512 None:intergenic 25.0%
! TGAAACAGTATTTGATTGAA+CGG - Chr5:24843272-24843291 MsG0580025830.01.T01:CDS 25.0%
! TGACATAGTAAATGAATATG+TGG + Chr5:24844210-24844229 None:intergenic 25.0%
! TTAATGAGTTAGATCGAAAT+AGG - Chr5:24843978-24843997 MsG0580025830.01.T01:intron 25.0%
! TTATCAGAGAAATAAGTTCA+GGG + Chr5:24844434-24844453 None:intergenic 25.0%
! TTTATCAGAGAAATAAGTTC+AGG + Chr5:24844435-24844454 None:intergenic 25.0%
!! AGCTTAAAACAAGTTGAAAT+TGG + Chr5:24844702-24844721 None:intergenic 25.0%
!! GAGAGTACATTATTACAATT+TGG + Chr5:24845188-24845207 None:intergenic 25.0%
!! GCTTTTGTATACATGTTAAA+TGG + Chr5:24846308-24846327 None:intergenic 25.0%
!! TAAGCCTTATATTTGTAACA+TGG - Chr5:24843459-24843478 MsG0580025830.01.T01:intron 25.0%
!! TACAATTTGGAATTCATTGA+TGG + Chr5:24845175-24845194 None:intergenic 25.0%
!! TCCCAAATTATTAGTCATTT+TGG - Chr5:24845220-24845239 MsG0580025830.01.T01:intron 25.0%
!! TTGCATTTGTTGGATTAATT+TGG - Chr5:24843537-24843556 MsG0580025830.01.T01:intron 25.0%
!!! AGGTTAAGTAGGATATTTTT+TGG - Chr5:24844956-24844975 MsG0580025830.01.T01:intron 25.0%
!!! AGTTGATTTGAAGAATCAAT+AGG - Chr5:24843602-24843621 MsG0580025830.01.T01:intron 25.0%
!!! GAAAGTATTTAACACTAACA+AGG + Chr5:24844999-24845018 None:intergenic 25.0%
!!! GGTTAAGTAGGATATTTTTT+GGG - Chr5:24844957-24844976 MsG0580025830.01.T01:intron 25.0%
!!! GTTGATTTGAAGAATCAATA+GGG - Chr5:24843603-24843622 MsG0580025830.01.T01:intron 25.0%
!!! TAATTTTTTACTCTTCTGCT+AGG - Chr5:24844936-24844955 MsG0580025830.01.T01:intron 25.0%
!!! TTTTTTTTTACCTTTTCCTG+TGG - Chr5:24845948-24845967 MsG0580025830.01.T01:intron 25.0%
AAACGACTTATAATTTGGGA+CGG - Chr5:24845680-24845699 MsG0580025830.01.T01:intron 30.0%
AACACCTTAATATACCCTTT+CGG + Chr5:24843241-24843260 None:intergenic 30.0%
AAGCTAGAACTATTAGAAGT+GGG - Chr5:24844882-24844901 MsG0580025830.01.T01:intron 30.0%
AAGGAAAGTAAGTCAAATAG+AGG - Chr5:24843901-24843920 MsG0580025830.01.T01:intron 30.0%
AAGTAAGTCAAATAGAGGAT+AGG - Chr5:24843906-24843925 MsG0580025830.01.T01:intron 30.0%
ACAACATTACACATGCTTTA+AGG - Chr5:24843508-24843527 MsG0580025830.01.T01:intron 30.0%
ACAGCCATGTTACAAATATA+AGG + Chr5:24843466-24843485 None:intergenic 30.0%
AGATACTTGAGCTTATCTAT+TGG - Chr5:24844611-24844630 MsG0580025830.01.T01:intron 30.0%
ATAGTTTATGGCATGTCTAT+AGG - Chr5:24844676-24844695 MsG0580025830.01.T01:intron 30.0%
ATGCATTTCATGTCAACATT+AGG - Chr5:24844087-24844106 MsG0580025830.01.T01:intron 30.0%
ATTGGGAGGACTAATTAAAA+TGG - Chr5:24843646-24843665 MsG0580025830.01.T01:intron 30.0%
CATTCAAACTAGAGTGAATA+GGG + Chr5:24844366-24844385 None:intergenic 30.0%
CATTTAACATGCAATGTCAT+AGG + Chr5:24843766-24843785 None:intergenic 30.0%
CTCAAAGCGACTTATAATTT+GGG - Chr5:24845732-24845751 MsG0580025830.01.T01:intron 30.0%
