AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880045324.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045324.01.T01 MTR_8g069825 75.455 110 20 2 1 109 163 266 6.36e-48 167
MsG0880045324.01.T01 MTR_8g069825 88.889 72 7 1 184 254 256 327 8.90e-37 137
MsG0880045324.01.T01 MTR_8g102850 50.459 109 47 2 2 109 141 243 1.14e-26 108
MsG0880045324.01.T01 MTR_8g102850 60.870 69 27 0 186 254 236 304 2.68e-24 102
MsG0880045324.01.T01 MTR_8g102850 50.459 109 47 2 2 109 141 243 1.17e-26 108
MsG0880045324.01.T01 MTR_8g102850 60.870 69 27 0 186 254 236 304 2.52e-24 102
MsG0880045324.01.T01 MTR_0194s0020 43.182 88 42 2 24 109 111 192 7.47e-16 75.5
MsG0880045324.01.T01 MTR_0194s0020 45.833 72 38 1 181 252 181 251 2.16e-14 71.2
MsG0880045324.01.T01 MTR_7g075885 53.125 64 30 0 191 254 232 295 7.75e-16 76.6
MsG0880045324.01.T01 MTR_7g075885 46.591 88 39 2 20 105 149 230 3.86e-14 72.0
MsG0880045324.01.T01 MTR_0194s0020 43.182 88 42 2 24 109 111 192 1.71e-15 75.1
MsG0880045324.01.T01 MTR_0194s0020 45.833 72 38 1 181 252 181 251 2.32e-14 71.6
MsG0880045324.01.T01 MTR_0194s0020 43.182 88 42 2 24 109 111 192 2.48e-15 74.7
MsG0880045324.01.T01 MTR_0194s0020 45.833 72 38 1 181 252 181 251 2.75e-14 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880045324.01.T01 AT1G23400 61.682 107 34 2 4 109 174 274 7.01e-37 137
MsG0880045324.01.T01 AT1G23400 79.710 69 14 0 186 254 267 335 8.13e-32 123
MsG0880045324.01.T01 AT2G20020 56.863 102 37 2 2 102 212 307 1.03e-25 106
MsG0880045324.01.T01 AT2G20020 66.667 63 21 0 191 253 312 374 3.13e-24 102
MsG0880045324.01.T01 AT5G54890 42.045 88 43 2 24 109 135 216 8.86e-15 73.6
MsG0880045324.01.T01 AT5G54890 38.571 70 43 0 183 252 206 275 1.88e-13 69.7
MsG0880045324.01.T01 AT4G31010 41.975 81 46 1 174 254 221 300 1.96e-14 72.8
MsG0880045324.01.T01 AT4G31010 45.679 81 36 2 24 102 151 225 1.25e-12 67.4
MsG0880045324.01.T01 AT4G31010 45.312 64 35 0 191 254 230 293 1.11e-13 70.5
MsG0880045324.01.T01 AT4G31010 44.318 88 41 2 24 109 151 232 2.85e-13 69.3

Find 75 sgRNAs with CRISPR-Local

Find 206 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTCGGTGAGTTGGAATTTA+AGG 0.130290 8:-57510904 MsG0880045324.01.T01:CDS
TGAAATGCCGGGGCCGTTTC+CGG 0.203657 8:-57511040 MsG0880045324.01.T01:CDS
CTTGCCCTCAAGGTGGGATT+TGG 0.220028 8:+57509054 None:intergenic
CAACAAGAAGTCTCTCAAAA+TGG 0.247322 8:-57509082 MsG0880045324.01.T01:CDS
TCAGCTTTCGTTAATCCTTC+TGG 0.253371 8:+57508452 None:intergenic
GGAGCATCTTGTATAAGTTT+TGG 0.254544 8:+57508473 None:intergenic
GAGATTAACTTGGCGATTAT+CGG 0.301688 8:+57510923 None:intergenic
TTGCCCTCAAGGTGGGATTT+GGG 0.323740 8:+57509055 None:intergenic
CTGTTGCCAATATGTAAATT+AGG 0.342351 8:-57508399 None:intergenic
ATCAATTTCAAACCTCGATA+TGG 0.354451 8:+57510173 None:intergenic
TGGTTACCTAATTTACATAT+TGG 0.355567 8:+57508393 None:intergenic
CTCGGTGAGTTGGAATTTAA+GGG 0.363203 8:-57510903 MsG0880045324.01.T01:intron
CCTCTCTACTCACCTTCTTC+AGG 0.375590 8:+57511006 None:intergenic
TGGCGATTATCGGCCATCAT+AGG 0.381412 8:+57510933 None:intergenic
AGGCGTTCCTACTGTTGATA+TGG 0.382959 8:-57510209 MsG0880045324.01.T01:CDS
TGCCGGGGCCGTTTCCGGTT+GGG 0.392027 8:-57511035 MsG0880045324.01.T01:CDS
CTAATTTACATATTGGCAAC+AGG 0.396896 8:+57508400 None:intergenic
