Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046464.01.T01 | XP_024638705.1 | 91.228 | 57 | 5 | 0 | 1 | 57 | 34 | 90 | 1.32E-29 | 109 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046464.01.T01 | A0A396IFT9 | 91.228 | 57 | 5 | 0 | 1 | 57 | 34 | 90 | 6.31e-30 | 109 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MsG0080048900.01 | MsG0880046464.01 | -0.808628 | 2.820863e-50 | 1.620825e-47 |
| MsG0080048929.01 | MsG0880046464.01 | -0.805099 | 1.571685e-49 | 8.243053e-47 |
| MsG0180000352.01 | MsG0880046464.01 | -0.807421 | 5.095558e-50 | 2.836955e-47 |
| MsG0180001113.01 | MsG0880046464.01 | -0.809073 | 2.266173e-50 | 1.317626e-47 |
| MsG0180001614.01 | MsG0880046464.01 | -0.818672 | 1.734507e-52 | 1.306759e-49 |
| MsG0880044548.01 | MsG0880046464.01 | -0.806083 | 9.773089e-50 | 5.256698e-47 |
| MsG0880044595.01 | MsG0880046464.01 | -0.818515 | 1.883152e-52 | 1.412631e-49 |
| MsG0880045324.01 | MsG0880046464.01 | -0.810687 | 1.018230e-50 | 6.178803e-48 |
| MsG0880045697.01 | MsG0880046464.01 | -0.810088 | 1.371638e-50 | 8.192097e-48 |
| MsG0880046040.01 | MsG0880046464.01 | -0.819194 | 1.320260e-52 | 1.009066e-49 |
| MsG0880046151.01 | MsG0880046464.01 | -0.809374 | 1.953309e-50 | 1.144910e-47 |
| MsG0180002809.01 | MsG0880046464.01 | -0.815991 | 6.961219e-52 | 4.872644e-49 |
| MsG0180002982.01 | MsG0880046464.01 | -0.803761 | 2.986906e-49 | 1.513528e-46 |
| MsG0180003114.01 | MsG0880046464.01 | -0.820569 | 6.400403e-53 | 5.082472e-50 |
| MsG0180003453.01 | MsG0880046464.01 | -0.804579 | 2.019112e-49 | 1.044830e-46 |
| MsG0180004580.01 | MsG0880046464.01 | -0.831559 | 1.558601e-55 | 1.697552e-52 |
| MsG0180004581.01 | MsG0880046464.01 | -0.822531 | 2.253590e-53 | 1.891355e-50 |
| MsG0180004634.01 | MsG0880046464.01 | -0.805942 | 1.046415e-49 | 5.608334e-47 |
| MsG0180004852.01 | MsG0880046464.01 | -0.806088 | 9.749261e-50 | 5.244558e-47 |
| MsG0780040649.01 | MsG0880046464.01 | -0.816053 | 6.743825e-52 | 4.728761e-49 |
| MsG0780040884.01 | MsG0880046464.01 | -0.806636 | 7.472949e-50 | 4.076394e-47 |
| MsG0780041035.01 | MsG0880046464.01 | -0.822122 | 2.803831e-53 | 2.325718e-50 |
| MsG0780041492.01 | MsG0880046464.01 | -0.806112 | 9.636858e-50 | 5.187256e-47 |
| MsG0880043343.01 | MsG0880046464.01 | -0.801226 | 9.948246e-49 | 4.725667e-46 |
| MsG0280011162.01 | MsG0880046464.01 | -0.812246 | 4.669005e-51 | 2.953453e-48 |
| MsG0380012157.01 | MsG0880046464.01 | -0.821670 | 3.569311e-53 | 2.922794e-50 |