GGTCAAAACGACTTATAATT+TGG - Chr5:24845675-24845694 MsG0580025830.01.T01:intron 30.0%
GTTAGAATCCAATTACATTC+AGG + Chr5:24846159-24846178 None:intergenic 30.0%
TAACTGTAGAAGTTATGAGA+GGG - Chr5:24844239-24844258 MsG0580025830.01.T01:intron 30.0%
TAAGCTAGAACTATTAGAAG+TGG - Chr5:24844881-24844900 MsG0580025830.01.T01:intron 30.0%
TACTCATAGTCATTAGAACA+TGG + Chr5:24846446-24846465 None:intergenic 30.0%
TCATTCAAACTAGAGTGAAT+AGG + Chr5:24844367-24844386 None:intergenic 30.0%
TCTCAAAGCGACTTATAATT+TGG - Chr5:24845731-24845750 MsG0580025830.01.T01:intron 30.0%
TGAAGAATCAATAGGGAAAT+TGG - Chr5:24843610-24843629 MsG0580025830.01.T01:intron 30.0%
TGCATTTCATGTCAACATTA+GGG - Chr5:24844088-24844107 MsG0580025830.01.T01:intron 30.0%
TTAATATCAAAGAGGAAACG+TGG + Chr5:24844778-24844797 None:intergenic 30.0%
! ACTTTGATTGCGTTTTATAG+AGG - Chr5:24843319-24843338 MsG0580025830.01.T01:CDS 30.0%
! CTGTTGATAAATCTCTTAGA+AGG - Chr5:24843482-24843501 MsG0580025830.01.T01:intron 30.0%
! CTTTTCAATACCATTAACGA+AGG - Chr5:24845578-24845597 MsG0580025830.01.T01:intron 30.0%
! GACATGTGAATTTTGTAGTA+AGG - Chr5:24843882-24843901 MsG0580025830.01.T01:intron 30.0%
! GTTTTACACCTGAATGTAAT+TGG - Chr5:24846148-24846167 MsG0580025830.01.T01:CDS 30.0%
! TAAAAGTTCAAGTTCAAGCA+AGG + Chr5:24845032-24845051 None:intergenic 30.0%
!! ATTGGTGTTTGACTTGATAT+TGG - Chr5:24843628-24843647 MsG0580025830.01.T01:intron 30.0%
!! CTTTTTCATACCGTTAATGA+AGG + Chr5:24845318-24845337 None:intergenic 30.0%
!! TTGGTGTTTGACTTGATATT+GGG - Chr5:24843629-24843648 MsG0580025830.01.T01:intron 30.0%
AACAGTATTTGATTGAACGG+AGG - Chr5:24843275-24843294 MsG0580025830.01.T01:CDS 35.0%
AAGCGACTTATAATTTGGGA+CGG + Chr5:24845755-24845736 None:intergenic 35.0%
AAGCGACTTATAATTTGGGA+TGG - Chr5:24845736-24845755 MsG0580025830.01.T01:intron 35.0%
AATCGATGATGTTTCCGAAA+GGG - Chr5:24843224-24843243 MsG0580025830.01.T01:CDS 35.0%
ACTATTAGAAGTGGGTGAAA+AGG - Chr5:24844890-24844909 MsG0580025830.01.T01:intron 35.0%
AGCATCCAAGATTAAGATTG+AGG - Chr5:24846025-24846044 MsG0580025830.01.T01:intron 35.0%
ATATAAGGCTTATCTTTCGG+CGG + Chr5:24843451-24843470 None:intergenic 35.0%
ATGCAAGCCATTAGAATTTC+AGG + Chr5:24846072-24846091 None:intergenic 35.0%
ATTAGGGCTATTATCACTTC+AGG - Chr5:24844104-24844123 MsG0580025830.01.T01:intron 35.0%
ATTGGTCAAATTTGTCCTCA+TGG + Chr5:24844475-24844494 None:intergenic 35.0%
CATGTTCAATTTAATCCCCA+TGG - Chr5:24844164-24844183 MsG0580025830.01.T01:intron 35.0%
CTAACTGTAGAAGTTATGAG+AGG - Chr5:24844238-24844257 MsG0580025830.01.T01:intron 35.0%
CTATTAGAAGTGGGTGAAAA+GGG - Chr5:24844891-24844910 MsG0580025830.01.T01:intron 35.0%
GCACGTTAAATTCATGCATT+TGG - Chr5:24843833-24843852 MsG0580025830.01.T01:intron 35.0%
GGTTACCTCAATCTTAATCT+TGG + Chr5:24846033-24846052 None:intergenic 35.0%