CACAGTATCCAGTGATGCTC+TGG 0.436749 8:-57508517 MsG0880045324.01.T01:CDS
AACAAGAAGTCTCTCAAAAT+GGG 0.443130 8:-57509081 MsG0880045324.01.T01:CDS
AAGCTGAAGCAGATGAATTA+CGG 0.453903 8:-57508436 MsG0880045324.01.T01:CDS
GCTGGCTTCCAGAGCATCAC+TGG 0.454686 8:+57508509 None:intergenic
CCAACTCACCGAGATTAACT+TGG 0.455660 8:+57510913 None:intergenic
GTGAGTAGAGAGGAGATACT+TGG 0.459284 8:-57510996 MsG0880045324.01.T01:CDS
TCTTCAGGAAACTTCCCAAC+CGG 0.464664 8:+57511021 None:intergenic
GGAAACTTCCCAACCGGAAA+CGG 0.466951 8:+57511027 None:intergenic
TTATCAAATTCAAAGGGAAC+AGG 0.471323 8:-57509122 MsG0880045324.01.T01:CDS
GACTCGGCGACGCTTCCAAT+GGG 0.475021 8:+57510249 None:intergenic
TTCCCAACCGGAAACGGCCC+CGG 0.479889 8:+57511033 None:intergenic
TTTGGATAAACAGGAGCAGC+TGG 0.481573 8:+57508491 None:intergenic
GTTGGGAAGTTTCCTGAAGA+AGG 0.486448 8:-57511018 MsG0880045324.01.T01:CDS
GTCTGTAAAATTCGTTGTAA+AGG 0.490421 8:-57510229 MsG0880045324.01.T01:CDS
ATGCCGGGGCCGTTTCCGGT+TGG 0.495232 8:-57511036 MsG0880045324.01.T01:CDS
ATACAGATTATCAAATTCAA+AGG 0.496848 8:-57509129 MsG0880045324.01.T01:CDS
TCAAAGGGAACAGGAATGGT+TGG 0.498102 8:-57509113 MsG0880045324.01.T01:CDS
GAAGCTCCACCTTGCCCTCA+AGG 0.500772 8:+57509044 None:intergenic
AATGTTTATACCGTCATGAC+AGG 0.507237 8:-57508622 MsG0880045324.01.T01:CDS
TACAGATTATCAAATTCAAA+GGG 0.509120 8:-57509128 MsG0880045324.01.T01:CDS
TGTTAAGAAAGTTGAAATGC+CGG 0.512054 8:-57511052 MsG0880045324.01.T01:CDS
TGCACCTCCCACTTCTTAAG+CGG 0.514241 8:+57510969 None:intergenic
CAAAGGGAACAGGAATGGTT+GGG 0.522102 8:-57509112 MsG0880045324.01.T01:CDS
CCGTCATGACAGGAGAAAGC+AGG 0.528302 8:-57508612 MsG0880045324.01.T01:CDS
CAAATCCCACCTTGAGGGCA+AGG 0.534379 8:-57509053 MsG0880045324.01.T01:CDS
GCAGATGAATTACGGATGAA+AGG 0.535832 8:-57508428 MsG0880045324.01.T01:CDS
CCAAGTTAATCTCGGTGAGT+TGG 0.536247 8:-57510913 MsG0880045324.01.T01:CDS
GTTAAGAAAGTTGAAATGCC+GGG 0.537574 8:-57511051 MsG0880045324.01.T01:CDS
CTGGATACTGTGGACGAGTA+CGG 0.540010 8:+57508528 None:intergenic
AGACTCGGCGACGCTTCCAA+TGG 0.540047 8:+57510248 None:intergenic
CCTGCTTTCTCCTGTCATGA+CGG 0.549496 8:+57508612 None:intergenic
TGGAGTTAATACATTCCCAT+TGG 0.549668 8:-57510264 MsG0880045324.01.T01:CDS
CTCCACCTTGCCCTCAAGGT+GGG 0.564172 8:+57509048 None:intergenic
AATCCCAAATCCCACCTTGA+GGG 0.573347 8:-57509058 MsG0880045324.01.T01:CDS
GGGGAAATAATTCATCGAGC+TGG 0.575482 8:-57508590 MsG0880045324.01.T01:CDS
TGGATTAACGCATAACATGT+TGG 0.584391 8:-57510284 MsG0880045324.01.T01:CDS
TTGGTGAGCCGCTTAAGAAG+TGG 0.586181 8:-57510977 MsG0880045324.01.T01:CDS
GAAATAATTCATCGAGCTGG+CGG 0.588914 8:-57508587 MsG0880045324.01.T01:CDS
CGTCATGACAGGAGAAAGCA+GGG 0.589855 8:-57508611 MsG0880045324.01.T01:CDS
AAATTCAAAGGGAACAGGAA+TGG 0.591125 8:-57509117 MsG0880045324.01.T01:CDS
TGGTGAGCCGCTTAAGAAGT+GGG 0.592158 8:-57510976 MsG0880045324.01.T01:CDS
GGTAGTTGTAATTTCTGCCA+CGG 0.594943 8:+57508549 None:intergenic
CCTGAAGAAGGTGAGTAGAG+AGG 0.608937 8:-57511006 MsG0880045324.01.T01:CDS
CTTATACAAGATGCTCCAGA+AGG 0.609269 8:-57508467 MsG0880045324.01.T01:CDS
CAACAATCAACTTTAATGCA+CGG 0.610994 8:+57508675 None:intergenic
ACATTATCCATATCAACAGT+AGG 0.612759 8:+57510202 None:intergenic
TAATGTTTGCCGCCATATCG+AGG 0.613429 8:-57510185 MsG0880045324.01.T01:intron
