Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005741.01.T01 | XP_013469959.1 | 99.778 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 0 | 937 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005741.01.T01 | P33629 | 98 | 450 | 9 | 0 | 1 | 450 | 1 | 450 | 0 | 920 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005741.01.T01 | A0A072VQC8 | 99.778 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 0.0 | 937 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MsG0080048938.01 | MsG0180005741.01 | -0.802374 | 5.782394e-49 | 2.828063e-46 |
MsG0180000028.01 | MsG0180005741.01 | 0.818948 | 1.501656e-52 | 1.140110e-49 |
MsG0180000246.01 | MsG0180005741.01 | -0.801882 | 7.299685e-49 | 3.525651e-46 |
MsG0180000491.01 | MsG0180005741.01 | -0.802906 | 4.490941e-49 | 2.226336e-46 |
MsG0180000709.01 | MsG0180005741.01 | 0.812223 | 4.724597e-51 | 2.986746e-48 |
MsG0180000843.01 | MsG0180005741.01 | -0.812915 | 3.333469e-51 | 2.146217e-48 |
MsG0180001548.01 | MsG0180005741.01 | -0.803387 | 3.572259e-49 | 1.792741e-46 |
MsG0180002523.01 | MsG0180005741.01 | -0.815265 | 1.010005e-51 | 6.930435e-49 |
MsG0180003196.01 | MsG0180005741.01 | -0.826256 | 2.997101e-54 | 2.796222e-51 |
MsG0180003316.01 | MsG0180005741.01 | -0.811322 | 7.418858e-51 | 4.578023e-48 |
MsG0180004662.01 | MsG0180005741.01 | -0.802191 | 6.307231e-49 | 3.070088e-46 |
MsG0180004792.01 | MsG0180005741.01 | -0.808342 | 3.246373e-50 | 1.851612e-47 |
MsG0180005184.01 | MsG0180005741.01 | -0.820019 | 8.557915e-53 | 6.693557e-50 |
MsG0180005339.01 | MsG0180005741.01 | -0.838347 | 3.034929e-57 | 4.053486e-54 |
MsG0180005367.01 | MsG0180005741.01 | 0.854912 | 8.973211e-62 | 2.035608e-58 |
MsG0180005416.01 | MsG0180005741.01 | -0.810599 | 1.063906e-50 | 6.440693e-48 |
MsG0180005561.01 | MsG0180005741.01 | -0.809066 | 2.273221e-50 | 1.321498e-47 |
MsG0180005741.01 | MsG0180005898.01 | -0.848552 | 5.701130e-60 | 1.050072e-56 |
MsG0180005741.01 | MsG0180006010.01 | 0.802406 | 5.696648e-49 | 2.788326e-46 |
MsG0180005741.01 | MsG0180006183.01 | 0.819417 | 1.174094e-52 | 9.029770e-50 |
MsG0180005741.01 | MsG0180006253.01 | 0.835109 | 2.031264e-56 | 2.459344e-53 |
MsG0180005741.01 | MsG0280006319.01 | -0.804950 | 1.688570e-49 | 8.822649e-47 |
MsG0180005741.01 | MsG0280007423.01 | -0.840412 | 8.834040e-58 | 1.257382e-54 |
MsG0180005741.01 | MsG0280007689.01 | 0.848902 | 4.556728e-60 | 8.490070e-57 |
MsG0180005741.01 | MsG0280007851.01 | 0.810357 | 1.199841e-50 | 7.216967e-48 |
MsG0180005741.01 | MsG0280007874.01 | 0.841068 | 5.945621e-58 | 8.635048e-55 |
MsG0180005741.01 | MsG0280008072.01 | -0.807360 | 5.249616e-50 | 2.918019e-47 |
MsG0180005741.01 | MsG0280009435.01 | -0.853015 | 3.158134e-61 | 6.726823e-58 |
MsG0180005741.01 | MsG0280009436.01 | -0.848445 | 6.101670e-60 | 1.120068e-56 |
MsG0180005741.01 | MsG0280010425.01 | 0.809749 | 1.622636e-50 | 9.606481e-48 |
MsG0180005741.01 | MsG0280010998.01 | -0.804416 | 2.183264e-49 | 1.125025e-46 |
MsG0180005741.01 | MsG0280011020.01 | -0.839105 | 1.933325e-57 | 2.642640e-54 |
MsG0180005741.01 | MsG0280011110.01 | 0.812456 | 4.202295e-51 | 2.673305e-48 |
MsG0180005741.01 | MsG0280011218.01 | -0.824318 | 8.611827e-54 | 7.601356e-51 |
MsG0180005741.01 | MsG0280011271.01 | 0.845011 | 5.298511e-59 | 8.710065e-56 |
MsG0180005741.01 | MsG0280011362.01 | -0.832817 | 7.612024e-56 | 8.604508e-53 |
MsG0180005741.01 | MsG0380012222.01 | 0.806741 | 7.098798e-50 | 3.883086e-47 |
MsG0180005741.01 | MsG0380012782.01 | -0.805678 | 1.188528e-49 | 6.327053e-47 |
MsG0180005741.01 | MsG0380014144.01 | -0.805788 | 1.127325e-49 | 6.018121e-47 |
MsG0180005741.01 | MsG0380014936.01 | -0.813025 | 3.154371e-51 | 2.036886e-48 |
MsG0180005741.01 | MsG0380015393.01 | 0.867440 | 1.366878e-65 | 4.772755e-62 |
MsG0180005741.01 | MsG0380015496.01 | -0.824509 | 7.768900e-54 | 6.895384e-51 |
MsG0180005741.01 | MsG0380015547.01 | -0.835433 | 1.682830e-56 | 2.057538e-53 |
MsG0180005741.01 | MsG0380015656.01 | 0.828956 | 6.739065e-55 | 6.799612e-52 |
MsG0180005741.01 | MsG0380016542.01 | -0.807045 | 6.123119e-50 | 3.375770e-47 |
MsG0180005741.01 | MsG0380016545.01 | -0.808328 | 3.269132e-50 | 1.863932e-47 |
MsG0180005741.01 | MsG0380016997.01 | -0.858947 | 5.804523e-63 | 1.507245e-59 |
MsG0180005741.01 | MsG0380017033.01 | -0.823455 | 1.372759e-53 | 1.182516e-50 |
MsG0180005741.01 | MsG0380017666.01 | 0.816433 | 5.544570e-52 | 3.928028e-49 |
MsG0180005741.01 | MsG0480018111.01 | 0.836399 | 9.573572e-57 | 1.205054e-53 |
MsG0180005741.01 | MsG0480019573.01 | -0.861205 | 1.207926e-63 | 3.390510e-60 |
MsG0180005741.01 | MsG0480020448.01 | 0.836793 | 7.597105e-57 | 9.677054e-54 |
MsG0180005741.01 | MsG0480020473.01 | -0.849564 | 2.981981e-60 | 5.675677e-57 |
MsG0180005741.01 | MsG0480020797.01 | 0.811098 | 8.297763e-51 | 5.090509e-48 |
MsG0180005741.01 | MsG0480022162.01 | -0.818747 | 1.668384e-52 | 1.259530e-49 |
MsG0180005741.01 | MsG0480022664.01 | -0.836802 | 7.560147e-57 | 9.632197e-54 |
MsG0180005741.01 | MsG0480022918.01 | -0.820984 | 5.136666e-53 | 4.126998e-50 |
MsG0180005741.01 | MsG0480023454.01 | 0.818045 | 2.405668e-52 | 1.781243e-49 |
MsG0180005741.01 | MsG0480023466.01 | -0.820912 | 5.336555e-53 | 4.278682e-50 |
MsG0180005741.01 | MsG0580024763.01 | -0.813298 | 2.747268e-51 | 1.787229e-48 |
MsG0180005741.01 | MsG0580024764.01 | -0.836573 | 8.646320e-57 | 1.093951e-53 |
MsG0180005741.01 | MsG0580024872.01 | -0.809794 | 1.586388e-50 | 9.402940e-48 |
MsG0180005741.01 | MsG0580024976.01 | 0.801688 | 8.001419e-49 | 3.845251e-46 |
MsG0180005741.01 | MsG0580025413.01 | -0.849378 | 3.361220e-60 | 6.359904e-57 |
MsG0180005741.01 | MsG0580025644.01 | -0.801836 | 7.461803e-49 | 3.599569e-46 |
