AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0880046040.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046040.01.T01 MTR_4g098490 99.367 158 1 0 1 158 1 158 1.44e-115 325
MsG0880046040.01.T01 MTR_2g006290 40.476 84 50 0 77 160 67 150 1.70e-18 77.8
MsG0880046040.01.T01 MTR_1g112030 38.824 85 52 0 74 158 71 155 3.06e-18 77.4
MsG0880046040.01.T01 MTR_1g112030 38.824 85 52 0 74 158 75 159 3.36e-18 77.4
MsG0880046040.01.T01 MTR_1g112050 38.824 85 52 0 74 158 69 153 4.93e-18 76.6
MsG0880046040.01.T01 MTR_8g088720 36.905 84 53 0 77 160 65 148 1.79e-17 75.1
MsG0880046040.01.T01 MTR_4g053120 37.647 85 53 0 74 158 70 154 5.34e-17 73.9
MsG0880046040.01.T01 MTR_2g086510 34.118 85 56 0 74 158 70 154 1.83e-15 70.1
MsG0880046040.01.T01 MTR_5g006320 32.653 98 63 2 63 160 51 145 3.58e-12 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0880046040.01.T01 AT1G32550 62.092 153 56 1 6 158 3 153 1.60e-62 191
MsG0880046040.01.T01 AT1G32550 55.030 169 55 3 6 158 3 166 4.63e-55 172
MsG0880046040.01.T01 AT2G27510 40.000 85 51 0 74 158 70 154 2.80e-17 74.7
MsG0880046040.01.T01 AT1G10960 38.667 75 46 0 84 158 73 147 2.19e-15 69.7
MsG0880046040.01.T01 AT1G60950 30.702 114 67 2 54 158 37 147 1.08e-14 67.8

Find 47 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGGCTTTGTATTAATAAA+TGG 0.191613 8:-68170419 None:intergenic
TCTACTTCAAGATCAGAGTA+TGG 0.311983 8:-68172979 None:intergenic
TAACGGAAGCAAACGATTAC+CGG 0.393000 8:+68170513 MsG0880046040.01.T01:CDS
AATCGAACAACAACTACTAC+TGG 0.397418 8:-68170396 None:intergenic
CTGACACGCACATAACTTAC+GGG 0.425566 8:-68170316 None:intergenic
GATACGTGTCAAGCAGCAAT+TGG 0.460437 8:+68170255 None:intergenic
TTACCCTTCCATTCGCCTGC+AGG 0.464055 8:+68170764 MsG0880046040.01.T01:CDS
GCAGATATCCCAAGTGCCTC+TGG 0.465646 8:-68172070 None:intergenic
TGCGCTGTTCGTATAAAGAA+TGG 0.468923 8:+68172034 MsG0880046040.01.T01:CDS
ACGTACCTGCTCTCTCAATT+CGG 0.472163 8:-68172092 None:intergenic
GCTGACACGCACATAACTTA+CGG 0.474547 8:-68170317 None:intergenic
CTTCCATTCGCCTGCAGGCA+TGG 0.476506 8:+68170769 MsG0880046040.01.T01:CDS
CAGCAGTATGCAATATATAC+TGG 0.486651 8:-68170729 None:intergenic
GTCGACGGTGGCAGCAGCGA+CGG 0.493828 8:+68170469 MsG0880046040.01.T01:CDS
TGGTGATGCTCCAACTCATA+AGG 0.497863 8:+68170544 MsG0880046040.01.T01:CDS
ATTAAACAGCCAGAGGCACT+TGG 0.500897 8:+68172061 MsG0880046040.01.T01:CDS
TACTACTGGGAATTCGAAGA+AGG 0.516293 8:-68170382 None:intergenic
TTTGCTTCCGTTAGTCTCAC+CGG 0.521493 8:-68170503 None:intergenic
CTGCTGCCACCGTCGACTTG+CGG 0.523336 8:-68170463 None:intergenic
GCGCTGTTCGTATAAAGAAT+GGG 0.523958 8:+68172035 MsG0880046040.01.T01:CDS
