Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031376.01.T01 | XP_013451336.1 | 100 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0 | 918 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031376.01.T01 | O64937 | 96.868 | 447 | 14 | 0 | 1 | 447 | 1 | 447 | 0 | 901 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031376.01.T01 | A0A221C697 | 100.000 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0.0 | 918 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048938.01 | MsG0680031376.01 | -0.825220 | 5.277459e-54 | 4.780878e-51 |
| MsG0180000097.01 | MsG0680031376.01 | 0.837732 | 4.370536e-57 | 5.729413e-54 |
| MsG0180000280.01 | MsG0680031376.01 | 0.806769 | 7.003194e-50 | 3.833453e-47 |
| MsG0180000814.01 | MsG0680031376.01 | -0.826333 | 2.873178e-54 | 2.686470e-51 |
| MsG0180005881.01 | MsG0680031376.01 | 0.850248 | 1.919740e-60 | 3.737216e-57 |
| MsG0380013342.01 | MsG0680031376.01 | -0.839684 | 1.367596e-57 | 1.902821e-54 |
| MsG0680031376.01 | MsG0680031377.01 | 0.918825 | 9.649380e-87 | 2.999229e-82 |
| MsG0680031376.01 | MsG0680034909.01 | 0.811916 | 5.509171e-51 | 3.453516e-48 |
| MsG0680031376.01 | MsG0680035707.01 | -0.817554 | 3.105311e-52 | 2.268618e-49 |
| MsG0680031376.01 | MsG0780040559.01 | 0.836535 | 8.840004e-57 | 1.117217e-53 |
| MsG0680031376.01 | MsG0780041015.01 | 0.817951 | 2.526869e-52 | 1.866168e-49 |
| MsG0680031376.01 | MsG0780041191.01 | -0.815248 | 1.019038e-51 | 6.988616e-49 |
| MsG0680031376.01 | MsG0780041238.01 | 0.875532 | 2.862003e-68 | 1.340897e-64 |
| MsG0680031376.01 | MsG0780041301.01 | -0.813221 | 2.856104e-51 | 1.854043e-48 |
| MsG0680031376.01 | MsG0880042000.01 | -0.801696 | 7.970289e-49 | 3.831112e-46 |
| MsG0680031376.01 | MsG0880042435.01 | 0.806269 | 8.928629e-50 | 4.825591e-47 |
| MsG0680031376.01 | MsG0880042987.01 | 0.833993 | 3.874020e-56 | 4.536665e-53 |
| MsG0680031376.01 | MsG0880045285.01 | -0.820250 | 7.573564e-53 | 5.961454e-50 |
| MsG0680031376.01 | MsG0880045783.01 | -0.811084 | 8.355333e-51 | 5.124033e-48 |
| MsG0680031376.01 | MsG0880047045.01 | -0.807564 | 4.752702e-50 | 2.655770e-47 |
| MsG0480020322.01 | MsG0680031376.01 | -0.815792 | 7.709713e-52 | 5.367690e-49 |
| MsG0480020323.01 | MsG0680031376.01 | -0.808842 | 2.539400e-50 | 1.467329e-47 |
| MsG0480022178.01 | MsG0680031376.01 | -0.808418 | 3.128100e-50 | 1.787644e-47 |
| MsG0480022489.01 | MsG0680031376.01 | 0.808893 | 2.476530e-50 | 1.432910e-47 |
| MsG0580024435.01 | MsG0680031376.01 | -0.807997 | 3.845134e-50 | 2.173166e-47 |
| MsG0580025827.01 | MsG0680031376.01 | -0.807469 | 4.978740e-50 | 2.775432e-47 |
| MsG0380015849.01 | MsG0680031376.01 | 0.807762 | 4.315164e-50 | 2.423745e-47 |
| MsG0380016182.01 | MsG0680031376.01 | -0.802000 | 6.904236e-49 | 3.344439e-46 |
| MsG0380016201.01 | MsG0680031376.01 | 0.845553 | 3.780464e-59 | 6.323135e-56 |
| MsG0380016527.01 | MsG0680031376.01 | -0.802639 | 5.098752e-49 | 2.510402e-46 |
| MsG0480018226.01 | MsG0680031376.01 | -0.810449 | 1.146246e-50 | 6.911298e-48 |
| MsG0480018236.01 | MsG0680031376.01 | -0.823181 | 1.590852e-53 | 1.359860e-50 |
| MsG0580028118.01 | MsG0680031376.01 | 0.804506 | 2.090954e-49 | 1.079934e-46 |
| MsG0580029514.01 | MsG0680031376.01 | 0.818681 | 1.726535e-52 | 1.301031e-49 |
| MsG0580029999.01 | MsG0680031376.01 | 0.828704 | 7.754515e-55 | 7.767305e-52 |
| MsG0280008112.01 | MsG0680031376.01 | -0.804877 | 1.748989e-49 | 9.121604e-47 |
PPI
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031376.01.T01 | MTR_6g021800 | 100.000 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0.0 | 918 |
| MsG0680031376.01.T01 | MTR_6g021805 | 100.000 | 447 | 0 | 0 | 1 | 447 | 1 | 447 | 0.0 | 918 |
| MsG0680031376.01.T01 | MTR_1g495705 | 96.652 | 448 | 14 | 1 | 1 | 447 | 1 | 448 | 0.0 | 895 |
| MsG0680031376.01.T01 | MTR_1g095650 | 96.652 | 448 | 14 | 1 | 1 | 447 | 1 | 448 | 0.0 | 895 |
| MsG0680031376.01.T01 | MTR_1g095703 | 96.429 | 448 | 15 | 1 | 1 | 447 | 1 | 448 | 0.0 | 895 |
| MsG0680031376.01.T01 | MTR_4g014810 | 95.302 | 447 | 21 | 0 | 1 | 447 | 1 | 447 | 0.0 | 891 |
| MsG0680031376.01.T01 | MTR_1g013680 | 95.227 | 440 | 18 | 1 | 1 | 437 | 1 | 440 | 0.0 | 865 |
| MsG0680031376.01.T01 | MTR_1g085410 | 81.336 | 434 | 81 | 0 | 1 | 434 | 1 | 434 | 0.0 | 739 |
| MsG0680031376.01.T01 | MTR_1g101870 | 80.182 | 439 | 82 | 3 | 1 | 439 | 1 | 434 | 0.0 | 726 |
| MsG0680031376.01.T01 | MTR_1g101870 | 80.182 | 439 | 82 | 3 | 1 | 439 | 1 | 434 | 0.0 | 724 |
| MsG0680031376.01.T01 | MTR_1g024175 | 78.802 | 434 | 92 | 0 | 1 | 434 | 1 | 434 | 0.0 | 724 |
| MsG0680031376.01.T01 | MTR_8g014590 | 77.951 | 449 | 96 | 2 | 1 | 446 | 1 | 449 | 0.0 | 713 |
| MsG0680031376.01.T01 | MTR_1g095650 | 95.965 | 347 | 13 | 1 | 102 | 447 | 1 | 347 | 0.0 | 688 |
| MsG0680031376.01.T01 | MTR_2g082730 | 70.682 | 440 | 112 | 2 | 1 | 438 | 1 | 425 | 0.0 | 639 |
| MsG0680031376.01.T01 | MTR_5g037350 | 66.383 | 470 | 121 | 1 | 3 | 435 | 13 | 482 | 0.0 | 629 |
| MsG0680031376.01.T01 | MTR_1g089520 | 69.406 | 438 | 116 | 3 | 4 | 440 | 5 | 425 | 0.0 | 623 |
| MsG0680031376.01.T01 | MTR_2g082665 | 65.682 | 440 | 108 | 2 | 1 | 438 | 1 | 399 | 0.0 | 581 |