TCAGGAGGAGAATATATCTT+TGG + Chr5:24846054-24846073 None:intergenic 35.0%
TCCCAAATTATAAGTCGCTT+CGG - Chr5:24845441-24845460 MsG0580025830.01.T01:intron 35.0%
TCGTAACGAGTTAGTCAAAA+TGG + Chr5:24844266-24844285 None:intergenic 35.0%
TGAACATGTGATCTTACATG+TGG - Chr5:24843784-24843803 MsG0580025830.01.T01:intron 35.0%
TGTGGCTAAATGCATATTCA+GGG - Chr5:24844521-24844540 MsG0580025830.01.T01:intron 35.0%
TTACACATCTATATACGCTC+CGG + Chr5:24844864-24844883 None:intergenic 35.0%
TTCTCCTCCTGAAATTCTAA+TGG - Chr5:24846062-24846081 MsG0580025830.01.T01:intron 35.0%
! GACTTATAATTTGGGATGGA+GGG - Chr5:24845740-24845759 MsG0580025830.01.T01:intron 35.0%
! GTTTCCGAAAGGGTATATTA+AGG - Chr5:24843234-24843253 MsG0580025830.01.T01:CDS 35.0%
!! AAGGCTTGATTTGCATTTGT+TGG - Chr5:24843527-24843546 MsG0580025830.01.T01:intron 35.0%
!! TATTCTGGGACTAATTTGTG+TGG - Chr5:24844503-24844522 MsG0580025830.01.T01:intron 35.0%
!!! CAACTTGTTTTAAGCTCTCA+AGG - Chr5:24844706-24844725 MsG0580025830.01.T01:intron 35.0%
!!! TTGTTTTAAGCTCTCAAGGA+TGG - Chr5:24844710-24844729 MsG0580025830.01.T01:intron 35.0%
ACTCAAAGAAAGTAGACCAC+AGG + Chr5:24845967-24845986 None:intergenic 40.0%
ACTCTTCTGCTAGGTTAAGT+AGG - Chr5:24844945-24844964 MsG0580025830.01.T01:intron 40.0%
AGAAAGTAGACCACAGGAAA+AGG + Chr5:24845961-24845980 None:intergenic 40.0%
ATTTCTCGGATGAGTTCATC+AGG - Chr5:24846245-24846264 MsG0580025830.01.T01:CDS 40.0%
CAAGCCATTAGAATTTCAGG+AGG + Chr5:24846069-24846088 None:intergenic 40.0%
CAATTTAATCCCCATGGTGT+AGG - Chr5:24844170-24844189 MsG0580025830.01.T01:intron 40.0%
CATTGGATGGCATCTTCTAA+AGG - Chr5:24846208-24846227 MsG0580025830.01.T01:CDS 40.0%
CCCAAATTATAAGTCGCTTC+GGG - Chr5:24845442-24845461 MsG0580025830.01.T01:intron 40.0%
CCCGAAGCGACTTATAATTT+GGG + Chr5:24845445-24845464 None:intergenic 40.0%
CTTTGAGTCAATGCATGCTA+TGG - Chr5:24845979-24845998 MsG0580025830.01.T01:intron 40.0%
GAATCGATGATGTTTCCGAA+AGG - Chr5:24843223-24843242 MsG0580025830.01.T01:CDS 40.0%
GTGGCTAAATGCATATTCAG+GGG - Chr5:24844522-24844541 MsG0580025830.01.T01:intron 40.0%
GTGTGGCTAAATGCATATTC+AGG - Chr5:24844520-24844539 MsG0580025830.01.T01:intron 40.0%
GTTGTTTATTCAAACCCTCC+CGG - Chr5:24844842-24844861 MsG0580025830.01.T01:intron 40.0%
TACACATCTATATACGCTCC+GGG + Chr5:24844863-24844882 None:intergenic 40.0%
TCACAAACCAATTCACGTGT+AGG + Chr5:24844588-24844607 None:intergenic 40.0%
TCCCGAAGCGACTTATAATT+TGG + Chr5:24845446-24845465 None:intergenic 40.0%
TGAAGAAGAGGAAATGCAGT+TGG - Chr5:24843363-24843382 MsG0580025830.01.T01:CDS 40.0%
! ACTTTTAGCACAGACAGAGT+AGG - Chr5:24845045-24845064 MsG0580025830.01.T01:intron 40.0%
! ATTGCGTTTTATAGAGGCAG+TGG - Chr5:24843325-24843344 MsG0580025830.01.T01:CDS 40.0%
! CGACTTATAATTTGGGATGG+AGG - Chr5:24845739-24845758 MsG0580025830.01.T01:intron 40.0%
