Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003302.01.T01 | XP_013467905.1 | 99.333 | 150 | 1 | 0 | 4 | 153 | 719 | 868 | 1.84E-97 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003302.01.T01 | P93422 | 60.927 | 151 | 55 | 3 | 4 | 153 | 641 | 788 | 3.61E-53 | 182 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003302.01.T01 | A0A072VJI1 | 99.333 | 150 | 1 | 0 | 4 | 153 | 719 | 868 | 8.79e-98 | 309 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080047940.01 | MsG0180003302.01 | 0.819716 | 1.003711e-52 | 7.784137e-50 |
| MsG0080048135.01 | MsG0180003302.01 | 0.810750 | 9.869128e-51 | 5.998892e-48 |
| MsG0080049013.01 | MsG0180003302.01 | -0.824566 | 7.529615e-54 | 6.694627e-51 |
| MsG0180000575.01 | MsG0180003302.01 | 0.802152 | 6.425732e-49 | 3.124767e-46 |
| MsG0180000614.01 | MsG0180003302.01 | 0.802400 | 5.712759e-49 | 2.795768e-46 |
| MsG0180000679.01 | MsG0180003302.01 | 0.827099 | 1.885937e-54 | 1.802712e-51 |
| MsG0180000743.01 | MsG0180003302.01 | 0.842432 | 2.595857e-58 | 3.935679e-55 |
| MsG0180002482.01 | MsG0180003302.01 | 0.813740 | 2.196954e-51 | 1.446491e-48 |
| MsG0180003302.01 | MsG0180003409.01 | 0.835623 | 1.506578e-56 | 1.852445e-53 |
| MsG0180003302.01 | MsG0180004050.01 | 0.802495 | 5.459109e-49 | 2.677992e-46 |
| MsG0180003302.01 | MsG0180004481.01 | 0.801371 | 9.293926e-49 | 4.430961e-46 |
| MsG0180003302.01 | MsG0180004509.01 | 0.835322 | 1.795133e-56 | 2.187815e-53 |
| MsG0180003302.01 | MsG0180004566.01 | 0.827764 | 1.306454e-54 | 1.273203e-51 |
| MsG0180003302.01 | MsG0180005851.01 | 0.861986 | 6.975191e-64 | 2.010458e-60 |
| MsG0180003302.01 | MsG0180005993.01 | 0.843163 | 1.658642e-58 | 2.572440e-55 |
| MsG0180003302.01 | MsG0180006013.01 | 0.847055 | 1.473155e-59 | 2.586522e-56 |
| MsG0180003302.01 | MsG0180006261.01 | 0.835954 | 1.241842e-56 | 1.542216e-53 |
| MsG0180003302.01 | MsG0280006313.01 | 0.814031 | 1.895031e-51 | 1.257601e-48 |
| MsG0180003302.01 | MsG0280006406.01 | 0.817113 | 3.901667e-52 | 2.816203e-49 |
| MsG0180003302.01 | MsG0280006407.01 | 0.823264 | 1.521056e-53 | 1.303220e-50 |
| MsG0180003302.01 | MsG0280006422.01 | 0.829880 | 4.018743e-55 | 4.166790e-52 |
| MsG0180003302.01 | MsG0280006544.01 | 0.830526 | 2.794709e-55 | 2.951883e-52 |
| MsG0180003302.01 | MsG0280007088.01 | 0.855787 | 4.990345e-62 | 1.165641e-58 |
| MsG0180003302.01 | MsG0280007715.01 | 0.823200 | 1.574498e-53 | 1.346595e-50 |
| MsG0180003302.01 | MsG0280007841.01 | 0.800668 | 1.293714e-48 | 6.059196e-46 |
| MsG0180003302.01 | MsG0280008971.01 | 0.805805 | 1.117750e-49 | 5.969660e-47 |
| MsG0180003302.01 | MsG0280009109.01 | 0.874836 | 4.944862e-68 | 2.259646e-64 |
| MsG0180003302.01 | MsG0280009140.01 | 0.827808 | 1.274966e-54 | 1.244079e-51 |