| MsG0680031376.01.T01 | MTR_2g037420 | 63.053 | 452 | 121 | 4 | 1 | 447 | 1 | 411 | 0.0 | 558 |
| MsG0680031376.01.T01 | MTR_2g080210 | 64.368 | 435 | 119 | 4 | 1 | 432 | 1 | 402 | 0.0 | 549 |
| MsG0680031376.01.T01 | MTR_8g013910 | 63.029 | 449 | 131 | 5 | 1 | 433 | 1 | 430 | 0.0 | 546 |
| MsG0680031376.01.T01 | MTR_8g008740 | 78.154 | 325 | 70 | 1 | 1 | 324 | 1 | 325 | 0.0 | 538 |
| MsG0680031376.01.T01 | MTR_1g112460 | 64.094 | 298 | 65 | 4 | 155 | 446 | 1 | 262 | 4.06e-124 | 362 |
| MsG0680031376.01.T01 | MTR_1g495735 | 74.129 | 201 | 42 | 1 | 240 | 430 | 106 | 306 | 3.45e-99 | 299 |
| MsG0680031376.01.T01 | MTR_1g495735 | 71.698 | 53 | 15 | 0 | 21 | 73 | 2 | 54 | 4.83e-17 | 82.0 |
| MsG0680031376.01.T01 | MTR_6g080420 | 37.731 | 432 | 255 | 6 | 5 | 428 | 89 | 514 | 1.25e-96 | 300 |
| MsG0680031376.01.T01 | MTR_8g106700 | 37.731 | 432 | 259 | 6 | 4 | 429 | 49 | 476 | 1.50e-93 | 291 |
| MsG0680031376.01.T01 | MTR_8g106700 | 37.731 | 432 | 259 | 6 | 4 | 429 | 43 | 470 | 2.25e-93 | 290 |
| MsG0680031376.01.T01 | MTR_8g106700 | 37.731 | 432 | 259 | 6 | 4 | 429 | 70 | 497 | 4.16e-93 | 290 |
| MsG0680031376.01.T01 | MTR_8g087950 | 35.566 | 433 | 270 | 6 | 7 | 433 | 275 | 704 | 2.11e-90 | 289 |
| MsG0680031376.01.T01 | MTR_8g087950 | 35.566 | 433 | 270 | 6 | 7 | 433 | 348 | 777 | 1.13e-89 | 289 |
| MsG0680031376.01.T01 | MTR_1g101880 | 86.364 | 154 | 21 | 0 | 1 | 154 | 1 | 154 | 1.22e-89 | 273 |
| MsG0680031376.01.T01 | MTR_4g054970 | 55.372 | 242 | 79 | 4 | 193 | 431 | 50 | 265 | 2.09e-79 | 248 |
| MsG0680031376.01.T01 | MTR_4g054970 | 77.273 | 44 | 10 | 0 | 1 | 44 | 1 | 44 | 4.59e-13 | 69.7 |
| MsG0680031376.01.T01 | MTR_1g024165 | 81.884 | 138 | 25 | 0 | 8 | 145 | 12 | 149 | 2.00e-78 | 240 |
| MsG0680031376.01.T01 | MTR_8g014950 | 75.490 | 102 | 25 | 0 | 3 | 104 | 4 | 105 | 2.62e-47 | 158 |
| MsG0680031376.01.T01 | MTR_7g094460 | 30.227 | 440 | 243 | 14 | 3 | 429 | 59 | 447 | 1.71e-45 | 164 |
| MsG0680031376.01.T01 | MTR_7g098190 | 53.892 | 167 | 51 | 5 | 56 | 220 | 10 | 152 | 1.19e-42 | 149 |
| MsG0680031376.01.T01 | MTR_3g076660 | 30.631 | 444 | 247 | 15 | 3 | 429 | 88 | 487 | 5.34e-42 | 155 |
| MsG0680031376.01.T01 | MTR_2g021300 | 29.385 | 439 | 248 | 12 | 3 | 429 | 46 | 434 | 1.11e-41 | 153 |
| MsG0680031376.01.T01 | MTR_8g014960 | 62.195 | 82 | 31 | 0 | 213 | 294 | 2 | 83 | 2.91e-27 | 107 |
| MsG0680031376.01.T01 | MTR_3g097250 | 26.103 | 272 | 144 | 9 | 9 | 272 | 85 | 307 | 2.93e-12 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680031376.01.T01 | AT5G60390 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT5G60390 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT5G60390 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT1G07920 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT1G07940 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT1G07940 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT1G07940 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT1G07940 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT1G07930 | 95.516 | 446 | 20 | 0 | 1 | 446 | 1 | 446 | 0.0 | 890 |
| MsG0680031376.01.T01 | AT1G07930 | 98.824 | 255 | 3 | 0 | 1 | 255 | 1 | 255 | 0.0 | 530 |
| MsG0680031376.01.T01 | AT1G07930 | 90.517 | 116 | 11 | 0 | 331 | 446 | 254 | 369 | 1.84e-68 | 223 |
| MsG0680031376.01.T01 | AT1G18070 | 37.412 | 425 | 258 | 5 | 5 | 424 | 99 | 520 | 6.80e-94 | 293 |
| MsG0680031376.01.T01 | AT1G18070 | 37.412 | 425 | 258 | 5 | 5 | 424 | 99 | 520 | 6.80e-94 | 293 |
| MsG0680031376.01.T01 | AT1G18070 | 36.697 | 436 | 257 | 6 | 5 | 424 | 99 | 531 | 1.07e-90 | 285 |
| MsG0680031376.01.T01 | AT5G10630 | 35.765 | 425 | 265 | 5 | 7 | 426 | 239 | 660 | 1.89e-90 | 288 |
| MsG0680031376.01.T01 | AT5G10630 | 35.765 | 425 | 265 | 5 | 7 | 426 | 240 | 661 | 1.94e-90 | 288 |
| MsG0680031376.01.T01 | AT5G10630 | 35.765 | 425 | 265 | 5 | 7 | 426 | 240 | 661 | 1.94e-90 | 288 |
| MsG0680031376.01.T01 | AT5G10630 | 35.765 | 425 | 265 | 5 | 7 | 426 | 310 | 731 | 1.01e-89 | 288 |
| MsG0680031376.01.T01 | AT5G10630 | 35.765 | 425 | 265 | 5 | 7 | 426 | 315 | 736 | 1.14e-89 | 288 |
| MsG0680031376.01.T01 | AT1G35550 | 77.885 | 104 | 23 | 0 | 335 | 438 | 1 | 104 | 5.73e-54 | 176 |
| MsG0680031376.01.T01 | AT4G20360 | 30.594 | 438 | 255 | 10 | 3 | 429 | 75 | 474 | 1.30e-44 | 162 |
| MsG0680031376.01.T01 | AT4G20360 | 30.594 | 438 | 255 | 10 | 3 | 429 | 75 | 474 | 1.30e-44 | 162 |
| MsG0680031376.01.T01 | AT4G02930 | 29.977 | 437 | 249 | 13 | 3 | 429 | 63 | 452 | 2.06e-44 | 161 |
| MsG0680031376.01.T01 | AT2G31060 | 25.000 | 264 | 160 | 8 | 9 | 263 | 61 | 295 | 1.61e-12 | 70.1 |
| MsG0680031376.01.T01 | AT2G31060 | 24.615 | 260 | 162 | 7 | 9 | 263 | 61 | 291 | 2.26e-11 | 66.6 |
| MsG0680031376.01.T01 | AT5G08650 | 27.037 | 270 | 144 | 10 | 9 | 272 | 88 | 310 | 2.47e-11 | 66.2 |
| MsG0680031376.01.T01 | AT5G08650 | 27.037 | 270 | 144 | 10 | 9 | 272 | 88 | 310 | 2.74e-11 | 66.2 |
Find 152 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCGGTATGGTTGTGACTTT+TGG | 0.190241 | 6:+19360953 | MsG0680031376.01.T01:CDS |
| GGGCTTGTCTGTGGGTCTCT+TGG | 0.228126 | 6:-19360846 | None:intergenic |
