Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035344.01.T01 | XP_003620399.1 | 95.462 | 639 | 24 | 2 | 1 | 634 | 1 | 639 | 0 | 1223 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035344.01.T01 | G7KMK4 | 95.462 | 639 | 24 | 2 | 1 | 634 | 1 | 639 | 0.0 | 1223 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0180001548.01 | MsG0680035344.01 | -0.801447 | 8.967763e-49 | 4.283594e-46 |
| MsG0180003196.01 | MsG0680035344.01 | -0.810088 | 1.371235e-50 | 8.189960e-48 |
| MsG0180003600.01 | MsG0680035344.01 | 0.806711 | 7.205373e-50 | 3.938215e-47 |
| MsG0180003637.01 | MsG0680035344.01 | 0.807839 | 4.154725e-50 | 2.338374e-47 |
| MsG0180004121.01 | MsG0680035344.01 | 0.823708 | 1.197653e-53 | 1.039291e-50 |
| MsG0180004792.01 | MsG0680035344.01 | -0.818895 | 1.543972e-52 | 1.170469e-49 |
| MsG0180005127.01 | MsG0680035344.01 | 0.821219 | 4.534694e-53 | 3.667130e-50 |
| MsG0180005146.01 | MsG0680035344.01 | 0.819650 | 1.038914e-52 | 8.042210e-50 |
| MsG0180005741.01 | MsG0680035344.01 | 0.803446 | 3.472963e-49 | 1.745593e-46 |
| MsG0180005822.01 | MsG0680035344.01 | -0.802430 | 5.631262e-49 | 2.758000e-46 |
| MsG0180005898.01 | MsG0680035344.01 | -0.815412 | 9.370285e-52 | 6.455585e-49 |
| MsG0180006010.01 | MsG0680035344.01 | 0.803798 | 2.934910e-49 | 1.488587e-46 |
| MsG0180006028.01 | MsG0680035344.01 | -0.812051 | 5.150276e-51 | 3.240396e-48 |
| MsG0180006253.01 | MsG0680035344.01 | 0.847583 | 1.054729e-59 | 1.883496e-56 |
| MsG0280011271.01 | MsG0680035344.01 | 0.823128 | 1.636239e-53 | 1.396650e-50 |
| MsG0680032461.01 | MsG0680035344.01 | 0.806739 | 7.106928e-50 | 3.887316e-47 |
| MsG0680034238.01 | MsG0680035344.01 | 0.802234 | 6.180651e-49 | 3.011853e-46 |
| MsG0680035344.01 | MsG0780037052.01 | 0.819931 | 8.960447e-53 | 6.991208e-50 |
| MsG0680035344.01 | MsG0780038318.01 | 0.812930 | 3.307889e-51 | 2.130593e-48 |
| MsG0680035344.01 | MsG0780038399.01 | 0.807566 | 4.749025e-50 | 2.653803e-47 |
| MsG0680035344.01 | MsG0780040684.01 | -0.802876 | 4.556212e-49 | 2.256889e-46 |
| MsG0680035344.01 | MsG0780040847.01 | 0.815869 | 7.409159e-52 | 5.168807e-49 |
| MsG0680035344.01 | MsG0780041226.01 | 0.807878 | 4.075957e-50 | 2.296300e-47 |
| MsG0680035344.01 | MsG0780041361.01 | -0.819997 | 8.656608e-53 | 6.766468e-50 |
| MsG0680035344.01 | MsG0880041847.01 | -0.806091 | 9.734824e-50 | 5.237252e-47 |
| MsG0680035344.01 | MsG0880042642.01 | 0.801025 | 1.093597e-48 | 5.168917e-46 |
| MsG0680035344.01 | MsG0880043882.01 | 0.800240 | 1.581525e-48 | 7.326941e-46 |
| MsG0680035344.01 | MsG0880046408.01 | -0.808423 | 3.119253e-50 | 1.782880e-47 |
| MsG0680035344.01 | MsG0880046946.01 | 0.808079 | 3.694123e-50 | 2.092312e-47 |
| MsG0680035344.01 | MsG0880047312.01 | 0.818779 | 1.640223e-52 | 1.239392e-49 |
| MsG0480018692.01 | MsG0680035344.01 | 0.802497 | 5.454969e-49 | 2.676077e-46 |
| MsG0480019812.01 | MsG0680035344.01 | -0.839124 | 1.911884e-57 | 2.614700e-54 |
| MsG0480019817.01 | MsG0680035344.01 | 0.802315 | 5.945813e-49 | 2.903669e-46 |
| MsG0480019818.01 | MsG0680035344.01 | 0.815593 | 8.536401e-52 | 5.910755e-49 |
| MsG0480020448.01 | MsG0680035344.01 | 0.834424 | 3.022222e-56 | 3.585183e-53 |
| MsG0480020797.01 | MsG0680035344.01 | 0.802521 | 5.392453e-49 | 2.646980e-46 |
| MsG0480021226.01 | MsG0680035344.01 | 0.801324 | 9.500240e-49 | 4.523920e-46 |
| MsG0480022113.01 | MsG0680035344.01 | -0.801762 | 7.724880e-49 | 3.719357e-46 |
| MsG0480022244.01 | MsG0680035344.01 | -0.802460 | 5.551073e-49 | 2.720750e-46 |
| MsG0580025007.01 | MsG0680035344.01 | 0.811767 | 5.938282e-51 | 3.707833e-48 |
| MsG0580025024.01 | MsG0680035344.01 | 0.839704 | 1.351673e-57 | 1.881794e-54 |
| MsG0380015557.01 | MsG0680035344.01 | 0.826184 | 3.118863e-54 | 2.903853e-51 |
| MsG0380017200.01 | MsG0680035344.01 | 0.841048 | 6.017778e-58 | 8.734713e-55 |
| MsG0380017427.01 | MsG0680035344.01 | -0.823110 | 1.652097e-53 | 1.409480e-50 |
| MsG0380017901.01 | MsG0680035344.01 | 0.812513 | 4.082584e-51 | 2.600974e-48 |
| MsG0580030141.01 | MsG0680035344.01 | 0.807377 | 5.206570e-50 | 2.895434e-47 |
| MsG0280007677.01 | MsG0680035344.01 | 0.803392 | 3.563230e-49 | 1.788478e-46 |
| MsG0280007689.01 | MsG0680035344.01 | 0.833432 | 5.350011e-56 | 6.160217e-53 |
| MsG0280008452.01 | MsG0680035344.01 | 0.826157 | 3.164604e-54 | 2.944138e-51 |
| MsG0280009675.01 | MsG0680035344.01 | -0.806055 | 9.905616e-50 | 5.324333e-47 |
| MsG0280010270.01 | MsG0680035344.01 | 0.826290 | 2.942910e-54 | 2.748265e-51 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035344.01.T01 | MTR_6g082400 | 95.462 | 639 | 24 | 2 | 1 | 634 | 1 | 639 | 0.0 | 1223 |
| MsG0680035344.01.T01 | MTR_8g106245 | 47.867 | 633 | 246 | 27 | 22 | 634 | 20 | 588 | 3.84e-138 | 416 |
| MsG0680035344.01.T01 | MTR_1g109470 | 42.748 | 393 | 169 | 16 | 3 | 357 | 14 | 388 | 5.92e-71 | 244 |
| MsG0680035344.01.T01 | MTR_4g091530 | 44.898 | 245 | 99 | 12 | 58 | 285 | 28 | 253 | 3.99e-40 | 152 |