| MsG0680031449.01 | MsG0880046464.01 | -0.803498 | 3.387138e-49 | 1.704787e-46 |
| MsG0680032055.01 | MsG0880046464.01 | -0.801963 | 7.026918e-49 | 3.400550e-46 |
| MsG0680032160.01 | MsG0880046464.01 | -0.801994 | 6.925343e-49 | 3.354104e-46 |
| MsG0680032840.01 | MsG0880046464.01 | -0.808483 | 3.029048e-50 | 1.734025e-47 |
| MsG0480019376.01 | MsG0880046464.01 | -0.806429 | 8.261759e-50 | 4.483250e-47 |
| MsG0480019485.01 | MsG0880046464.01 | -0.806162 | 9.404388e-50 | 5.068807e-47 |
| MsG0480021039.01 | MsG0880046464.01 | -0.803525 | 3.344640e-49 | 1.684590e-46 |
| MsG0480022466.01 | MsG0880046464.01 | -0.801428 | 9.047718e-49 | 4.319677e-46 |
| MsG0480022584.01 | MsG0880046464.01 | -0.841515 | 4.535000e-58 | 6.679691e-55 |
| MsG0480022622.01 | MsG0880046464.01 | -0.819862 | 9.291544e-53 | 7.235407e-50 |
| MsG0480022665.01 | MsG0880046464.01 | -0.812321 | 4.496991e-51 | 2.850309e-48 |
| MsG0480023211.01 | MsG0880046464.01 | -0.820098 | 8.209028e-53 | 6.435180e-50 |
| MsG0480023469.01 | MsG0880046464.01 | -0.811516 | 6.734386e-51 | 4.177296e-48 |
| MsG0480023483.01 | MsG0880046464.01 | -0.809423 | 1.906476e-50 | 1.118922e-47 |
| MsG0480023502.01 | MsG0880046464.01 | -0.809711 | 1.653039e-50 | 9.776459e-48 |
| MsG0480023705.01 | MsG0880046464.01 | -0.827895 | 1.214926e-54 | 1.188611e-51 |
| MsG0480023933.01 | MsG0880046464.01 | -0.808667 | 2.767206e-50 | 1.591649e-47 |
| MsG0580025447.01 | MsG0880046464.01 | -0.815891 | 7.326383e-52 | 5.113951e-49 |
| MsG0580025513.01 | MsG0880046464.01 | -0.800222 | 1.594467e-48 | 7.383680e-46 |
| MsG0380015719.01 | MsG0880046464.01 | -0.803752 | 2.999876e-49 | 1.519747e-46 |
| MsG0380016166.01 | MsG0880046464.01 | -0.819005 | 1.457620e-52 | 1.108412e-49 |
| MsG0380016229.01 | MsG0880046464.01 | -0.803234 | 3.842574e-49 | 1.920833e-46 |
| MsG0380017472.01 | MsG0880046464.01 | -0.802668 | 5.029070e-49 | 2.477915e-46 |
| MsG0380017474.01 | MsG0880046464.01 | -0.801328 | 9.482365e-49 | 4.515914e-46 |
| MsG0380017647.01 | MsG0880046464.01 | -0.831466 | 1.643186e-55 | 1.784663e-52 |
| MsG0480018196.01 | MsG0880046464.01 | -0.808787 | 2.608973e-50 | 1.505335e-47 |
| MsG0280007079.01 | MsG0880046464.01 | -0.837943 | 3.856451e-57 | 5.088004e-54 |
| MsG0280009287.01 | MsG0880046464.01 | -0.810280 | 1.246519e-50 | 7.482387e-48 |
| MsG0780036909.01 | MsG0880046464.01 | -0.801751 | 7.766213e-49 | 3.738190e-46 |
| MsG0780037734.01 | MsG0880046464.01 | -0.809154 | 2.176490e-50 | 1.268265e-47 |