! CTTTTAGCACAGACAGAGTA+GGG - Chr5:24845046-24845065 MsG0580025830.01.T01:intron 40.0%
! GACTTATAATTTGGGACGGA+GGG - Chr5:24845684-24845703 MsG0580025830.01.T01:intron 40.0%
! GACTTATAATTTGGGACGGA+GGG + Chr5:24845703-24845684 None:intergenic 40.0%
! TATAGAGGCAGTGGTGTTAA+TGG - Chr5:24843334-24843353 MsG0580025830.01.T01:CDS 40.0%
! TCTGAAGGCATACTTAAGAG+AGG + Chr5:24846413-24846432 None:intergenic 40.0%
!! GTGTTTGACTTGATATTGGG+AGG - Chr5:24843632-24843651 MsG0580025830.01.T01:intron 40.0%
!! TAATGGTGATGGTGAAGAAG+AGG - Chr5:24843351-24843370 MsG0580025830.01.T01:CDS 40.0%
!! TAGAAGTGTCAAGAACCATG+AGG - Chr5:24844457-24844476 MsG0580025830.01.T01:intron 40.0%
AAGAGGAAATGCAGTTGGCT+GGG - Chr5:24843368-24843387 MsG0580025830.01.T01:CDS 45.0%
CACGTAAATCCTACACCATG+GGG + Chr5:24844182-24844201 None:intergenic 45.0%
CCACGTAAATCCTACACCAT+GGG + Chr5:24844183-24844202 None:intergenic 45.0%
GCAATCAAAGTCGCCATATG+CGG + Chr5:24843310-24843329 None:intergenic 45.0%
GTCAAATAGAGGATAGGCAG+AGG - Chr5:24843912-24843931 MsG0580025830.01.T01:intron 45.0%
TAATTCTACTCTTCCGTCGC+CGG - Chr5:24843423-24843442 MsG0580025830.01.T01:intron 45.0%
TCCACGTAAATCCTACACCA+TGG + Chr5:24844184-24844203 None:intergenic 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + Chr5:24844048-24844067 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + Chr5:24844049-24844068 None:intergenic 45.0%
! CAAGCGAGGAACTGATTTCT+CGG - Chr5:24846231-24846250 MsG0580025830.01.T01:CDS 45.0%
! CGACTTATAATTTGGGACGG+AGG - Chr5:24845683-24845702 MsG0580025830.01.T01:intron 45.0%
! CGACTTATAATTTGGGACGG+AGG + Chr5:24845702-24845683 None:intergenic 45.0%
! GGACGGAGGGAGTATAATTT+GGG - Chr5:24845697-24845716 MsG0580025830.01.T01:intron 45.0%
! TCAAGCCTTATCCCACTAAG+TGG + Chr5:24844050-24844069 None:intergenic 45.0%
!! CATGGCACGTTTGTTTCTGA+AGG + Chr5:24846428-24846447 None:intergenic 45.0%
!! TTCTAAGAGTGTCTCCCTTC+AGG - Chr5:24846180-24846199 MsG0580025830.01.T01:CDS 45.0%
ACATCTATATACGCTCCGGG+AGG + Chr5:24844860-24844879 None:intergenic 50.0%
CATCTATATACGCTCCGGGA+GGG + Chr5:24844859-24844878 None:intergenic 50.0%
CCCATGGTGTAGGATTTACG+TGG - Chr5:24844180-24844199 MsG0580025830.01.T01:intron 50.0%
CGCTATTGTGTGCTTGCTTG+CGG - Chr5:24843189-24843208 MsG0580025830.01.T01:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + Chr5:24844044-24844063 None:intergenic 50.0%
GAAGAGGAAATGCAGTTGGC+TGG - Chr5:24843367-24843386 MsG0580025830.01.T01:CDS 50.0%
GAGGAGTTTGATGCCGCATA+TGG - Chr5:24843294-24843313 MsG0580025830.01.T01:CDS 50.0%
GCTCTCAACACACTCACAAG+TGG + Chr5:24844648-24844667 None:intergenic 50.0%
! GCATCTTCTAAAGGCAAGCG+AGG - Chr5:24846217-24846236 MsG0580025830.01.T01:CDS 50.0%
! GGCAGTGGTGTTAATGGTGA+TGG - Chr5:24843340-24843359 MsG0580025830.01.T01:CDS 50.0%