| MsG0680035344.01.T01 | MTR_2g461180 | 44.509 | 173 | 73 | 7 | 38 | 200 | 190 | 349 | 1.03e-29 | 126 |
| MsG0680035344.01.T01 | MTR_2g010160 | 50.926 | 108 | 48 | 2 | 58 | 165 | 43 | 145 | 6.70e-29 | 120 |
| MsG0680035344.01.T01 | MTR_4g116520 | 38.922 | 167 | 83 | 7 | 42 | 201 | 139 | 293 | 3.37e-26 | 115 |
| MsG0680035344.01.T01 | MTR_4g092850 | 46.429 | 112 | 53 | 3 | 58 | 167 | 38 | 144 | 1.08e-25 | 110 |
| MsG0680035344.01.T01 | MTR_6g033130 | 43.382 | 136 | 67 | 4 | 31 | 164 | 162 | 289 | 1.24e-24 | 110 |
| MsG0680035344.01.T01 | MTR_6g033130 | 43.382 | 136 | 67 | 4 | 31 | 164 | 162 | 289 | 1.73e-24 | 109 |
| MsG0680035344.01.T01 | MTR_2g005700 | 40.476 | 126 | 63 | 3 | 44 | 169 | 2 | 115 | 2.19e-22 | 99.0 |
| MsG0680035344.01.T01 | MTR_1g090020 | 46.729 | 107 | 50 | 3 | 58 | 164 | 193 | 292 | 2.92e-22 | 102 |
| MsG0680035344.01.T01 | MTR_5g067120 | 46.789 | 109 | 52 | 3 | 58 | 165 | 26 | 129 | 6.02e-22 | 98.6 |
| MsG0680035344.01.T01 | MTR_8g442400 | 37.255 | 153 | 87 | 4 | 59 | 210 | 179 | 323 | 5.23e-20 | 95.5 |
| MsG0680035344.01.T01 | MTR_4g128650 | 41.958 | 143 | 72 | 5 | 53 | 194 | 22 | 154 | 1.49e-19 | 94.0 |
| MsG0680035344.01.T01 | MTR_5g032960 | 46.000 | 100 | 53 | 1 | 55 | 154 | 12 | 110 | 2.12e-19 | 87.8 |
| MsG0680035344.01.T01 | MTR_5g488180 | 43.750 | 112 | 53 | 4 | 58 | 165 | 3 | 108 | 9.48e-19 | 85.9 |
| MsG0680035344.01.T01 | MTR_5g088090 | 43.750 | 112 | 53 | 4 | 58 | 165 | 3 | 108 | 9.48e-19 | 85.9 |
| MsG0680035344.01.T01 | MTR_5g088140 | 43.750 | 112 | 53 | 4 | 58 | 165 | 3 | 108 | 9.48e-19 | 85.9 |
| MsG0680035344.01.T01 | MTR_3g077030 | 38.843 | 121 | 66 | 3 | 55 | 175 | 5 | 117 | 1.32e-18 | 85.1 |
| MsG0680035344.01.T01 | MTR_5g088590 | 42.857 | 112 | 54 | 4 | 58 | 165 | 3 | 108 | 1.42e-18 | 85.9 |
| MsG0680035344.01.T01 | MTR_5g067160 | 35.374 | 147 | 80 | 4 | 56 | 193 | 40 | 180 | 4.60e-18 | 87.4 |
| MsG0680035344.01.T01 | MTR_5g088120 | 42.857 | 112 | 54 | 4 | 58 | 165 | 3 | 108 | 2.24e-17 | 81.3 |
| MsG0680035344.01.T01 | MTR_5g488190 | 42.857 | 112 | 54 | 4 | 58 | 165 | 3 | 108 | 2.24e-17 | 81.3 |
| MsG0680035344.01.T01 | MTR_5g088040 | 41.071 | 112 | 56 | 4 | 58 | 165 | 3 | 108 | 6.09e-17 | 80.9 |
| MsG0680035344.01.T01 | MTR_5g088620 | 41.071 | 112 | 56 | 4 | 58 | 165 | 3 | 108 | 1.56e-16 | 79.3 |
| MsG0680035344.01.T01 | MTR_4g105020 | 45.263 | 95 | 50 | 1 | 55 | 149 | 5 | 97 | 1.03e-15 | 75.9 |
| MsG0680035344.01.T01 | MTR_5g488200 | 43.564 | 101 | 47 | 4 | 69 | 165 | 168 | 262 | 2.89e-13 | 72.4 |
| MsG0680035344.01.T01 | MTR_5g067200 | 42.353 | 85 | 43 | 2 | 81 | 165 | 14 | 92 | 2.35e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0680035344.01.T01 | AT2G01190 | 38.248 | 719 | 311 | 28 | 18 | 634 | 33 | 720 | 2.35e-99 | 319 |
| MsG0680035344.01.T01 | AT3G18230 | 42.202 | 654 | 259 | 23 | 54 | 634 | 59 | 666 | 2.14e-97 | 313 |
| MsG0680035344.01.T01 | AT4G05150 | 43.333 | 150 | 61 | 5 | 58 | 193 | 58 | 197 | 5.93e-32 | 130 |
| MsG0680035344.01.T01 | AT1G25300 | 52.778 | 108 | 42 | 2 | 58 | 165 | 10 | 108 | 1.33e-28 | 115 |
| MsG0680035344.01.T01 | AT5G09620 | 50.435 | 115 | 50 | 2 | 58 | 169 | 39 | 149 | 2.17e-28 | 119 |
| MsG0680035344.01.T01 | AT5G09620 | 50.435 | 115 | 50 | 2 | 58 | 169 | 39 | 149 | 2.62e-28 | 119 |
| MsG0680035344.01.T01 | AT5G64430 | 44.521 | 146 | 69 | 3 | 58 | 199 | 44 | 181 | 4.81e-27 | 115 |
| MsG0680035344.01.T01 | AT5G57610 | 44.203 | 138 | 69 | 4 | 58 | 194 | 23 | 153 | 2.43e-26 | 115 |
| MsG0680035344.01.T01 | AT5G16220 | 37.288 | 177 | 73 | 3 | 57 | 198 | 29 | 202 | 2.35e-25 | 110 |
| MsG0680035344.01.T01 | AT1G16270 | 35.976 | 164 | 92 | 3 | 57 | 214 | 163 | 319 | 6.15e-24 | 108 |
| MsG0680035344.01.T01 | AT1G16270 | 35.976 | 164 | 92 | 3 | 57 | 214 | 163 | 319 | 6.15e-24 | 108 |
| MsG0680035344.01.T01 | AT1G16270 | 35.976 | 164 | 92 | 3 | 57 | 214 | 163 | 319 | 6.15e-24 | 108 |
| MsG0680035344.01.T01 | AT3G46920 | 38.125 | 160 | 89 | 4 | 58 | 214 | 74 | 226 | 1.47e-23 | 106 |
| MsG0680035344.01.T01 | AT3G46920 | 38.065 | 155 | 86 | 4 | 58 | 209 | 8 | 155 | 1.62e-23 | 106 |
| MsG0680035344.01.T01 | AT5G49920 | 39.597 | 149 | 77 | 3 | 58 | 206 | 9 | 144 | 1.77e-23 | 101 |
| MsG0680035344.01.T01 | AT1G04700 | 44.882 | 127 | 59 | 3 | 38 | 164 | 105 | 220 | 4.98e-23 | 105 |
| MsG0680035344.01.T01 | AT1G04700 | 44.882 | 127 | 59 | 3 | 38 | 164 | 105 | 220 | 4.98e-23 | 105 |
| MsG0680035344.01.T01 | AT1G04700 | 44.882 | 127 | 59 | 3 | 38 | 164 | 105 | 220 | 5.11e-23 | 104 |
| MsG0680035344.01.T01 | AT3G26510 | 46.789 | 109 | 49 | 3 | 59 | 164 | 10 | 112 | 1.02e-21 | 94.0 |
| MsG0680035344.01.T01 | AT3G26510 | 46.789 | 109 | 49 | 3 | 59 | 164 | 10 | 112 | 1.02e-21 | 94.0 |
| MsG0680035344.01.T01 | AT3G26510 | 46.789 | 109 | 49 | 3 | 59 | 164 | 10 | 112 | 1.02e-21 | 94.0 |
| MsG0680035344.01.T01 | AT3G26510 | 46.789 | 109 | 49 | 3 | 59 | 164 | 10 | 112 | 1.02e-21 | 94.0 |