AATGCTTGTTAAGCCTATGA+TGG 0.616220 8:-57510946 MsG0880045324.01.T01:CDS
GATAATCGCCAAGTTAATCT+CGG 0.621259 8:-57510921 MsG0880045324.01.T01:CDS
AATTTCAAACCTCGATATGG+CGG 0.625027 8:+57510176 None:intergenic
GCTCCACCTTGCCCTCAAGG+TGG 0.637609 8:+57509047 None:intergenic
GAATCCCAAATCCCACCTTG+AGG 0.648048 8:-57509059 MsG0880045324.01.T01:CDS
ATCCCACCTTGAGGGCAAGG+TGG 0.652015 8:-57509050 MsG0880045324.01.T01:CDS
CAGAGCATCACTGGATACTG+TGG 0.656560 8:+57508518 None:intergenic
TTAAGAAAGTTGAAATGCCG+GGG 0.675956 8:-57511050 MsG0880045324.01.T01:CDS
TCATGACAGGAGAAAGCAGG+GGG 0.687250 8:-57508609 MsG0880045324.01.T01:CDS
TGAGCCGCTTAAGAAGTGGG+AGG 0.754394 8:-57510973 MsG0880045324.01.T01:CDS
GTCATGACAGGAGAAAGCAG+GGG 0.763737 8:-57508610 MsG0880045324.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTATGACTAAAATTAT+TGG + Chr8:57509789-57509808 None:intergenic 10.0%
!! ATAAAGTCTAAACAAAAAAT+GGG + Chr8:57510625-57510644 None:intergenic 15.0%
!! TATAAAGTCTAAACAAAAAA+TGG + Chr8:57510626-57510645 None:intergenic 15.0%
!! TCACAAGTTATAAATTATAT+GGG + Chr8:57510551-57510570 None:intergenic 15.0%
!!! TAATTTTATAGATGTTGATA+TGG + Chr8:57509731-57509750 None:intergenic 15.0%
!!! TATATCTATCTATTCTAAAA+TGG + Chr8:57509079-57509098 None:intergenic 15.0%
!! AAACAGTTATGTATCAAATT+AGG - Chr8:57509911-57509930 MsG0880045324.01.T01:intron 20.0%
!! AACTATAATAAACATCCATT+TGG - Chr8:57510125-57510144 MsG0880045324.01.T01:intron 20.0%
!! ACTAATATGTAAAACTATGT+AGG - Chr8:57509829-57509848 MsG0880045324.01.T01:intron 20.0%
!! ATACAGATTATCAAATTCAA+AGG - Chr8:57510330-57510349 MsG0880045324.01.T01:intron 20.0%
!! GTCACAAGTTATAAATTATA+TGG + Chr8:57510552-57510571 None:intergenic 20.0%
!! TACAGATTATCAAATTCAAA+GGG - Chr8:57510331-57510350 MsG0880045324.01.T01:intron 20.0%
!! TATATAAATGATTCAGATTG+TGG - Chr8:57508993-57509012 MsG0880045324.01.T01:intron 20.0%
! AAATTCATTACTGGTACTAA+TGG - Chr8:57510245-57510264 MsG0880045324.01.T01:CDS 25.0%
! ACCAATACTAATTTGAGAAA+TGG + Chr8:57508867-57508886 None:intergenic 25.0%
! ACTAAAATTATTGGACTTTC+CGG + Chr8:57509780-57509799 None:intergenic 25.0%
! ACTTGCATAATATCATTCTA+TGG - Chr8:57509356-57509375 MsG0880045324.01.T01:intron 25.0%
! ATAATAAACATCCATTTGGA+AGG - Chr8:57510129-57510148 MsG0880045324.01.T01:intron 25.0%
! CAATGAAATCTATATCTGTT+GGG + Chr8:57510721-57510740 None:intergenic 25.0%
! GATAGATATATTGTGAATTG+TGG - Chr8:57509089-57509108 MsG0880045324.01.T01:CDS 25.0%
! TACATTGTCGTCAAAAAATA+GGG + Chr8:57509583-57509602 None:intergenic 25.0%
! TCAATGAAATCTATATCTGT+TGG + Chr8:57510722-57510741 None:intergenic 25.0%
! TCCATTTCTCAAATTAGTAT+TGG - Chr8:57508863-57508882 MsG0880045324.01.T01:intron 25.0%
! TTACATTGTCGTCAAAAAAT+AGG + Chr8:57509584-57509603 None:intergenic 25.0%
! TTCATTAGTTAGGTAAATAG+CGG - Chr8:57510502-57510521 MsG0880045324.01.T01:intron 25.0%
!! ATTTATAACTTGTGACTGAA+AGG - Chr8:57510556-57510575 MsG0880045324.01.T01:intron 25.0%
!! GTATTGTGTTAATGATGTTT+TGG - Chr8:57509125-57509144 MsG0880045324.01.T01:CDS 25.0%
!! TTGATTTTATGATTCAGGAA+GGG - Chr8:57509151-57509170 MsG0880045324.01.T01:intron 25.0%
!!! GGTTTTTGATTTTATGATTC+AGG - Chr8:57509146-57509165 MsG0880045324.01.T01:intron 25.0%
!!! TAGTTTTACATATTAGTCGA+TGG + Chr8:57509826-57509845 None:intergenic 25.0%