| MsG0780040158.01 | MsG0880046464.01 | -0.822966 | 1.785253e-53 | 1.516851e-50 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MsG0880046464.01.T01 | MTR_4g108700 | 91.228 | 57 | 5 | 0 | 1 | 57 | 25 | 81 | 7.57e-33 | 107 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 35 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCAACTTTGAGGTCTTAAA+TGG | 0.146569 | 8:+73671524 | None:intergenic |
| TTGTTTATGTATGGGATCTT+AGG | 0.200401 | 8:-73670156 | MsG0880046464.01.T01:three_prime_UTR |
| TCCATCCTCTCATTAATTCT+TGG | 0.236814 | 8:+73670373 | None:intergenic |
| CTCTCATTAATTCTTGGCTT+TGG | 0.279055 | 8:+73670379 | None:intergenic |
| AATTAATGAGAGGATGGATT+TGG | 0.333806 | 8:-73670368 | MsG0880046464.01.T01:CDS |
| AAATCCCCATTGTTTATGTA+TGG | 0.334660 | 8:-73670165 | MsG0880046464.01.T01:three_prime_UTR |
| TCTCCATTGTGGATGCTCTT+AGG | 0.355519 | 8:-73671499 | MsG0880046464.01.T01:five_prime_UTR |
| CTCAATGATTATGCACCATC+TGG | 0.362640 | 8:-73670343 | MsG0880046464.01.T01:CDS |
| AGAGGAACTAACATTTAATC+AGG | 0.392881 | 8:+73670276 | None:intergenic |
| CAACTTGGACATCTTGCATA+AGG | 0.415467 | 8:+73670572 | None:intergenic |
| CCGGAGTAATTAGGTCAACT+TGG | 0.423783 | 8:+73670557 | None:intergenic |
| AATCAGGTTACACACCATTA+CGG | 0.442297 | 8:+73670292 | None:intergenic |
| AGATCCCATACATAAACAAT+GGG | 0.456560 | 8:+73670160 | None:intergenic |
| ACACACCATTACGGTGCTCT+TGG | 0.466740 | 8:+73670301 | None:intergenic |
| TATGCACCATCTGGGGCAAA+TGG | 0.473723 | 8:-73670334 | MsG0880046464.01.T01:CDS |
| AATGGAGACCCTCAACTTTG+AGG | 0.476203 | 8:+73671514 | None:intergenic |
| ATCATTGAAATTCTAGTACA+TGG | 0.502495 | 8:+73670098 | None:intergenic |
| ATTTAAGACCTCAAAGTTGA+GGG | 0.509562 | 8:-73671522 | MsG0880046464.01.T01:five_prime_UTR |
| AATCCCCATTGTTTATGTAT+GGG | 0.510722 | 8:-73670164 | MsG0880046464.01.T01:three_prime_UTR |
| TCAATGATTATGCACCATCT+GGG | 0.530735 | 8:-73670342 | MsG0880046464.01.T01:CDS |
| ATTTATGTATGATGAAAGAA+AGG | 0.544291 | 8:-73670208 | MsG0880046464.01.T01:three_prime_UTR |
| TCAACTTTGAGGTCTTAAAT+GGG | 0.544504 | 8:+73671525 | None:intergenic |
| GCCAAGAATTAATGAGAGGA+TGG | 0.546052 | 8:-73670374 | MsG0880046464.01.T01:CDS |
| AAGATCCCATACATAAACAA+TGG | 0.554557 | 8:+73670159 | None:intergenic |
| TACTCCGGAAAATACCCCTC+AGG | 0.579089 | 8:-73670542 | MsG0880046464.01.T01:intron |
| ACACTCCAAGAGCACCGTAA+TGG | 0.580515 | 8:-73670306 | MsG0880046464.01.T01:exon |
| CATTTAAGACCTCAAAGTTG+AGG | 0.586490 | 8:-73671523 | MsG0880046464.01.T01:five_prime_UTR |
| CCAAGTTGACCTAATTACTC+CGG | 0.594810 | 8:-73670557 | MsG0880046464.01.T01:CDS |