| MsG0680035344.01.T01 | AT3G26510 | 46.789 | 109 | 49 | 3 | 59 | 164 | 10 | 112 | 1.02e-21 | 94.0 |
| MsG0680035344.01.T01 | AT3G26510 | 46.789 | 109 | 49 | 3 | 59 | 164 | 10 | 112 | 1.02e-21 | 94.0 |
| MsG0680035344.01.T01 | AT2G35050 | 41.667 | 108 | 55 | 2 | 58 | 165 | 176 | 275 | 5.86e-21 | 98.6 |
| MsG0680035344.01.T01 | AT2G35050 | 41.667 | 108 | 55 | 2 | 58 | 165 | 176 | 275 | 5.86e-21 | 98.6 |
| MsG0680035344.01.T01 | AT3G48240 | 50.000 | 88 | 42 | 1 | 59 | 146 | 14 | 99 | 7.88e-20 | 87.8 |
| MsG0680035344.01.T01 | AT3G24715 | 42.593 | 108 | 55 | 2 | 58 | 165 | 175 | 275 | 6.35e-19 | 92.0 |
| MsG0680035344.01.T01 | AT3G24715 | 42.593 | 108 | 55 | 2 | 58 | 165 | 175 | 275 | 6.35e-19 | 92.0 |
| MsG0680035344.01.T01 | AT3G24715 | 42.593 | 108 | 55 | 2 | 58 | 165 | 175 | 275 | 6.35e-19 | 92.0 |
| MsG0680035344.01.T01 | AT1G70640 | 47.253 | 91 | 47 | 1 | 59 | 149 | 8 | 97 | 3.49e-18 | 83.2 |
| MsG0680035344.01.T01 | AT5G63130 | 47.872 | 94 | 47 | 1 | 56 | 149 | 12 | 103 | 7.64e-15 | 73.9 |
| MsG0680035344.01.T01 | AT5G63130 | 47.872 | 94 | 47 | 1 | 56 | 149 | 12 | 103 | 7.64e-15 | 73.9 |
Find 146 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAGGGTTAGGTGCTTTATT+AGG | 0.180820 | 6:-102836015 | None:intergenic |
| ACTATATTCATAACCATAAT+TGG | 0.249686 | 6:-102836160 | None:intergenic |
| GTTGAATTTGATGCCACATT+AGG | 0.259994 | 6:-102836033 | None:intergenic |
| ACTTGGTAATATGATGAAAT+TGG | 0.265919 | 6:-102835811 | None:intergenic |
| CCTCCTAGTGGTACCAATTA+TGG | 0.272812 | 6:+102836147 | MsG0680035344.01.T01:CDS |
| TCAGATTATGGAGGACTAAT+TGG | 0.273034 | 6:+102834721 | MsG0680035344.01.T01:CDS |
| TGTTGTAATGTCATGTTATA+TGG | 0.292618 | 6:-102835919 | None:intergenic |
| CTATTAGAAGCTACCACATT+AGG | 0.295088 | 6:-102835955 | None:intergenic |
| TGTGGTGGTGGTTGTTGATT+TGG | 0.297334 | 6:-102835724 | None:intergenic |
| GGTGCTTTATTAGGGTAAAT+TGG | 0.314952 | 6:-102836006 | None:intergenic |
| CTAGGAGGAGCTACATTAAT+AGG | 0.319650 | 6:-102836132 | None:intergenic |
| AGCTTGCCACCGGGGACATT+AGG | 0.326160 | 6:-102833836 | None:intergenic |
| GGTTGCGGCGGTGGAGATAA+GGG | 0.328130 | 6:-102833693 | None:intergenic |
| GCGATCCACGACCACGATTC+TGG | 0.330991 | 6:-102833936 | None:intergenic |
| TTGAATTTGATGCCACATTA+GGG | 0.333465 | 6:-102836032 | None:intergenic |
| TAGGGTTAGGTGCTTTATTA+GGG | 0.347173 | 6:-102836014 | None:intergenic |
| GATGATGAGAGATCAGATTA+TGG | 0.354406 | 6:+102834709 | MsG0680035344.01.T01:CDS |
| CCAGTGTATGTAATGCCTAT+TGG | 0.357269 | 6:+102835883 | MsG0680035344.01.T01:CDS |
| TTCTTGATGATAAATAATCT+TGG | 0.357557 | 6:-102835632 | None:intergenic |
| CCATACCTTGTAACTGAATC+TGG | 0.358887 | 6:-102834814 | None:intergenic |
| AGGAATGGTGGTTGCGGCGG+TGG | 0.359388 | 6:-102833702 | None:intergenic |
| CCCATTGAAAGTGTGGTATC+TGG | 0.360704 | 6:-102834187 | None:intergenic |
| AGGCCAATAATACCACAAAA+TGG | 0.366926 | 6:+102835976 | MsG0680035344.01.T01:CDS |
| TTCTTCTTTGACTCCTTCAA+TGG | 0.369856 | 6:+102834483 | MsG0680035344.01.T01:CDS |
| ACTTGAAAACAATAACAATA+AGG | 0.375409 | 6:+102834384 | MsG0680035344.01.T01:CDS |
| CTAATGTGGTAGCTTCTAAT+AGG | 0.379802 | 6:+102835956 | MsG0680035344.01.T01:CDS |
| ACCAGATACCACACTTTCAA+TGG | 0.385542 | 6:+102834186 | MsG0680035344.01.T01:CDS |
| CAATTTCAACAACAATTTGT+TGG | 0.391396 | 6:+102836078 | MsG0680035344.01.T01:CDS |
| TGGTTGCGGCGGTGGAGATA+AGG | 0.395600 | 6:-102833694 | None:intergenic |
| GCTTGCCACCGGGGACATTA+GGG | 0.400464 | 6:-102833835 | None:intergenic |
| TGTTGTTGAAATTGATTTGA+AGG | 0.401843 | 6:-102836069 | None:intergenic |
| CATTATCTCCAGAAAATTGT+TGG | 0.402545 | 6:-102836296 | None:intergenic |
| ACAACAAAATAACGCTCCTT+TGG | 0.411048 | 6:+102836215 | MsG0680035344.01.T01:CDS |
| CGTGGTGGTGGCTGTGGTGG+TGG | 0.411827 | 6:-102833776 | None:intergenic |
| TTTGATGCCACATTAGGGTT+AGG | 0.422347 | 6:-102836027 | None:intergenic |
| TTCTTCTGCTAATGTGGCTA+TGG | 0.422627 | 6:+102834606 | MsG0680035344.01.T01:CDS |
| TATTAGAAGCTACCACATTA+GGG | 0.432131 | 6:-102835954 | None:intergenic |
| CTTTCGAGAACAATTCTTAA+CGG | 0.437708 | 6:+102833989 | MsG0680035344.01.T01:CDS |
| GTGGTGATGTTAATGTGAAT+AGG | 0.439737 | 6:+102834677 | MsG0680035344.01.T01:CDS |
| TGTTCTCTATATTTGTACCT+TGG | 0.440592 | 6:-102835660 | None:intergenic |
| AGCTGGTACTTGAGAGTAAA+GGG | 0.442320 | 6:-102834016 | None:intergenic |
| TCATCAACACGAACACGAAT+CGG | 0.442423 | 6:-102834517 | None:intergenic |
| AATGCTGCAGCAGCAGCTGC+AGG | 0.444841 | 6:-102836261 | None:intergenic |
| GAATTTGATTTGTGGATGTA+GGG | 0.454133 | 6:-102835789 | None:intergenic |
| AATTGTTGTTGTTGTGGTGG+TGG | 0.458277 | 6:-102835736 | None:intergenic |
| GTTGCGGCGGTGGAGATAAG+GGG | 0.466311 | 6:-102833692 | None:intergenic |
| CTTCACCAGATTCAGTTACA+AGG | 0.472765 | 6:+102834809 | MsG0680035344.01.T01:CDS |
| TGAATTTGTGATTGTTGTGA+TGG | 0.476153 | 6:-102835844 | None:intergenic |
| ATTATCTCCAGAAAATTGTT+GGG | 0.478016 | 6:-102836295 | None:intergenic |