| CTTCTTCTTGGCAGCAGCTT+TGG | 0.247525 | 6:-19361488 | None:intergenic |
| GGCTTGTCTGTGGGTCTCTT+GGG | 0.275199 | 6:-19360845 | None:intergenic |
| GTTCTGTAAGTTTCTAAAAC+TGG | 0.300028 | 6:-19361606 | None:intergenic |
| AAGATAACAAACTATTAAAA+AGG | 0.305342 | 6:-19361544 | None:intergenic |
| AACCATAGAGATAAAATAAA+AGG | 0.311270 | 6:-19361788 | None:intergenic |
| GGTGAGAGATCACTTCTTCT+TGG | 0.321976 | 6:-19361500 | None:intergenic |
| GCTCTCACTGAAGCTCTTCC+AGG | 0.343392 | 6:+19361025 | MsG0680031376.01.T01:CDS |
| TTGCAAGATGTTTACAAGAT+TGG | 0.346171 | 6:+19360881 | MsG0680031376.01.T01:CDS |
| GTCTCTTGGGCTCGTTGATC+TGG | 0.347889 | 6:-19360832 | None:intergenic |
| TTCATCAAGAACATGATTAC+TGG | 0.350652 | 6:+19360370 | MsG0680031376.01.T01:CDS |
| CCTCAGCTGAATCGAAATCT+AGG | 0.351267 | 6:-19359076 | None:intergenic |
| CATATCAACATTGTCGTCAT+TGG | 0.354281 | 6:+19360097 | MsG0680031376.01.T01:CDS |
| ACCTAGCCTTTGAGTACTTA+GGG | 0.356571 | 6:-19360646 | None:intergenic |
| AAGTTGGCAGCTTCCTTGGC+AGG | 0.360239 | 6:-19361130 | None:intergenic |
| GTTTACAAGATTGGTGGTAT+TGG | 0.363154 | 6:+19360890 | MsG0680031376.01.T01:CDS |
| GGTGAAGTTGGCAGCTTCCT+TGG | 0.365366 | 6:-19361134 | None:intergenic |
| ATCCCATTCGTTCCAATCTC+TGG | 0.368437 | 6:+19360731 | MsG0680031376.01.T01:CDS |
| ATCACCGTTCTTCAAGAACT+TGG | 0.370922 | 6:-19361305 | None:intergenic |
| GGCAGCAGCTTTGGTGACTT+TGG | 0.372842 | 6:-19361479 | None:intergenic |
| TAAAACTGGATAAATAAAAC+TGG | 0.376716 | 6:-19361592 | None:intergenic |
| GCTCTTCTTGCATTTACTCT+TGG | 0.389052 | 6:+19360487 | MsG0680031376.01.T01:CDS |
| ATCTTCACAAGCAGAATTGC+AGG | 0.403530 | 6:-19361869 | None:intergenic |
| TATTTGTCCTTGATTGTTTG+TGG | 0.413201 | 6:+19361822 | MsG0680031376.01.T01:three_prime_UTR |
| ACCAGATCGCCTGTCAATCT+TGG | 0.419719 | 6:-19361263 | None:intergenic |
| CACCCTGGACAGATTGGAAA+TGG | 0.422839 | 6:+19361178 | MsG0680031376.01.T01:CDS |
| TTCCTTGGCAGGGTCATCCT+TGG | 0.427055 | 6:-19361119 | None:intergenic |
| AAGCCTGAGGGGCTTGTCTG+TGG | 0.432212 | 6:-19360855 | None:intergenic |
| TCACCTTCAAAACCAGAGAT+TGG | 0.432839 | 6:-19360743 | None:intergenic |
| TCTGGAAAATCAACAACAAC+TGG | 0.436226 | 6:+19360130 | MsG0680031376.01.T01:CDS |
| AGCCTGAGGGGCTTGTCTGT+GGG | 0.440652 | 6:-19360854 | None:intergenic |
| ATGGGTTCTTGACAAACTTA+AGG | 0.442151 | 6:+19360249 | MsG0680031376.01.T01:CDS |
| CTCGACCACCATGGGCTTGG+TGG | 0.447012 | 6:-19361350 | None:intergenic |
| ATGAACCACCCTGGACAGAT+TGG | 0.457884 | 6:+19361172 | MsG0680031376.01.T01:CDS |
| CTGAATCGAAATCTAGGGTT+GGG | 0.471832 | 6:-19359070 | None:intergenic |
| TTTGGTGACTTTGGCTCCAG+TGG | 0.473646 | 6:-19361470 | None:intergenic |
| GGTGGTTCATGATGATAACT+TGG | 0.473987 | 6:-19361159 | None:intergenic |
| ACCAAGATTGACAGGCGATC+TGG | 0.474566 | 6:+19361262 | MsG0680031376.01.T01:CDS |
| CAAGATGTTTACAAGATTGG+TGG | 0.475647 | 6:+19360884 | MsG0680031376.01.T01:CDS |
| TGCACAGTCATTGATGCTCC+TGG | 0.479590 | 6:+19360337 | MsG0680031376.01.T01:CDS |
| GGTCTCGACCACCATGGGCT+TGG | 0.479606 | 6:-19361353 | None:intergenic |
| AGTTTCTTCCTACTTGAAGA+AGG | 0.482389 | 6:+19360688 | MsG0680031376.01.T01:CDS |
| TACCTAGCCTTTGAGTACTT+AGG | 0.483154 | 6:-19360647 | None:intergenic |
| TTGGTCCCTTGTACCAGTCC+AGG | 0.483784 | 6:-19360790 | None:intergenic |
| TAAGCACAGCACAATCAGCC+TGG | 0.484813 | 6:-19360399 | None:intergenic |
| TTCTTGAAGAACGGTGATGC+TGG | 0.487044 | 6:+19361310 | MsG0680031376.01.T01:CDS |
| CTTAAGGCTGAGCGTGAAAG+AGG | 0.490014 | 6:+19360265 | MsG0680031376.01.T01:CDS |
| GTCATTGGACATGTCGACTC+TGG | 0.490675 | 6:+19360112 | MsG0680031376.01.T01:CDS |
| ACCACGCTTGAGATCCTTCA+CGG | 0.497654 | 6:-19361080 | None:intergenic |
| TCCAAAAGTCACAACCATAC+CGG | 0.497778 | 6:-19360954 | None:intergenic |
| TATCCATTTCCAATCTGTCC+AGG | 0.498301 | 6:-19361181 | None:intergenic |
| CATCAAGGCTGTGGAGAAGA+AGG | 0.501366 | 6:+19361444 | MsG0680031376.01.T01:CDS |
| TCTTCCTACTTGAAGAAGGT+TGG | 0.503467 | 6:+19360692 | MsG0680031376.01.T01:CDS |
| CTTATCATTGACTCCACCAC+TGG | 0.506852 | 6:+19360418 | MsG0680031376.01.T01:CDS |
| CTTGTACCAGTCCAGGTTGG+TGG | 0.507402 | 6:-19360783 | None:intergenic |
| TCGACCACCATGGGCTTGGT+GGG | 0.509916 | 6:-19361349 | None:intergenic |
| AACTTGTTACCAAGATTGAC+AGG | 0.511236 | 6:+19361254 | MsG0680031376.01.T01:CDS |
| CACCAACCTGGACTGGTACA+AGG | 0.513101 | 6:+19360784 | MsG0680031376.01.T01:CDS |
| GTGAAGATTGTCTTTATGCA+AGG | 0.513643 | 6:+19361884 | MsG0680031376.01.T01:three_prime_UTR |
| TGATCTGGTCAAGAGCTTCA+AGG | 0.513652 | 6:-19360817 | None:intergenic |
| GACCCACAGACAAGCCCCTC+AGG | 0.515484 | 6:+19360852 | MsG0680031376.01.T01:CDS |
| TACAGAACTGGGTTCTTGAT+CGG | 0.517099 | 6:+19361621 | MsG0680031376.01.T01:three_prime_UTR |
| GATTGACAGGCGATCTGGTA+AGG | 0.518046 | 6:+19361267 | MsG0680031376.01.T01:CDS |
| GATTGAGAGGTCCACCAACC+TGG | 0.518650 | 6:+19360772 | MsG0680031376.01.T01:CDS |
| TTGGTGACTTTGGCTCCAGT+GGG | 0.520107 | 6:-19361469 | None:intergenic |
| ATCATTGACTCCACCACTGG+TGG | 0.521304 | 6:+19360421 | MsG0680031376.01.T01:CDS |
| AAACCAGAGATTGGAACGAA+TGG | 0.521400 | 6:-19360734 | None:intergenic |