!!! TATTCTCTTTAGGATAGTTT+TGG - Chr8:57510026-57510045 MsG0880045324.01.T01:intron 25.0%
!!! TCAAGTTGAATGTATTGTTA+GGG - Chr8:57510436-57510455 MsG0880045324.01.T01:intron 25.0%
!!! TGTATAAGTTTTGGATAAAC+AGG + Chr8:57510980-57510999 None:intergenic 25.0%
!!! TTATGCAAGTGTTTTTATGT+TGG + Chr8:57509346-57509365 None:intergenic 25.0%
!!! TTCAAGTTGAATGTATTGTT+AGG - Chr8:57510435-57510454 MsG0880045324.01.T01:intron 25.0%
!!! TTTGATTTTATGATTCAGGA+AGG - Chr8:57509150-57509169 MsG0880045324.01.T01:intron 25.0%
AACAAGAAGTCTCTCAAAAT+GGG - Chr8:57510378-57510397 MsG0880045324.01.T01:intron 30.0%
AACAATGATCGACAATATCA+AGG + Chr8:57508598-57508617 None:intergenic 30.0%
ACATTATCCATATCAACAGT+AGG + Chr8:57509260-57509279 None:intergenic 30.0%
AGATCGAAAGAATTAAAGGA+TGG + Chr8:57510673-57510692 None:intergenic 30.0%
ATCAATTTCAAACCTCGATA+TGG + Chr8:57509289-57509308 None:intergenic 30.0%
ATCCTTTAATTCTTTCGATC+TGG - Chr8:57510672-57510691 MsG0880045324.01.T01:intron 30.0%
ATCTGTATAACTCTGTTATG+AGG + Chr8:57510318-57510337 None:intergenic 30.0%
CAACAATCAACTTTAATGCA+CGG + Chr8:57510787-57510806 None:intergenic 30.0%
CCCTACTTATGTCATATATA+CGG + Chr8:57509959-57509978 None:intergenic 30.0%
CCGTATATATGACATAAGTA+GGG - Chr8:57509956-57509975 MsG0880045324.01.T01:intron 30.0%
CGTATATATGACATAAGTAG+GGG - Chr8:57509957-57509976 MsG0880045324.01.T01:intron 30.0%
CTAAGCTAGAAATTCATTAC+TGG - Chr8:57510236-57510255 MsG0880045324.01.T01:CDS 30.0%
CTAATTTACATATTGGCAAC+AGG + Chr8:57511062-57511081 None:intergenic 30.0%
GATATATTGTGAATTGTGGA+AGG - Chr8:57509093-57509112 MsG0880045324.01.T01:CDS 30.0%
GATCGAAAGAATTAAAGGAT+GGG + Chr8:57510672-57510691 None:intergenic 30.0%
GTATATATGACATAAGTAGG+GGG - Chr8:57509958-57509977 MsG0880045324.01.T01:intron 30.0%
GTCTGTAAAATTCGTTGTAA+AGG - Chr8:57509230-57509249 MsG0880045324.01.T01:intron 30.0%
TATTAGGCATGTTGGTATTA+AGG + Chr8:57509706-57509725 None:intergenic 30.0%
TCCGTATATATGACATAAGT+AGG - Chr8:57509955-57509974 MsG0880045324.01.T01:intron 30.0%
TCCTTTAATTCTTTCGATCT+GGG - Chr8:57510673-57510692 MsG0880045324.01.T01:intron 30.0%
TGTCATCAACTACTATTTGA+TGG - Chr8:57509752-57509771 MsG0880045324.01.T01:intron 30.0%
TGTTAAGAAAGTTGAAATGC+CGG - Chr8:57508407-57508426 MsG0880045324.01.T01:CDS 30.0%
TTATCAAATTCAAAGGGAAC+AGG - Chr8:57510337-57510356 MsG0880045324.01.T01:intron 30.0%
TTGAATGTAATCACATGTGT+CGG - Chr8:57508764-57508783 MsG0880045324.01.T01:intron 30.0%
! AGATGTTGATATGGAGTATT+AGG + Chr8:57509722-57509741 None:intergenic 30.0%
! ATGAATAGGATTTTCTGTAC+AGG + Chr8:57509487-57509506 None:intergenic 30.0%
! TAAATAGCGGAAATCAGATT+GGG - Chr8:57510515-57510534 MsG0880045324.01.T01:intron 30.0%
! TACAACGAATTTTACAGACT+CGG + Chr8:57509229-57509248 None:intergenic 30.0%
! TCTAAAATGGTATTCCAGAA+TGG + Chr8:57509066-57509085 None:intergenic 30.0%
! TTGTTAGGGTATCTCATTTA+AGG - Chr8:57510450-57510469 MsG0880045324.01.T01:intron 30.0%
!! CAGTAATGAATTTCTAGCTT+AGG + Chr8:57510238-57510257 None:intergenic 30.0%
AAAGGAAAGATCCATTGTGA+AGG - Chr8:57510574-57510593 MsG0880045324.01.T01:intron 35.0%
AAATTCAAAGGGAACAGGAA+TGG - Chr8:57510342-57510361 MsG0880045324.01.T01:intron 35.0%
AAGCTGAAGCAGATGAATTA+CGG - Chr8:57511023-57511042 MsG0880045324.01.T01:CDS 35.0%