| TGGTGATGTTAATGTGAATA+GGG | 0.479523 | 6:+102834678 | MsG0680035344.01.T01:CDS |
| TGAAATTGGAATTTGATTTG+TGG | 0.480296 | 6:-102835797 | None:intergenic |
| GGAATTTGATTTGTGGATGT+AGG | 0.489088 | 6:-102835790 | None:intergenic |
| TTGGATGATGTTAGGAGGAA+TGG | 0.492279 | 6:-102833717 | None:intergenic |
| CTGTGGTGGTGGCGATGATA+AGG | 0.492297 | 6:-102833765 | None:intergenic |
| ATTTGTGATTGTTGTGATGG+TGG | 0.494094 | 6:-102835841 | None:intergenic |
| GGTTGTTGTGTAGATCCAAT+AGG | 0.494757 | 6:-102835898 | None:intergenic |
| GATAAGGACTCGATCGACTC+AGG | 0.496681 | 6:-102833749 | None:intergenic |
| CATCTGATGTTACTGTAATG+AGG | 0.497110 | 6:-102834060 | None:intergenic |
| GTGATGGTGGAGGGTAAACT+TGG | 0.498230 | 6:-102835828 | None:intergenic |
| TGTTGATTTGGATCTGATTG+TGG | 0.498381 | 6:-102835712 | None:intergenic |
| TGAACAAATTGTTGTTGTTG+TGG | 0.501182 | 6:-102835742 | None:intergenic |
| GAAGCCATTGTCATTGCTGC+AGG | 0.505850 | 6:-102834637 | None:intergenic |
| CATGAGACGAAGCTTGCCAC+CGG | 0.506663 | 6:-102833846 | None:intergenic |
| AATTATGGTTATGAATATAG+TGG | 0.506746 | 6:+102836162 | MsG0680035344.01.T01:CDS |
| CCAGATACCACACTTTCAAT+GGG | 0.510170 | 6:+102834187 | MsG0680035344.01.T01:CDS |
| TGTTGTTTCTTCTGCTAATG+TGG | 0.511399 | 6:+102834600 | MsG0680035344.01.T01:CDS |
| CTTCGTCTCATGTGCAGCTA+CGG | 0.512697 | 6:+102833857 | MsG0680035344.01.T01:CDS |
| GATAAGTCTCTATGTTATGT+AGG | 0.513509 | 6:+102833905 | MsG0680035344.01.T01:CDS |
| TGACACCAGAATCGTGGTCG+TGG | 0.514574 | 6:+102833931 | MsG0680035344.01.T01:CDS |
| TTCTCGAAAGGCGCGAACAT+AGG | 0.519863 | 6:-102833976 | None:intergenic |
| GCAATGACAATGGCTTCAGC+TGG | 0.523790 | 6:+102834643 | MsG0680035344.01.T01:CDS |
| CTCACACCACCACTAGTCCT+TGG | 0.525251 | 6:-102834781 | None:intergenic |
| CGTCTCATGTGCAGCTACGG+AGG | 0.527353 | 6:+102833860 | MsG0680035344.01.T01:CDS |
| GGTGGCAAATTCTCCATTGA+AGG | 0.528503 | 6:-102834496 | None:intergenic |
| GTGGTGTATATAGTGAGTGT+TGG | 0.528585 | 6:-102835767 | None:intergenic |
| AGAGGTGTGTCAGATTCAGC+AGG | 0.528641 | 6:+102834280 | MsG0680035344.01.T01:CDS |
| TGGTGTATATAGTGAGTGTT+GGG | 0.532795 | 6:-102835766 | None:intergenic |
| CGTTAAGAATTGTTCTCGAA+AGG | 0.533418 | 6:-102833988 | None:intergenic |
| CAGCTGCAGGAGTCATGGAT+TGG | 0.535143 | 6:-102836248 | None:intergenic |
| TGTGATCGTGGTGGTGGCTG+TGG | 0.535147 | 6:-102833782 | None:intergenic |
| TGAACAAGCTGCAATGGTAA+AGG | 0.535312 | 6:-102834757 | None:intergenic |
| CAAGATCTTCATGAGGAAGC+TGG | 0.541665 | 6:-102834033 | None:intergenic |
| ATGAGACGAAGCTTGCCACC+GGG | 0.542054 | 6:-102833845 | None:intergenic |
| GATCGTGGTGGTGGCTGTGG+TGG | 0.546440 | 6:-102833779 | None:intergenic |
| TTATTGCTTGAATCACTAGC+AGG | 0.547203 | 6:-102834331 | None:intergenic |
| TAGTGATTCAAGCAATAACT+TGG | 0.550481 | 6:+102834336 | MsG0680035344.01.T01:CDS |
| GTTGATGCACTCAACAACTC+AGG | 0.551095 | 6:+102834247 | MsG0680035344.01.T01:CDS |
| GTCAAATAGAACTTCACAGC+CGG | 0.552582 | 6:+102836326 | MsG0680035344.01.T01:CDS |
| AGGAGGAATGGTGGTTGCGG+CGG | 0.553526 | 6:-102833705 | None:intergenic |
| GTTAGGAGGAATGGTGGTTG+CGG | 0.554956 | 6:-102833708 | None:intergenic |
| TGTGATTGTTGTGATGGTGG+AGG | 0.556066 | 6:-102835838 | None:intergenic |
| TCAGCTGGAGTTGTTACTAG+TGG | 0.557237 | 6:+102834658 | MsG0680035344.01.T01:CDS |
| GTGATTGTTGTGATGGTGGA+GGG | 0.558817 | 6:-102835837 | None:intergenic |
| TTAACATGTGATCGTGGTGG+TGG | 0.560719 | 6:-102833788 | None:intergenic |
| AGCAGCAGCTGCAGGAGTCA+TGG | 0.562009 | 6:-102836253 | None:intergenic |
| TTGATGCACTCAACAACTCA+GGG | 0.562066 | 6:+102834248 | MsG0680035344.01.T01:CDS |
| GTCTCATGTGCAGCTACGGA+GGG | 0.562228 | 6:+102833861 | MsG0680035344.01.T01:CDS |
| AAGCTGGTACTTGAGAGTAA+AGG | 0.565630 | 6:-102834017 | None:intergenic |
| TTTGATTTGTGGATGTAGGG+TGG | 0.566090 | 6:-102835786 | None:intergenic |
| GCTTTATTAGGGTAAATTGG+TGG | 0.566463 | 6:-102836003 | None:intergenic |
| CTTGGTTGAACAAGCTGCAA+TGG | 0.570036 | 6:-102834763 | None:intergenic |
| AATCTGGATCCGATTTATAC+CGG | 0.570252 | 6:-102836345 | None:intergenic |
| TTGATGAAAATGCTGGTAGC+AGG | 0.570446 | 6:+102834533 | MsG0680035344.01.T01:CDS |
| GACTCCTTCCCTAATGTCCC+CGG | 0.573625 | 6:+102833827 | MsG0680035344.01.T01:CDS |
| GAATATAGTGGTAATGTGGA+AGG | 0.576884 | 6:+102836174 | MsG0680035344.01.T01:CDS |
| CCAATAGGCATTACATACAC+TGG | 0.577687 | 6:-102835883 | None:intergenic |
| CTTGTAACTGAATCTGGTGA+AGG | 0.582351 | 6:-102834808 | None:intergenic |
| AAAGTTGTAATGAAGCAAGA+TGG | 0.585978 | 6:+102834571 | MsG0680035344.01.T01:CDS |
| ACAAATTGTTGTTGTTGTGG+TGG | 0.586159 | 6:-102835739 | None:intergenic |
| CTTGTTCAACCAAGGACTAG+TGG | 0.587169 | 6:+102834772 | MsG0680035344.01.T01:CDS |
| AAGTGATCCCATTGAAAGTG+TGG | 0.597227 | 6:-102834194 | None:intergenic |
| AACATGTAACTTGAATCTTG+AGG | 0.598939 | 6:-102835685 | None:intergenic |
| GCGGCGGTGGAGATAAGGGG+TGG | 0.603325 | 6:-102833689 | None:intergenic |