| CAAAGCCAAGAATTAATGAG+AGG | 0.628754 | 8:-73670378 | MsG0880046464.01.T01:CDS |
| TGACGACCATTTGCCCCAGA+TGG | 0.633835 | 8:+73670328 | None:intergenic |
| CAATGATTATGCACCATCTG+GGG | 0.636327 | 8:-73670341 | MsG0880046464.01.T01:CDS |
| AAAGTTGAGGGTCTCCATTG+TGG | 0.650229 | 8:-73671510 | MsG0880046464.01.T01:five_prime_UTR |
| TTTCCTAAGAGCATCCACAA+TGG | 0.676299 | 8:+73671496 | None:intergenic |
| GATCCCATACATAAACAATG+GGG | 0.744720 | 8:+73670161 | None:intergenic |
| AGTATCAAACTGTACCTGAG+GGG | 0.746962 | 8:+73670528 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATATGAAATACTATTAATT+TGG | - | Chr8:73670421-73670440 | MsG0880046464.01.T01:intron | 10.0% |
| !! | ATATGAAATACTATTAATTT+GGG | - | Chr8:73670422-73670441 | MsG0880046464.01.T01:intron | 10.0% |
| !!! | ATTAATAGTATTTCATATTT+TGG | + | Chr8:73670420-73670439 | None:intergenic | 10.0% |
| !! | AAAAAAGTTAGTTGAAACTT+TGG | - | Chr8:73670388-73670407 | MsG0880046464.01.T01:CDS | 20.0% |
| !! | AACAAGATTATATATGTTAC+AGG | - | Chr8:73671183-73671202 | MsG0880046464.01.T01:intron | 20.0% |
| !! | ATTTATGTATGATGAAAGAA+AGG | - | Chr8:73671409-73671428 | MsG0880046464.01.T01:intron | 20.0% |
| !! | CTTAATTTACATTATTGTTG+TGG | - | Chr8:73670262-73670281 | MsG0880046464.01.T01:three_prime_UTR | 20.0% |
| !!! | ATATATGAGTTTTATTGTAG+AGG | - | Chr8:73671385-73671404 | MsG0880046464.01.T01:intron | 20.0% |
| !!! | CTTAATATTGTTTTACATAG+AGG | + | Chr8:73671362-73671381 | None:intergenic | 20.0% |
| !!! | TGGTATATTTTAAGTCAATA+TGG | + | Chr8:73670199-73670218 | None:intergenic | 20.0% |
| !!! | TTTGTGATGTTTTTTTAACA+TGG | + | Chr8:73670590-73670609 | None:intergenic | 20.0% |
| ! | AAAGTTTATTTACCAAAGTG+TGG | - | Chr8:73670476-73670495 | MsG0880046464.01.T01:intron | 25.0% |
| ! | ATAAATTGAGAACTAGCATA+TGG | - | Chr8:73670626-73670645 | MsG0880046464.01.T01:intron | 25.0% |
| ! | ATCATTGAAATTCTAGTACA+TGG | + | Chr8:73671522-73671541 | None:intergenic | 25.0% |
| ! | TAAATTGAGAACTAGCATAT+GGG | - | Chr8:73670627-73670646 | MsG0880046464.01.T01:intron | 25.0% |
| ! | TACGTCTATATTTGAATTGA+CGG | - | Chr8:73670829-73670848 | MsG0880046464.01.T01:intron | 25.0% |
| ! | TAGAAGAATTTACTTGTAAC+TGG | + | Chr8:73670776-73670795 | None:intergenic | 25.0% |
| ! | TTTAGGTGGACATAAAATTA+TGG | + | Chr8:73670219-73670238 | None:intergenic | 25.0% |
| !! | AGTCTTAGTCTTCTTATATA+TGG | - | Chr8:73670994-73671013 | MsG0880046464.01.T01:intron | 25.0% |
| !! | CACACAATTCTGATATTTTA+TGG | + | Chr8:73670355-73670374 | None:intergenic | 25.0% |