TGCCACCGTCGACTTGCGGA+GGG 0.528786 8:-68170459 None:intergenic
TTGGAAAAGAATCTAACGGT+TGG 0.533894 8:+68170274 MsG0880046040.01.T01:five_prime_UTR
CTGCCACCGTCGACTTGCGG+AGG 0.539461 8:-68170460 None:intergenic
CATGCCTGCAGGCGAATGGA+AGG 0.545098 8:-68170768 None:intergenic
CTACTTCAAGATCAGAGTAT+GGG 0.545399 8:-68172978 None:intergenic
GAGCATCACCACTAGGATAC+CGG 0.547091 8:-68170532 None:intergenic
AAAGTAAGTACCATGCCTGC+AGG 0.550244 8:-68170779 None:intergenic
GTACCATGCCTGCAGGCGAA+TGG 0.551891 8:-68170772 None:intergenic
TAATTCAAACCTCAGGTACA+AGG 0.558777 8:-68170607 None:intergenic
ATCTGCCGAATTGAGAGAGC+AGG 0.560872 8:+68172087 MsG0880046040.01.T01:CDS
TCAAACGCCGGTGAGACTAA+CGG 0.587698 8:+68170496 MsG0880046040.01.T01:CDS
ATCGAACAACAACTACTACT+GGG 0.588470 8:-68170395 None:intergenic
ACTACTGGGAATTCGAAGAA+GGG 0.593926 8:-68170381 None:intergenic
TCACGAATTCCTTGTACCTG+AGG 0.597412 8:+68170598 MsG0880046040.01.T01:CDS
TAAAACCCTCCGCAAGTCGA+CGG 0.598675 8:+68170454 MsG0880046040.01.T01:CDS
TTAAACAGCCAGAGGCACTT+GGG 0.610944 8:+68172062 MsG0880046040.01.T01:CDS
TGAGTTGGAGCATCACCACT+AGG 0.621541 8:-68170539 None:intergenic
GCAATTGGAAAAGAATCTAA+CGG 0.626783 8:+68170270 MsG0880046040.01.T01:five_prime_UTR
AGAAACTCAAGATGAAGATG+AGG 0.630393 8:+68172999 MsG0880046040.01.T01:CDS
CTACTGGGAATTCGAAGAAG+GGG 0.636238 8:-68170380 None:intergenic
AGCGACGGAGCTTCAAACGC+CGG 0.637539 8:+68170484 MsG0880046040.01.T01:CDS
AACCCTCCGCAAGTCGACGG+TGG 0.642319 8:+68170457 MsG0880046040.01.T01:CDS
ATGCCTGCAGGCGAATGGAA+GGG 0.644285 8:-68170767 None:intergenic
AACGATTACCGGTATCCTAG+TGG 0.663180 8:+68170524 MsG0880046040.01.T01:CDS
TGGGAAAATTAAACAGCCAG+AGG 0.663643 8:+68172054 MsG0880046040.01.T01:CDS
TGAACTGTGACCTTATGAGT+TGG 0.666810 8:-68170554 None:intergenic
ACAGTTCACGATAGACAACG+AGG 0.785544 8:+68170569 MsG0880046040.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATTGAATCTATATATAAT+TGG - Chr8:68171770-68171789 None:intergenic 10.0%
!!! TATTTTTTTCAATTTTCATT+AGG + Chr8:68171669-68171688 MsG0880046040.01.T01:intron 10.0%
!! ATAACATGTATAAAGTATAA+TGG - Chr8:68172320-68172339 None:intergenic 15.0%
!! CAATTCAATAAAATAGTTTA+AGG - Chr8:68171047-68171066 None:intergenic 15.0%
!! TAAAAAAAAGTTCATAAACA+TGG - Chr8:68172122-68172141 None:intergenic 15.0%
!! TATGTTAAAAATATCAAACT+TGG - Chr8:68171633-68171652 None:intergenic 15.0%
!!! TAATCATAACTTTCATTTTA+TGG + Chr8:68173037-68173056 MsG0880046040.01.T01:CDS 15.0%
!!! TATATTGATGTTTTATTCTT+TGG - Chr8:68171447-68171466 None:intergenic 15.0%
!!! TGAACTTTTTTTTATTGAAT+CGG + Chr8:68172128-68172147 MsG0880046040.01.T01:intron 15.0%