| MsG0180003302.01 | MsG0280011141.01 | 0.804183 | 2.440983e-49 | 1.250336e-46 |
| MsG0180003302.01 | MsG0280011446.01 | 0.806409 | 8.343973e-50 | 4.525393e-47 |
| MsG0180003302.01 | MsG0380012073.01 | 0.812431 | 4.253699e-51 | 2.704247e-48 |
| MsG0180003302.01 | MsG0380012471.01 | 0.804695 | 1.908964e-49 | 9.908434e-47 |
| MsG0180003302.01 | MsG0380014647.01 | 0.812576 | 3.955398e-51 | 2.524071e-48 |
| MsG0180003302.01 | MsG0380015027.01 | 0.832714 | 8.076009e-56 | 9.101371e-53 |
| MsG0180003302.01 | MsG0380015164.01 | 0.805780 | 1.131453e-49 | 6.039077e-47 |
| MsG0180003302.01 | MsG0380016389.01 | 0.804642 | 1.958941e-49 | 1.015344e-46 |
| MsG0180003302.01 | MsG0380017382.01 | 0.814843 | 1.253069e-51 | 8.500330e-49 |
| MsG0180003302.01 | MsG0480018461.01 | 0.803998 | 2.667337e-49 | 1.359881e-46 |
| MsG0180003302.01 | MsG0480018477.01 | 0.811467 | 6.901440e-51 | 4.275294e-48 |
| MsG0180003302.01 | MsG0480019375.01 | 0.820635 | 6.179152e-53 | 4.915605e-50 |
| MsG0180003302.01 | MsG0480019486.01 | 0.905873 | 2.707749e-80 | 4.471331e-76 |
| MsG0180003302.01 | MsG0480020874.01 | 0.800138 | 1.658865e-48 | 7.665593e-46 |
| MsG0180003302.01 | MsG0480021448.01 | 0.802308 | 5.967347e-49 | 2.913592e-46 |
| MsG0180003302.01 | MsG0480021451.01 | 0.810641 | 1.042062e-50 | 6.315588e-48 |
| MsG0180003302.01 | MsG0480021453.01 | 0.826508 | 2.610066e-54 | 2.452650e-51 |
| MsG0180003302.01 | MsG0480021953.01 | 0.861987 | 6.968996e-64 | 2.008834e-60 |
| MsG0180003302.01 | MsG0480021994.01 | 0.832649 | 8.377945e-56 | 9.423536e-53 |
| MsG0180003302.01 | MsG0480022035.01 | 0.806377 | 8.472486e-50 | 4.591430e-47 |
| MsG0180003302.01 | MsG0480022164.01 | 0.808930 | 2.431146e-50 | 1.408071e-47 |
| MsG0180003302.01 | MsG0480022768.01 | 0.810046 | 1.400375e-50 | 8.355284e-48 |
| MsG0180003302.01 | MsG0480022791.01 | 0.823646 | 1.238396e-53 | 1.072649e-50 |
| MsG0180003302.01 | MsG0480022795.01 | 0.849064 | 4.109543e-60 | 7.697446e-57 |
| MsG0180003302.01 | MsG0480022836.01 | 0.821746 | 3.426650e-53 | 2.811911e-50 |
| MsG0180003302.01 | MsG0480023014.01 | 0.803357 | 3.623394e-49 | 1.816951e-46 |
| MsG0180003302.01 | MsG0480023282.01 | 0.823942 | 1.055774e-53 | 9.221247e-51 |
| MsG0180003302.01 | MsG0480023361.01 | 0.826003 | 3.442360e-54 | 3.188693e-51 |
| MsG0180003302.01 | MsG0480023399.01 | 0.812907 | 3.346600e-51 | 2.154275e-48 |
| MsG0180003302.01 | MsG0480023415.01 | 0.804155 | 2.473610e-49 | 1.266186e-46 |
| MsG0180003302.01 | MsG0480023707.01 | 0.801215 | 1.000389e-48 | 4.750677e-46 |
| MsG0180003302.01 | MsG0580024458.01 | -0.824248 | 8.947967e-54 | 7.882335e-51 |
| MsG0180003302.01 | MsG0580025134.01 | 0.812410 | 4.299761e-51 | 2.731970e-48 |
| MsG0180003302.01 | MsG0580025421.01 | 0.810675 | 1.024418e-50 | 6.214399e-48 |
| MsG0180003302.01 | MsG0580029952.01 | 0.837137 | 6.207117e-57 | 7.988325e-54 |