AAGGAAAGATCCATTGTGAA+GGG - Chr8:57510575-57510594 MsG0880045324.01.T01:intron 35.0%
AATGTTTATACCGTCATGAC+AGG - Chr8:57510837-57510856 MsG0880045324.01.T01:intron 35.0%
AATTTCAAACCTCGATATGG+CGG + Chr8:57509286-57509305 None:intergenic 35.0%
ACCCAGATCGAAAGAATTAA+AGG + Chr8:57510677-57510696 None:intergenic 35.0%
AGGTTCTTACGATGTGTATT+CGG - Chr8:57509986-57510005 MsG0880045324.01.T01:intron 35.0%
AGTCTGTCAGTTCATTAGTT+AGG - Chr8:57510492-57510511 MsG0880045324.01.T01:intron 35.0%
ATATACCAACCCTTCACAAA+TGG - Chr8:57509549-57509568 MsG0880045324.01.T01:intron 35.0%
ATCATTCTATGGCTGAGTAT+AGG - Chr8:57509367-57509386 MsG0880045324.01.T01:intron 35.0%
ATGCCTTCAATCAGAAATGT+TGG + Chr8:57508646-57508665 None:intergenic 35.0%
ATGTTGGTATTAAGGATGGT+TGG + Chr8:57509698-57509717 None:intergenic 35.0%
CAACAAGAAGTCTCTCAAAA+TGG - Chr8:57510377-57510396 MsG0880045324.01.T01:intron 35.0%
CTTCATGCATTTGCATGAAT+AGG + Chr8:57509501-57509520 None:intergenic 35.0%
GATAATCGCCAAGTTAATCT+CGG - Chr8:57508538-57508557 MsG0880045324.01.T01:CDS 35.0%
GGACAGAGTATATTCTCTTT+AGG - Chr8:57510016-57510035 MsG0880045324.01.T01:intron 35.0%
GTTAAGAAAGTTGAAATGCC+GGG - Chr8:57508408-57508427 MsG0880045324.01.T01:CDS 35.0%
TATACCAACCCTTCACAAAT+GGG - Chr8:57509550-57509569 MsG0880045324.01.T01:intron 35.0%
TCACAAAGTTGTACATCCTA+TGG + Chr8:57510176-57510195 None:intergenic 35.0%
TGGAGTTAATACATTCCCAT+TGG - Chr8:57509195-57509214 MsG0880045324.01.T01:intron 35.0%
TGGATTAACGCATAACATGT+TGG - Chr8:57509175-57509194 MsG0880045324.01.T01:intron 35.0%
TTAAGAAAGTTGAAATGCCG+GGG - Chr8:57508409-57508428 MsG0880045324.01.T01:CDS 35.0%
! AAATAGCGGAAATCAGATTG+GGG - Chr8:57510516-57510535 MsG0880045324.01.T01:intron 35.0%
! AATGCTTGTTAAGCCTATGA+TGG - Chr8:57508513-57508532 MsG0880045324.01.T01:CDS 35.0%
! ATATGGAGTATTAGGCATGT+TGG + Chr8:57509714-57509733 None:intergenic 35.0%
! GAGATTAACTTGGCGATTAT+CGG + Chr8:57508539-57508558 None:intergenic 35.0%
! GTAAATAGCGGAAATCAGAT+TGG - Chr8:57510514-57510533 MsG0880045324.01.T01:intron 35.0%
! TTTTATGATTCAGGAAGGGA+TGG - Chr8:57509155-57509174 MsG0880045324.01.T01:intron 35.0%
!! GGAGCATCTTGTATAAGTTT+TGG + Chr8:57510989-57511008 None:intergenic 35.0%
!! GTTTGAGACTACAGGATTTT+GGG + Chr8:57509654-57509673 None:intergenic 35.0%
!! TGATTGAAGGCATTAGATGT+AGG - Chr8:57508653-57508672 MsG0880045324.01.T01:CDS 35.0%
!! TGTTTGAGACTACAGGATTT+TGG + Chr8:57509655-57509674 None:intergenic 35.0%
!! TTCTAGCTTAGGATGTAAGT+AGG + Chr8:57510227-57510246 None:intergenic 35.0%
AGATCAGGAAGTAGTTATGG+CGG + Chr8:57510204-57510223 None:intergenic 40.0%
AGGAGATCAGGAAGTAGTTA+TGG + Chr8:57510207-57510226 None:intergenic 40.0%
AGGCATGTTGGTATTAAGGA+TGG + Chr8:57509702-57509721 None:intergenic 40.0%
AGTATAGGATTGTGCACATG+GGG - Chr8:57509382-57509401 MsG0880045324.01.T01:intron 40.0%
AGTTGTGTAGTTCATCATGC+AGG - Chr8:57509854-57509873 MsG0880045324.01.T01:intron 40.0%
ATTGTGAAGGGAAAAACCCT+TGG - Chr8:57510587-57510606 MsG0880045324.01.T01:intron 40.0%
CAATTGAGACTTCTGATCGA+AGG + Chr8:57508804-57508823 None:intergenic 40.0%
CAGAAATGTTGGTGCATCAT+AGG + Chr8:57508635-57508654 None:intergenic 40.0%
CTGTTATGAGGTAGTGACAT+AGG + Chr8:57510306-57510325 None:intergenic 40.0%
CTTATACAAGATGCTCCAGA+AGG - Chr8:57510992-57511011 MsG0880045324.01.T01:CDS 40.0%