!! AAGAAAAAAGAAGAAGAAAA+TGG + Chr8:68170352-68170371 MsG0880046040.01.T01:exon 20.0%
!! GTAAAATATACAAACATCAT+AGG - Chr8:68172668-68172687 None:intergenic 20.0%
!! TATATATAATTGGTAGGTAA+GGG - Chr8:68171760-68171779 None:intergenic 20.0%
!! TGAATCTATATATAATTGGT+AGG - Chr8:68171766-68171785 None:intergenic 20.0%
!!! AAGTATATACGTGTTTTTTT+TGG + Chr8:68172548-68172567 MsG0880046040.01.T01:intron 20.0%
!!! ATGGATTTTCATATACTTTA+GGG + Chr8:68171500-68171519 MsG0880046040.01.T01:intron 20.0%
!!! TATTTGATACTTTTTATGGT+AGG + Chr8:68171998-68172017 MsG0880046040.01.T01:intron 20.0%
!!! TGCTTATTTGATACTTTTTA+TGG + Chr8:68171994-68172013 MsG0880046040.01.T01:intron 20.0%
!!! TTACATTTTGATTTCTTTGT+TGG + Chr8:68172684-68172703 MsG0880046040.01.T01:intron 20.0%
!!! TTCAATTTTCATTAGGTTAT+TGG + Chr8:68171676-68171695 MsG0880046040.01.T01:intron 20.0%
!!! TTTCCATATGTAATTTGTAA+TGG + Chr8:68171734-68171753 MsG0880046040.01.T01:intron 20.0%
!!! TTTTATGAACCTATCATATT+TGG + Chr8:68171704-68171723 MsG0880046040.01.T01:intron 20.0%
!!! TTTTTTTGAAGAAGCTAAAT+TGG - Chr8:68171198-68171217 None:intergenic 20.0%
! AAAAATATCAAACTTGGTAC+TGG - Chr8:68171627-68171646 None:intergenic 25.0%
! AAAACAGAACCAAATATGAT+AGG - Chr8:68171716-68171735 None:intergenic 25.0%
! AACTAGTTATTATGGCTTAT+GGG + Chr8:68171554-68171573 MsG0880046040.01.T01:intron 25.0%
! AATAAAGTAAACTTGTAGAC+AGG - Chr8:68172446-68172465 None:intergenic 25.0%
! AATGTGAACATGTTTAGTAT+TGG - Chr8:68172412-68172431 None:intergenic 25.0%
! ATCAAATAAGCAACCAAATA+AGG - Chr8:68171986-68172005 None:intergenic 25.0%
! CACATTAACATTGATGTATA+CGG - Chr8:68170686-68170705 None:intergenic 25.0%
! CCTAATTCAATAGTTATATG+AGG - Chr8:68170853-68170872 None:intergenic 25.0%
! CCTCATATAACTATTGAATT+AGG + Chr8:68170850-68170869 MsG0880046040.01.T01:intron 25.0%
! CTATATATAATTGGTAGGTA+AGG - Chr8:68171761-68171780 None:intergenic 25.0%
! GTTTACTTTATTCATTTGAC+AGG + Chr8:68172454-68172473 MsG0880046040.01.T01:intron 25.0%
! TACATGTTATTATAGAGTAG+AGG + Chr8:68172330-68172349 MsG0880046040.01.T01:intron 25.0%
! TCTCTAGATTGATATATGTT+TGG + Chr8:68171938-68171957 MsG0880046040.01.T01:intron 25.0%
! TTATAAATAAGAGAAGACCA+AGG - Chr8:68171351-68171370 None:intergenic 25.0%
! TTGAATGAGTACAATAAAGA+AGG + Chr8:68171244-68171263 MsG0880046040.01.T01:intron 25.0%
! TTTCAAGATTAGAATGAGAA+TGG - Chr8:68172269-68172288 None:intergenic 25.0%
!! AAGGATTCTACTTCATTTTA+AGG - Chr8:68171028-68171047 None:intergenic 25.0%
!! TGGATTTTCATATACTTTAG+GGG + Chr8:68171501-68171520 MsG0880046040.01.T01:intron 25.0%
!! TTAACTACTATAGTGGAAAA+GGG - Chr8:68172819-68172838 None:intergenic 25.0%