| MsG0180003302.01 | MsG0680031651.01 | 0.805770 | 1.136981e-49 | 6.067028e-47 |
| MsG0180003302.01 | MsG0680032430.01 | 0.842233 | 2.930961e-58 | 4.415109e-55 |
| MsG0180003302.01 | MsG0780036139.01 | 0.854986 | 8.539258e-62 | 1.942066e-58 |
| MsG0180003302.01 | MsG0780036184.01 | -0.818445 | 1.952712e-52 | 1.462149e-49 |
| MsG0180003302.01 | MsG0780036240.01 | 0.807366 | 5.235939e-50 | 2.910819e-47 |
| MsG0180003302.01 | MsG0780038400.01 | 0.824323 | 8.589403e-54 | 7.582695e-51 |
| MsG0180003302.01 | MsG0780038587.01 | 0.837119 | 6.271884e-57 | 8.067249e-54 |
| MsG0180003302.01 | MsG0780038645.01 | 0.888685 | 4.740274e-73 | 3.709133e-69 |
| MsG0180003302.01 | MsG0780039137.01 | 0.805993 | 1.020563e-49 | 5.477102e-47 |
| MsG0180003302.01 | MsG0780039841.01 | 0.805897 | 1.069111e-49 | 5.723384e-47 |
| MsG0180003302.01 | MsG0780039844.01 | 0.862593 | 4.540455e-64 | 1.336830e-60 |
| MsG0180003302.01 | MsG0780040861.01 | 0.844846 | 5.869909e-59 | 9.598955e-56 |
| MsG0180003302.01 | MsG0780041295.01 | 0.851180 | 1.049785e-60 | 2.107213e-57 |
| MsG0180003302.01 | MsG0780041462.01 | 0.837287 | 5.681748e-57 | 7.345876e-54 |
| MsG0180003302.01 | MsG0880042519.01 | 0.815368 | 9.579955e-52 | 6.592386e-49 |
| MsG0180003302.01 | MsG0880042848.01 | 0.826437 | 2.714949e-54 | 2.546080e-51 |
| MsG0180003302.01 | MsG0880043465.01 | 0.800654 | 1.302157e-48 | 6.096600e-46 |
| MsG0180003302.01 | MsG0880045704.01 | -0.818957 | 1.494782e-52 | 1.135156e-49 |
| MsG0180003302.01 | MsG0880046177.01 | 0.842595 | 2.348773e-58 | 3.578800e-55 |
| MsG0180003302.01 | MsG0880046285.01 | 0.801449 | 8.956888e-49 | 4.278674e-46 |
| MsG0180003302.01 | MsG0880046328.01 | 0.829776 | 4.259533e-55 | 4.403322e-52 |
| MsG0180003302.01 | MsG0880046933.01 | 0.843815 | 1.111252e-58 | 1.759285e-55 |
| MsG0180003302.01 | MsG0880047038.01 | 0.818835 | 1.592715e-52 | 1.205398e-49 |
| MsG0180003302.01 | MsG0880047427.01 | 0.869662 | 2.618012e-66 | 9.902999e-63 |
| MsG0180003302.01 | MsG0880047448.01 | 0.811595 | 6.471534e-51 | 4.022369e-48 |
| MsG0180003302.01 | MsG0880047607.01 | 0.814842 | 1.253875e-51 | 8.505412e-49 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003302.01.T01 | MTR_1g057860 | 99.333 | 150 | 1 | 0 | 4 | 153 | 719 | 868 | 2.23e-101 | 309 |
| MsG0180003302.01.T01 | MTR_5g091840 | 53.659 | 123 | 35 | 3 | 53 | 153 | 1 | 123 | 1.15e-28 | 102 |
| MsG0180003302.01.T01 | MTR_1g057880 | 95.833 | 48 | 2 | 0 | 5 | 52 | 74 | 121 | 5.47e-26 | 95.9 |
| MsG0180003302.01.T01 | MTR_1g022010 | 62.687 | 67 | 17 | 2 | 5 | 65 | 165 | 229 | 7.17e-18 | 79.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0180003302.01.T01 | AT3G02760 | 58.278 | 151 | 60 | 2 | 4 | 151 | 733 | 883 | 1.23e-50 | 173 |
| MsG0180003302.01.T01 | AT3G02760 | 58.278 | 151 | 60 | 2 | 4 | 151 | 733 | 883 | 1.23e-50 | 173 |