MsG0180005741.01 | MsG0580027899.01 | -0.857165 | 1.965879e-62 | 4.807855e-59 |
MsG0180005741.01 | MsG0580028118.01 | 0.826967 | 2.028375e-54 | 1.931523e-51 |
MsG0180005741.01 | MsG0580028495.01 | -0.835601 | 1.525634e-56 | 1.874720e-53 |
MsG0180005741.01 | MsG0580028890.01 | 0.815806 | 7.654804e-52 | 5.331164e-49 |
MsG0180005741.01 | MsG0580028925.01 | -0.800681 | 1.285932e-48 | 6.024528e-46 |
MsG0180005741.01 | MsG0580029389.01 | -0.825798 | 3.850234e-54 | 3.545842e-51 |
MsG0180005741.01 | MsG0580030141.01 | 0.806215 | 9.166257e-50 | 4.947212e-47 |
MsG0180005741.01 | MsG0680030464.01 | -0.832247 | 1.054268e-55 | 1.171590e-52 |
MsG0180005741.01 | MsG0680034759.01 | 0.844855 | 5.837150e-59 | 9.548072e-56 |
MsG0180005741.01 | MsG0680035344.01 | 0.803446 | 3.472963e-49 | 1.745593e-46 |
MsG0180005741.01 | MsG0680035664.01 | -0.854491 | 1.188057e-61 | 2.657923e-58 |
MsG0180005741.01 | MsG0680035665.01 | -0.865471 | 5.765108e-65 | 1.877850e-61 |
MsG0180005741.01 | MsG0780036048.01 | -0.809362 | 1.964548e-50 | 1.151159e-47 |
MsG0180005741.01 | MsG0780037052.01 | 0.905181 | 5.632023e-80 | 9.001538e-76 |
MsG0180005741.01 | MsG0780037946.01 | -0.820912 | 5.339041e-53 | 4.280584e-50 |
MsG0180005741.01 | MsG0780039986.01 | -0.800648 | 1.305862e-48 | 6.113030e-46 |
MsG0180005741.01 | MsG0780040155.01 | -0.811383 | 7.195902e-51 | 4.447753e-48 |
MsG0180005741.01 | MsG0780040670.01 | 0.807059 | 6.081921e-50 | 3.354253e-47 |
MsG0180005741.01 | MsG0780040914.01 | 0.820696 | 5.983943e-53 | 4.768605e-50 |
MsG0180005741.01 | MsG0780041385.01 | -0.866545 | 2.635779e-65 | 8.917462e-62 |
MsG0180005741.01 | MsG0780041778.01 | -0.808429 | 3.110650e-50 | 1.778244e-47 |
MsG0180005741.01 | MsG0780041823.01 | 0.838719 | 2.432907e-57 | 3.286884e-54 |
MsG0180005741.01 | MsG0880041850.01 | -0.804802 | 1.813581e-49 | 9.439660e-47 |
MsG0180005741.01 | MsG0880042000.01 | -0.822513 | 2.275139e-53 | 1.908482e-50 |
MsG0180005741.01 | MsG0880042256.01 | -0.820778 | 5.729487e-53 | 4.576419e-50 |
MsG0180005741.01 | MsG0880042690.01 | -0.817570 | 3.079037e-52 | 2.250390e-49 |
MsG0180005741.01 | MsG0880043235.01 | -0.806446 | 8.192823e-50 | 4.447809e-47 |
MsG0180005741.01 | MsG0880043238.01 | -0.818382 | 2.018744e-52 | 1.508892e-49 |
MsG0180005741.01 | MsG0880043495.01 | 0.829428 | 5.176545e-55 | 5.296562e-52 |
MsG0180005741.01 | MsG0880043870.01 | -0.806678 | 7.318979e-50 | 3.996834e-47 |
MsG0180005741.01 | MsG0880044105.01 | -0.828391 | 9.225730e-55 | 9.157978e-52 |
MsG0180005741.01 | MsG0880044834.01 | -0.809882 | 1.518598e-50 | 9.021614e-48 |
MsG0180005741.01 | MsG0880045285.01 | -0.814910 | 1.210940e-51 | 8.229072e-49 |
MsG0180005741.01 | MsG0880046324.01 | -0.848646 | 5.366843e-60 | 9.915123e-57 |
MsG0180005741.01 | MsG0880046408.01 | -0.874543 | 6.222259e-68 | 2.811495e-64 |
MsG0180005741.01 | MsG0880046740.01 | 0.804714 | 1.892254e-49 | 9.826447e-47 |
MsG0180005741.01 | MsG0880046946.01 | 0.800073 | 1.710148e-48 | 7.889481e-46 |
MsG0180005741.01 | MsG0880047312.01 | 0.802812 | 4.696773e-49 | 2.322907e-46 |
MsG0180005741.01 | MsG0880047414.01 | 0.802828 | 4.660910e-49 | 2.306163e-46 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005741.01.T01 | MTR_1g106005 | 99.778 | 450 | 1 | 0 | 1 | 450 | 1 | 450 | 0.0 | 937 |
MsG0180005741.01.T01 | MTR_3g110720 | 97.773 | 449 | 10 | 0 | 1 | 449 | 1 | 449 | 0.0 | 914 |
MsG0180005741.01.T01 | MTR_4g097830 | 97.118 | 451 | 12 | 1 | 1 | 450 | 1 | 451 | 0.0 | 910 |
MsG0180005741.01.T01 | MTR_8g085980 | 92.644 | 435 | 32 | 0 | 1 | 435 | 1 | 435 | 0.0 | 832 |
MsG0180005741.01.T01 | MTR_7g085800 | 91.196 | 443 | 38 | 1 | 1 | 443 | 1 | 442 | 0.0 | 827 |
MsG0180005741.01.T01 | MTR_6g029190 | 83.149 | 451 | 72 | 2 | 1 | 450 | 1 | 448 | 0.0 | 776 |
MsG0180005741.01.T01 | MTR_2g041670 | 72.829 | 449 | 117 | 2 | 1 | 449 | 1 | 444 | 0.0 | 653 |
MsG0180005741.01.T01 | MTR_2g041400 | 74.359 | 429 | 105 | 2 | 1 | 429 | 1 | 424 | 0.0 | 640 |
MsG0180005741.01.T01 | MTR_4g094535 | 41.705 | 434 | 243 | 2 | 1 | 434 | 1 | 424 | 4.73e-124 | 368 |
MsG0180005741.01.T01 | MTR_7g089120 | 42.105 | 437 | 237 | 4 | 1 | 434 | 1 | 424 | 1.41e-123 | 367 |
MsG0180005741.01.T01 | MTR_4g017630 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 1.77e-123 | 367 |
MsG0180005741.01.T01 | MTR_3g113970 | 40.961 | 437 | 244 | 3 | 1 | 434 | 1 | 426 | 2.23e-123 | 366 |
MsG0180005741.01.T01 | MTR_4g019110 | 42.105 | 437 | 237 | 3 | 1 | 434 | 1 | 424 | 3.83e-123 | 366 |
MsG0180005741.01.T01 | MTR_4g019090 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 9.64e-123 | 365 |
MsG0180005741.01.T01 | MTR_8g107250 | 41.244 | 434 | 246 | 2 | 1 | 434 | 1 | 425 | 1.25e-122 | 364 |
MsG0180005741.01.T01 | MTR_1g101130 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 1.66e-122 | 364 |
MsG0180005741.01.T01 | MTR_2g031310 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.43e-122 | 363 |
MsG0180005741.01.T01 | MTR_8g098360 | 39.545 | 440 | 256 | 2 | 1 | 440 | 1 | 430 | 4.59e-121 | 360 |
MsG0180005741.01.T01 | MTR_3g063410 | 98.052 | 154 | 3 | 0 | 252 | 405 | 24 | 177 | 4.54e-111 | 325 |
MsG0180005741.01.T01 | MTR_3g063410 | 97.826 | 138 | 3 | 0 | 268 | 405 | 1 | 138 | 3.09e-97 | 289 |
MsG0180005741.01.T01 | MTR_7g117050 | 31.390 | 446 | 283 | 9 | 2 | 433 | 3 | 439 | 3.00e-76 | 246 |
MsG0180005741.01.T01 | MTR_6g075280 | 46.875 | 96 | 32 | 1 | 355 | 450 | 608 | 684 | 3.34e-16 | 81.6 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MsG0180005741.01.T01 | AT1G04820 | 96.000 | 450 | 18 | 0 | 1 | 450 | 1 | 450 | 0.0 | 905 |
MsG0180005741.01.T01 | AT1G50010 | 96.000 | 450 | 18 | 0 | 1 | 450 | 1 | 450 | 0.0 | 905 |