!! TTGTTGGTGTTTCAATTTAA+GGG + Chr8:68172700-68172719 MsG0880046040.01.T01:intron 25.0%
!! TTTGTTCCATTTCATTTTCA+GGG + Chr8:68172931-68172950 MsG0880046040.01.T01:intron 25.0%
!! TTTGTTGGTGTTTCAATTTA+AGG + Chr8:68172699-68172718 MsG0880046040.01.T01:intron 25.0%
!! TTTTGTTCCATTTCATTTTC+AGG + Chr8:68172930-68172949 MsG0880046040.01.T01:intron 25.0%
!!! CGCATTCATATTTTAATAAC+TGG - Chr8:68172580-68172599 None:intergenic 25.0%
!!! GATGGATTTTCATATACTTT+AGG + Chr8:68171499-68171518 MsG0880046040.01.T01:intron 25.0%
AAAAAATATCCTCTCTCCTA+CGG - Chr8:68171657-68171676 None:intergenic 30.0%
AAATATCTTCGTTCTGTTGT+AGG - Chr8:68172757-68172776 None:intergenic 30.0%
AAATTTATCTTCCCTCCTAT+TGG + Chr8:68171836-68171855 MsG0880046040.01.T01:intron 30.0%
AACAGAGAAATAAGAGACAT+TGG - Chr8:68172894-68172913 None:intergenic 30.0%
AATATCTTCGTTCTGTTGTA+GGG - Chr8:68172756-68172775 None:intergenic 30.0%
AATGAGTCAAAGAGCTTAAA+GGG - Chr8:68171402-68171421 None:intergenic 30.0%
AATTAGAGAGAATCTAGAGA+AGG + Chr8:68171270-68171289 MsG0880046040.01.T01:intron 30.0%
AATTTATCTTCCCTCCTATT+GGG + Chr8:68171837-68171856 MsG0880046040.01.T01:intron 30.0%
AGATGATTAATTCAAACCTC+AGG - Chr8:68170617-68170636 None:intergenic 30.0%
AGGCAGTAATTTGAAAAAGA+TGG + Chr8:68170920-68170939 MsG0880046040.01.T01:intron 30.0%
ATCCATGTATAGTTGAAGTA+CGG + Chr8:68171791-68171810 MsG0880046040.01.T01:intron 30.0%
ATGTTATTATAGAGTAGAGG+AGG + Chr8:68172333-68172352 MsG0880046040.01.T01:intron 30.0%
ATTGGAGGGAATAATAGTTT+AGG + Chr8:68171581-68171600 MsG0880046040.01.T01:intron 30.0%
CAATATGGGAAATATGAATG+TGG - Chr8:68171378-68171397 None:intergenic 30.0%
CAGGAAATAAGACATTGAAT+TGG + Chr8:68172473-68172492 MsG0880046040.01.T01:intron 30.0%
CTTAACTACTTGTTTGTGTT+AGG - Chr8:68172727-68172746 None:intergenic 30.0%
GAACTAGTTATTATGGCTTA+TGG + Chr8:68171553-68171572 MsG0880046040.01.T01:intron 30.0%
GCAATTGGAAAAGAATCTAA+CGG + Chr8:68170270-68170289 MsG0880046040.01.T01:five_prime_UTR 30.0%
GTAGTTGTTAACTACTATAG+TGG - Chr8:68172826-68172845 None:intergenic 30.0%
TAATGAGTCAAAGAGCTTAA+AGG - Chr8:68171403-68171422 None:intergenic 30.0%
TAGATCATGTAATGCATCAT+TGG + Chr8:68171887-68171906 MsG0880046040.01.T01:intron 30.0%
TAGTTTAGGGACTAAATTGA+TGG + Chr8:68171595-68171614 MsG0880046040.01.T01:intron 30.0%
TATAGTAGTTAACAACTACG+AGG + Chr8:68172827-68172846 MsG0880046040.01.T01:intron 30.0%
TCTCTGCTATTAAGATGTTA+GGG + Chr8:68171468-68171487 MsG0880046040.01.T01:intron 30.0%
TTCTTTAGCATCATTGAAGA+TGG - Chr8:68172227-68172246 None:intergenic 30.0%
TTGAAAAAGATGGAAGTGAT+TGG + Chr8:68170930-68170949 MsG0880046040.01.T01:intron 30.0%