Find 53 sgRNAs with CRISPR-Local
Find 91 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGTCCTAGTGAGCATATT+AGG | 0.192256 | 1:-60235617 | MsG0180003302.01.T01:CDS |
| GCTACAAACACCGGGACTTA+TGG | 0.237268 | 1:+60235338 | None:intergenic |
| CTTCTGTTGTTGCTCCATTA+TGG | 0.279186 | 1:+60236104 | None:intergenic |
| CTACAAACACCGGGACTTAT+GGG | 0.333119 | 1:+60235339 | None:intergenic |
| TCCAGCAGTTGGTGTAAGTC+TGG | 0.342849 | 1:-60236145 | MsG0180003302.01.T01:CDS |
| TGGAGTTAAAGCAGAATTCT+TGG | 0.351175 | 1:-60235546 | MsG0180003302.01.T01:CDS |
| CATCCTACTTGGCATGTGTT+TGG | 0.353353 | 1:-60235316 | MsG0180003302.01.T01:three_prime_UTR |
| CGAGAGAGTATTTGCCATAA+TGG | 0.385031 | 1:-60236118 | MsG0180003302.01.T01:CDS |
| TTCGCATAGTCAAAGTGCTT+TGG | 0.397277 | 1:+60235509 | None:intergenic |
| GTTTGTCGTACTCTAGTTGA+AGG | 0.399143 | 1:-60235221 | MsG0180003302.01.T01:three_prime_UTR |
| GGTCGATACGATAACCTGAT+AGG | 0.399560 | 1:-60236189 | MsG0180003302.01.T01:CDS |
| TCGAACCAAACATCCCTATC+AGG | 0.415605 | 1:+60236175 | None:intergenic |
| GCTGGTGAACTGTGGGATGC+TGG | 0.422884 | 1:-60235566 | MsG0180003302.01.T01:CDS |
| AAGTCCTAGTGAGCATATTA+GGG | 0.434249 | 1:-60235616 | MsG0180003302.01.T01:CDS |
| GAAATTATCTCACGTAACTT+AGG | 0.442396 | 1:+60235262 | None:intergenic |
| GATAACCTGATAGGGATGTT+TGG | 0.446654 | 1:-60236180 | MsG0180003302.01.T01:CDS |
| GGGAATGATGTAACACTAGC+TGG | 0.463967 | 1:-60235596 | MsG0180003302.01.T01:CDS |
| GCTCACTAGGACTTCTGTCT+TGG | 0.464076 | 1:+60235625 | None:intergenic |
| GGTGTTTGTAGCATCCTACT+TGG | 0.470236 | 1:-60235327 | MsG0180003302.01.T01:three_prime_UTR |
| CCCAGACTTACACCAACTGC+TGG | 0.472667 | 1:+60236144 | None:intergenic |
| GGAGTAGACTAATTGAACTT+TGG | 0.486506 | 1:-60235087 | MsG0180003302.01.T01:three_prime_UTR |
| CATTCCCTAATATGCTCACT+AGG | 0.506109 | 1:+60235612 | None:intergenic |
| CGAAAGAATCAAGAATCCCT+TGG | 0.512150 | 1:-60235490 | MsG0180003302.01.T01:CDS |
| GATGATACTTGTTGGTGAGC+AGG | 0.515279 | 1:-60235468 | MsG0180003302.01.T01:CDS |
| CAACTGAAAAGCCTCGAGTC+AGG | 0.521052 | 1:-60235425 | MsG0180003302.01.T01:CDS |
| CTAAAATAACTGTTCCGTTG+TGG | 0.525861 | 1:-60235057 | MsG0180003302.01.T01:three_prime_UTR |
| ACTAGGACTTCTGTCTTGGT+TGG | 0.529009 | 1:+60235629 | None:intergenic |
| CAGGTTGGTTCAATTGCTGC+TGG | 0.530641 | 1:-60236213 | MsG0180003302.01.T01:CDS |
| TACTCTAGTTGAAGGAGTAT+AGG | 0.534874 | 1:-60235213 | MsG0180003302.01.T01:three_prime_UTR |
| ATTTATCAAATTTAGTTGAG+AGG | 0.542507 | 1:-60235162 | MsG0180003302.01.T01:three_prime_UTR |
| TTGTTGAGGAACTTCGGAAA+CGG | 0.545775 | 1:-60235367 | MsG0180003302.01.T01:CDS |
| ATCCCTTGGATGATACTTGT+TGG | 0.551773 | 1:-60235476 | MsG0180003302.01.T01:CDS |
| TCGAAGCAAGTTCCAGCAGT+TGG | 0.553760 | 1:-60236156 | MsG0180003302.01.T01:CDS |