MsG0180005741.01.T01 | AT4G14960 | 95.778 | 450 | 19 | 0 | 1 | 450 | 1 | 450 | 0.0 | 904 |
MsG0180005741.01.T01 | AT5G19780 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 838 |
MsG0180005741.01.T01 | AT5G19770 | 93.563 | 435 | 28 | 0 | 1 | 435 | 1 | 435 | 0.0 | 838 |
MsG0180005741.01.T01 | AT1G64740 | 90.115 | 435 | 43 | 0 | 1 | 435 | 1 | 435 | 0.0 | 812 |
MsG0180005741.01.T01 | AT4G14960 | 93.612 | 407 | 19 | 1 | 1 | 407 | 1 | 400 | 0.0 | 796 |
MsG0180005741.01.T01 | AT1G75780 | 41.475 | 434 | 245 | 2 | 1 | 434 | 1 | 425 | 2.35e-125 | 371 |
MsG0180005741.01.T01 | AT5G12250 | 41.648 | 437 | 239 | 4 | 1 | 434 | 1 | 424 | 7.80e-124 | 367 |
MsG0180005741.01.T01 | AT5G62700 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.65e-123 | 367 |
MsG0180005741.01.T01 | AT5G62690 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.65e-123 | 367 |
MsG0180005741.01.T01 | AT1G20010 | 41.014 | 434 | 247 | 2 | 1 | 434 | 1 | 425 | 5.93e-123 | 365 |
MsG0180005741.01.T01 | AT2G29550 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 9.66e-123 | 365 |
MsG0180005741.01.T01 | AT4G20890 | 41.475 | 434 | 244 | 2 | 1 | 434 | 1 | 424 | 1.50e-122 | 364 |
MsG0180005741.01.T01 | AT5G23860 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.06e-122 | 364 |
MsG0180005741.01.T01 | AT5G23860 | 41.244 | 434 | 245 | 2 | 1 | 434 | 1 | 424 | 2.06e-122 | 364 |
MsG0180005741.01.T01 | AT5G44340 | 41.244 | 434 | 245 | 3 | 1 | 434 | 1 | 424 | 1.81e-120 | 359 |
MsG0180005741.01.T01 | AT5G05620 | 32.063 | 446 | 280 | 9 | 2 | 433 | 3 | 439 | 1.79e-77 | 249 |
MsG0180005741.01.T01 | AT3G61650 | 31.614 | 446 | 282 | 9 | 2 | 433 | 3 | 439 | 3.85e-76 | 246 |
Find 160 sgRNAs with CRISPR-Local
Find 205 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CACTGATGTTGCTGTTCTTC+TGG | 0.208803 | 1:-95546168 | MsG0180005741.01.T01:CDS |
AGAAAGCATGAAATGGATTC+TGG | 0.259381 | 1:+95545852 | None:intergenic |
ATGAAATGGATTCTGGGATA+TGG | 0.263566 | 1:+95545859 | None:intergenic |
ACTGCTTCTTTGAGGTTTGA+TGG | 0.277274 | 1:-95545925 | MsG0180005741.01.T01:CDS |
GAGCGTCTGTCTGTTGATTA+TGG | 0.277497 | 1:-95546296 | MsG0180005741.01.T01:CDS |
GGAGGAACTGGTTCTGGTCT+TGG | 0.278416 | 1:-95546332 | MsG0180005741.01.T01:CDS |
TTCTTTGTGTGTTGTTCCTT+TGG | 0.303452 | 1:-95545255 | MsG0180005741.01.T01:three_prime_UTR |
CATCCTTGACTGCTTCTTTG+AGG | 0.310525 | 1:-95545933 | MsG0180005741.01.T01:CDS |
CATCGGTCAAGCCGGTATTC+AGG | 0.312386 | 1:-95547764 | MsG0180005741.01.T01:CDS |
TTTAATTATAAGAAATGCTT+TGG | 0.341707 | 1:+95544964 | None:intergenic |
CCTCTCCACCCACTCCCTCT+TGG | 0.347748 | 1:-95546195 | MsG0180005741.01.T01:CDS |
CAAGAGGACCATTCAGTTTG+TGG | 0.350369 | 1:-95545629 | MsG0180005741.01.T01:CDS |
CAGCCACCTACTGTTGTTCC+TGG | 0.350820 | 1:-95545568 | MsG0180005741.01.T01:CDS |
GCTTTCTCAGCAGATATAAC+TGG | 0.353641 | 1:+95545820 | None:intergenic |
GAAAAGTAGATAACCCGTTT+AGG | 0.361645 | 1:+95545177 | None:intergenic |
CCGGGAGGATCTTGCTGCTT+TGG | 0.366612 | 1:-95545377 | MsG0180005741.01.T01:CDS |
ATTAGAATATGTTGAATGAT+TGG | 0.375475 | 1:-95545102 | MsG0180005741.01.T01:three_prime_UTR |
TTCAGGTCGGAAATGCTTGC+TGG | 0.378485 | 1:-95547747 | MsG0180005741.01.T01:CDS |
CAGTCTTGTCGCTCGGCATT+TGG | 0.379031 | 1:+95546753 | None:intergenic |
GTTGGAGGAGGAACTGGTTC+TGG | 0.384483 | 1:-95546338 | MsG0180005741.01.T01:CDS |
TCGCTCGGCATTTGGCCATC+AGG | 0.386811 | 1:+95546761 | None:intergenic |
TTGCCACTGATGAGCTGCTC+AGG | 0.398345 | 1:+95546590 | None:intergenic |
AATGCTGTTGGAGGAGGAAC+TGG | 0.399457 | 1:-95546344 | MsG0180005741.01.T01:CDS |
CTGGTATGTGGGTGAGGGTA+TGG | 0.404210 | 1:-95545422 | MsG0180005741.01.T01:CDS |
ACGAAGAGAATGAATTGAAA+TGG | 0.405887 | 1:+95547834 | None:intergenic |
CCTTAACCGTCTTGTTTCTC+AGG | 0.406634 | 1:-95546081 | MsG0180005741.01.T01:intron |
GAAAAGGATTATGAAGAAGT+TGG | 0.409613 | 1:-95545355 | MsG0180005741.01.T01:CDS |
TTTGTGGATTGGTGCCCTAC+TGG | 0.413566 | 1:-95545613 | MsG0180005741.01.T01:CDS |
AGAGATCGTTGATCTGTGTT+TGG | 0.419543 | 1:-95546423 | MsG0180005741.01.T01:CDS |
AACACCTTCTTCAGCGAGAC+TGG | 0.421898 | 1:-95546707 | MsG0180005741.01.T01:CDS |
ATGGAAAGAAATCCAAGCTT+GGG | 0.425337 | 1:-95546277 | MsG0180005741.01.T01:CDS |
ACAAGTGTGGCTGAGGTGTT+TGG | 0.429571 | 1:-95545496 | MsG0180005741.01.T01:CDS |
CAACATATGTAAGAAACAAT+AGG | 0.429846 | 1:+95545214 | None:intergenic |
GTTGAATGATTGGATGTTTG+TGG | 0.431871 | 1:-95545092 | MsG0180005741.01.T01:three_prime_UTR |
TACTGTCTATCCCTCCCCTC+AGG | 0.434518 | 1:-95546252 | MsG0180005741.01.T01:CDS |
TACGAACGGTGGGTGGGTAA+TGG | 0.448762 | 1:+95548014 | None:intergenic |
TCAAGAGTCAAGACCTAAAC+GGG | 0.449832 | 1:-95545190 | MsG0180005741.01.T01:three_prime_UTR |
GGATCTTGCTGCTTTGGAAA+AGG | 0.449929 | 1:-95545371 | MsG0180005741.01.T01:CDS |
ACGGTTAAGGTTGGTGTAAG+TGG | 0.452971 | 1:+95546094 | None:intergenic |
GACAGCAGCATTCACATCCT+TGG | 0.453229 | 1:+95545666 | None:intergenic |
TGCATTTGTTCACTGGTATG+TGG | 0.454287 | 1:-95545434 | MsG0180005741.01.T01:CDS |
TTCTTCAGCGAGACTGGTGC+TGG | 0.455019 | 1:-95546701 | MsG0180005741.01.T01:CDS |
CATATGAAGAAAGCATGAAA+TGG | 0.460970 | 1:+95545845 | None:intergenic |
CACAAACTGAATGGTCCTCT+TGG | 0.463910 | 1:+95545630 | None:intergenic |
CCTGAGAAACAAGACGGTTA+AGG | 0.472342 | 1:+95546081 | None:intergenic |
CCAAGCGTGCATTTGTTCAC+TGG | 0.476016 | 1:-95545441 | MsG0180005741.01.T01:CDS |
TGTTCACTGGTATGTGGGTG+AGG | 0.477980 | 1:-95545428 | MsG0180005741.01.T01:CDS |
GAAGAAGTTGGTGCCGAGTC+TGG | 0.479857 | 1:-95545343 | MsG0180005741.01.T01:CDS |
TGAAATGGATTCTGGGATAT+GGG | 0.482192 | 1:+95545860 | None:intergenic |
ATGACCACGGGCGAAGTTGT+TGG | 0.484462 | 1:+95546556 | None:intergenic |
AAGCTATCTATGACATCTGC+AGG | 0.485194 | 1:-95546139 | MsG0180005741.01.T01:CDS |