TTGGAGGGAATAATAGTTTA+GGG + Chr8:68171582-68171601 MsG0880046040.01.T01:intron 30.0%
TTTGACTCATTATAGCTACA+TGG + Chr8:68171411-68171430 MsG0880046040.01.T01:intron 30.0%
! AATGTCTCTTATTTCTCTGT+TGG + Chr8:68172893-68172912 MsG0880046040.01.T01:intron 30.0%
! GACAGATTTTCATATGCTTT+AGG + Chr8:68171531-68171550 MsG0880046040.01.T01:intron 30.0%
! GTTAACTACTATAGTGGAAA+AGG - Chr8:68172820-68172839 None:intergenic 30.0%
! TGCGGCTTTGTATTAATAAA+TGG - Chr8:68170422-68170441 None:intergenic 30.0%
!! CGAAGATATTTTTCAGCTTA+TGG + Chr8:68172766-68172785 MsG0880046040.01.T01:intron 30.0%
!! GATATTTTTAACATACCCGT+AGG + Chr8:68171638-68171657 MsG0880046040.01.T01:intron 30.0%
!! GCTTTAGGAACTAGTTATTA+TGG + Chr8:68171546-68171565 MsG0880046040.01.T01:intron 30.0%
!!! TTGGTTTTTTATGCTATTCC+TGG + Chr8:68171957-68171976 MsG0880046040.01.T01:intron 30.0%
AAAAATATCCTCTCTCCTAC+GGG - Chr8:68171656-68171675 None:intergenic 35.0%
AATCGAACAACAACTACTAC+TGG - Chr8:68170399-68170418 None:intergenic 35.0%
AATCTAGAGAGAAACAGAAG+CGG - Chr8:68171928-68171947 None:intergenic 35.0%
AGAAACTCAAGATGAAGATG+AGG + Chr8:68172999-68173018 MsG0880046040.01.T01:CDS 35.0%
ATCCGTACTTCAACTATACA+TGG - Chr8:68171796-68171815 None:intergenic 35.0%
ATCGAACAACAACTACTACT+GGG - Chr8:68170398-68170417 None:intergenic 35.0%
ATGAGTCAAAGAGCTTAAAG+GGG - Chr8:68171401-68171420 None:intergenic 35.0%
ATGCATTACATGATCTACAC+AGG - Chr8:68171884-68171903 None:intergenic 35.0%
CAGCAGTATGCAATATATAC+TGG - Chr8:68170732-68170751 None:intergenic 35.0%
CATCATTGAAGATGGTTGAT+GGG - Chr8:68172219-68172238 None:intergenic 35.0%
CTACTTCAAGATCAGAGTAT+GGG - Chr8:68172981-68173000 None:intergenic 35.0%
CTATTCCTGGTTTCCTTATT+TGG + Chr8:68171970-68171989 MsG0880046040.01.T01:intron 35.0%
CTTCAATGATGCTAAAGAAG+AGG + Chr8:68172228-68172247 MsG0880046040.01.T01:intron 35.0%
GCATAACCCTGAAAATGAAA+TGG - Chr8:68172940-68172959 None:intergenic 35.0%
GGGCCATTACAAATTACATA+TGG - Chr8:68171740-68171759 None:intergenic 35.0%
GTCTCTGCTATTAAGATGTT+AGG + Chr8:68171467-68171486 MsG0880046040.01.T01:intron 35.0%
TAAACGTGTTTGTGTCGTAT+TGG + Chr8:68170959-68170978 MsG0880046040.01.T01:intron 35.0%
TAATTCAAACCTCAGGTACA+AGG - Chr8:68170610-68170629 None:intergenic 35.0%
TCTACTTCAAGATCAGAGTA+TGG - Chr8:68172982-68173001 None:intergenic 35.0%
TTGGAAAAGAATCTAACGGT+TGG + Chr8:68170274-68170293 MsG0880046040.01.T01:five_prime_UTR 35.0%
! ATTTCCATGCGTTATTTCCT+TGG + Chr8:68171331-68171350 MsG0880046040.01.T01:intron 35.0%
! GTCTACTCAAACTCATTTTC+TGG + Chr8:68172636-68172655 MsG0880046040.01.T01:intron 35.0%
! TTATGGCTTATGGGCTAAAT+TGG + Chr8:68171563-68171582 MsG0880046040.01.T01:intron 35.0%