| AACCAGAGATTGGAACGAAT+GGG | 0.522921 | 6:-19360733 | None:intergenic |
| CCGGTCTCAACACGTCCGAC+TGG | 0.523632 | 6:-19360920 | None:intergenic |
| TTGAATCCGACATTGTCTCC+TGG | 0.526013 | 6:-19361043 | None:intergenic |
| GATAACTTGGGAGGTGAAGT+TGG | 0.526407 | 6:-19361146 | None:intergenic |
| AGCGTTCATTCAAGTACGCA+TGG | 0.534658 | 6:+19360230 | MsG0680031376.01.T01:CDS |
| CCAAAAGTCACAACCATACC+GGG | 0.540748 | 6:-19360953 | None:intergenic |
| TGTTAAGAATGTTGCCGTGA+AGG | 0.543398 | 6:+19361066 | MsG0680031376.01.T01:CDS |
| CTCAGCACCACAAACAATCA+AGG | 0.545027 | 6:-19361829 | None:intergenic |
| ATGCAAGAAGAGCGTGCTCA+CGG | 0.549857 | 6:-19360477 | None:intergenic |
| GCTGAATCGAAATCTAGGGT+TGG | 0.550049 | 6:-19359071 | None:intergenic |
| GCAAAGGTCTCGACCACCAT+GGG | 0.551044 | 6:-19361358 | None:intergenic |
| CGGTATTGTGAAGCCCGGTA+TGG | 0.551104 | 6:+19360940 | MsG0680031376.01.T01:CDS |
| TCCCTTGTACCAGTCCAGGT+TGG | 0.552763 | 6:-19360786 | None:intergenic |
| GTAACCAACCTTCTTCAAGT+AGG | 0.553863 | 6:-19360696 | None:intergenic |
| ACTGGGTTCTTGATCGGCGA+TGG | 0.555494 | 6:+19361627 | MsG0680031376.01.T01:three_prime_UTR |
| TTGATGAAATCACGATGTCC+AGG | 0.556820 | 6:-19360355 | None:intergenic |
| ATCTTGCAATGGAAGCCTGA+GGG | 0.556985 | 6:-19360867 | None:intergenic |
| TGTTGCTGTTGGTGTCATCA+AGG | 0.557300 | 6:+19361429 | MsG0680031376.01.T01:CDS |
| CATACCGGGCTTCACAATAC+CGG | 0.558131 | 6:-19360939 | None:intergenic |
| AGAGGTCCACCAACCTGGAC+TGG | 0.561680 | 6:+19360777 | MsG0680031376.01.T01:CDS |
| TCACCGTTCTTCAAGAACTT+GGG | 0.564250 | 6:-19361304 | None:intergenic |
| AGTTGGCAGCTTCCTTGGCA+GGG | 0.564600 | 6:-19361129 | None:intergenic |
| TGATGCTGGTATCATTAAGA+TGG | 0.569011 | 6:+19361324 | MsG0680031376.01.T01:CDS |
| ACCAACCTGGACTGGTACAA+GGG | 0.569396 | 6:+19360785 | MsG0680031376.01.T01:CDS |
| AGCTTCAAAACCACCAGTGG+TGG | 0.571917 | 6:-19360431 | None:intergenic |
| GACTGTGCAGTAGTACTTGG+TGG | 0.578462 | 6:-19360323 | None:intergenic |
| CCAGTCGGACGTGTTGAGAC+CGG | 0.578770 | 6:+19360920 | MsG0680031376.01.T01:CDS |
| TGCAAGAAGAGCGTGCTCAC+GGG | 0.579779 | 6:-19360476 | None:intergenic |
| CATGATTACTGGAACCTCCC+AGG | 0.581850 | 6:+19360381 | MsG0680031376.01.T01:CDS |
| CTCAGCTGAATCGAAATCTA+GGG | 0.584632 | 6:-19359075 | None:intergenic |
| TCAAGAGCTTCAAGGAGAGT+TGG | 0.584894 | 6:-19360809 | None:intergenic |
| AACTTCAGTTGTCAAACCAG+TGG | 0.589445 | 6:-19360978 | None:intergenic |
| AATGACTGTGCAGTAGTACT+TGG | 0.591989 | 6:-19360326 | None:intergenic |
| GAAGCTGGTATCTCTAAGGA+TGG | 0.592030 | 6:+19360448 | MsG0680031376.01.T01:CDS |
| ATCTTGTAAACATCTTGCAA+TGG | 0.592677 | 6:-19360878 | None:intergenic |
| GAGGTGTGGCAATCGAGCAC+TGG | 0.595189 | 6:-19361208 | None:intergenic |
| TTTGCTGAATATCCTCCACT+TGG | 0.598309 | 6:+19361376 | MsG0680031376.01.T01:CDS |
| GTGGAGAAGAAGGATCCCAC+TGG | 0.600566 | 6:+19361454 | MsG0680031376.01.T01:CDS |
| GGTCACTTGATCTACAAGCT+AGG | 0.604596 | 6:+19360151 | MsG0680031376.01.T01:CDS |
| TTTCCACAAGGCAATATCGA+TGG | 0.606438 | 6:-19360293 | None:intergenic |
| AAGCACAGCACAATCAGCCT+GGG | 0.607202 | 6:-19360398 | None:intergenic |
| TGTTGGTGTCATCAAGGCTG+TGG | 0.608422 | 6:+19361435 | MsG0680031376.01.T01:CDS |
| CTCCAAGGATGACCCTGCCA+AGG | 0.609227 | 6:+19361117 | MsG0680031376.01.T01:CDS |
| GATGGTTCCCACCAAGCCCA+TGG | 0.611182 | 6:+19361342 | MsG0680031376.01.T01:CDS |
| GAGCCCAAGTTCTTGAAGAA+CGG | 0.613464 | 6:+19361301 | MsG0680031376.01.T01:CDS |
| GCGTTCATTCAAGTACGCAT+GGG | 0.615188 | 6:+19360231 | MsG0680031376.01.T01:CDS |
| ACTTCAGTTGTCAAACCAGT+GGG | 0.615673 | 6:-19360977 | None:intergenic |
| ATCCATTTCCAATCTGTCCA+GGG | 0.623703 | 6:-19361180 | None:intergenic |
| AAGGTGACAACATGATTGAG+AGG | 0.624581 | 6:+19360759 | MsG0680031376.01.T01:CDS |
| GAGACCGGTATTGTGAAGCC+CGG | 0.625104 | 6:+19360935 | MsG0680031376.01.T01:CDS |
| TCTTGCAATGGAAGCCTGAG+GGG | 0.631058 | 6:-19360866 | None:intergenic |
| AACAACTTCTGAAGTAACCA+TGG | 0.632974 | 6:-19361521 | None:intergenic |
| CCTAGATTTCGATTCAGCTG+AGG | 0.633164 | 6:+19359076 | MsG0680031376.01.T01:five_prime_UTR |
| ATCTGGTAAGGAGATTGAGA+AGG | 0.634092 | 6:+19361279 | MsG0680031376.01.T01:CDS |
| GCCGTGAAGGATCTCAAGCG+TGG | 0.634781 | 6:+19361079 | MsG0680031376.01.T01:CDS |
| GATGATCTGTTGTTGTAACA+AGG | 0.635291 | 6:+19360519 | MsG0680031376.01.T01:CDS |
| AGCCTTTGAGTACTTAGGGG+TGG | 0.635633 | 6:-19360642 | None:intergenic |
| CACAGCACAATCAGCCTGGG+AGG | 0.637532 | 6:-19360395 | None:intergenic |
| TGTGATCGAGAGATTCGAGA+AGG | 0.638590 | 6:+19360189 | MsG0680031376.01.T01:CDS |
| GTGGTTCATGATGATAACTT+GGG | 0.638665 | 6:-19361158 | None:intergenic |
| AGCAAAGGTCTCGACCACCA+TGG | 0.644138 | 6:-19361359 | None:intergenic |
| CCTAGCCTTTGAGTACTTAG+GGG | 0.644234 | 6:-19360645 | None:intergenic |
| CACTTGATCTACAAGCTAGG+AGG | 0.645428 | 6:+19360154 | MsG0680031376.01.T01:CDS |
| TTACCATCGATATTGCCTTG+TGG | 0.647445 | 6:+19360290 | MsG0680031376.01.T01:CDS |
| ATGCGTCAAACTGTTGCTGT+TGG | 0.649514 | 6:+19361418 | MsG0680031376.01.T01:CDS |
| GCTCTTCCAGGAGACAATGT+CGG | 0.651488 | 6:+19361037 | MsG0680031376.01.T01:CDS |
| AAACTTCACAGCAATGTGAG+AGG | 0.653594 | 6:-19361227 | None:intergenic |