ATCAAGAGTCAAGACCTAAA+CGG | 0.485727 | 1:-95545191 | MsG0180005741.01.T01:three_prime_UTR |
GAAAGCATGAAATGGATTCT+GGG | 0.486512 | 1:+95545853 | None:intergenic |
GTGGGTGAGGGTATGGAAGA+AGG | 0.492111 | 1:-95545415 | MsG0180005741.01.T01:CDS |
GATATGGGACCAAGTTGGTC+TGG | 0.495701 | 1:+95545875 | None:intergenic |
GTTGGTTTACGAACGGTGGG+TGG | 0.500920 | 1:+95548007 | None:intergenic |
AGCATTTCCGACCTGAATAC+CGG | 0.501769 | 1:+95547753 | None:intergenic |
GGACCATTCAGTTTGTGGAT+TGG | 0.503034 | 1:-95545624 | MsG0180005741.01.T01:CDS |
TATGGAAAGAAATCCAAGCT+TGG | 0.504088 | 1:-95546278 | MsG0180005741.01.T01:CDS |
CCAAAGCAGCAAGATCCTCC+CGG | 0.504543 | 1:+95545377 | None:intergenic |
TTGTGATAATTAACCATGGT+TGG | 0.508812 | 1:+95547989 | None:intergenic |
TCCTGGTGGTGACCTTGCTA+AGG | 0.511101 | 1:-95545551 | MsG0180005741.01.T01:CDS |
TGAGGGCGGTGATGAAGATA+TGG | 0.511219 | 1:-95545320 | MsG0180005741.01.T01:CDS |
CAGTGTGCTCCAAGAGGGAG+TGG | 0.513536 | 1:+95546186 | None:intergenic |
ACAGCAGCATTCACATCCTT+GGG | 0.514766 | 1:+95545667 | None:intergenic |
CCAGTGAACAAATGCACGCT+TGG | 0.525328 | 1:+95545441 | None:intergenic |
CACTTAGCCATCATAGATGA+TGG | 0.525506 | 1:+95545748 | None:intergenic |
CCCTCGCCATGGAAAGTACA+TGG | 0.526872 | 1:-95545722 | MsG0180005741.01.T01:CDS |
TTCTTATATGCACAGCCTGA+TGG | 0.528986 | 1:-95546776 | MsG0180005741.01.T01:intron |
AAACTCAACAAGTGTGGCTG+AGG | 0.529684 | 1:-95545503 | MsG0180005741.01.T01:CDS |
GTGGAGAGGACACTGTTGTA+TGG | 0.536266 | 1:+95546209 | None:intergenic |
AGCACCAGTCTCGCTGAAGA+AGG | 0.536901 | 1:+95546703 | None:intergenic |
GATAACTGCACTGGTCTCCA+AGG | 0.539021 | 1:-95546380 | MsG0180005741.01.T01:CDS |
AACCATGGTTGGTTTACGAA+CGG | 0.539516 | 1:+95548000 | None:intergenic |
CCGAGCGACAAGACTGTTGG+AGG | 0.543702 | 1:-95546746 | MsG0180005741.01.T01:CDS |
TGATGGCTCAAAAGCACTGT+TGG | 0.546926 | 1:+95545765 | None:intergenic |
GACTGAATTCCAGACCAACT+TGG | 0.549713 | 1:-95545884 | MsG0180005741.01.T01:CDS |
GCACCAATCCACAAACTGAA+TGG | 0.551570 | 1:+95545621 | None:intergenic |
GAGGTGGAAACCTGAGGGGA+GGG | 0.551933 | 1:+95546242 | None:intergenic |
ATAGACAGTAAACCCAAGCT+TGG | 0.556586 | 1:+95546265 | None:intergenic |
CGGTTAAGGTTGGTGTAAGT+GGG | 0.558069 | 1:+95546095 | None:intergenic |
CAACAGAGGTGGAAACCTGA+GGG | 0.558387 | 1:+95546237 | None:intergenic |
AGCAAGCCATGTACTTTCCA+TGG | 0.560681 | 1:+95545716 | None:intergenic |
TACTGTCTCGAACACGGCAT+CGG | 0.561154 | 1:-95547718 | MsG0180005741.01.T01:CDS |
TCAGGTCGGAAATGCTTGCT+GGG | 0.562273 | 1:-95547746 | MsG0180005741.01.T01:CDS |
CAAAGCAGCAAGATCCTCCC+GGG | 0.564402 | 1:+95545378 | None:intergenic |
GTTATCGATGAGGTGAGGAC+TGG | 0.564950 | 1:-95546635 | MsG0180005741.01.T01:CDS |
ATGCCGAGCGACAAGACTGT+TGG | 0.565365 | 1:-95546749 | MsG0180005741.01.T01:CDS |
GTTGGTGCCGAGTCTGGTGA+GGG | 0.565547 | 1:-95545337 | MsG0180005741.01.T01:CDS |
CCGAGGCGATGTTGTTCCCA+AGG | 0.566146 | 1:-95545683 | MsG0180005741.01.T01:CDS |
AGCGACAAGACTGTTGGAGG+TGG | 0.567132 | 1:-95546743 | MsG0180005741.01.T01:CDS |
TCAGTTCACATCGGTCAAGC+CGG | 0.567216 | 1:-95547772 | MsG0180005741.01.T01:CDS |
AAACCTCAAAGAAGCAGTCA+AGG | 0.571224 | 1:+95545930 | None:intergenic |
AAGCTTGCTGATAACTGCAC+TGG | 0.572122 | 1:-95546389 | MsG0180005741.01.T01:CDS |
TCAGATCTAGATCTAGAAGA+AGG | 0.572931 | 1:-95547897 | MsG0180005741.01.T01:five_prime_UTR |
CACTGATGAGCTGCTCAGGA+TGG | 0.573952 | 1:+95546594 | None:intergenic |
ACCACGGGCGAAGTTGTTGG+CGG | 0.576233 | 1:+95546559 | None:intergenic |
TGCCCTACTGGTTTCAAGTG+TGG | 0.577249 | 1:-95545601 | MsG0180005741.01.T01:CDS |
GCATTTGTTCACTGGTATGT+GGG | 0.578176 | 1:-95545433 | MsG0180005741.01.T01:CDS |
GCTGCTCAGGATGGAAGAGT+TGG | 0.579720 | 1:+95546603 | None:intergenic |
ATCACCGCCCTCACCAGACT+CGG | 0.580489 | 1:+95545330 | None:intergenic |
GCCATGTACTTTCCATGGCG+AGG | 0.586030 | 1:+95545721 | None:intergenic |
CATGAAAACAATTCATCCAA+AGG | 0.590994 | 1:+95545239 | None:intergenic |
TTGGTTTACGAACGGTGGGT+GGG | 0.592081 | 1:+95548008 | None:intergenic |
ACCTTAGCAAGGTCACCACC+AGG | 0.592703 | 1:+95545550 | None:intergenic |
GTTCACTGGTATGTGGGTGA+GGG | 0.594621 | 1:-95545427 | MsG0180005741.01.T01:CDS |
CCATGTACTTTCCATGGCGA+GGG | 0.595056 | 1:+95545722 | None:intergenic |
ATGGTTGGTTTACGAACGGT+GGG | 0.597218 | 1:+95548004 | None:intergenic |
AGTTGGTGCCGAGTCTGGTG+AGG | 0.599254 | 1:-95545338 | MsG0180005741.01.T01:CDS |
CATGGTTGGTTTACGAACGG+TGG | 0.599944 | 1:+95548003 | None:intergenic |
GTGCTCCAAGAGGGAGTGGG+TGG | 0.600125 | 1:+95546190 | None:intergenic |
AGTGGGACGCTCAATGTCGA+GGG | 0.600615 | 1:+95546112 | None:intergenic |
GCCGCCAACAACTTCGCCCG+TGG | 0.600730 | 1:-95546560 | MsG0180005741.01.T01:CDS |
AAGTGGGACGCTCAATGTCG+AGG | 0.610089 | 1:+95546111 | None:intergenic |
GATCTAGATCTGATTATGAG+AGG | 0.611018 | 1:+95547907 | None:intergenic |
CATCCTGAGCAGCTCATCAG+TGG | 0.614786 | 1:-95546593 | MsG0180005741.01.T01:CDS |
ACAACAGAGGTGGAAACCTG+AGG | 0.615914 | 1:+95546236 | None:intergenic |
TATCAGCAAGCTTTCTGATG+CGG | 0.616085 | 1:+95546399 | None:intergenic |
CTGCCCTCTGTACCTTAGCA+AGG | 0.618015 | 1:+95545539 | None:intergenic |
ATAACTGCACTGGTCTCCAA+GGG | 0.620138 | 1:-95546379 | MsG0180005741.01.T01:CDS |
GCTAAGTGTGACCCTCGCCA+TGG | 0.621505 | 1:-95545733 | MsG0180005741.01.T01:CDS |
CCAAGAGGGAGTGGGTGGAG+AGG | 0.621744 | 1:+95546195 | None:intergenic |
CTCACCTCATCGATAACAGT+GGG | 0.621848 | 1:+95546641 | None:intergenic |
AACATCAGTGTGCTCCAAGA+GGG | 0.623268 | 1:+95546181 | None:intergenic |
ATACCACACTTGAAACCAGT+AGG | 0.623812 | 1:+95545598 | None:intergenic |
AGAAACAAGACGGTTAAGGT+TGG | 0.623820 | 1:+95546085 | None:intergenic |
CACCGTTCGTAAACCAACCA+TGG | 0.624077 | 1:-95548002 | MsG0180005741.01.T01:five_prime_UTR |