! TTTTCTACACATGCAACATC+TGG - Chr8:68170655-68170674 None:intergenic 35.0%
!! AAAAGGGTGTTCATAGCAAA+TGG - Chr8:68172803-68172822 None:intergenic 35.0%
!! GATGTTAGGGATTAAGTTGA+TGG + Chr8:68171481-68171500 MsG0880046040.01.T01:intron 35.0%
!!! GTTTTAGAAGGAAGAGATTG+CGG - Chr8:68170440-68170459 None:intergenic 35.0%
AAGACCAAGGAAATAACGCA+TGG - Chr8:68171338-68171357 None:intergenic 40.0%
AAGAGCTTAAAGGGGCAATA+TGG - Chr8:68171393-68171412 None:intergenic 40.0%
ACTACTGGGAATTCGAAGAA+GGG - Chr8:68170384-68170403 None:intergenic 40.0%
AGAGCTTAAAGGGGCAATAT+GGG - Chr8:68171392-68171411 None:intergenic 40.0%
AGCAACCAAATAAGGAAACC+AGG - Chr8:68171978-68171997 None:intergenic 40.0%
GCATCATTGAAGATGGTTGA+TGG - Chr8:68172220-68172239 None:intergenic 40.0%
GCGCTGTTCGTATAAAGAAT+GGG + Chr8:68172035-68172054 MsG0880046040.01.T01:CDS 40.0%
TAACGGAAGCAAACGATTAC+CGG + Chr8:68170513-68170532 MsG0880046040.01.T01:CDS 40.0%
TACCTAACACGATCATGACA+CGG + Chr8:68170885-68170904 MsG0880046040.01.T01:intron 40.0%
TACTACTGGGAATTCGAAGA+AGG - Chr8:68170385-68170404 None:intergenic 40.0%
TGAACTGTGACCTTATGAGT+TGG - Chr8:68170557-68170576 None:intergenic 40.0%
TGCGCTGTTCGTATAAAGAA+TGG + Chr8:68172034-68172053 MsG0880046040.01.T01:CDS 40.0%
TGGGAAAATTAAACAGCCAG+AGG + Chr8:68172054-68172073 MsG0880046040.01.T01:CDS 40.0%
TTGGTCTAGACACCAATAGA+TGG + Chr8:68170978-68170997 MsG0880046040.01.T01:intron 40.0%
! AATCTAGAGAAGGAGAGTAC+AGG + Chr8:68171280-68171299 MsG0880046040.01.T01:intron 40.0%
! ACACCAATAGATGGAAGTGT+CGG + Chr8:68170987-68171006 MsG0880046040.01.T01:intron 40.0%
! ATTCTCACCGGTGTCAATTT+AGG + Chr8:68171168-68171187 MsG0880046040.01.T01:intron 40.0%
! GAGTACTGTTTGTGAAATGC+AGG + Chr8:68170705-68170724 MsG0880046040.01.T01:intron 40.0%
AAAGTAAGTACCATGCCTGC+AGG - Chr8:68170782-68170801 None:intergenic 45.0%
AACGATTACCGGTATCCTAG+TGG + Chr8:68170524-68170543 MsG0880046040.01.T01:CDS 45.0%
ACAGTTCACGATAGACAACG+AGG + Chr8:68170569-68170588 MsG0880046040.01.T01:CDS 45.0%
ACGTACCTGCTCTCTCAATT+CGG - Chr8:68172095-68172114 None:intergenic 45.0%
AGTAGCAATGCATGATGCTC+TGG + Chr8:68172167-68172186 MsG0880046040.01.T01:intron 45.0%
CACAGCTAATGAACCCACTT+GGG + Chr8:68171085-68171104 MsG0880046040.01.T01:intron 45.0%
CTACTGGGAATTCGAAGAAG+GGG - Chr8:68170383-68170402 None:intergenic 45.0%
CTGACACGCACATAACTTAC+GGG - Chr8:68170319-68170338 None:intergenic 45.0%
GCTGACACGCACATAACTTA+CGG - Chr8:68170320-68170339 None:intergenic 45.0%
TCACAGCTAATGAACCCACT+TGG + Chr8:68171084-68171103 MsG0880046040.01.T01:intron 45.0%
TCACGAATTCCTTGTACCTG+AGG + Chr8:68170598-68170617 MsG0880046040.01.T01:CDS 45.0%