| AAATCCCCATTGTTTATGTA+TGG | - | Chr8:73671452-73671471 | MsG0880046464.01.T01:intron | 30.0% | |
| AAGATCCCATACATAAACAA+TGG | + | Chr8:73671461-73671480 | None:intergenic | 30.0% | |
| AATCCCCATTGTTTATGTAT+GGG | - | Chr8:73671453-73671472 | MsG0880046464.01.T01:intron | 30.0% | |
| AGAGGAACTAACATTTAATC+AGG | + | Chr8:73671344-73671363 | None:intergenic | 30.0% | |
| AGATCCCATACATAAACAAT+GGG | + | Chr8:73671460-73671479 | None:intergenic | 30.0% | |
| ATGGTATGTTTGTATTAAGC+AGG | - | Chr8:73671013-73671032 | MsG0880046464.01.T01:intron | 30.0% | |
| ATTTGAATTGACGGTGAATT+TGG | - | Chr8:73670838-73670857 | MsG0880046464.01.T01:intron | 30.0% | |
| CGATGAATTTCATGAAATCA+TGG | + | Chr8:73670936-73670955 | None:intergenic | 30.0% | |
| GGAAAATTACATGCATGTTT+CGG | + | Chr8:73670963-73670982 | None:intergenic | 30.0% | |
| TATTGAGAAAAACTTGCACT+TGG | - | Chr8:73671210-73671229 | MsG0880046464.01.T01:intron | 30.0% | |
| TGAATTTCATGAAATCATGG+TGG | + | Chr8:73670933-73670952 | None:intergenic | 30.0% | |
| TGCTATCAACTTTATGACTT+TGG | - | Chr8:73670530-73670549 | MsG0880046464.01.T01:intron | 30.0% | |
| TTAAGCATAGAAGATGTGAA+AGG | + | Chr8:73670745-73670764 | None:intergenic | 30.0% | |
| TTGTTTATGTATGGGATCTT+AGG | - | Chr8:73671461-73671480 | MsG0880046464.01.T01:intron | 30.0% | |
| ! | AATTAATGAGAGGATGGATT+TGG | - | Chr8:73671249-73671268 | MsG0880046464.01.T01:intron | 30.0% |
| ! | ATTTAAGACCTCAAAGTTGA+GGG | - | Chr8:73670095-73670114 | MsG0880046464.01.T01:three_prime_UTR | 30.0% |
| !! | ATTAATTTGGGTTTTCACAC+AGG | - | Chr8:73670434-73670453 | MsG0880046464.01.T01:intron | 30.0% |
| !! | TCAACTTTGAGGTCTTAAAT+GGG | + | Chr8:73670095-73670114 | None:intergenic | 30.0% |
| !! | TTTTAAGTCAATATGGAGTG+CGG | + | Chr8:73670192-73670211 | None:intergenic | 30.0% |
| AACATGGAATGTCGATATGA+TGG | + | Chr8:73670574-73670593 | None:intergenic | 35.0% | |
| AATCAGGTTACACACCATTA+CGG | + | Chr8:73671328-73671347 | None:intergenic | 35.0% | |
| ACTTTCTCTGCACTACAATA+AGG | - | Chr8:73670238-73670257 | MsG0880046464.01.T01:three_prime_UTR | 35.0% | |
| ATAGCAACCCATCATTTCTT+GGG | + | Chr8:73670516-73670535 | None:intergenic | 35.0% | |
| ATGAAAGTGGAAAGATGACA+AGG | + | Chr8:73670168-73670187 | None:intergenic | 35.0% | |
| CAAAGCCAAGAATTAATGAG+AGG | - | Chr8:73671239-73671258 | MsG0880046464.01.T01:intron | 35.0% | |
| CGTTTATTCGTGATTCTTCT+TGG | - | Chr8:73670719-73670738 | MsG0880046464.01.T01:intron | 35.0% | |
| CTCTCATTAATTCTTGGCTT+TGG | + | Chr8:73671241-73671260 | None:intergenic | 35.0% | |