GAAATAATTCATCGAGCTGG+CGG - Chr8:57510872-57510891 MsG0880045324.01.T01:intron 40.0%
GAATTAAAGGATGGGAGTTG+TGG + Chr8:57510664-57510683 None:intergenic 40.0%
GAGTATAGGATTGTGCACAT+GGG - Chr8:57509381-57509400 MsG0880045324.01.T01:intron 40.0%
GCACCAACATTTCTGATTGA+AGG - Chr8:57508640-57508659 MsG0880045324.01.T01:CDS 40.0%
GCAGATGAATTACGGATGAA+AGG - Chr8:57511031-57511050 MsG0880045324.01.T01:CDS 40.0%
GGACAAAGTATATTCTCTGC+AGG - Chr8:57510047-57510066 MsG0880045324.01.T01:intron 40.0%
GGTAGTTGTAATTTCTGCCA+CGG + Chr8:57510913-57510932 None:intergenic 40.0%
GTCAATTGCCCATTTGTGAA+GGG + Chr8:57509561-57509580 None:intergenic 40.0%
GTCATGTCTCAAATTAGTCC+TGG + Chr8:57508740-57508759 None:intergenic 40.0%
TAGGATGTAAGTAGGAGATC+AGG + Chr8:57510219-57510238 None:intergenic 40.0%
TCAGCTTTCGTTAATCCTTC+TGG + Chr8:57511010-57511029 None:intergenic 40.0%
TCCAGAAGAATGTACACCAT+AGG - Chr8:57510157-57510176 MsG0880045324.01.T01:intron 40.0%
TCCTATGGTGTACATTCTTC+TGG + Chr8:57510161-57510180 None:intergenic 40.0%
TGAGTATAGGATTGTGCACA+TGG - Chr8:57509380-57509399 MsG0880045324.01.T01:intron 40.0%
TGTGTCAATGTCGTGTTTGA+TGG - Chr8:57508892-57508911 MsG0880045324.01.T01:intron 40.0%
TGTTAGTGTGAGTGCTTCAT+AGG - Chr8:57508916-57508935 MsG0880045324.01.T01:intron 40.0%
TTCTGTACAGGATCATCAGA+AGG + Chr8:57509475-57509494 None:intergenic 40.0%
TTGTGAATTGTGGAAGGTGA+AGG - Chr8:57509099-57509118 MsG0880045324.01.T01:CDS 40.0%
! AAGGGTTTTTCCCTTCACAA+TGG + Chr8:57510588-57510607 None:intergenic 40.0%
! CAACTACTATTTGATGGCAC+CGG - Chr8:57509758-57509777 MsG0880045324.01.T01:intron 40.0%
! CGATGTGTATTCGGTAGTTT+TGG - Chr8:57509995-57510014 MsG0880045324.01.T01:intron 40.0%
! CTCGGTGAGTTGGAATTTAA+GGG - Chr8:57508556-57508575 MsG0880045324.01.T01:CDS 40.0%
! CTTTGGTTGTTTGAGACTAC+AGG + Chr8:57509662-57509681 None:intergenic 40.0%
! GGTGTAGTTTATCTTTTCCG+TGG - Chr8:57510893-57510912 MsG0880045324.01.T01:intron 40.0%
! GTAATCACATGTGTCGGTAT+TGG - Chr8:57508770-57508789 MsG0880045324.01.T01:intron 40.0%
! TCTCGGTGAGTTGGAATTTA+AGG - Chr8:57508555-57508574 MsG0880045324.01.T01:CDS 40.0%
! TCTGGAGTATACCTTCCAAA+TGG + Chr8:57510143-57510162 None:intergenic 40.0%
! TTGGTGTCTAGTTCAAGCTT+TGG + Chr8:57509679-57509698 None:intergenic 40.0%
!! TTGTGCAGAAGCTGTTTTAG+TGG - Chr8:57509446-57509465 MsG0880045324.01.T01:intron 40.0%
AAGCAGAGATCGAGAATGAG+AGG + Chr8:57509610-57509629 None:intergenic 45.0%
AATCCCAAATCCCACCTTGA+GGG - Chr8:57510401-57510420 MsG0880045324.01.T01:intron 45.0%
AGCAGAGATCGAGAATGAGA+GGG + Chr8:57509609-57509628 None:intergenic 45.0%
AGGCGTTCCTACTGTTGATA+TGG - Chr8:57509250-57509269 MsG0880045324.01.T01:intron 45.0%
AGTTCCATCTTCGCAAGGTT+TGG - Chr8:57509519-57509538 MsG0880045324.01.T01:intron 45.0%
ATGGGAATAGAATCACGCCA+AGG + Chr8:57510607-57510626 None:intergenic 45.0%
ATTGCCCATTTGTGAAGGGT+TGG + Chr8:57509557-57509576 None:intergenic 45.0%
CAAAGGGAACAGGAATGGTT+GGG - Chr8:57510347-57510366 MsG0880045324.01.T01:intron 45.0%
CAAGTGCAAGATTGCCATTC+TGG - Chr8:57509049-57509068 MsG0880045324.01.T01:CDS 45.0%
CATGAAGTTCCATCTTCGCA+AGG - Chr8:57509514-57509533 MsG0880045324.01.T01:intron 45.0%
CCAACTCACCGAGATTAACT+TGG + Chr8:57508549-57508568 None:intergenic 45.0%