| CATTTCCAATCTGTCCAGGG+TGG | 0.653893 | 6:-19361177 | None:intergenic |
| CATCTTGCAATGGAAGCCTG+AGG | 0.654491 | 6:-19360868 | None:intergenic |
| TACCACCCCTAAGTACTCAA+AGG | 0.654719 | 6:+19360640 | MsG0680031376.01.T01:CDS |
| ACAGCAAAACGTCCAAGTGG+AGG | 0.656142 | 6:-19361388 | None:intergenic |
| CCCCTAAGTACTCAAAGGCT+AGG | 0.656218 | 6:+19360645 | MsG0680031376.01.T01:CDS |
| GAAGAAGTGATCTCTCACCA+TGG | 0.659943 | 6:+19361504 | MsG0680031376.01.T01:exon |
| TAGGTACGATGAAATCGTGA+AGG | 0.668064 | 6:+19360664 | MsG0680031376.01.T01:CDS |
| ACCAGCTTCAAAACCACCAG+TGG | 0.669846 | 6:-19360434 | None:intergenic |
| TCACAGCAATGTGAGAGGTG+TGG | 0.670228 | 6:-19361222 | None:intergenic |
| AAGTGGAGGATATTCAGCAA+AGG | 0.671437 | 6:-19361374 | None:intergenic |
| GTTATCATCATGAACCACCC+TGG | 0.672736 | 6:+19361163 | MsG0680031376.01.T01:CDS |
| CTGACAGCAAAACGTCCAAG+TGG | 0.686824 | 6:-19361391 | None:intergenic |
| GGTGGTCTCAAATTTCCACA+AGG | 0.697133 | 6:-19360305 | None:intergenic |
| GGTATTGGAACTGTGCCAGT+CGG | 0.702004 | 6:+19360905 | MsG0680031376.01.T01:CDS |
| TATCACTCATTCTCTCTCAG+CGG | 0.718533 | 6:+19359038 | MsG0680031376.01.T01:five_prime_UTR |
| GGTTCCCACCAAGCCCATGG+TGG | 0.721829 | 6:+19361345 | MsG0680031376.01.T01:CDS |
| GTTCATGATGATAACTTGGG+AGG | 0.770098 | 6:-19361155 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTTTTTATTTGATATAAA+GGG | + | Chr6:19359528-19359547 | MsG0680031376.01.T01:intron | 10.0% |
| !!! | TTTCTTTTTATTTGATATAA+AGG | + | Chr6:19359527-19359546 | MsG0680031376.01.T01:intron | 10.0% |
| !! | AAGATAACAAACTATTAAAA+AGG | - | Chr6:19361547-19361566 | None:intergenic | 15.0% |
| !! | TATAATTTCAGATTAACAAT+CGG | - | Chr6:19359397-19359416 | None:intergenic | 15.0% |
| !! | TTAACAATTAAAACCAAAAA+CGG | - | Chr6:19361655-19361674 | None:intergenic | 15.0% |
| !!! | ATCTATTTTATGATTTTGTT+CGG | + | Chr6:19359174-19359193 | MsG0680031376.01.T01:intron | 15.0% |
| !!! | ATGTTTCTATTGTTTAATTA+TGG | + | Chr6:19359476-19359495 | MsG0680031376.01.T01:intron | 15.0% |
| !! | AACCATAGAGATAAAATAAA+AGG | - | Chr6:19361791-19361810 | None:intergenic | 20.0% |
| !! | AATAACAAAAAACTAAGACA+CGG | - | Chr6:19361572-19361591 | None:intergenic | 20.0% |
| !! | GATTATGTATGTTAAAAATC+TGG | + | Chr6:19359652-19359671 | MsG0680031376.01.T01:intron | 20.0% |
| !! | GTTGTTGAAATGATTTAATT+TGG | + | Chr6:19359431-19359450 | MsG0680031376.01.T01:intron | 20.0% |
| !! | TAAAACTGGATAAATAAAAC+TGG | - | Chr6:19361595-19361614 | None:intergenic | 20.0% |
| !! | TTAATACTGTGATTGTAATT+TGG | + | Chr6:19359504-19359523 | MsG0680031376.01.T01:intron | 20.0% |
| !!! | AACCTTTTATTTTATCTCTA+TGG | + | Chr6:19361786-19361805 | MsG0680031376.01.T01:three_prime_UTR | 20.0% |
| !!! | GGTTTATGATTTTTCATAAT+TGG | + | Chr6:19359624-19359643 | MsG0680031376.01.T01:intron | 20.0% |
| !!! | GTTTCAATTTTTTTTTCAGA+TGG | + | Chr6:19360613-19360632 | MsG0680031376.01.T01:intron | 20.0% |
| !!! | TAATTATTGATTAGATGAGT+TGG | + | Chr6:19359782-19359801 | MsG0680031376.01.T01:intron | 20.0% |
| !!! | TCTGGATTGAATTTTTTAAT+TGG | + | Chr6:19359670-19359689 | MsG0680031376.01.T01:intron | 20.0% |
| ! | TTTATCTAATAACAAGAGTC+TGG | + | Chr6:19359603-19359622 | MsG0680031376.01.T01:intron | 25.0% |
| !!! | ACTTTGATTTTCAGTTGTTA+TGG | + | Chr6:19359985-19360004 | MsG0680031376.01.T01:intron | 25.0% |
| !!! | TTTTAGAAACTTACAGAACT+GGG | + | Chr6:19361610-19361629 | MsG0680031376.01.T01:three_prime_UTR | 25.0% |
| ATCTTGTAAACATCTTGCAA+TGG | - | Chr6:19360881-19360900 | None:intergenic | 30.0% | |
| CAAACAAGATCTAATCAAAC+AGG | - | Chr6:19359737-19359756 | None:intergenic | 30.0% | |
| CTGTTTGATTAGATCTTGTT+TGG | + | Chr6:19359735-19359754 | MsG0680031376.01.T01:intron | 30.0% | |
| TATTTGTCCTTGATTGTTTG+TGG | + | Chr6:19361822-19361841 | MsG0680031376.01.T01:three_prime_UTR | 30.0% | |
| TTCATCAAGAACATGATTAC+TGG | + | Chr6:19360370-19360389 | MsG0680031376.01.T01:CDS | 30.0% | |
| TTGCAAGATGTTTACAAGAT+TGG | + | Chr6:19360881-19360900 | MsG0680031376.01.T01:CDS | 30.0% | |
| ! | TTGAGAACTTGATTTTCGAA+AGG | + | Chr6:19361680-19361699 | MsG0680031376.01.T01:three_prime_UTR | 30.0% |
| !! | GTTCTGTAAGTTTCTAAAAC+TGG | - | Chr6:19361609-19361628 | None:intergenic | 30.0% |
| !!! | GTTTTAGAAACTTACAGAAC+TGG | + | Chr6:19361609-19361628 | MsG0680031376.01.T01:three_prime_UTR | 30.0% |
| AGTTTCTTCCTACTTGAAGA+AGG | + | Chr6:19360688-19360707 | MsG0680031376.01.T01:CDS | 35.0% | |
| ATGGGTTCTTGACAAACTTA+AGG | + | Chr6:19360249-19360268 | MsG0680031376.01.T01:CDS | 35.0% | |
| CAAGATGTTTACAAGATTGG+TGG | + | Chr6:19360884-19360903 | MsG0680031376.01.T01:CDS | 35.0% | |
| CATATCAACATTGTCGTCAT+TGG | + | Chr6:19360097-19360116 | MsG0680031376.01.T01:CDS | 35.0% | |
| GATGATCTGTTGTTGTAACA+AGG | + | Chr6:19360519-19360538 | MsG0680031376.01.T01:CDS | 35.0% | |
| GTGAAGATTGTCTTTATGCA+AGG | + | Chr6:19361884-19361903 | MsG0680031376.01.T01:three_prime_UTR | 35.0% | |
| GTGGTTCATGATGATAACTT+GGG | - | Chr6:19361161-19361180 | None:intergenic | 35.0% | |
| TCTGGAAAATCAACAACAAC+TGG | + | Chr6:19360130-19360149 | MsG0680031376.01.T01:CDS | 35.0% | |