| TGATTTGGATCTGATTGTGG+TGG | 0.606936 | 6:-102835709 | None:intergenic |
| TAAAGCACCTAACCCTAATG+TGG | 0.611248 | 6:+102836020 | MsG0680035344.01.T01:CDS |
| GTTCGTGTTGATGAAAATGC+TGG | 0.615561 | 6:+102834526 | MsG0680035344.01.T01:CDS |
| TAATATAAATGACCCTAATG+TGG | 0.618458 | 6:+102835942 | MsG0680035344.01.T01:CDS |
| CATTGCAGCTTGTTCAACCA+AGG | 0.622441 | 6:+102834764 | MsG0680035344.01.T01:CDS |
| AACTCAGGGATTCTCTCAAG+AGG | 0.622550 | 6:+102834262 | MsG0680035344.01.T01:CDS |
| AATTCCTGCAGCAATGACAA+TGG | 0.625152 | 6:+102834633 | MsG0680035344.01.T01:CDS |
| GATGATGTTAGGAGGAATGG+TGG | 0.629860 | 6:-102833714 | None:intergenic |
| TTATGAATATAGTGGTAATG+TGG | 0.637729 | 6:+102836170 | MsG0680035344.01.T01:CDS |
| TGTGGTTGATGATGAAATTG+AGG | 0.641191 | 6:-102836105 | None:intergenic |
| CCATAATTGGTACCACTAGG+AGG | 0.645975 | 6:-102836147 | None:intergenic |
| TATCATCAAGAACAAGTCCA+AGG | 0.646741 | 6:+102835643 | MsG0680035344.01.T01:CDS |
| GTTTCATTAACATGTGATCG+TGG | 0.649887 | 6:-102833794 | None:intergenic |
| ACATACACTGGATATTGATG+TGG | 0.651890 | 6:-102835871 | None:intergenic |
| GCCACCGGGGACATTAGGGA+AGG | 0.653433 | 6:-102833831 | None:intergenic |
| GCTACATTAATAGGATGCTG+TGG | 0.658749 | 6:-102836123 | None:intergenic |
| ACAAGCTGCAATGGTAAAGG+CGG | 0.660310 | 6:-102834754 | None:intergenic |
| TCAACACGAACACGAATCGG+TGG | 0.660430 | 6:-102834514 | None:intergenic |
| TAACATAGAGACTTATCATG+AGG | 0.662427 | 6:-102833899 | None:intergenic |
| ATGATGCAAAATCTGAGACA+TGG | 0.663147 | 6:+102834221 | MsG0680035344.01.T01:CDS |
| GATGAGAGATCAGATTATGG+AGG | 0.672016 | 6:+102834712 | MsG0680035344.01.T01:CDS |
| ACACTGGATATTGATGTGGA+TGG | 0.672231 | 6:-102835867 | None:intergenic |
| GATTGGTACTGAGTAACCAA+AGG | 0.673524 | 6:-102836231 | None:intergenic |
| ATTAATGTAGCTCCTCCTAG+TGG | 0.674238 | 6:+102836135 | MsG0680035344.01.T01:CDS |
| AAGTCTCTATGTTATGTAGG+CGG | 0.674337 | 6:+102833908 | MsG0680035344.01.T01:CDS |
| TAACCATAATTGGTACCACT+AGG | 0.675449 | 6:-102836150 | None:intergenic |
| GTTCAACCAAGGACTAGTGG+TGG | 0.681531 | 6:+102834775 | MsG0680035344.01.T01:CDS |
| AGGCGGTGACACCAGAATCG+TGG | 0.682815 | 6:+102833925 | MsG0680035344.01.T01:CDS |
| TCCTTCCCTAATGTCCCCGG+TGG | 0.690061 | 6:+102833830 | MsG0680035344.01.T01:CDS |
| AGAGACTTATCATGAGGACG+CGG | 0.691797 | 6:-102833893 | None:intergenic |
| TGAGACGAAGCTTGCCACCG+GGG | 0.695282 | 6:-102833844 | None:intergenic |
| AGGTTATCAAGATCTTCATG+AGG | 0.698968 | 6:-102834040 | None:intergenic |
| TCATTAACATGTGATCGTGG+TGG | 0.712353 | 6:-102833791 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGATAAAAATTATGTTTAGT+AGG | + | Chr6:102834958-102834977 | MsG0680035344.01.T01:intron | 15.0% |
| !! | AAGATGTTTCAAAGTAATAA+TGG | + | Chr6:102835188-102835207 | MsG0680035344.01.T01:intron | 20.0% |
| !! | AATTATGGTTATGAATATAG+TGG | + | Chr6:102836162-102836181 | MsG0680035344.01.T01:CDS | 20.0% |
| !! | ACTATATTCATAACCATAAT+TGG | - | Chr6:102836163-102836182 | None:intergenic | 20.0% |
| !! | ACTTGAAAACAATAACAATA+AGG | + | Chr6:102834384-102834403 | MsG0680035344.01.T01:CDS | 20.0% |
| !!! | AAGTTCTTACAAGTTTTTTA+TGG | + | Chr6:102835560-102835579 | MsG0680035344.01.T01:intron | 20.0% |
| !!! | ACCATTTAAAATTTGTCTAT+AGG | + | Chr6:102835246-102835265 | MsG0680035344.01.T01:intron | 20.0% |
| !!! | ATTTAAAATTTGTCTATAGG+AGG | + | Chr6:102835249-102835268 | MsG0680035344.01.T01:intron | 20.0% |
| !!! | TCCTATAGACAAATTTTAAA+TGG | - | Chr6:102835250-102835269 | None:intergenic | 20.0% |
| !!! | TTCTTGATGATAAATAATCT+TGG | - | Chr6:102835635-102835654 | None:intergenic | 20.0% |
| ! | ATTATCTCCAGAAAATTGTT+GGG | - | Chr6:102836298-102836317 | None:intergenic | 25.0% |
| ! | CAATTTCAACAACAATTTGT+TGG | + | Chr6:102836078-102836097 | MsG0680035344.01.T01:CDS | 25.0% |
| ! | TAATATAAATGACCCTAATG+TGG | + | Chr6:102835942-102835961 | MsG0680035344.01.T01:CDS | 25.0% |
| ! | TAGTAACATAGATGTATTTG+TGG | - | Chr6:102835167-102835186 | None:intergenic | 25.0% |
| ! | TGTTGTAATGTCATGTTATA+TGG | - | Chr6:102835922-102835941 | None:intergenic | 25.0% |
| !! | ACTTGGTAATATGATGAAAT+TGG | - | Chr6:102835814-102835833 | None:intergenic | 25.0% |
| !! | TTATGAATATAGTGGTAATG+TGG | + | Chr6:102836170-102836189 | MsG0680035344.01.T01:CDS | 25.0% |
| !!! | GCAAACTTTTTTAGAATTAG+AGG | + | Chr6:102835034-102835053 | MsG0680035344.01.T01:intron | 25.0% |
| !!! | TGAAATTGGAATTTGATTTG+TGG | - | Chr6:102835800-102835819 | None:intergenic | 25.0% |
| !!! | TGTTGTTGAAATTGATTTGA+AGG | - | Chr6:102836072-102836091 | None:intergenic | 25.0% |
| AAAGTTGTAATGAAGCAAGA+TGG | + | Chr6:102834571-102834590 | MsG0680035344.01.T01:CDS | 30.0% | |
| AACATGTAACTTGAATCTTG+AGG | - | Chr6:102835688-102835707 | None:intergenic | 30.0% | |
| AGTAATAATGGTCAATGAGA+TGG | + | Chr6:102835200-102835219 | MsG0680035344.01.T01:intron | 30.0% | |
| CATTATCTCCAGAAAATTGT+TGG | - | Chr6:102836299-102836318 | None:intergenic | 30.0% | |