| GACTAAGACTAAGAAGATGA+AGG | + | Chr8:73670984-73671003 | None:intergenic | 35.0% | |
| GATCCCATACATAAACAATG+GGG | + | Chr8:73671459-73671478 | None:intergenic | 35.0% | |
| TCAATGATTATGCACCATCT+GGG | - | Chr8:73671275-73671294 | MsG0880046464.01.T01:intron | 35.0% | |
| TCCATCCTCTCATTAATTCT+TGG | + | Chr8:73671247-73671266 | None:intergenic | 35.0% | |
| TTGTAGTGCAGAGAAAGTTT+AGG | + | Chr8:73670236-73670255 | None:intergenic | 35.0% | |
| TTTGTCTCCCAAGAAATGAT+GGG | - | Chr8:73670506-73670525 | MsG0880046464.01.T01:intron | 35.0% | |
| ! | CATTTAAGACCTCAAAGTTG+AGG | - | Chr8:73670094-73670113 | MsG0880046464.01.T01:three_prime_UTR | 35.0% |
| !! | CTCAACTTTGAGGTCTTAAA+TGG | + | Chr8:73670096-73670115 | None:intergenic | 35.0% |
| ACAAACGTGTTTCCACACTT+TGG | + | Chr8:73670491-73670510 | None:intergenic | 40.0% | |
| AGTATCAAACTGTACCTGAG+GGG | + | Chr8:73671092-73671111 | None:intergenic | 40.0% | |
| ATTGAGAACTAGCATATGGG+AGG | - | Chr8:73670630-73670649 | MsG0880046464.01.T01:intron | 40.0% | |
| CAACTTGGACATCTTGCATA+AGG | + | Chr8:73671048-73671067 | None:intergenic | 40.0% | |
| CAATGATTATGCACCATCTG+GGG | - | Chr8:73671276-73671295 | MsG0880046464.01.T01:intron | 40.0% | |
| CTCAATGATTATGCACCATC+TGG | - | Chr8:73671274-73671293 | MsG0880046464.01.T01:intron | 40.0% | |
| GAGTATCAAACTGTACCTGA+GGG | + | Chr8:73671093-73671112 | None:intergenic | 40.0% | |
| GATAGCAACCCATCATTTCT+TGG | + | Chr8:73670517-73670536 | None:intergenic | 40.0% | |
| GCCAAGAATTAATGAGAGGA+TGG | - | Chr8:73671243-73671262 | MsG0880046464.01.T01:intron | 40.0% | |
| GTTTGTCTCCCAAGAAATGA+TGG | - | Chr8:73670505-73670524 | MsG0880046464.01.T01:intron | 40.0% | |
| TAGTGCAGAGAAAGTTTAGG+TGG | + | Chr8:73670233-73670252 | None:intergenic | 40.0% | |
| TCTTCTCAGAAACAAGCTCT+AGG | + | Chr8:73670664-73670683 | None:intergenic | 40.0% | |
| TGAATTGACGGTGAATTTGG+TGG | - | Chr8:73670841-73670860 | MsG0880046464.01.T01:intron | 40.0% | |
| ! | AGAGTATCAAACTGTACCTG+AGG | + | Chr8:73671094-73671113 | None:intergenic | 40.0% |
| ! | CCAAGTTGACCTAATTACTC+CGG | - | Chr8:73671060-73671079 | MsG0880046464.01.T01:intron | 40.0% |
| ! | GGGTATTTTCCGGAGTAATT+AGG | + | Chr8:73671072-73671091 | None:intergenic | 40.0% |
| !! | TTTCCTAAGAGCATCCACAA+TGG | + | Chr8:73670124-73670143 | None:intergenic | 40.0% |
| AAAGTTGAGGGTCTCCATTG+TGG | - | Chr8:73670107-73670126 | MsG0880046464.01.T01:three_prime_UTR | 45.0% | |
| AATGGAGACCCTCAACTTTG+AGG | + | Chr8:73670106-73670125 | None:intergenic | 45.0% | |