| TGATGCTGGTATCATTAAGA+TGG | + | Chr6:19361324-19361343 | MsG0680031376.01.T01:CDS | 35.0% | |
| ! | ACATCTTAATTTTGCTGCTG+AGG | + | Chr6:19361718-19361737 | MsG0680031376.01.T01:three_prime_UTR | 35.0% |
| ! | ATTTTCGAAAGGCAGCTAAA+AGG | + | Chr6:19361691-19361710 | MsG0680031376.01.T01:three_prime_UTR | 35.0% |
| ! | GTTTACAAGATTGGTGGTAT+TGG | + | Chr6:19360890-19360909 | MsG0680031376.01.T01:CDS | 35.0% |
| ! | TAGATCTTGTTTGGTTAAGC+TGG | + | Chr6:19359744-19359763 | MsG0680031376.01.T01:intron | 35.0% |
| ! | TTTTGTTGCATCTAACTCCA+AGG | + | Chr6:19361102-19361121 | MsG0680031376.01.T01:CDS | 35.0% |
| !! | AACAACTTCTGAAGTAACCA+TGG | - | Chr6:19361524-19361543 | None:intergenic | 35.0% |
| !! | AACTTGTTACCAAGATTGAC+AGG | + | Chr6:19361254-19361273 | MsG0680031376.01.T01:CDS | 35.0% |
| !! | GGTCTTCAAATTTTTGAGCT+GGG | + | Chr6:19359549-19359568 | MsG0680031376.01.T01:intron | 35.0% |
| !!! | ATCGCAGTTTTAAGACAACA+TGG | + | Chr6:19360060-19360079 | MsG0680031376.01.T01:intron | 35.0% |
| !!! | TCGCAGTTTTAAGACAACAT+GGG | + | Chr6:19360061-19360080 | MsG0680031376.01.T01:intron | 35.0% |
| !!! | TTTTGAAGCTGGTATCTCTA+AGG | + | Chr6:19360444-19360463 | MsG0680031376.01.T01:CDS | 35.0% |
| AAACCAGAGATTGGAACGAA+TGG | - | Chr6:19360737-19360756 | None:intergenic | 40.0% | |
| AAACTTCACAGCAATGTGAG+AGG | - | Chr6:19361230-19361249 | None:intergenic | 40.0% | |
| AACCAGAGATTGGAACGAAT+GGG | - | Chr6:19360736-19360755 | None:intergenic | 40.0% | |
| AACTTCAGTTGTCAAACCAG+TGG | - | Chr6:19360981-19361000 | None:intergenic | 40.0% | |
| AAGGTGACAACATGATTGAG+AGG | + | Chr6:19360759-19360778 | MsG0680031376.01.T01:CDS | 40.0% | |
| AAGTGGAGGATATTCAGCAA+AGG | - | Chr6:19361377-19361396 | None:intergenic | 40.0% | |
| AATGACTGTGCAGTAGTACT+TGG | - | Chr6:19360329-19360348 | None:intergenic | 40.0% | |
| ACTTCAGTTGTCAAACCAGT+GGG | - | Chr6:19360980-19360999 | None:intergenic | 40.0% | |
| ATCACCGTTCTTCAAGAACT+TGG | - | Chr6:19361308-19361327 | None:intergenic | 40.0% | |
| ATCCATTTCCAATCTGTCCA+GGG | - | Chr6:19361183-19361202 | None:intergenic | 40.0% | |
| ATCTGGTAAGGAGATTGAGA+AGG | + | Chr6:19361279-19361298 | MsG0680031376.01.T01:CDS | 40.0% | |
| ATCTTCACAAGCAGAATTGC+AGG | - | Chr6:19361872-19361891 | None:intergenic | 40.0% | |
| CTCAGCTGAATCGAAATCTA+GGG | - | Chr6:19359078-19359097 | None:intergenic | 40.0% | |
| GCTCTTCTTGCATTTACTCT+TGG | + | Chr6:19360487-19360506 | MsG0680031376.01.T01:CDS | 40.0% | |
| GGTGGTTCATGATGATAACT+TGG | - | Chr6:19361162-19361181 | None:intergenic | 40.0% | |
| GTAACCAACCTTCTTCAAGT+AGG | - | Chr6:19360699-19360718 | None:intergenic | 40.0% | |
| GTTCATGATGATAACTTGGG+AGG | - | Chr6:19361158-19361177 | None:intergenic | 40.0% | |
| GTTGAGTTACAGATTCTGAC+TGG | + | Chr6:19360591-19360610 | MsG0680031376.01.T01:intron | 40.0% | |
| TACAGAACTGGGTTCTTGAT+CGG | + | Chr6:19361621-19361640 | MsG0680031376.01.T01:three_prime_UTR | 40.0% | |
| TAGGTACGATGAAATCGTGA+AGG | + | Chr6:19360664-19360683 | MsG0680031376.01.T01:CDS | 40.0% | |
| TATCACTCATTCTCTCTCAG+CGG | + | Chr6:19359038-19359057 | MsG0680031376.01.T01:five_prime_UTR | 40.0% | |
| TATCCATTTCCAATCTGTCC+AGG | - | Chr6:19361184-19361203 | None:intergenic | 40.0% | |
| TCACCGTTCTTCAAGAACTT+GGG | - | Chr6:19361307-19361326 | None:intergenic | 40.0% | |
| TCACCTTCAAAACCAGAGAT+TGG | - | Chr6:19360746-19360765 | None:intergenic | 40.0% | |
| TCCAAAAGTCACAACCATAC+CGG | - | Chr6:19360957-19360976 | None:intergenic | 40.0% | |
| TCTTCCTACTTGAAGAAGGT+TGG | + | Chr6:19360692-19360711 | MsG0680031376.01.T01:CDS | 40.0% | |
| TGTTAAGAATGTTGCCGTGA+AGG | + | Chr6:19361066-19361085 | MsG0680031376.01.T01:CDS | 40.0% | |
| TTACCATCGATATTGCCTTG+TGG | + | Chr6:19360290-19360309 | MsG0680031376.01.T01:CDS | 40.0% | |
| TTGATGAAATCACGATGTCC+AGG | - | Chr6:19360358-19360377 | None:intergenic | 40.0% | |
| TTTCCACAAGGCAATATCGA+TGG | - | Chr6:19360296-19360315 | None:intergenic | 40.0% | |
| TTTGCTGAATATCCTCCACT+TGG | + | Chr6:19361376-19361395 | MsG0680031376.01.T01:CDS | 40.0% | |
| ! | ACCTAGCCTTTGAGTACTTA+GGG | - | Chr6:19360649-19360668 | None:intergenic | 40.0% |
| ! | CTGAATCGAAATCTAGGGTT+GGG | - | Chr6:19359073-19359092 | None:intergenic | 40.0% |
| ! | GAACGAATGGGATTTTGTCT+GGG | - | Chr6:19360724-19360743 | None:intergenic | 40.0% |
| ! | TACCTAGCCTTTGAGTACTT+AGG | - | Chr6:19360650-19360669 | None:intergenic | 40.0% |
| !! | GGGTCTTCAAATTTTTGAGC+TGG | + | Chr6:19359548-19359567 | MsG0680031376.01.T01:intron | 40.0% |
| !! | TGAGTTGGATGTTAGCTTGT+CGG | + | Chr6:19359797-19359816 | MsG0680031376.01.T01:intron | 40.0% |
| !!! | GTTCCAATCTCTGGTTTTGA+AGG | + | Chr6:19360740-19360759 | MsG0680031376.01.T01:CDS | 40.0% |
| AGCGTTCATTCAAGTACGCA+TGG | + | Chr6:19360230-19360249 | MsG0680031376.01.T01:CDS | 45.0% | |
| ATCCCATTCGTTCCAATCTC+TGG | + | Chr6:19360731-19360750 | MsG0680031376.01.T01:CDS | 45.0% | |
| ATCTTGCAATGGAAGCCTGA+GGG | - | Chr6:19360870-19360889 | None:intergenic | 45.0% | |
| ATGCGTCAAACTGTTGCTGT+TGG | + | Chr6:19361418-19361437 | MsG0680031376.01.T01:CDS | 45.0% | |
| CACTTGATCTACAAGCTAGG+AGG | + | Chr6:19360154-19360173 | MsG0680031376.01.T01:CDS | 45.0% | |