| CTAACTAATCTGACACATAT+TGG | - | Chr6:102835088-102835107 | None:intergenic | 30.0% | |
| CTTTCGAGAACAATTCTTAA+CGG | + | Chr6:102833989-102834008 | MsG0680035344.01.T01:CDS | 30.0% | |
| GATAAGTCTCTATGTTATGT+AGG | + | Chr6:102833905-102833924 | MsG0680035344.01.T01:CDS | 30.0% | |
| TAACATAGAGACTTATCATG+AGG | - | Chr6:102833902-102833921 | None:intergenic | 30.0% | |
| TAGTGATTCAAGCAATAACT+TGG | + | Chr6:102834336-102834355 | MsG0680035344.01.T01:CDS | 30.0% | |
| TATTAGAAGCTACCACATTA+GGG | - | Chr6:102835957-102835976 | None:intergenic | 30.0% | |
| TGAATTTGTGATTGTTGTGA+TGG | - | Chr6:102835847-102835866 | None:intergenic | 30.0% | |
| TGTTCTCTATATTTGTACCT+TGG | - | Chr6:102835663-102835682 | None:intergenic | 30.0% | |
| TTGAATTTGATGCCACATTA+GGG | - | Chr6:102836035-102836054 | None:intergenic | 30.0% | |
| ! | GTTCCATTTTGTGGTATTAT+TGG | - | Chr6:102835982-102836001 | None:intergenic | 30.0% |
| ! | TGAACAAATTGTTGTTGTTG+TGG | - | Chr6:102835745-102835764 | None:intergenic | 30.0% |
| ! | TGGTGATGTTAATGTGAATA+GGG | + | Chr6:102834678-102834697 | MsG0680035344.01.T01:CDS | 30.0% |
| !! | GAATTTGATTTGTGGATGTA+GGG | - | Chr6:102835792-102835811 | None:intergenic | 30.0% |
| !! | GATAAACTGTTTTCTAGCAT+AGG | - | Chr6:102834460-102834479 | None:intergenic | 30.0% |
| !! | TTTTCTAGCATAGGTGAATT+AGG | - | Chr6:102834451-102834470 | None:intergenic | 30.0% |
| !!! | AAGCAATAGTAGTTGCTTTT+TGG | - | Chr6:102835121-102835140 | None:intergenic | 30.0% |
| !!! | TAGTTTTGTTGGATGATGTT+AGG | - | Chr6:102833728-102833747 | None:intergenic | 30.0% |
| AAGTCTCTATGTTATGTAGG+CGG | + | Chr6:102833908-102833927 | MsG0680035344.01.T01:CDS | 35.0% | |
| AATTTGTCTATAGGAGGAGA+TGG | + | Chr6:102835255-102835274 | MsG0680035344.01.T01:intron | 35.0% | |
| ACAACAAAATAACGCTCCTT+TGG | + | Chr6:102836215-102836234 | MsG0680035344.01.T01:CDS | 35.0% | |
| ACATACACTGGATATTGATG+TGG | - | Chr6:102835874-102835893 | None:intergenic | 35.0% | |
| AGGCCAATAATACCACAAAA+TGG | + | Chr6:102835976-102835995 | MsG0680035344.01.T01:CDS | 35.0% | |
| AGGTTATCAAGATCTTCATG+AGG | - | Chr6:102834043-102834062 | None:intergenic | 35.0% | |
| ATTTGTGATTGTTGTGATGG+TGG | - | Chr6:102835844-102835863 | None:intergenic | 35.0% | |
| CAGATACGTCAAAATTGCTA+AGG | - | Chr6:102835480-102835499 | None:intergenic | 35.0% | |
| CATCTGATGTTACTGTAATG+AGG | - | Chr6:102834063-102834082 | None:intergenic | 35.0% | |
| CGTTAAGAATTGTTCTCGAA+AGG | - | Chr6:102833991-102834010 | None:intergenic | 35.0% | |
| CTAATGTGGTAGCTTCTAAT+AGG | + | Chr6:102835956-102835975 | MsG0680035344.01.T01:CDS | 35.0% | |
| CTATTAGAAGCTACCACATT+AGG | - | Chr6:102835958-102835977 | None:intergenic | 35.0% | |
| GATGATGAGAGATCAGATTA+TGG | + | Chr6:102834709-102834728 | MsG0680035344.01.T01:CDS | 35.0% | |
| GTTGAATTTGATGCCACATT+AGG | - | Chr6:102836036-102836055 | None:intergenic | 35.0% | |
| GTTTCATTAACATGTGATCG+TGG | - | Chr6:102833797-102833816 | None:intergenic | 35.0% | |
| TAACCATAATTGGTACCACT+AGG | - | Chr6:102836153-102836172 | None:intergenic | 35.0% | |
| TATCATCAAGAACAAGTCCA+AGG | + | Chr6:102835643-102835662 | MsG0680035344.01.T01:CDS | 35.0% | |
| TCAGATTATGGAGGACTAAT+TGG | + | Chr6:102834721-102834740 | MsG0680035344.01.T01:CDS | 35.0% | |
| TGGTGTATATAGTGAGTGTT+GGG | - | Chr6:102835769-102835788 | None:intergenic | 35.0% | |
| TTATTGCTTGAATCACTAGC+AGG | - | Chr6:102834334-102834353 | None:intergenic | 35.0% | |
| TTCTTCTTTGACTCCTTCAA+TGG | + | Chr6:102834483-102834502 | MsG0680035344.01.T01:CDS | 35.0% | |
| ! | ACAAATTGTTGTTGTTGTGG+TGG | - | Chr6:102835742-102835761 | None:intergenic | 35.0% |
| ! | ATGATGCAAAATCTGAGACA+TGG | + | Chr6:102834221-102834240 | MsG0680035344.01.T01:CDS | 35.0% |
| ! | GAATATAGTGGTAATGTGGA+AGG | + | Chr6:102836174-102836193 | MsG0680035344.01.T01:CDS | 35.0% |
| ! | GCTTTATTAGGGTAAATTGG+TGG | - | Chr6:102836006-102836025 | None:intergenic | 35.0% |
| ! | GGTGCTTTATTAGGGTAAAT+TGG | - | Chr6:102836009-102836028 | None:intergenic | 35.0% |
| ! | GTGGTGATGTTAATGTGAAT+AGG | + | Chr6:102834677-102834696 | MsG0680035344.01.T01:CDS | 35.0% |
| ! | GTGTAACATTGCTCTCTTTT+TGG | + | Chr6:102834847-102834866 | MsG0680035344.01.T01:intron | 35.0% |
| ! | TAGGGTTAGGTGCTTTATTA+GGG | - | Chr6:102836017-102836036 | None:intergenic | 35.0% |
| ! | TTAGGGTTAGGTGCTTTATT+AGG | - | Chr6:102836018-102836037 | None:intergenic | 35.0% |
| ! | TTTTGTTGGATGATGTTAGG+AGG | - | Chr6:102833725-102833744 | None:intergenic | 35.0% |
| !! | GGAATTTGATTTGTGGATGT+AGG | - | Chr6:102835793-102835812 | None:intergenic | 35.0% |
| !! | TGTGGTTGATGATGAAATTG+AGG | - | Chr6:102836108-102836127 | None:intergenic | 35.0% |
| !! | TGTTGATTTGGATCTGATTG+TGG | - | Chr6:102835715-102835734 | None:intergenic | 35.0% |
| !! | TGTTGTTTCTTCTGCTAATG+TGG | + | Chr6:102834600-102834619 | MsG0680035344.01.T01:CDS | 35.0% |
| AAGCTGGTACTTGAGAGTAA+AGG | - | Chr6:102834020-102834039 | None:intergenic | 40.0% | |