CCTCCAACAGTCTTGTCGCT+CGG | 0.624881 | 1:+95546746 | None:intergenic |
CCACCTACTGTTGTTCCTGG+TGG | 0.628220 | 1:-95545565 | MsG0180005741.01.T01:CDS |
TCACCACCAGGAACAACAGT+AGG | 0.629041 | 1:+95545562 | None:intergenic |
TCTGGGATATGGGACCAAGT+TGG | 0.629717 | 1:+95545870 | None:intergenic |
AGAGGTGGAAACCTGAGGGG+AGG | 0.631975 | 1:+95546241 | None:intergenic |
TGAATTGAAATGGAACGAAG+AGG | 0.632334 | 1:+95547844 | None:intergenic |
AGGATGGAAGAGTTGGCGAT+AGG | 0.639504 | 1:+95546610 | None:intergenic |
GAGCTTTACTGTCTCGAACA+CGG | 0.642769 | 1:-95547724 | MsG0180005741.01.T01:CDS |
CCTTGGGAACAACATCGCCT+CGG | 0.644372 | 1:+95545683 | None:intergenic |
AGTGTGCTCCAAGAGGGAGT+GGG | 0.645027 | 1:+95546187 | None:intergenic |
AATCAACAGACAGACGCTCA+AGG | 0.649850 | 1:+95546300 | None:intergenic |
GATTTCAAACTCAACAAGTG+TGG | 0.651909 | 1:-95545509 | MsG0180005741.01.T01:CDS |
TGACCTTGCTAAGGTACAGA+GGG | 0.652678 | 1:-95545542 | MsG0180005741.01.T01:CDS |
CATACTGGTATAATGACCAC+GGG | 0.654535 | 1:+95546544 | None:intergenic |
CAACATCAGTGTGCTCCAAG+AGG | 0.655535 | 1:+95546180 | None:intergenic |
GATTGGATGTTTGTGGACCG+TGG | 0.657662 | 1:-95545085 | MsG0180005741.01.T01:three_prime_UTR |
TACCACACTTGAAACCAGTA+GGG | 0.657871 | 1:+95545599 | None:intergenic |
CCACCAGGAACAACAGTAGG+TGG | 0.665309 | 1:+95545565 | None:intergenic |
GTGACCTTGCTAAGGTACAG+AGG | 0.667763 | 1:-95545543 | MsG0180005741.01.T01:CDS |
ACATACTGGTATAATGACCA+CGG | 0.669902 | 1:+95546543 | None:intergenic |
GGTGCCGAGTCTGGTGAGGG+CGG | 0.669914 | 1:-95545334 | MsG0180005741.01.T01:CDS |
GTATGGCTCAACAACAGAGG+TGG | 0.674184 | 1:+95546226 | None:intergenic |
GGTCAAGCCGGTATTCAGGT+CGG | 0.675515 | 1:-95547760 | MsG0180005741.01.T01:CDS |
TGAGCCCACTGTTATCGATG+AGG | 0.676846 | 1:-95546645 | MsG0180005741.01.T01:CDS |
TCGCTACAATCAAAACCAAG+AGG | 0.680258 | 1:-95545645 | MsG0180005741.01.T01:CDS |
TAGCTACCTGAGAAACAAGA+CGG | 0.682350 | 1:+95546075 | None:intergenic |
CCACTGTTATCGATGAGGTG+AGG | 0.685674 | 1:-95546640 | MsG0180005741.01.T01:CDS |
GTCATTGTGATAATTAACCA+TGG | 0.686546 | 1:+95547985 | None:intergenic |
CCTCACCTCATCGATAACAG+TGG | 0.687640 | 1:+95546640 | None:intergenic |
GAGTGCATTTCAGTTCACAT+CGG | 0.696942 | 1:-95547781 | MsG0180005741.01.T01:CDS |
GTTGTATGGCTCAACAACAG+AGG | 0.698181 | 1:+95546223 | None:intergenic |
GCTTGCTGTTTGATGTACCG+AGG | 0.704934 | 1:-95545700 | MsG0180005741.01.T01:CDS |
AACAGAGGTGGAAACCTGAG+GGG | 0.715815 | 1:+95546238 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGATAAAATTGAAAAAATAA+CGG | + | Chr1:95545449-95545468 | None:intergenic | 10.0% |
!! | ATTAGAATATGTTGAATGAT+TGG | - | Chr1:95547904-95547923 | MsG0180005741.01.T01:five_prime_UTR | 20.0% |
!! | TCTGTTTATGAGTTAATATA+TGG | - | Chr1:95545810-95545829 | MsG0180005741.01.T01:CDS | 20.0% |
!! | TTACATAACCTAATAACAAA+CGG | + | Chr1:95545636-95545655 | None:intergenic | 20.0% |
!! | TTACATAACCTAATAACATA+CGG | + | Chr1:95545979-95545998 | None:intergenic | 20.0% |
!!! | TTCTAATGATTTTAGATAAG+AGG | + | Chr1:95547891-95547910 | None:intergenic | 20.0% |
! | AACAATCAACAATTGAAAAG+TGG | + | Chr1:95546065-95546084 | None:intergenic | 25.0% |
! | AGTATCAAACTTCAATTGAA+TGG | + | Chr1:95546126-95546145 | None:intergenic | 25.0% |
! | ATATATGTTATCTATGTTCG+TGG | - | Chr1:95545942-95545961 | MsG0180005741.01.T01:CDS | 25.0% |
! | ATCAAATTTAGAAACAATGC+TGG | + | Chr1:95545489-95545508 | None:intergenic | 25.0% |
! | ATCACAAATGAGTAATAATG+TGG | + | Chr1:95546504-95546523 | None:intergenic | 25.0% |
! | CAACATATGTAAGAAACAAT+AGG | + | Chr1:95547795-95547814 | None:intergenic | 25.0% |
! | TATTAGATCCGTATGTTATT+AGG | - | Chr1:95545968-95545987 | MsG0180005741.01.T01:intron | 25.0% |
! | TCAATTGAAGTTTGATACTA+TGG | - | Chr1:95546127-95546146 | MsG0180005741.01.T01:CDS | 25.0% |
! | TGTAATATTTATGAAATCGC+TGG | - | Chr1:95545575-95545594 | MsG0180005741.01.T01:CDS | 25.0% |
! | TTATTTCAAGAGCTCATATA+TGG | - | Chr1:95546206-95546225 | MsG0180005741.01.T01:CDS | 25.0% |
! | TTTCCTTAGATCTGAAAAAT+AGG | + | Chr1:95545421-95545440 | None:intergenic | 25.0% |
!!! | AATTTGTGTTACTTTCAGTT+GGG | - | Chr1:95546558-95546577 | MsG0180005741.01.T01:CDS | 25.0% |
!!! | ATTTTCCATGTTGACTTAAT+CGG | - | Chr1:95545507-95545526 | MsG0180005741.01.T01:CDS | 25.0% |
!!! | CTTTGTTTTTGATTGTTTTC+AGG | - | Chr1:95547044-95547063 | MsG0180005741.01.T01:intron | 25.0% |
!!! | GAATTTTTGTTTGAATCTTG+CGG | - | Chr1:95545679-95545698 | MsG0180005741.01.T01:CDS | 25.0% |
!!! | GTGTGAGTTTTATTTATAGA+GGG | + | Chr1:95545069-95545088 | None:intergenic | 25.0% |
!!! | GTTGTTTTGTTATGTTATCT+TGG | - | Chr1:95545881-95545900 | MsG0180005741.01.T01:CDS | 25.0% |
!!! | TAATTTGTGTTACTTTCAGT+TGG | - | Chr1:95546557-95546576 | MsG0180005741.01.T01:CDS | 25.0% |
!!! | TGTGTGAGTTTTATTTATAG+AGG | + | Chr1:95545070-95545089 | None:intergenic | 25.0% |
AAATCTGAACGAAAATGGAA+TGG | + | Chr1:95545343-95545362 | None:intergenic | 30.0% | |
ACAATTCTGATTGTGAATTG+CGG | - | Chr1:95546973-95546992 | MsG0180005741.01.T01:intron | 30.0% | |
ACGAAGAGAATGAATTGAAA+TGG | + | Chr1:95545175-95545194 | None:intergenic | 30.0% | |
ATCACAAATCTGAACGAAAA+TGG | + | Chr1:95545348-95545367 | None:intergenic | 30.0% | |
CATGAAAACAATTCATCCAA+AGG | + | Chr1:95547770-95547789 | None:intergenic | 30.0% | |
GAAAAGGATTATGAAGAAGT+TGG | - | Chr1:95547651-95547670 | MsG0180005741.01.T01:intron | 30.0% | |
GTCATTGTGATAATTAACCA+TGG | + | Chr1:95545024-95545043 | None:intergenic | 30.0% | |
TTGTGATAATTAACCATGGT+TGG | + | Chr1:95545020-95545039 | None:intergenic | 30.0% | |
! | CATATGAAGAAAGCATGAAA+TGG | + | Chr1:95547164-95547183 | None:intergenic | 30.0% |
!! | GTTCCTATTTTTCAGATCTA+AGG | - | Chr1:95545415-95545434 | MsG0180005741.01.T01:CDS | 30.0% |