| CCAAAAGTCACAACCATACC+GGG | - | Chr6:19360956-19360975 | None:intergenic | 45.0% | |
| CCTAGATTTCGATTCAGCTG+AGG | + | Chr6:19359076-19359095 | MsG0680031376.01.T01:five_prime_UTR | 45.0% | |
| CCTCAGCTGAATCGAAATCT+AGG | - | Chr6:19359079-19359098 | None:intergenic | 45.0% | |
| CTCAGCACCACAAACAATCA+AGG | - | Chr6:19361832-19361851 | None:intergenic | 45.0% | |
| GAAGAAGTGATCTCTCACCA+TGG | + | Chr6:19361504-19361523 | MsG0680031376.01.T01:exon | 45.0% | |
| GAGCCCAAGTTCTTGAAGAA+CGG | + | Chr6:19361301-19361320 | MsG0680031376.01.T01:CDS | 45.0% | |
| GATAACTTGGGAGGTGAAGT+TGG | - | Chr6:19361149-19361168 | None:intergenic | 45.0% | |
| GCGTTCATTCAAGTACGCAT+GGG | + | Chr6:19360231-19360250 | MsG0680031376.01.T01:CDS | 45.0% | |
| GGTCACTTGATCTACAAGCT+AGG | + | Chr6:19360151-19360170 | MsG0680031376.01.T01:CDS | 45.0% | |
| GGTGAGAGATCACTTCTTCT+TGG | - | Chr6:19361503-19361522 | None:intergenic | 45.0% | |
| GGTGGTCTCAAATTTCCACA+AGG | - | Chr6:19360308-19360327 | None:intergenic | 45.0% | |
| GTTATCATCATGAACCACCC+TGG | + | Chr6:19361163-19361182 | MsG0680031376.01.T01:CDS | 45.0% | |
| TACCACCCCTAAGTACTCAA+AGG | + | Chr6:19360640-19360659 | MsG0680031376.01.T01:CDS | 45.0% | |
| TCAAGAGCTTCAAGGAGAGT+TGG | - | Chr6:19360812-19360831 | None:intergenic | 45.0% | |
| TGATCTGGTCAAGAGCTTCA+AGG | - | Chr6:19360820-19360839 | None:intergenic | 45.0% | |
| TGTGATCGAGAGATTCGAGA+AGG | + | Chr6:19360189-19360208 | MsG0680031376.01.T01:CDS | 45.0% | |
| TTCTTGAAGAACGGTGATGC+TGG | + | Chr6:19361310-19361329 | MsG0680031376.01.T01:CDS | 45.0% | |
| TTGAATCCGACATTGTCTCC+TGG | - | Chr6:19361046-19361065 | None:intergenic | 45.0% | |
| ! | CCTAGCCTTTGAGTACTTAG+GGG | - | Chr6:19360648-19360667 | None:intergenic | 45.0% |
| ! | GAAGCTGGTATCTCTAAGGA+TGG | + | Chr6:19360448-19360467 | MsG0680031376.01.T01:CDS | 45.0% |
| ! | GCTGAATCGAAATCTAGGGT+TGG | - | Chr6:19359074-19359093 | None:intergenic | 45.0% |
| ! | GGAACGAATGGGATTTTGTC+TGG | - | Chr6:19360725-19360744 | None:intergenic | 45.0% |
| !! | CTTATCATTGACTCCACCAC+TGG | + | Chr6:19360418-19360437 | MsG0680031376.01.T01:CDS | 45.0% |
| !! | TGTTGCTGTTGGTGTCATCA+AGG | + | Chr6:19361429-19361448 | MsG0680031376.01.T01:CDS | 45.0% |
| AAGCACAGCACAATCAGCCT+GGG | - | Chr6:19360401-19360420 | None:intergenic | 50.0% | |
| ACAGCAAAACGTCCAAGTGG+AGG | - | Chr6:19361391-19361410 | None:intergenic | 50.0% | |
| ACCAAGATTGACAGGCGATC+TGG | + | Chr6:19361262-19361281 | MsG0680031376.01.T01:CDS | 50.0% | |
| ACCACGCTTGAGATCCTTCA+CGG | - | Chr6:19361083-19361102 | None:intergenic | 50.0% | |
| ACCAGATCGCCTGTCAATCT+TGG | - | Chr6:19361266-19361285 | None:intergenic | 50.0% | |
| ACCAGCTTCAAAACCACCAG+TGG | - | Chr6:19360437-19360456 | None:intergenic | 50.0% | |
| AGCCTTTGAGTACTTAGGGG+TGG | - | Chr6:19360645-19360664 | None:intergenic | 50.0% | |
| AGCTTCAAAACCACCAGTGG+TGG | - | Chr6:19360434-19360453 | None:intergenic | 50.0% | |
| ATGAACCACCCTGGACAGAT+TGG | + | Chr6:19361172-19361191 | MsG0680031376.01.T01:CDS | 50.0% | |
| CACCCTGGACAGATTGGAAA+TGG | + | Chr6:19361178-19361197 | MsG0680031376.01.T01:CDS | 50.0% | |
| CATACCGGGCTTCACAATAC+CGG | - | Chr6:19360942-19360961 | None:intergenic | 50.0% | |
| CATCAAGGCTGTGGAGAAGA+AGG | + | Chr6:19361444-19361463 | MsG0680031376.01.T01:CDS | 50.0% | |
| CATCTTGCAATGGAAGCCTG+AGG | - | Chr6:19360871-19360890 | None:intergenic | 50.0% | |
| CATGATTACTGGAACCTCCC+AGG | + | Chr6:19360381-19360400 | MsG0680031376.01.T01:CDS | 50.0% | |
| CATTTCCAATCTGTCCAGGG+TGG | - | Chr6:19361180-19361199 | None:intergenic | 50.0% | |
| CCCCTAAGTACTCAAAGGCT+AGG | + | Chr6:19360645-19360664 | MsG0680031376.01.T01:CDS | 50.0% | |
| CTGACAGCAAAACGTCCAAG+TGG | - | Chr6:19361394-19361413 | None:intergenic | 50.0% | |
| CTTAAGGCTGAGCGTGAAAG+AGG | + | Chr6:19360265-19360284 | MsG0680031376.01.T01:CDS | 50.0% | |
| CTTCTTCTTGGCAGCAGCTT+TGG | - | Chr6:19361491-19361510 | None:intergenic | 50.0% | |
| GACTGTGCAGTAGTACTTGG+TGG | - | Chr6:19360326-19360345 | None:intergenic | 50.0% | |
| GATTGACAGGCGATCTGGTA+AGG | + | Chr6:19361267-19361286 | MsG0680031376.01.T01:CDS | 50.0% | |
| GCTCTTCCAGGAGACAATGT+CGG | + | Chr6:19361037-19361056 | MsG0680031376.01.T01:CDS | 50.0% | |
| TAAGCACAGCACAATCAGCC+TGG | - | Chr6:19360402-19360421 | None:intergenic | 50.0% | |
| TCACAGCAATGTGAGAGGTG+TGG | - | Chr6:19361225-19361244 | None:intergenic | 50.0% | |
| TCTTGCAATGGAAGCCTGAG+GGG | - | Chr6:19360869-19360888 | None:intergenic | 50.0% | |
| TGCACAGTCATTGATGCTCC+TGG | + | Chr6:19360337-19360356 | MsG0680031376.01.T01:CDS | 50.0% | |
| ! | ATCGGCGATGGTACCGTTTT+TGG | + | Chr6:19361639-19361658 | MsG0680031376.01.T01:three_prime_UTR | 50.0% |
| ! | ATGCAAGAAGAGCGTGCTCA+CGG | - | Chr6:19360480-19360499 | None:intergenic | 50.0% |
| ! | CCCGGTATGGTTGTGACTTT+TGG | + | Chr6:19360953-19360972 | MsG0680031376.01.T01:CDS | 50.0% |
| ! | GGTATTGGAACTGTGCCAGT+CGG | + | Chr6:19360905-19360924 | MsG0680031376.01.T01:CDS | 50.0% |
| ! | GTTGTGACTTTTGGACCCAC+TGG | + | Chr6:19360962-19360981 | MsG0680031376.01.T01:CDS | 50.0% |
| ! | TTGGTGACTTTGGCTCCAGT+GGG | - | Chr6:19361472-19361491 | None:intergenic | 50.0% |