| CCAGCAGTTGGTGTAAGTCT+GGG | 0.556025 | 1:-60236144 | MsG0180003302.01.T01:CDS |
| ACACTAGCTGGAGAGCTAGC+TGG | 0.561864 | 1:-60235584 | MsG0180003302.01.T01:CDS |
| GTCGATACGATAACCTGATA+GGG | 0.570054 | 1:-60236188 | MsG0180003302.01.T01:CDS |
| CATAATGGAGCAACAACAGA+AGG | 0.581880 | 1:-60236103 | MsG0180003302.01.T01:CDS |
| ACGGTTAAACCCATAAGTCC+CGG | 0.584928 | 1:-60235348 | MsG0180003302.01.T01:exon |
| ACTCCAAACACATGCCAAGT+AGG | 0.591877 | 1:+60235313 | None:intergenic |
| GGTGAGCAGGAAATAAAAGA+AGG | 0.593607 | 1:-60235455 | MsG0180003302.01.T01:CDS |
| GAGAGCTAGCTGGTGAACTG+TGG | 0.602920 | 1:-60235574 | MsG0180003302.01.T01:CDS |
| AAGTAGGATGCTACAAACAC+CGG | 0.606252 | 1:+60235329 | None:intergenic |
| AGAGCTAGCTGGTGAACTGT+GGG | 0.614291 | 1:-60235573 | MsG0180003302.01.T01:CDS |
| TCACCAACAAGTATCATCCA+AGG | 0.624639 | 1:+60235473 | None:intergenic |
| TTACATCATTACCTGACTCG+AGG | 0.629762 | 1:+60235414 | None:intergenic |
| GTTGGTTCAATTGCTGCTGG+TGG | 0.636788 | 1:-60236210 | MsG0180003302.01.T01:CDS |
| CACCAACAAGTATCATCCAA+GGG | 0.637651 | 1:+60235474 | None:intergenic |
| AGAGTACGACAAACAATGAA+CGG | 0.639223 | 1:+60235230 | None:intergenic |
| ACAACAGAAGGATCAGAACC+AGG | 0.647677 | 1:-60236091 | MsG0180003302.01.T01:intron |
| AGTAGGATGCTACAAACACC+GGG | 0.663476 | 1:+60235330 | None:intergenic |
| GCAGGAAATAAAAGAAGGCA+CGG | 0.665098 | 1:-60235450 | MsG0180003302.01.T01:CDS |
| TTTACACAGATAAACCACAA+CGG | 0.743849 | 1:+60235043 | None:intergenic |
| GTACGACAAACAATGAACGG+TGG | 0.753783 | 1:+60235233 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGAAGAAAAAAAGAAAAT+AGG | + | Chr1:60235443-60235462 | None:intergenic | 15.0% |
| !!! | AAAATAACTTGTGTTAAAAT+GGG | + | Chr1:60235261-60235280 | None:intergenic | 15.0% |
| !! | AAAAACAGCAGATTATAAAA+AGG | + | Chr1:60235579-60235598 | None:intergenic | 20.0% |
| !! | AAATATTCCTTGATTATTCT+GGG | - | Chr1:60235226-60235245 | MsG0180003302.01.T01:three_prime_UTR | 20.0% |
| !! | ATTTATCAAATTTAGTTGAG+AGG | - | Chr1:60236080-60236099 | MsG0180003302.01.T01:intron | 20.0% |
| !!! | AGTTGTTTCCTTATTAAATT+GGG | - | Chr1:60235507-60235526 | MsG0180003302.01.T01:CDS | 20.0% |
| !!! | GAAAATAACTTGTGTTAAAA+TGG | + | Chr1:60235262-60235281 | None:intergenic | 20.0% |
| !!! | TAGTTGTTTCCTTATTAAAT+TGG | - | Chr1:60235506-60235525 | MsG0180003302.01.T01:CDS | 20.0% |
| !!! | TTTTTTTCTTCTTTTTGTTG+TGG | - | Chr1:60235449-60235468 | MsG0180003302.01.T01:CDS | 20.0% |
| ! | GAAATATTCCTTGATTATTC+TGG | - | Chr1:60235225-60235244 | MsG0180003302.01.T01:three_prime_UTR | 25.0% |
| ! | TGACACAATTATGTAATGTT+TGG | + | Chr1:60235289-60235308 | None:intergenic | 25.0% |
| !! | AAAATTTTGTTGAGGAACTT+CGG | - | Chr1:60235869-60235888 | MsG0180003302.01.T01:intron | 25.0% |