!! | TAGTAGATCCGTTTGTTATT+AGG | - | Chr1:95545625-95545644 | MsG0180005741.01.T01:CDS | 30.0% |
!!! | TTTTTGGTTTTCAATGCTGT+TGG | - | Chr1:95546650-95546669 | MsG0180005741.01.T01:CDS | 30.0% |
AAGATCTACAAAAACAGCAC+GGG | + | Chr1:95546342-95546361 | None:intergenic | 35.0% | |
ACATACTGGTATAATGACCA+CGG | + | Chr1:95546466-95546485 | None:intergenic | 35.0% | |
ATCAAGAGTCAAGACCTAAA+CGG | - | Chr1:95547815-95547834 | MsG0180005741.01.T01:five_prime_UTR | 35.0% | |
ATGGAAAGAAATCCAAGCTT+GGG | - | Chr1:95546729-95546748 | MsG0180005741.01.T01:CDS | 35.0% | |
CAAGATCTACAAAAACAGCA+CGG | + | Chr1:95546343-95546362 | None:intergenic | 35.0% | |
CATTGAAAACCAAAAACCCT+TGG | + | Chr1:95546646-95546665 | None:intergenic | 35.0% | |
GAAAAGTAGATAACCCGTTT+AGG | + | Chr1:95547832-95547851 | None:intergenic | 35.0% | |
GATCTAGATCTGATTATGAG+AGG | + | Chr1:95545102-95545121 | None:intergenic | 35.0% | |
GATTTCAAACTCAACAAGTG+TGG | - | Chr1:95547497-95547516 | MsG0180005741.01.T01:intron | 35.0% | |
GTTGAATGATTGGATGTTTG+TGG | - | Chr1:95547914-95547933 | MsG0180005741.01.T01:five_prime_UTR | 35.0% | |
TATGGAAAGAAATCCAAGCT+TGG | - | Chr1:95546728-95546747 | MsG0180005741.01.T01:CDS | 35.0% | |
TCAGATCTAGATCTAGAAGA+AGG | - | Chr1:95545109-95545128 | MsG0180005741.01.T01:three_prime_UTR | 35.0% | |
TGAATTGAAATGGAACGAAG+AGG | + | Chr1:95545165-95545184 | None:intergenic | 35.0% | |
TTTGTGATATGCGTTTCTCT+AGG | - | Chr1:95545360-95545379 | MsG0180005741.01.T01:CDS | 35.0% | |
! | AGAAAGCATGAAATGGATTC+TGG | + | Chr1:95547157-95547176 | None:intergenic | 35.0% |
! | GAAAGCATGAAATGGATTCT+GGG | + | Chr1:95547156-95547175 | None:intergenic | 35.0% |
! | TCATTTTCTAAACACAGCCA+CGG | + | Chr1:95547941-95547960 | None:intergenic | 35.0% |
! | TTCTTTGTGTGTTGTTCCTT+TGG | - | Chr1:95547751-95547770 | MsG0180005741.01.T01:CDS | 35.0% |
! | TTTTGAGCCATCATCTATGA+TGG | - | Chr1:95547251-95547270 | MsG0180005741.01.T01:intron | 35.0% |
!! | ATGAAATGGATTCTGGGATA+TGG | + | Chr1:95547150-95547169 | None:intergenic | 35.0% |
!! | TGAAATGGATTCTGGGATAT+GGG | + | Chr1:95547149-95547168 | None:intergenic | 35.0% |
AAACCTCAAAGAAGCAGTCA+AGG | + | Chr1:95547079-95547098 | None:intergenic | 40.0% | |
AAGCTATCTATGACATCTGC+AGG | - | Chr1:95546867-95546886 | MsG0180005741.01.T01:intron | 40.0% | |
AGAAACAAGACGGTTAAGGT+TGG | + | Chr1:95546924-95546943 | None:intergenic | 40.0% | |
AGAGATCGTTGATCTGTGTT+TGG | - | Chr1:95546583-95546602 | MsG0180005741.01.T01:CDS | 40.0% | |
AGATCTACAAAAACAGCACG+GGG | + | Chr1:95546341-95546360 | None:intergenic | 40.0% | |
ATACCACACTTGAAACCAGT+AGG | + | Chr1:95547411-95547430 | None:intergenic | 40.0% | |
ATAGACAGTAAACCCAAGCT+TGG | + | Chr1:95546744-95546763 | None:intergenic | 40.0% | |
CACTTAGCCATCATAGATGA+TGG | + | Chr1:95547261-95547280 | None:intergenic | 40.0% | |
CAGATCCGATTAAGTCAACA+TGG | + | Chr1:95545515-95545534 | None:intergenic | 40.0% | |
CATACTGGTATAATGACCAC+GGG | + | Chr1:95546465-95546484 | None:intergenic | 40.0% | |
GAGTGCATTTCAGTTCACAT+CGG | - | Chr1:95545225-95545244 | MsG0180005741.01.T01:three_prime_UTR | 40.0% | |
GCATTTGTTCACTGGTATGT+GGG | - | Chr1:95547573-95547592 | MsG0180005741.01.T01:intron | 40.0% | |
GCTTTCTCAGCAGATATAAC+TGG | + | Chr1:95547189-95547208 | None:intergenic | 40.0% | |
TACCACACTTGAAACCAGTA+GGG | + | Chr1:95547410-95547429 | None:intergenic | 40.0% | |
TAGCTACCTGAGAAACAAGA+CGG | + | Chr1:95546934-95546953 | None:intergenic | 40.0% | |
TATCAGCAAGCTTTCTGATG+CGG | + | Chr1:95546610-95546629 | None:intergenic | 40.0% | |
TCAAGAGTCAAGACCTAAAC+GGG | - | Chr1:95547816-95547835 | MsG0180005741.01.T01:five_prime_UTR | 40.0% | |
TCGCTACAATCAAAACCAAG+AGG | - | Chr1:95547361-95547380 | MsG0180005741.01.T01:intron | 40.0% | |
TGCATTTGTTCACTGGTATG+TGG | - | Chr1:95547572-95547591 | MsG0180005741.01.T01:intron | 40.0% | |
TTCTTATATGCACAGCCTGA+TGG | - | Chr1:95546230-95546249 | MsG0180005741.01.T01:CDS | 40.0% | |
! | CTCTCATTTTCGCTGATCAA+AGG | + | Chr1:95545206-95545225 | None:intergenic | 40.0% |
!! | AACCATGGTTGGTTTACGAA+CGG | + | Chr1:95545009-95545028 | None:intergenic | 40.0% |
!! | ACTGCTTCTTTGAGGTTTGA+TGG | - | Chr1:95547081-95547100 | MsG0180005741.01.T01:intron | 40.0% |
!! | TTGGTTTTCAATGCTGTTGG+AGG | - | Chr1:95546653-95546672 | MsG0180005741.01.T01:CDS | 40.0% |
!!! | AAGGAGAATTTTCTGAAGCC+CGG | - | Chr1:95547610-95547629 | MsG0180005741.01.T01:intron | 40.0% |
AAACTCAACAAGTGTGGCTG+AGG | - | Chr1:95547503-95547522 | MsG0180005741.01.T01:intron | 45.0% | |
AACATCAGTGTGCTCCAAGA+GGG | + | Chr1:95546828-95546847 | None:intergenic | 45.0% | |
AATCAACAGACAGACGCTCA+AGG | + | Chr1:95546709-95546728 | None:intergenic | 45.0% | |
ACAGCAGCATTCACATCCTT+GGG | + | Chr1:95547342-95547361 | None:intergenic | 45.0% | |
AGCAAGCCATGTACTTTCCA+TGG | + | Chr1:95547293-95547312 | None:intergenic | 45.0% | |
AGCATTTCCGACCTGAATAC+CGG | + | Chr1:95545256-95545275 | None:intergenic | 45.0% | |
CAAGAGGACCATTCAGTTTG+TGG | - | Chr1:95547377-95547396 | MsG0180005741.01.T01:intron | 45.0% | |
CACAAACTGAATGGTCCTCT+TGG | + | Chr1:95547379-95547398 | None:intergenic | 45.0% | |
CATCCTTGACTGCTTCTTTG+AGG | - | Chr1:95547073-95547092 | MsG0180005741.01.T01:intron | 45.0% | |
CCTGAGAAACAAGACGGTTA+AGG | + | Chr1:95546928-95546947 | None:intergenic | 45.0% | |
CTCACCTCATCGATAACAGT+GGG | + | Chr1:95546368-95546387 | None:intergenic | 45.0% | |
GACTGAATTCCAGACCAACT+TGG | - | Chr1:95547122-95547141 | MsG0180005741.01.T01:intron | 45.0% | |
GAGCTTTACTGTCTCGAACA+CGG | - | Chr1:95545282-95545301 | MsG0180005741.01.T01:three_prime_UTR | 45.0% | |
GATCTACAAAAACAGCACGG+GGG | + | Chr1:95546340-95546359 | None:intergenic | 45.0% | |
GCACCAATCCACAAACTGAA+TGG | + | Chr1:95547388-95547407 | None:intergenic | 45.0% | |