| ! | TTTGGTGACTTTGGCTCCAG+TGG | - | Chr6:19361473-19361492 | None:intergenic | 50.0% |
| !! | ACCAACCTGGACTGGTACAA+GGG | + | Chr6:19360785-19360804 | MsG0680031376.01.T01:CDS | 50.0% |
| !! | ATCATTGACTCCACCACTGG+TGG | + | Chr6:19360421-19360440 | MsG0680031376.01.T01:CDS | 50.0% |
| !! | GTCATTGGACATGTCGACTC+TGG | + | Chr6:19360112-19360131 | MsG0680031376.01.T01:CDS | 50.0% |
| !! | TGTTGGTGTCATCAAGGCTG+TGG | + | Chr6:19361435-19361454 | MsG0680031376.01.T01:CDS | 50.0% |
| !!! | ACCACTGGTGGTTTTGAAGC+TGG | + | Chr6:19360433-19360452 | MsG0680031376.01.T01:CDS | 50.0% |
| AAGTTGGCAGCTTCCTTGGC+AGG | - | Chr6:19361133-19361152 | None:intergenic | 55.0% | |
| ACTGGGTTCTTGATCGGCGA+TGG | + | Chr6:19361627-19361646 | MsG0680031376.01.T01:three_prime_UTR | 55.0% | |
| AGCAAAGGTCTCGACCACCA+TGG | - | Chr6:19361362-19361381 | None:intergenic | 55.0% | |
| AGTTGGCAGCTTCCTTGGCA+GGG | - | Chr6:19361132-19361151 | None:intergenic | 55.0% | |
| CGGTATTGTGAAGCCCGGTA+TGG | + | Chr6:19360940-19360959 | MsG0680031376.01.T01:CDS | 55.0% | |
| GAGACCGGTATTGTGAAGCC+CGG | + | Chr6:19360935-19360954 | MsG0680031376.01.T01:CDS | 55.0% | |
| GATTGAGAGGTCCACCAACC+TGG | + | Chr6:19360772-19360791 | MsG0680031376.01.T01:CDS | 55.0% | |
| GCAAAGGTCTCGACCACCAT+GGG | - | Chr6:19361361-19361380 | None:intergenic | 55.0% | |
| GCTCTCACTGAAGCTCTTCC+AGG | + | Chr6:19361025-19361044 | MsG0680031376.01.T01:CDS | 55.0% | |
| GGCTTGTCTGTGGGTCTCTT+GGG | - | Chr6:19360848-19360867 | None:intergenic | 55.0% | |
| GGTGAAGTTGGCAGCTTCCT+TGG | - | Chr6:19361137-19361156 | None:intergenic | 55.0% | |
| GTCTCTTGGGCTCGTTGATC+TGG | - | Chr6:19360835-19360854 | None:intergenic | 55.0% | |
| GTGGAGAAGAAGGATCCCAC+TGG | + | Chr6:19361454-19361473 | MsG0680031376.01.T01:CDS | 55.0% | |
| TCCCTTGTACCAGTCCAGGT+TGG | - | Chr6:19360789-19360808 | None:intergenic | 55.0% | |
| TTCCTTGGCAGGGTCATCCT+TGG | - | Chr6:19361122-19361141 | None:intergenic | 55.0% | |
| TTGGTCCCTTGTACCAGTCC+AGG | - | Chr6:19360793-19360812 | None:intergenic | 55.0% | |
| ! | CTTGTACCAGTCCAGGTTGG+TGG | - | Chr6:19360786-19360805 | None:intergenic | 55.0% |
| ! | GGCAGCAGCTTTGGTGACTT+TGG | - | Chr6:19361482-19361501 | None:intergenic | 55.0% |
| ! | TGCAAGAAGAGCGTGCTCAC+GGG | - | Chr6:19360479-19360498 | None:intergenic | 55.0% |
| !! | CACCAACCTGGACTGGTACA+AGG | + | Chr6:19360784-19360803 | MsG0680031376.01.T01:CDS | 55.0% |
| AAGCCTGAGGGGCTTGTCTG+TGG | - | Chr6:19360858-19360877 | None:intergenic | 60.0% | |
| AGAGGTCCACCAACCTGGAC+TGG | + | Chr6:19360777-19360796 | MsG0680031376.01.T01:CDS | 60.0% | |
| AGCCTGAGGGGCTTGTCTGT+GGG | - | Chr6:19360857-19360876 | None:intergenic | 60.0% | |
| CACAGCACAATCAGCCTGGG+AGG | - | Chr6:19360398-19360417 | None:intergenic | 60.0% | |
| CCAGTCGGACGTGTTGAGAC+CGG | + | Chr6:19360920-19360939 | MsG0680031376.01.T01:CDS | 60.0% | |
| CTCCAAGGATGACCCTGCCA+AGG | + | Chr6:19361117-19361136 | MsG0680031376.01.T01:CDS | 60.0% | |
| GAGGTGTGGCAATCGAGCAC+TGG | - | Chr6:19361211-19361230 | None:intergenic | 60.0% | |
| GATGGTTCCCACCAAGCCCA+TGG | + | Chr6:19361342-19361361 | MsG0680031376.01.T01:CDS | 60.0% | |
| GCCGTGAAGGATCTCAAGCG+TGG | + | Chr6:19361079-19361098 | MsG0680031376.01.T01:CDS | 60.0% | |
| GGGCTTGTCTGTGGGTCTCT+TGG | - | Chr6:19360849-19360868 | None:intergenic | 60.0% | |
| ! | TCGACCACCATGGGCTTGGT+GGG | - | Chr6:19361352-19361371 | None:intergenic | 60.0% |
| CCGGTCTCAACACGTCCGAC+TGG | - | Chr6:19360923-19360942 | None:intergenic | 65.0% | |
| CTCGACCACCATGGGCTTGG+TGG | - | Chr6:19361353-19361372 | None:intergenic | 65.0% | |
| GACCCACAGACAAGCCCCTC+AGG | + | Chr6:19360852-19360871 | MsG0680031376.01.T01:CDS | 65.0% | |
| GGTCTCGACCACCATGGGCT+TGG | - | Chr6:19361356-19361375 | None:intergenic | 65.0% | |
| GGTTCCCACCAAGCCCATGG+TGG | + | Chr6:19361345-19361364 | MsG0680031376.01.T01:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 19359010 | 19361909 | 19359010 | ID=MsG0680031376.01;Name=MsG0680031376.01 |
| Chr6 | mRNA | 19359010 | 19361909 | 19359010 | ID=MsG0680031376.01.T01;Parent=MsG0680031376.01;Name=MsG0680031376.01.T01;_AED=0.42;_eAED=0.42;_QI=100|1|1|1|0.5|0.33|3|396|447 |
| Chr6 | exon | 19359010 | 19359097 | 19359010 | ID=MsG0680031376.01.T01:exon:12719;Parent=MsG0680031376.01.T01 |
| Chr6 | exon | 19360067 | 19360540 | 19360067 | ID=MsG0680031376.01.T01:exon:12720;Parent=MsG0680031376.01.T01 |
| Chr6 | exon | 19360632 | 19361909 | 19360632 | ID=MsG0680031376.01.T01:exon:12721;Parent=MsG0680031376.01.T01 |
| Chr6 | five_prime_UTR | 19359010 | 19359097 | 19359010 | ID=MsG0680031376.01.T01:five_prime_utr;Parent=MsG0680031376.01.T01 |
| Chr6 | five_prime_UTR | 19360067 | 19360078 | 19360067 | ID=MsG0680031376.01.T01:five_prime_utr;Parent=MsG0680031376.01.T01 |
| Chr6 | CDS | 19360079 | 19360540 | 19360079 | ID=MsG0680031376.01.T01:cds;Parent=MsG0680031376.01.T01 |
| Chr6 | CDS | 19360632 | 19361513 | 19360632 | ID=MsG0680031376.01.T01:cds;Parent=MsG0680031376.01.T01 |
| Chr6 | three_prime_UTR | 19361514 | 19361909 | 19361514 | ID=MsG0680031376.01.T01:three_prime_utr;Parent=MsG0680031376.01.T01 |
| Gene Sequence |
| Protein sequence |