| AAGTGATCCCATTGAAAGTG+TGG | - | Chr6:102834197-102834216 | None:intergenic | 40.0% | |
| AATTAGAGGTCACTCGATGT+CGG | + | Chr6:102835048-102835067 | MsG0680035344.01.T01:intron | 40.0% | |
| AATTCCTGCAGCAATGACAA+TGG | + | Chr6:102834633-102834652 | MsG0680035344.01.T01:CDS | 40.0% | |
| ACACTGGATATTGATGTGGA+TGG | - | Chr6:102835870-102835889 | None:intergenic | 40.0% | |
| ACCAGATACCACACTTTCAA+TGG | + | Chr6:102834186-102834205 | MsG0680035344.01.T01:CDS | 40.0% | |
| AGCTGGTACTTGAGAGTAAA+GGG | - | Chr6:102834019-102834038 | None:intergenic | 40.0% | |
| ATGAGTCACGAAATCTGACA+CGG | - | Chr6:102835529-102835548 | None:intergenic | 40.0% | |
| ATTAATGTAGCTCCTCCTAG+TGG | + | Chr6:102836135-102836154 | MsG0680035344.01.T01:CDS | 40.0% | |
| CCAATAGGCATTACATACAC+TGG | - | Chr6:102835886-102835905 | None:intergenic | 40.0% | |
| CCAGATACCACACTTTCAAT+GGG | + | Chr6:102834187-102834206 | MsG0680035344.01.T01:CDS | 40.0% | |
| CCAGATTCAGTTACAAGGTA+TGG | + | Chr6:102834814-102834833 | MsG0680035344.01.T01:intron | 40.0% | |
| CCAGTGTATGTAATGCCTAT+TGG | + | Chr6:102835883-102835902 | MsG0680035344.01.T01:CDS | 40.0% | |
| CCATACCTTGTAACTGAATC+TGG | - | Chr6:102834817-102834836 | None:intergenic | 40.0% | |
| CTAGGAGGAGCTACATTAAT+AGG | - | Chr6:102836135-102836154 | None:intergenic | 40.0% | |
| CTTCACCAGATTCAGTTACA+AGG | + | Chr6:102834809-102834828 | MsG0680035344.01.T01:CDS | 40.0% | |
| CTTGTAACTGAATCTGGTGA+AGG | - | Chr6:102834811-102834830 | None:intergenic | 40.0% | |
| GATGAGAGATCAGATTATGG+AGG | + | Chr6:102834712-102834731 | MsG0680035344.01.T01:CDS | 40.0% | |
| GCTACATTAATAGGATGCTG+TGG | - | Chr6:102836126-102836145 | None:intergenic | 40.0% | |
| GGTTGTTGTGTAGATCCAAT+AGG | - | Chr6:102835901-102835920 | None:intergenic | 40.0% | |
| GTCAAATAGAACTTCACAGC+CGG | + | Chr6:102836326-102836345 | MsG0680035344.01.T01:CDS | 40.0% | |
| GTGGTGTATATAGTGAGTGT+TGG | - | Chr6:102835770-102835789 | None:intergenic | 40.0% | |
| TCATCAACACGAACACGAAT+CGG | - | Chr6:102834520-102834539 | None:intergenic | 40.0% | |
| TCATTAACATGTGATCGTGG+TGG | - | Chr6:102833794-102833813 | None:intergenic | 40.0% | |
| TGAACAAGCTGCAATGGTAA+AGG | - | Chr6:102834760-102834779 | None:intergenic | 40.0% | |
| TTCTTCTGCTAATGTGGCTA+TGG | + | Chr6:102834606-102834625 | MsG0680035344.01.T01:CDS | 40.0% | |
| TTGATGAAAATGCTGGTAGC+AGG | + | Chr6:102834533-102834552 | MsG0680035344.01.T01:CDS | 40.0% | |
| TTGATGCACTCAACAACTCA+GGG | + | Chr6:102834248-102834267 | MsG0680035344.01.T01:CDS | 40.0% | |
| TTGGATGATGTTAGGAGGAA+TGG | - | Chr6:102833720-102833739 | None:intergenic | 40.0% | |
| TTTGATGCCACATTAGGGTT+AGG | - | Chr6:102836030-102836049 | None:intergenic | 40.0% | |
| ! | AATTGTTGTTGTTGTGGTGG+TGG | - | Chr6:102835739-102835758 | None:intergenic | 40.0% |
| ! | ATTGGTGGAGTTCCATTTTG+TGG | - | Chr6:102835991-102836010 | None:intergenic | 40.0% |
| ! | GATGCTTCCCAACAATTTTC+TGG | + | Chr6:102836288-102836307 | MsG0680035344.01.T01:CDS | 40.0% |
| ! | GATTGGTACTGAGTAACCAA+AGG | - | Chr6:102836234-102836253 | None:intergenic | 40.0% |
| ! | GTTCGTGTTGATGAAAATGC+TGG | + | Chr6:102834526-102834545 | MsG0680035344.01.T01:CDS | 40.0% |
| ! | TAAAGCACCTAACCCTAATG+TGG | + | Chr6:102836020-102836039 | MsG0680035344.01.T01:CDS | 40.0% |
| ! | TGATTTGGATCTGATTGTGG+TGG | - | Chr6:102835712-102835731 | None:intergenic | 40.0% |
| !! | TTTGATTTGTGGATGTAGGG+TGG | - | Chr6:102835789-102835808 | None:intergenic | 40.0% |
| !!! | TCGACTCAGGATAGTTTTGT+TGG | - | Chr6:102833739-102833758 | None:intergenic | 40.0% |
| AACTCAGGGATTCTCTCAAG+AGG | + | Chr6:102834262-102834281 | MsG0680035344.01.T01:CDS | 45.0% | |
| ACAAGCTGCAATGGTAAAGG+CGG | - | Chr6:102834757-102834776 | None:intergenic | 45.0% | |
| AGAGACTTATCATGAGGACG+CGG | - | Chr6:102833896-102833915 | None:intergenic | 45.0% | |
| AGGAGGAGATGGATGAATGA+AGG | + | Chr6:102835266-102835285 | MsG0680035344.01.T01:intron | 45.0% | |
| CAAGATCTTCATGAGGAAGC+TGG | - | Chr6:102834036-102834055 | None:intergenic | 45.0% | |
| CCATAATTGGTACCACTAGG+AGG | - | Chr6:102836150-102836169 | None:intergenic | 45.0% | |
| CCTCCTAGTGGTACCAATTA+TGG | + | Chr6:102836147-102836166 | MsG0680035344.01.T01:CDS | 45.0% | |
| CTTGGTTGAACAAGCTGCAA+TGG | - | Chr6:102834766-102834785 | None:intergenic | 45.0% | |
| CTTGTTCAACCAAGGACTAG+TGG | + | Chr6:102834772-102834791 | MsG0680035344.01.T01:CDS | 45.0% | |
| GATGATGTTAGGAGGAATGG+TGG | - | Chr6:102833717-102833736 | None:intergenic | 45.0% | |
| GCTTTGCCACAACACATCTT+AGG | + | Chr6:102835137-102835156 | MsG0680035344.01.T01:intron | 45.0% | |
| GGTGGCAAATTCTCCATTGA+AGG | - | Chr6:102834499-102834518 | None:intergenic | 45.0% | |
| GTTGATGCACTCAACAACTC+AGG | + | Chr6:102834247-102834266 | MsG0680035344.01.T01:CDS | 45.0% | |
| TCAGCTGGAGTTGTTACTAG+TGG | + | Chr6:102834658-102834677 | MsG0680035344.01.T01:CDS | 45.0% | |