! GGGACGGAGGGAGTATAATT+TGG - Chr5:24845696-24845715 MsG0580025830.01.T01:intron 50.0%
!! AAGAGTGTCTCCCTTCAGGA+GGG - Chr5:24846184-24846203 MsG0580025830.01.T01:CDS 50.0%
!! TAAGAGTGTCTCCCTTCAGG+AGG - Chr5:24846183-24846202 MsG0580025830.01.T01:CDS 50.0%
ATGTAGCCGACCCCACTTAG+TGG - Chr5:24844035-24844054 MsG0580025830.01.T01:intron 55.0%
CATCCAATGCCCCTCCTGAA+GGG + Chr5:24846197-24846216 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - Chr5:24844042-24844061 MsG0580025830.01.T01:intron 55.0%
GGCTTATCTTTCGGCGGATC+CGG + Chr5:24843445-24843464 None:intergenic 55.0%
GGTTGCGCCTACACGTGAAT+TGG - Chr5:24844578-24844597 MsG0580025830.01.T01:intron 55.0%
TGCGTCTCTGCAACAACAGC+AGG + Chr5:24846367-24846386 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG - Chr5:24844036-24844055 MsG0580025830.01.T01:intron 55.0%
! AGAGTGTCTCCCTTCAGGAG+GGG - Chr5:24846185-24846204 MsG0580025830.01.T01:CDS 55.0%
CCATCCAATGCCCCTCCTGA+AGG + Chr5:24846198-24846217 None:intergenic 60.0%
! TCTCCCTTCAGGAGGGGCAT+TGG - Chr5:24846191-24846210 MsG0580025830.01.T01:CDS 60.0%
!! CCTTCAGGAGGGGCATTGGA+TGG - Chr5:24846195-24846214 MsG0580025830.01.T01:CDS 60.0%
TCTTTCGGCGGATCCGGCGA+CGG + Chr5:24843439-24843458 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
Chr5 gene 24843169 24846466 24843169 ID=MsG0580025830.01;Name=MsG0580025830.01
Chr5 mRNA 24843169 24846466 24843169 ID=MsG0580025830.01.T01;Parent=MsG0580025830.01;Name=MsG0580025830.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0|0|1|1|1|2|0|199
Chr5 exon 24846132 24846466 24846132 ID=MsG0580025830.01.T01:exon:4001;Parent=MsG0580025830.01.T01
Chr5 exon 24843169 24843433 24843169 ID=MsG0580025830.01.T01:exon:4000;Parent=MsG0580025830.01.T01
Chr5 CDS 24846132 24846466 24846132 ID=MsG0580025830.01.T01:cds;Parent=MsG0580025830.01.T01
Chr5 CDS 24843169 24843433 24843169 ID=MsG0580025830.01.T01:cds;Parent=MsG0580025830.01.T01
Gene Sequence

>MsG0580025830.01.T01

ATGCGTGACAGCGAAGTTGACGCTATTGTGTGCTTGCTTGCGGATTCTTTCGCTGAATCGATGATGTTTCCGAAAGGGTATATTAAGGTGTTGAGATTTCTTGTGAAACAGTATTTGATTGAACGGAGGAGTTTGATGCCGCATATGGCGACTTTGATTGCGTTTTATAGAGGCAGTGGTGTTAATGGTGATGGTGAAGAAGAGGAAATGCAGTTGGCTGGGACTGTTGAGATTTCTTTTAATGTTTATGGTGCTAATTCTACTCTTCCGTCGCCGGATCCGCCGAAAGATAAGCCTTATATTTGTAACATGGCTGTTGATAAATCTCTTAGAAGGAGGGGCATTGGATGGCATCTTCTAAAGGCAAGCGAGGAACTGATTTCTCGGATGAGTTCATCAGGAGAAGTTTACTTGCATTGCAGAATGATTGATGAAGCTCCATTTAACATGTATACAAAAGCTGATTACAAAATTGTAACGACAGATAGTATTTTAGTCCTGCTGTTGTTGCAGAGACGCAAACACTTGATGTGCAAGAAACTTCCTCTCTTAAGTATGCCTTCAGAAACAAACGTGCCATGTTCTAATGACTATGAGTAA

Protein sequence

>MsG0580025830.01.T01

MRDSEVDAIVCLLADSFAESMMFPKGYIKVLRFLVKQYLIERRSLMPHMATLIAFYRGSGVNGDGEEEEMQLAGTVEISFNVYGANSTLPSPDPPKDKPYICNMAVDKSLRRRGIGWHLLKASEELISRMSSSGEVYLHCRMIDEAPFNMYTKADYKIVTTDSILVLLLLQRRKHLMCKKLPLLSMPSETNVPCSNDYE*