| !! | TCAAAAAAGATATTTTGCTG+TGG | - | Chr1:60236134-60236153 | MsG0180003302.01.T01:CDS | 25.0% |
| GAAATTATCTCACGTAACTT+AGG | + | Chr1:60235983-60236002 | None:intergenic | 30.0% | |
| GTCTAGGCAATAATATAACA+AGG | + | Chr1:60235538-60235557 | None:intergenic | 30.0% | |
| TTCAATACCCAGAATAATCA+AGG | + | Chr1:60235236-60235255 | None:intergenic | 30.0% | |
| TTTACACAGATAAACCACAA+CGG | + | Chr1:60236202-60236221 | None:intergenic | 30.0% | |
| ! | CCTCAACAAAATTTTCTCTA+GGG | + | Chr1:60235864-60235883 | None:intergenic | 30.0% |
| ! | TCCTCAACAAAATTTTCTCT+AGG | + | Chr1:60235865-60235884 | None:intergenic | 30.0% |
| !! | TTCTTTTTGTTGTGGTGTTT+TGG | - | Chr1:60235457-60235476 | MsG0180003302.01.T01:CDS | 30.0% |
| !!! | AATCTGCTGTTTTTGTTAGA+TGG | - | Chr1:60235585-60235604 | MsG0180003302.01.T01:CDS | 30.0% |
| AACTGTTAGTTCATCTGTCT+AGG | + | Chr1:60235554-60235573 | None:intergenic | 35.0% | |
| AAGTCCTAGTGAGCATATTA+GGG | - | Chr1:60235626-60235645 | MsG0180003302.01.T01:CDS | 35.0% | |
| AGAGTACGACAAACAATGAA+CGG | + | Chr1:60236015-60236034 | None:intergenic | 35.0% | |
| AGGACGTTCCCAATTTAATA+AGG | + | Chr1:60235518-60235537 | None:intergenic | 35.0% | |
| CTAAAATAACTGTTCCGTTG+TGG | - | Chr1:60236185-60236204 | MsG0180003302.01.T01:CDS | 35.0% | |
| GGAGTAGACTAATTGAACTT+TGG | - | Chr1:60236155-60236174 | MsG0180003302.01.T01:CDS | 35.0% | |
| TATCAAGCATTATGATCACC+TGG | + | Chr1:60235172-60235191 | None:intergenic | 35.0% | |
| TATCTATCTGATGGAGGATA+TGG | + | Chr1:60235328-60235347 | None:intergenic | 35.0% | |
| TGGAGTTAAAGCAGAATTCT+TGG | - | Chr1:60235696-60235715 | MsG0180003302.01.T01:intron | 35.0% | |
| ! | CCCTAGAGAAAATTTTGTTG+AGG | - | Chr1:60235861-60235880 | MsG0180003302.01.T01:intron | 35.0% |
| ! | TACTCTAGTTGAAGGAGTAT+AGG | - | Chr1:60236029-60236048 | MsG0180003302.01.T01:intron | 35.0% |
| !! | CACAACGGAACAGTTATTTT+AGG | + | Chr1:60236187-60236206 | None:intergenic | 35.0% |
| !! | GCGTTTTCACAATGATAATG+CGG | - | Chr1:60235954-60235973 | MsG0180003302.01.T01:intron | 35.0% |
| !!! | ACGGAACAGTTATTTTAGGT+TGG | + | Chr1:60236183-60236202 | None:intergenic | 35.0% |
| AAGTAGGATGCTACAAACAC+CGG | + | Chr1:60235916-60235935 | None:intergenic | 40.0% | |
| ATCCCTTGGATGATACTTGT+TGG | - | Chr1:60235766-60235785 | MsG0180003302.01.T01:intron | 40.0% | |
| ATGACTTGATTCATCACCAC+GGG | - | Chr1:60235377-60235396 | MsG0180003302.01.T01:CDS | 40.0% | |
| CACCAACAAGTATCATCCAA+GGG | + | Chr1:60235771-60235790 | None:intergenic | 40.0% | |
| CAGACAGTATAAGTAACAGC+AGG | + | Chr1:60235353-60235372 | None:intergenic | 40.0% | |
| CATTCCCTAATATGCTCACT+AGG | + | Chr1:60235633-60235652 | None:intergenic | 40.0% | |
| CGAAAGAATCAAGAATCCCT+TGG | - | Chr1:60235752-60235771 | MsG0180003302.01.T01:intron | 40.0% | |
| CTTCTGTTGTTGCTCCATTA+TGG | + | Chr1:60235141-60235160 | None:intergenic | 40.0% | |