CCAAGTTAATCTCGGTGAGT+TGG - Chr8:57508546-57508565 MsG0880045324.01.T01:CDS 45.0%
GATCAGGAAGTAGTTATGGC+GGG + Chr8:57510203-57510222 None:intergenic 45.0%
GCATCATAGGCAGCTACATT+AGG + Chr8:57508622-57508641 None:intergenic 45.0%
GGGGAAATAATTCATCGAGC+TGG - Chr8:57510869-57510888 MsG0880045324.01.T01:intron 45.0%
GGTCAATTGCCCATTTGTGA+AGG + Chr8:57509562-57509581 None:intergenic 45.0%
GTGAGTAGAGAGGAGATACT+TGG - Chr8:57508463-57508482 MsG0880045324.01.T01:CDS 45.0%
GTTGGGAAGTTTCCTGAAGA+AGG - Chr8:57508441-57508460 MsG0880045324.01.T01:CDS 45.0%
GTTTGTGTCTGTGTCTGTGT+TGG + Chr8:57508684-57508703 None:intergenic 45.0%
TAATGTTTGCCGCCATATCG+AGG - Chr8:57509274-57509293 MsG0880045324.01.T01:intron 45.0%
TCAAAGGGAACAGGAATGGT+TGG - Chr8:57510346-57510365 MsG0880045324.01.T01:intron 45.0%
TCTTCAGGAAACTTCCCAAC+CGG + Chr8:57508441-57508460 None:intergenic 45.0%
TGCAGGAGTTCATCAACTCT+GGG - Chr8:57510064-57510083 MsG0880045324.01.T01:intron 45.0%
TGGGAATAGAATCACGCCAA+GGG + Chr8:57510606-57510625 None:intergenic 45.0%
TTTGGATAAACAGGAGCAGC+TGG + Chr8:57510971-57510990 None:intergenic 45.0%
AGCGGAAATCAGATTGGGGA+GGG - Chr8:57510520-57510539 MsG0880045324.01.T01:intron 50.0%
CACAGTATCCAGTGATGCTC+TGG - Chr8:57510942-57510961 MsG0880045324.01.T01:CDS 50.0%
CAGAGATCGAGAATGAGAGG+GGG + Chr8:57509607-57509626 None:intergenic 50.0%
CCTCTCTACTCACCTTCTTC+AGG + Chr8:57508456-57508475 None:intergenic 50.0%
CCTGAAGAAGGTGAGTAGAG+AGG - Chr8:57508453-57508472 MsG0880045324.01.T01:CDS 50.0%
CCTGCTTTCTCCTGTCATGA+CGG + Chr8:57510850-57510869 None:intergenic 50.0%
CGTCATGACAGGAGAAAGCA+GGG - Chr8:57510848-57510867 MsG0880045324.01.T01:intron 50.0%
CTGCAGGAGTTCATCAACTC+TGG - Chr8:57510063-57510082 MsG0880045324.01.T01:intron 50.0%
CTGGATACTGTGGACGAGTA+CGG + Chr8:57510934-57510953 None:intergenic 50.0%
GAATCCCAAATCCCACCTTG+AGG - Chr8:57510400-57510419 MsG0880045324.01.T01:intron 50.0%
GACATAAGTAGGGGGCTAAG+AGG - Chr8:57509966-57509985 MsG0880045324.01.T01:intron 50.0%
GCAGAGATCGAGAATGAGAG+GGG + Chr8:57509608-57509627 None:intergenic 50.0%
GGAAACTTCCCAACCGGAAA+CGG + Chr8:57508435-57508454 None:intergenic 50.0%
GTCACCAAACCTTGCGAAGA+TGG + Chr8:57509526-57509545 None:intergenic 50.0%
GTCATGACAGGAGAAAGCAG+GGG - Chr8:57510849-57510868 MsG0880045324.01.T01:intron 50.0%
TAGCGGAAATCAGATTGGGG+AGG - Chr8:57510519-57510538 MsG0880045324.01.T01:intron 50.0%
TCATGACAGGAGAAAGCAGG+GGG - Chr8:57510850-57510869 MsG0880045324.01.T01:intron 50.0%
TGCACCTCCCACTTCTTAAG+CGG + Chr8:57508493-57508512 None:intergenic 50.0%
TGGCGATTATCGGCCATCAT+AGG + Chr8:57508529-57508548 None:intergenic 50.0%
TGGTGAGCCGCTTAAGAAGT+GGG - Chr8:57508483-57508502 MsG0880045324.01.T01:CDS 50.0%
TTGCCCTCAAGGTGGGATTT+GGG + Chr8:57510407-57510426 None:intergenic 50.0%
TTGGTGAGCCGCTTAAGAAG+TGG - Chr8:57508482-57508501 MsG0880045324.01.T01:CDS 50.0%
! CAGAGCATCACTGGATACTG+TGG + Chr8:57510944-57510963 None:intergenic 50.0%
! TAGTCCTGGTGTCAACGTGT+TGG + Chr8:57508726-57508745 None:intergenic 50.0%
CAAATCCCACCTTGAGGGCA+AGG - Chr8:57510406-57510425 MsG0880045324.01.T01:intron 55.0%
CCGTCATGACAGGAGAAAGC+AGG - Chr8:57510847-57510866 MsG0880045324.01.T01:intron 55.0%
CTTGCCCTCAAGGTGGGATT+TGG + Chr8:57510408-57510427 None:intergenic 55.0%