| CCGGAGTAATTAGGTCAACT+TGG | + | Chr8:73671063-73671082 | None:intergenic | 45.0% | |
| TATGGAGTGCGGTATGAAAG+TGG | + | Chr8:73670181-73670200 | None:intergenic | 45.0% | |
| TCTCCATTGTGGATGCTCTT+AGG | - | Chr8:73670118-73670137 | MsG0880046464.01.T01:three_prime_UTR | 45.0% | |
| !!! | TGTACCTGAGGGGTATTTTC+CGG | + | Chr8:73671082-73671101 | None:intergenic | 45.0% |
| ACACACCATTACGGTGCTCT+TGG | + | Chr8:73671319-73671338 | None:intergenic | 50.0% | |
| TACTCCGGAAAATACCCCTC+AGG | - | Chr8:73671075-73671094 | MsG0880046464.01.T01:intron | 50.0% | |
| ! | TATGCACCATCTGGGGCAAA+TGG | - | Chr8:73671283-73671302 | MsG0880046464.01.T01:intron | 50.0% |
| !! | ACACTCCAAGAGCACCGTAA+TGG | - | Chr8:73671311-73671330 | MsG0880046464.01.T01:intron | 50.0% |
| CATTGCAGTGCAGGAATGGC+AGG | - | Chr8:73670686-73670705 | MsG0880046464.01.T01:intron | 55.0% | |
| CTGCCATTCCTGCACTGCAA+TGG | + | Chr8:73670688-73670707 | None:intergenic | 55.0% | |
| GAGAAGAGCCATTGCAGTGC+AGG | - | Chr8:73670677-73670696 | MsG0880046464.01.T01:intron | 55.0% | |
| GAGCCATTGCAGTGCAGGAA+TGG | - | Chr8:73670682-73670701 | MsG0880046464.01.T01:intron | 55.0% | |
| TGACGACCATTTGCCCCAGA+TGG | + | Chr8:73671292-73671311 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| Chr8 | gene | 73670084 | 73671555 | 73670084 | ID=MsG0880046464.01;Name=MsG0880046464.01 |
| Chr8 | mRNA | 73670084 | 73671555 | 73670084 | ID=MsG0880046464.01.T01;Parent=MsG0880046464.01;Name=MsG0880046464.01.T01;_AED=0.54;_eAED=0.54;_QI=99|0.5|0.66|0.66|0.5|0.66|3|225|57 |
| Chr8 | exon | 73670084 | 73670434 | 73670084 | ID=MsG0880046464.01.T01:exon:7992;Parent=MsG0880046464.01.T01 |
| Chr8 | exon | 73670543 | 73670604 | 73670543 | ID=MsG0880046464.01.T01:exon:7991;Parent=MsG0880046464.01.T01 |
| Chr8 | exon | 73671471 | 73671555 | 73671471 | ID=MsG0880046464.01.T01:exon:7990;Parent=MsG0880046464.01.T01 |
| Chr8 | five_prime_UTR | 73671471 | 73671555 | 73671471 | ID=MsG0880046464.01.T01:five_prime_utr;Parent=MsG0880046464.01.T01 |
| Chr8 | five_prime_UTR | 73670591 | 73670604 | 73670591 | ID=MsG0880046464.01.T01:five_prime_utr;Parent=MsG0880046464.01.T01 |
| Chr8 | CDS | 73670543 | 73670590 | 73670543 | ID=MsG0880046464.01.T01:cds;Parent=MsG0880046464.01.T01 |
| Chr8 | CDS | 73670309 | 73670434 | 73670309 | ID=MsG0880046464.01.T01:cds;Parent=MsG0880046464.01.T01 |
| Chr8 | three_prime_UTR | 73670084 | 73670308 | 73670084 | ID=MsG0880046464.01.T01:three_prime_utr;Parent=MsG0880046464.01.T01 |
| Gene Sequence |
| Protein sequence |