| GAAGTCCTAGTGAGCATATT+AGG | - | Chr1:60235625-60235644 | MsG0180003302.01.T01:CDS | 40.0% | |
| GATAACCTGATAGGGATGTT+TGG | - | Chr1:60235062-60235081 | MsG0180003302.01.T01:three_prime_UTR | 40.0% | |
| GATGACTTGATTCATCACCA+CGG | - | Chr1:60235376-60235395 | MsG0180003302.01.T01:CDS | 40.0% | |
| GCAGGAAATAAAAGAAGGCA+CGG | - | Chr1:60235792-60235811 | MsG0180003302.01.T01:intron | 40.0% | |
| GGGATGTATCTAATCACTAG+GGG | - | Chr1:60235398-60235417 | MsG0180003302.01.T01:CDS | 40.0% | |
| GGGGATGTATCTAATCACTA+GGG | - | Chr1:60235397-60235416 | MsG0180003302.01.T01:CDS | 40.0% | |
| GGTGAGCAGGAAATAAAAGA+AGG | - | Chr1:60235787-60235806 | MsG0180003302.01.T01:intron | 40.0% | |
| GTCGATACGATAACCTGATA+GGG | - | Chr1:60235054-60235073 | MsG0180003302.01.T01:three_prime_UTR | 40.0% | |
| GTTTGTCGTACTCTAGTTGA+AGG | - | Chr1:60236021-60236040 | MsG0180003302.01.T01:intron | 40.0% | |
| TCACCAACAAGTATCATCCA+AGG | + | Chr1:60235772-60235791 | None:intergenic | 40.0% | |
| TCTGATGGAGGATATGGTTT+AGG | + | Chr1:60235322-60235341 | None:intergenic | 40.0% | |
| TTGTTGAGGAACTTCGGAAA+CGG | - | Chr1:60235875-60235894 | MsG0180003302.01.T01:intron | 40.0% | |
| ! | CATAATGGAGCAACAACAGA+AGG | - | Chr1:60235139-60235158 | MsG0180003302.01.T01:three_prime_UTR | 40.0% |
| ! | CTGCTGTTACTTATACTGTC+TGG | - | Chr1:60235351-60235370 | MsG0180003302.01.T01:exon | 40.0% |
| ! | TTACATCATTACCTGACTCG+AGG | + | Chr1:60235831-60235850 | None:intergenic | 40.0% |
| ! | TTCGCATAGTCAAAGTGCTT+TGG | + | Chr1:60235736-60235755 | None:intergenic | 40.0% |
| !! | CGAGAGAGTATTTGCCATAA+TGG | - | Chr1:60235124-60235143 | MsG0180003302.01.T01:three_prime_UTR | 40.0% |
| ACAACAGAAGGATCAGAACC+AGG | - | Chr1:60235151-60235170 | MsG0180003302.01.T01:three_prime_UTR | 45.0% | |
| ACGGTTAAACCCATAAGTCC+CGG | - | Chr1:60235894-60235913 | MsG0180003302.01.T01:intron | 45.0% | |
| ACTAGGACTTCTGTCTTGGT+TGG | + | Chr1:60235616-60235635 | None:intergenic | 45.0% | |
| ACTCCAAACACATGCCAAGT+AGG | + | Chr1:60235932-60235951 | None:intergenic | 45.0% | |
| AGTAGGATGCTACAAACACC+GGG | + | Chr1:60235915-60235934 | None:intergenic | 45.0% | |
| AGTGATTAGATACATCCCCG+TGG | + | Chr1:60235396-60235415 | None:intergenic | 45.0% | |
| CATCCTACTTGGCATGTGTT+TGG | - | Chr1:60235926-60235945 | MsG0180003302.01.T01:intron | 45.0% | |
| CGGGGATGTATCTAATCACT+AGG | - | Chr1:60235396-60235415 | MsG0180003302.01.T01:CDS | 45.0% | |
| CTACAAACACCGGGACTTAT+GGG | + | Chr1:60235906-60235925 | None:intergenic | 45.0% | |
| GGGAATGATGTAACACTAGC+TGG | - | Chr1:60235646-60235665 | MsG0180003302.01.T01:intron | 45.0% | |
| GGTCGATACGATAACCTGAT+AGG | - | Chr1:60235053-60235072 | MsG0180003302.01.T01:three_prime_UTR | 45.0% | |
| GGTGTTTGTAGCATCCTACT+TGG | - | Chr1:60235915-60235934 | MsG0180003302.01.T01:intron | 45.0% | |