TGAGCCGCTTAAGAAGTGGG+AGG - Chr8:57508486-57508505 MsG0880045324.01.T01:CDS 55.0%
! CAACGTGTTGGCGTCAAGTC+TGG + Chr8:57508714-57508733 None:intergenic 55.0%
AGACTCGGCGACGCTTCCAA+TGG + Chr8:57509214-57509233 None:intergenic 60.0%
ATCCCACCTTGAGGGCAAGG+TGG - Chr8:57510409-57510428 MsG0880045324.01.T01:intron 60.0%
CTCCACCTTGCCCTCAAGGT+GGG + Chr8:57510414-57510433 None:intergenic 60.0%
GAAGCTCCACCTTGCCCTCA+AGG + Chr8:57510418-57510437 None:intergenic 60.0%
GACGCCAACACGTTGACACC+AGG - Chr8:57508719-57508738 MsG0880045324.01.T01:CDS 60.0%
GACTCGGCGACGCTTCCAAT+GGG + Chr8:57509213-57509232 None:intergenic 60.0%
TGAAATGCCGGGGCCGTTTC+CGG - Chr8:57508419-57508438 MsG0880045324.01.T01:CDS 60.0%
! GCTGGCTTCCAGAGCATCAC+TGG + Chr8:57510953-57510972 None:intergenic 60.0%
GCTCCACCTTGCCCTCAAGG+TGG + Chr8:57510415-57510434 None:intergenic 65.0%
TTCCCAACCGGAAACGGCCC+CGG + Chr8:57508429-57508448 None:intergenic 65.0%
ATGCCGGGGCCGTTTCCGGT+TGG - Chr8:57508423-57508442 MsG0880045324.01.T01:CDS 70.0%
TGCCGGGGCCGTTTCCGGTT+GGG - Chr8:57508424-57508443 MsG0880045324.01.T01:CDS 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 57508400 57511081 57508400 ID=MsG0880045324.01;Name=MsG0880045324.01
Chr8 mRNA 57508400 57511081 57508400 ID=MsG0880045324.01.T01;Parent=MsG0880045324.01;Name=MsG0880045324.01.T01;_AED=0.48;_eAED=0.66;_QI=0|0|0.25|1|0.33|0.5|4|0|260
Chr8 exon 57510904 57511081 57510904 ID=MsG0880045324.01.T01:exon:1387;Parent=MsG0880045324.01.T01
Chr8 exon 57510186 57510313 57510186 ID=MsG0880045324.01.T01:exon:1386;Parent=MsG0880045324.01.T01
Chr8 exon 57509035 57509155 57509035 ID=MsG0880045324.01.T01:exon:1385;Parent=MsG0880045324.01.T01
Chr8 exon 57508400 57508755 57508400 ID=MsG0880045324.01.T01:exon:1384;Parent=MsG0880045324.01.T01
Chr8 CDS 57510904 57511081 57510904 ID=MsG0880045324.01.T01:cds;Parent=MsG0880045324.01.T01
Chr8 CDS 57510186 57510313 57510186 ID=MsG0880045324.01.T01:cds;Parent=MsG0880045324.01.T01
Chr8 CDS 57509035 57509155 57509035 ID=MsG0880045324.01.T01:cds;Parent=MsG0880045324.01.T01
Chr8 CDS 57508400 57508755 57508400 ID=MsG0880045324.01.T01:cds;Parent=MsG0880045324.01.T01
Gene Sequence

>MsG0880045324.01.T01

ATGAAAGTGTTAAGAAAGTTGAAATGCCGGGGCCGTTTCCGGTTGGGAAGTTTCCTGAAGAAGGTGAGTAGAGAGGAGATACTTGGTGAGCCGCTTAAGAAGTGGGAGGTGCAAATGCTTGTTAAGCCTATGATGGCCGATAATCGCCAAGTTAATCTCGGTGAGTTGGAATTTAAGGGAAGGGATGGATTAACGCATAACATGTTGGAGTTAATACATTCCCATTGGAAGCGTCGCCGAGTCTGTAAAATTCGTTGTAAAGGCGTTCCTACTGTTGATATGGATAATGTTTGCCGCCATATCGAGAGTTATACAGATTATCAAATTCAAAGGGAACAGGAATGGTTGGGAGATGATCAACAAGAAGTCTCTCAAAATGGGAATCCCAAATCCCACCTTGAGGGCAAGGTGGAGCTTCAAGTTGAATATATAGATTTCATTGATGCTTTTACTTTTCTTTTTCTTCTCTTGAATCAATCACTGAGCCGTGCATTAAAGTTGATTGTTGCATATGATCACTTTTTTTGCTTTGAAGTTAAATGTTTATACCGTCATGACAGGAGAAAGCAGGGGGAAATAATTCATCGAGCTGGCGGTGTAGTTTATCTTTTCCGTGGCAGAAATTACAACTACCGTACTCGTCCACAGTATCCAGTGATGCTCTGGAAGCCAGCTGCTCCTGTTTATCCAAAACTTATACAAGATGCTCCAGAAGGATTAACGAAAGCTGAAGCAGATGAATTACGGATGAAAGGAAAAGCCTGTTGCCAATATGTAAATTAG

Protein sequence

>MsG0880045324.01.T01

MKVLRKLKCRGRFRLGSFLKKVSREEILGEPLKKWEVQMLVKPMMADNRQVNLGELEFKGRDGLTHNMLELIHSHWKRRRVCKIRCKGVPTVDMDNVCRHIESYTDYQIQREQEWLGDDQQEVSQNGNPKSHLEGKVELQVEYIDFIDAFTFLFLLLNQSLSRALKLIVAYDHFFCFEVKCLYRHDRRKQGEIIHRAGGVVYLFRGRNYNYRTRPQYPVMLWKPAAPVYPKLIQDAPEGLTKAEADELRMKGKACCQYVN*