| TTAACATGTGATCGTGGTGG+TGG | - | Chr6:102833791-102833810 | None:intergenic | 45.0% | |
| ! | CATTGCAGCTTGTTCAACCA+AGG | + | Chr6:102834764-102834783 | MsG0680035344.01.T01:CDS | 45.0% |
| ! | CCCATTGAAAGTGTGGTATC+TGG | - | Chr6:102834190-102834209 | None:intergenic | 45.0% |
| !! | GTGATTGTTGTGATGGTGGA+GGG | - | Chr6:102835840-102835859 | None:intergenic | 45.0% |
| !! | TGTGATTGTTGTGATGGTGG+AGG | - | Chr6:102835841-102835860 | None:intergenic | 45.0% |
| !! | TGTGGTGGTGGTTGTTGATT+TGG | - | Chr6:102835727-102835746 | None:intergenic | 45.0% |
| !!! | AATAATATTCATATTTTTTT+TGG | + | Chr6:102835390-102835409 | MsG0680035344.01.T01:intron | 5.0% |
| CTTCGTCTCATGTGCAGCTA+CGG | + | Chr6:102833857-102833876 | MsG0680035344.01.T01:CDS | 50.0% | |
| GAAGCCATTGTCATTGCTGC+AGG | - | Chr6:102834640-102834659 | None:intergenic | 50.0% | |
| GCAATGACAATGGCTTCAGC+TGG | + | Chr6:102834643-102834662 | MsG0680035344.01.T01:CDS | 50.0% | |
| GGTGTGCCTAAGATGTGTTG+TGG | - | Chr6:102835146-102835165 | None:intergenic | 50.0% | |
| GTTAGGAGGAATGGTGGTTG+CGG | - | Chr6:102833711-102833730 | None:intergenic | 50.0% | |
| TCAACACGAACACGAATCGG+TGG | - | Chr6:102834517-102834536 | None:intergenic | 50.0% | |
| ! | AGAGGTGTGTCAGATTCAGC+AGG | + | Chr6:102834280-102834299 | MsG0680035344.01.T01:CDS | 50.0% |
| ! | GATAAGGACTCGATCGACTC+AGG | - | Chr6:102833752-102833771 | None:intergenic | 50.0% |
| ! | GTTCAACCAAGGACTAGTGG+TGG | + | Chr6:102834775-102834794 | MsG0680035344.01.T01:CDS | 50.0% |
| ! | TTCTCGAAAGGCGCGAACAT+AGG | - | Chr6:102833979-102833998 | None:intergenic | 50.0% |
| !! | GTGATGGTGGAGGGTAAACT+TGG | - | Chr6:102835831-102835850 | None:intergenic | 50.0% |
| ATGAGACGAAGCTTGCCACC+GGG | - | Chr6:102833848-102833867 | None:intergenic | 55.0% | |
| CAGCTGCAGGAGTCATGGAT+TGG | - | Chr6:102836251-102836270 | None:intergenic | 55.0% | |
| CATGAGACGAAGCTTGCCAC+CGG | - | Chr6:102833849-102833868 | None:intergenic | 55.0% | |
| CTCACACCACCACTAGTCCT+TGG | - | Chr6:102834784-102834803 | None:intergenic | 55.0% | |
| GACTCCTTCCCTAATGTCCC+CGG | + | Chr6:102833827-102833846 | MsG0680035344.01.T01:CDS | 55.0% | |
| GTCTCATGTGCAGCTACGGA+GGG | + | Chr6:102833861-102833880 | MsG0680035344.01.T01:CDS | 55.0% | |
| TGACACCAGAATCGTGGTCG+TGG | + | Chr6:102833931-102833950 | MsG0680035344.01.T01:CDS | 55.0% | |
| !! | CTGTGGTGGTGGCGATGATA+AGG | - | Chr6:102833768-102833787 | None:intergenic | 55.0% |
| AATGCTGCAGCAGCAGCTGC+AGG | - | Chr6:102836264-102836283 | None:intergenic | 60.0% | |
| AGCAGCAGCTGCAGGAGTCA+TGG | - | Chr6:102836256-102836275 | None:intergenic | 60.0% | |
| AGCTTGCCACCGGGGACATT+AGG | - | Chr6:102833839-102833858 | None:intergenic | 60.0% | |
| AGGAGGAATGGTGGTTGCGG+CGG | - | Chr6:102833708-102833727 | None:intergenic | 60.0% | |
| AGGCGGTGACACCAGAATCG+TGG | + | Chr6:102833925-102833944 | MsG0680035344.01.T01:CDS | 60.0% | |
| CGTCTCATGTGCAGCTACGG+AGG | + | Chr6:102833860-102833879 | MsG0680035344.01.T01:CDS | 60.0% | |
| GCGATCCACGACCACGATTC+TGG | - | Chr6:102833939-102833958 | None:intergenic | 60.0% | |
| GCTTGCCACCGGGGACATTA+GGG | - | Chr6:102833838-102833857 | None:intergenic | 60.0% | |
| GGTTGCGGCGGTGGAGATAA+GGG | - | Chr6:102833696-102833715 | None:intergenic | 60.0% | |
| GTTGCGGCGGTGGAGATAAG+GGG | - | Chr6:102833695-102833714 | None:intergenic | 60.0% | |
| TCCTTCCCTAATGTCCCCGG+TGG | + | Chr6:102833830-102833849 | MsG0680035344.01.T01:CDS | 60.0% | |
| TGAGACGAAGCTTGCCACCG+GGG | - | Chr6:102833847-102833866 | None:intergenic | 60.0% | |
| TGGTTGCGGCGGTGGAGATA+AGG | - | Chr6:102833697-102833716 | None:intergenic | 60.0% | |
| !! | TGTGATCGTGGTGGTGGCTG+TGG | - | Chr6:102833785-102833804 | None:intergenic | 60.0% |
| AGGAATGGTGGTTGCGGCGG+TGG | - | Chr6:102833705-102833724 | None:intergenic | 65.0% | |
| GCCACCGGGGACATTAGGGA+AGG | - | Chr6:102833834-102833853 | None:intergenic | 65.0% | |
| !! | GATCGTGGTGGTGGCTGTGG+TGG | - | Chr6:102833782-102833801 | None:intergenic | 65.0% |
| GCGGCGGTGGAGATAAGGGG+TGG | - | Chr6:102833692-102833711 | None:intergenic | 70.0% | |
| !! | CGTGGTGGTGGCTGTGGTGG+TGG | - | Chr6:102833779-102833798 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr6 | gene | 102833683 | 102836353 | 102833683 | ID=MsG0680035344.01;Name=MsG0680035344.01 |
| Chr6 | mRNA | 102833683 | 102836353 | 102833683 | ID=MsG0680035344.01.T01;Parent=MsG0680035344.01;Name=MsG0680035344.01.T01;_AED=0.03;_eAED=0.03;_QI=0|0|0|1|1|1|2|0|634 |
| Chr6 | exon | 102833683 | 102834830 | 102833683 | ID=MsG0680035344.01.T01:exon:21003;Parent=MsG0680035344.01.T01 |
| Chr6 | exon | 102835597 | 102836353 | 102835597 | ID=MsG0680035344.01.T01:exon:21004;Parent=MsG0680035344.01.T01 |
| Chr6 | CDS | 102833683 | 102834830 | 102833683 | ID=MsG0680035344.01.T01:cds;Parent=MsG0680035344.01.T01 |
| Chr6 | CDS | 102835597 | 102836353 | 102835597 | ID=MsG0680035344.01.T01:cds;Parent=MsG0680035344.01.T01 |
| Gene Sequence |
| Protein sequence |