GGACCATTCAGTTTGTGGAT+TGG | - | Chr1:95547382-95547401 | MsG0180005741.01.T01:intron | 45.0% | |
GTTGCGAGTTAGAGACATAC+TGG | + | Chr1:95546480-95546499 | None:intergenic | 45.0% | |
GTTGTATGGCTCAACAACAG+AGG | + | Chr1:95546786-95546805 | None:intergenic | 45.0% | |
TGACCTTGCTAAGGTACAGA+GGG | - | Chr1:95547464-95547483 | MsG0180005741.01.T01:intron | 45.0% | |
! | ATAACTGCACTGGTCTCCAA+GGG | - | Chr1:95546627-95546646 | MsG0180005741.01.T01:CDS | 45.0% |
! | CACTGATGTTGCTGTTCTTC+TGG | - | Chr1:95546838-95546857 | MsG0180005741.01.T01:intron | 45.0% |
! | GAGCGTCTGTCTGTTGATTA+TGG | - | Chr1:95546710-95546729 | MsG0180005741.01.T01:CDS | 45.0% |
! | GTTTTCAATGCTGTTGGAGG+AGG | - | Chr1:95546656-95546675 | MsG0180005741.01.T01:CDS | 45.0% |
!! | AAGCTTGCTGATAACTGCAC+TGG | - | Chr1:95546617-95546636 | MsG0180005741.01.T01:CDS | 45.0% |
!! | ACGGTTAAGGTTGGTGTAAG+TGG | + | Chr1:95546915-95546934 | None:intergenic | 45.0% |
!! | ATGGTTGGTTTACGAACGGT+GGG | + | Chr1:95545005-95545024 | None:intergenic | 45.0% |
!! | CCTTAACCGTCTTGTTTCTC+AGG | - | Chr1:95546925-95546944 | MsG0180005741.01.T01:intron | 45.0% |
!! | CGGTTAAGGTTGGTGTAAGT+GGG | + | Chr1:95546914-95546933 | None:intergenic | 45.0% |
!! | GGATCTTGCTGCTTTGGAAA+AGG | - | Chr1:95547635-95547654 | MsG0180005741.01.T01:intron | 45.0% |
!! | TGATGGCTCAAAAGCACTGT+TGG | + | Chr1:95547244-95547263 | None:intergenic | 45.0% |
!!! | AGGAGAATTTTCTGAAGCCC+GGG | - | Chr1:95547611-95547630 | MsG0180005741.01.T01:intron | 45.0% |
AACACCTTCTTCAGCGAGAC+TGG | - | Chr1:95546299-95546318 | MsG0180005741.01.T01:CDS | 50.0% | |
AACAGAGGTGGAAACCTGAG+GGG | + | Chr1:95546771-95546790 | None:intergenic | 50.0% | |
AATGCTGTTGGAGGAGGAAC+TGG | - | Chr1:95546662-95546681 | MsG0180005741.01.T01:CDS | 50.0% | |
ACAACAGAGGTGGAAACCTG+AGG | + | Chr1:95546773-95546792 | None:intergenic | 50.0% | |
AGGATGGAAGAGTTGGCGAT+AGG | + | Chr1:95546399-95546418 | None:intergenic | 50.0% | |
CAACAGAGGTGGAAACCTGA+GGG | + | Chr1:95546772-95546791 | None:intergenic | 50.0% | |
CAACATCAGTGTGCTCCAAG+AGG | + | Chr1:95546829-95546848 | None:intergenic | 50.0% | |
CACCGTTCGTAAACCAACCA+TGG | - | Chr1:95545004-95545023 | MsG0180005741.01.T01:three_prime_UTR | 50.0% | |
CCAAGCGTGCATTTGTTCAC+TGG | - | Chr1:95547565-95547584 | MsG0180005741.01.T01:intron | 50.0% | |
CCACTGTTATCGATGAGGTG+AGG | - | Chr1:95546366-95546385 | MsG0180005741.01.T01:CDS | 50.0% | |
CCAGTGAACAAATGCACGCT+TGG | + | Chr1:95547568-95547587 | None:intergenic | 50.0% | |
CCATGTACTTTCCATGGCGA+GGG | + | Chr1:95547287-95547306 | None:intergenic | 50.0% | |
CCTCACCTCATCGATAACAG+TGG | + | Chr1:95546369-95546388 | None:intergenic | 50.0% | |
GACAGCAGCATTCACATCCT+TGG | + | Chr1:95547343-95547362 | None:intergenic | 50.0% | |
GATTGGATGTTTGTGGACCG+TGG | - | Chr1:95547921-95547940 | MsG0180005741.01.T01:five_prime_UTR | 50.0% | |
GTATGGCTCAACAACAGAGG+TGG | + | Chr1:95546783-95546802 | None:intergenic | 50.0% | |
GTGACCTTGCTAAGGTACAG+AGG | - | Chr1:95547463-95547482 | MsG0180005741.01.T01:intron | 50.0% | |
GTGGAGAGGACACTGTTGTA+TGG | + | Chr1:95546800-95546819 | None:intergenic | 50.0% | |
GTTATCGATGAGGTGAGGAC+TGG | - | Chr1:95546371-95546390 | MsG0180005741.01.T01:CDS | 50.0% | |
GTTCACTGGTATGTGGGTGA+GGG | - | Chr1:95547579-95547598 | MsG0180005741.01.T01:intron | 50.0% | |
TACTGTCTCGAACACGGCAT+CGG | - | Chr1:95545288-95545307 | MsG0180005741.01.T01:three_prime_UTR | 50.0% | |
TCACCACCAGGAACAACAGT+AGG | + | Chr1:95547447-95547466 | None:intergenic | 50.0% | |
TCAGGTCGGAAATGCTTGCT+GGG | - | Chr1:95545260-95545279 | MsG0180005741.01.T01:three_prime_UTR | 50.0% | |
TCAGTTCACATCGGTCAAGC+CGG | - | Chr1:95545234-95545253 | MsG0180005741.01.T01:three_prime_UTR | 50.0% | |
TGAGCCCACTGTTATCGATG+AGG | - | Chr1:95546361-95546380 | MsG0180005741.01.T01:CDS | 50.0% | |
TGAGGGCGGTGATGAAGATA+TGG | - | Chr1:95547686-95547705 | MsG0180005741.01.T01:intron | 50.0% | |
TGTTCACTGGTATGTGGGTG+AGG | - | Chr1:95547578-95547597 | MsG0180005741.01.T01:intron | 50.0% | |
TTCAGGTCGGAAATGCTTGC+TGG | - | Chr1:95545259-95545278 | MsG0180005741.01.T01:three_prime_UTR | 50.0% | |
TTGGTTTACGAACGGTGGGT+GGG | + | Chr1:95545001-95545020 | None:intergenic | 50.0% | |
! | ACAAGTGTGGCTGAGGTGTT+TGG | - | Chr1:95547510-95547529 | MsG0180005741.01.T01:intron | 50.0% |
! | GATAACTGCACTGGTCTCCA+AGG | - | Chr1:95546626-95546645 | MsG0180005741.01.T01:CDS | 50.0% |
! | TCTGGGATATGGGACCAAGT+TGG | + | Chr1:95547139-95547158 | None:intergenic | 50.0% |
!! | CACTGGTCTCCAAGGGTTTT+TGG | - | Chr1:95546634-95546653 | MsG0180005741.01.T01:CDS | 50.0% |
!! | CATGGTTGGTTTACGAACGG+TGG | + | Chr1:95545006-95545025 | None:intergenic | 50.0% |
!! | GATATGGGACCAAGTTGGTC+TGG | + | Chr1:95547134-95547153 | None:intergenic | 50.0% |
!! | GCTTGCTGTTTGATGTACCG+AGG | - | Chr1:95547306-95547325 | MsG0180005741.01.T01:intron | 50.0% |
!! | TGCCCTACTGGTTTCAAGTG+TGG | - | Chr1:95547405-95547424 | MsG0180005741.01.T01:intron | 50.0% |
!! | TTTGTGGATTGGTGCCCTAC+TGG | - | Chr1:95547393-95547412 | MsG0180005741.01.T01:intron | 50.0% |
!!! | AGAATTTTCTGAAGCCCGGG+AGG | - | Chr1:95547614-95547633 | MsG0180005741.01.T01:intron | 50.0% |
AAGTGGGACGCTCAATGTCG+AGG | + | Chr1:95546898-95546917 | None:intergenic | 55.0% | |
ACCTTAGCAAGGTCACCACC+AGG | + | Chr1:95547459-95547478 | None:intergenic | 55.0% | |
AGCACCAGTCTCGCTGAAGA+AGG | + | Chr1:95546306-95546325 | None:intergenic | 55.0% | |
AGCGACAAGACTGTTGGAGG+TGG | - | Chr1:95546263-95546282 | MsG0180005741.01.T01:CDS | 55.0% | |
AGTGGGACGCTCAATGTCGA+GGG | + | Chr1:95546897-95546916 | None:intergenic | 55.0% | |
AGTGTGCTCCAAGAGGGAGT+GGG | + | Chr1:95546822-95546841 | None:intergenic | 55.0% | |