| GTACGACAAACAATGAACGG+TGG | + | Chr1:60236012-60236031 | None:intergenic | 45.0% | |
| TCGAACCAAACATCCCTATC+AGG | + | Chr1:60235070-60235089 | None:intergenic | 45.0% | |
| TGACTTGATTCATCACCACG+GGG | - | Chr1:60235378-60235397 | MsG0180003302.01.T01:CDS | 45.0% | |
| ! | GATGATACTTGTTGGTGAGC+AGG | - | Chr1:60235774-60235793 | MsG0180003302.01.T01:intron | 45.0% |
| !! | CAGCAGGAGTATCTATCTGA+TGG | + | Chr1:60235337-60235356 | None:intergenic | 45.0% |
| !! | CAGGAGTATCTATCTGATGG+AGG | + | Chr1:60235334-60235353 | None:intergenic | 45.0% |
| AGAGCTAGCTGGTGAACTGT+GGG | - | Chr1:60235669-60235688 | MsG0180003302.01.T01:intron | 50.0% | |
| CAACTGAAAAGCCTCGAGTC+AGG | - | Chr1:60235817-60235836 | MsG0180003302.01.T01:intron | 50.0% | |
| GCTACAAACACCGGGACTTA+TGG | + | Chr1:60235907-60235926 | None:intergenic | 50.0% | |
| GCTCACTAGGACTTCTGTCT+TGG | + | Chr1:60235620-60235639 | None:intergenic | 50.0% | |
| TCGAAGCAAGTTCCAGCAGT+TGG | - | Chr1:60235086-60235105 | MsG0180003302.01.T01:three_prime_UTR | 50.0% | |
| ! | CCAGCAGTTGGTGTAAGTCT+GGG | - | Chr1:60235098-60235117 | MsG0180003302.01.T01:three_prime_UTR | 50.0% |
| ! | GTTGGTTCAATTGCTGCTGG+TGG | - | Chr1:60235032-60235051 | MsG0180003302.01.T01:three_prime_UTR | 50.0% |
| ! | TCCAGCAGTTGGTGTAAGTC+TGG | - | Chr1:60235097-60235116 | MsG0180003302.01.T01:three_prime_UTR | 50.0% |
| !! | CAGGTTGGTTCAATTGCTGC+TGG | - | Chr1:60235029-60235048 | MsG0180003302.01.T01:three_prime_UTR | 50.0% |
| ACACTAGCTGGAGAGCTAGC+TGG | - | Chr1:60235658-60235677 | MsG0180003302.01.T01:intron | 55.0% | |
| CCCAGACTTACACCAACTGC+TGG | + | Chr1:60235101-60235120 | None:intergenic | 55.0% | |
| GAGAGCTAGCTGGTGAACTG+TGG | - | Chr1:60235668-60235687 | MsG0180003302.01.T01:intron | 55.0% | |
| GCTGGTGAACTGTGGGATGC+TGG | - | Chr1:60235676-60235695 | MsG0180003302.01.T01:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr1 | gene | 60235017 | 60236247 | 60235017 | ID=MsG0180003302.01;Name=MsG0180003302.01 |
| Chr1 | mRNA | 60235017 | 60236247 | 60235017 | ID=MsG0180003302.01.T01;Parent=MsG0180003302.01;Name=MsG0180003302.01.T01;_AED=0.48;_eAED=0.48;_QI=0|1|0.5|1|1|1|2|338|153 |
| Chr1 | exon | 60235017 | 60235660 | 60235017 | ID=MsG0180003302.01.T01:exon:4033;Parent=MsG0180003302.01.T01 |
| Chr1 | exon | 60236092 | 60236247 | 60236092 | ID=MsG0180003302.01.T01:exon:4032;Parent=MsG0180003302.01.T01 |
| Chr1 | CDS | 60236092 | 60236247 | 60236092 | ID=MsG0180003302.01.T01:cds;Parent=MsG0180003302.01.T01 |
| Chr1 | CDS | 60235355 | 60235660 | 60235355 | ID=MsG0180003302.01.T01:cds;Parent=MsG0180003302.01.T01 |
| Chr1 | three_prime_UTR | 60235017 | 60235354 | 60235017 | ID=MsG0180003302.01.T01:three_prime_utr;Parent=MsG0180003302.01.T01 |
| Gene Sequence |
| Protein sequence |