ATGACCACGGGCGAAGTTGT+TGG | + | Chr1:95546453-95546472 | None:intergenic | 55.0% | |
ATGCCGAGCGACAAGACTGT+TGG | - | Chr1:95546257-95546276 | MsG0180005741.01.T01:CDS | 55.0% | |
CAAAGCAGCAAGATCCTCCC+GGG | + | Chr1:95547631-95547650 | None:intergenic | 55.0% | |
CACTGATGAGCTGCTCAGGA+TGG | + | Chr1:95546415-95546434 | None:intergenic | 55.0% | |
CAGCCACCTACTGTTGTTCC+TGG | - | Chr1:95547438-95547457 | MsG0180005741.01.T01:intron | 55.0% | |
CATCCTGAGCAGCTCATCAG+TGG | - | Chr1:95546413-95546432 | MsG0180005741.01.T01:CDS | 55.0% | |
CATCGGTCAAGCCGGTATTC+AGG | - | Chr1:95545242-95545261 | MsG0180005741.01.T01:three_prime_UTR | 55.0% | |
CCAAAGCAGCAAGATCCTCC+CGG | + | Chr1:95547632-95547651 | None:intergenic | 55.0% | |
CCACCAGGAACAACAGTAGG+TGG | + | Chr1:95547444-95547463 | None:intergenic | 55.0% | |
CCACCTACTGTTGTTCCTGG+TGG | - | Chr1:95547441-95547460 | MsG0180005741.01.T01:intron | 55.0% | |
CCTTGGGAACAACATCGCCT+CGG | + | Chr1:95547326-95547345 | None:intergenic | 55.0% | |
CTGCCCTCTGTACCTTAGCA+AGG | + | Chr1:95547470-95547489 | None:intergenic | 55.0% | |
CTGGTATGTGGGTGAGGGTA+TGG | - | Chr1:95547584-95547603 | MsG0180005741.01.T01:intron | 55.0% | |
GCCATGTACTTTCCATGGCG+AGG | + | Chr1:95547288-95547307 | None:intergenic | 55.0% | |
GCTGCTCAGGATGGAAGAGT+TGG | + | Chr1:95546406-95546425 | None:intergenic | 55.0% | |
GGTCAAGCCGGTATTCAGGT+CGG | - | Chr1:95545246-95545265 | MsG0180005741.01.T01:three_prime_UTR | 55.0% | |
TACGAACGGTGGGTGGGTAA+TGG | + | Chr1:95544995-95545014 | None:intergenic | 55.0% | |
TACTGTCTATCCCTCCCCTC+AGG | - | Chr1:95546754-95546773 | MsG0180005741.01.T01:CDS | 55.0% | |
TTCTTCAGCGAGACTGGTGC+TGG | - | Chr1:95546305-95546324 | MsG0180005741.01.T01:CDS | 55.0% | |
TTGCCACTGATGAGCTGCTC+AGG | + | Chr1:95546419-95546438 | None:intergenic | 55.0% | |
! | CAGTCTTGTCGCTCGGCATT+TGG | + | Chr1:95546256-95546275 | None:intergenic | 55.0% |
! | CCCTCGCCATGGAAAGTACA+TGG | - | Chr1:95547284-95547303 | MsG0180005741.01.T01:intron | 55.0% |
! | CCTCCAACAGTCTTGTCGCT+CGG | + | Chr1:95546263-95546282 | None:intergenic | 55.0% |
! | GTGGGTGAGGGTATGGAAGA+AGG | - | Chr1:95547591-95547610 | MsG0180005741.01.T01:intron | 55.0% |
! | GTTGGAGGAGGAACTGGTTC+TGG | - | Chr1:95546668-95546687 | MsG0180005741.01.T01:CDS | 55.0% |
! | GTTGGTTTACGAACGGTGGG+TGG | + | Chr1:95545002-95545021 | None:intergenic | 55.0% |
! | TCCTGGTGGTGACCTTGCTA+AGG | - | Chr1:95547455-95547474 | MsG0180005741.01.T01:intron | 55.0% |
!! | GAAGAAGTTGGTGCCGAGTC+TGG | - | Chr1:95547663-95547682 | MsG0180005741.01.T01:intron | 55.0% |
!! | GGAGGAACTGGTTCTGGTCT+TGG | - | Chr1:95546674-95546693 | MsG0180005741.01.T01:CDS | 55.0% |
ACCACGGGCGAAGTTGTTGG+CGG | + | Chr1:95546450-95546469 | None:intergenic | 60.0% | |
AGAGGTGGAAACCTGAGGGG+AGG | + | Chr1:95546768-95546787 | None:intergenic | 60.0% | |
ATCACCGCCCTCACCAGACT+CGG | + | Chr1:95547679-95547698 | None:intergenic | 60.0% | |
CAGTGTGCTCCAAGAGGGAG+TGG | + | Chr1:95546823-95546842 | None:intergenic | 60.0% | |
CCGAGCGACAAGACTGTTGG+AGG | - | Chr1:95546260-95546279 | MsG0180005741.01.T01:CDS | 60.0% | |
CCGAGGCGATGTTGTTCCCA+AGG | - | Chr1:95547323-95547342 | MsG0180005741.01.T01:intron | 60.0% | |
GAGGTGGAAACCTGAGGGGA+GGG | + | Chr1:95546767-95546786 | None:intergenic | 60.0% | |
GCTAAGTGTGACCCTCGCCA+TGG | - | Chr1:95547273-95547292 | MsG0180005741.01.T01:intron | 60.0% | |
TCGCTCGGCATTTGGCCATC+AGG | + | Chr1:95546248-95546267 | None:intergenic | 60.0% | |
! | CCGGGAGGATCTTGCTGCTT+TGG | - | Chr1:95547629-95547648 | MsG0180005741.01.T01:intron | 60.0% |
!! | AGTTGGTGCCGAGTCTGGTG+AGG | - | Chr1:95547668-95547687 | MsG0180005741.01.T01:intron | 60.0% |
!! | GTTGGTGCCGAGTCTGGTGA+GGG | - | Chr1:95547669-95547688 | MsG0180005741.01.T01:intron | 60.0% |
CCAAGAGGGAGTGGGTGGAG+AGG | + | Chr1:95546814-95546833 | None:intergenic | 65.0% | |
CCTCTCCACCCACTCCCTCT+TGG | - | Chr1:95546811-95546830 | MsG0180005741.01.T01:intron | 65.0% | |
GTGCTCCAAGAGGGAGTGGG+TGG | + | Chr1:95546819-95546838 | None:intergenic | 65.0% | |
GCCGCCAACAACTTCGCCCG+TGG | - | Chr1:95546446-95546465 | MsG0180005741.01.T01:intron | 70.0% | |
! | GGTGCCGAGTCTGGTGAGGG+CGG | - | Chr1:95547672-95547691 | MsG0180005741.01.T01:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
Chr1 | gene | 95544971 | 95548057 | 95544971 | ID=MsG0180005741.01;Name=MsG0180005741.01 |
Chr1 | mRNA | 95544971 | 95548057 | 95544971 | ID=MsG0180005741.01.T01;Parent=MsG0180005741.01;Name=MsG0180005741.01.T01;_AED=0.19;_eAED=0.19;_QI=248|1|1|1|1|1|4|338|450 |
Chr1 | exon | 95544971 | 95545962 | 95544971 | ID=MsG0180005741.01.T01:exon:50322;Parent=MsG0180005741.01.T01 |
Chr1 | exon | 95546082 | 95546452 | 95546082 | ID=MsG0180005741.01.T01:exon:50321;Parent=MsG0180005741.01.T01 |
Chr1 | exon | 95546549 | 95546783 | 95546549 | ID=MsG0180005741.01.T01:exon:50320;Parent=MsG0180005741.01.T01 |
Chr1 | exon | 95547717 | 95548057 | 95547717 | ID=MsG0180005741.01.T01:exon:50319;Parent=MsG0180005741.01.T01 |
Chr1 | five_prime_UTR | 95547810 | 95548057 | 95547810 | ID=MsG0180005741.01.T01:five_prime_utr;Parent=MsG0180005741.01.T01 |
Chr1 | CDS | 95547717 | 95547809 | 95547717 | ID=MsG0180005741.01.T01:cds;Parent=MsG0180005741.01.T01 |
Chr1 | CDS | 95546549 | 95546783 | 95546549 | ID=MsG0180005741.01.T01:cds;Parent=MsG0180005741.01.T01 |
Chr1 | CDS | 95546082 | 95546452 | 95546082 | ID=MsG0180005741.01.T01:cds;Parent=MsG0180005741.01.T01 |
Chr1 | CDS | 95545309 | 95545962 | 95545309 | ID=MsG0180005741.01.T01:cds;Parent=MsG0180005741.01.T01 |
Chr1 | three_prime_UTR | 95544971 | 95545308 | 95544971 | ID=MsG0180005741.01.T01:three_prime_utr;Parent=MsG0180005741.01.T01 |
Gene Sequence |
Protein sequence |