TGATTGTCGACGTTCCCAAT+AGG - Chr8:68171854-68171873 None:intergenic 45.0%
TTAACATACCCGTAGGAGAG+AGG + Chr8:68171645-68171664 MsG0880046040.01.T01:intron 45.0%
! GGCTTATGGGCTAAATTGGA+GGG + Chr8:68171567-68171586 MsG0880046040.01.T01:intron 45.0%
! TCACCGGTGTCAATTTAGGT+GGG + Chr8:68171172-68171191 MsG0880046040.01.T01:intron 45.0%
! TGGCTTATGGGCTAAATTGG+AGG + Chr8:68171566-68171585 MsG0880046040.01.T01:intron 45.0%
! TGGTGATGCTCCAACTCATA+AGG + Chr8:68170544-68170563 MsG0880046040.01.T01:CDS 45.0%
! TTTGCTTCCGTTAGTCTCAC+CGG - Chr8:68170506-68170525 None:intergenic 45.0%
!! ATTAAACAGCCAGAGGCACT+TGG + Chr8:68172061-68172080 MsG0880046040.01.T01:CDS 45.0%
!! TTAAACAGCCAGAGGCACTT+GGG + Chr8:68172062-68172081 MsG0880046040.01.T01:CDS 45.0%
ACGATCATGACACGGACACA+TGG + Chr8:68170893-68170912 MsG0880046040.01.T01:intron 50.0%
AGCAATGCATGATGCTCTGG+AGG + Chr8:68172170-68172189 MsG0880046040.01.T01:intron 50.0%
AGCTAATGAACCCACTTGGG+TGG + Chr8:68171088-68171107 MsG0880046040.01.T01:intron 50.0%
ATCTGCCGAATTGAGAGAGC+AGG + Chr8:68172087-68172106 MsG0880046040.01.T01:CDS 50.0%
GAGCATCACCACTAGGATAC+CGG - Chr8:68170535-68170554 None:intergenic 50.0%
GTCCGTGTCATGATCGTGTT+AGG - Chr8:68170890-68170909 None:intergenic 50.0%
GTCTCAGGTTCGATTCTCAC+CGG + Chr8:68171156-68171175 MsG0880046040.01.T01:intron 50.0%
TAAAACCCTCCGCAAGTCGA+CGG + Chr8:68170454-68170473 MsG0880046040.01.T01:CDS 50.0%
TAGAGTAGAGGAGGACGAAG+TGG + Chr8:68172342-68172361 MsG0880046040.01.T01:intron 50.0%
TCAAACGCCGGTGAGACTAA+CGG + Chr8:68170496-68170515 MsG0880046040.01.T01:CDS 50.0%
TGGCCCACCTAAATTGACAC+CGG - Chr8:68171178-68171197 None:intergenic 50.0%
TGTCGACGTTCCCAATAGGA+GGG - Chr8:68171850-68171869 None:intergenic 50.0%
TTGTCGACGTTCCCAATAGG+AGG - Chr8:68171851-68171870 None:intergenic 50.0%
! CTCACCGGTGTCAATTTAGG+TGG + Chr8:68171171-68171190 MsG0880046040.01.T01:intron 50.0%
! GCACCGACACTTCCATCTAT+TGG - Chr8:68170993-68171012 None:intergenic 50.0%
! TGAGTTGGAGCATCACCACT+AGG - Chr8:68170542-68170561 None:intergenic 50.0%
!! TGGCCTAGTGGTATTGGCTT+GGG + Chr8:68171108-68171127 MsG0880046040.01.T01:intron 50.0%
!!! GACTTGCGGAGGGTTTTAGA+AGG - Chr8:68170452-68170471 None:intergenic 50.0%
AGTAGAGGAGGACGAAGTGG+TGG + Chr8:68172345-68172364 MsG0880046040.01.T01:intron 55.0%
ATACCACTAGGCCACCCAAG+TGG - Chr8:68171102-68171121 None:intergenic 55.0%
ATGCCTGCAGGCGAATGGAA+GGG - Chr8:68170770-68170789 None:intergenic 55.0%
CTTGGGTGGCCTAGTGGTAT+TGG + Chr8:68171102-68171121 MsG0880046040.01.T01:intron 55.0%
GAATCGAACCTGAGACCTCG+AGG - Chr8:68171152-68171171 None:intergenic 55.0%
GCAGATATCCCAAGTGCCTC+TGG - Chr8:68172073-68172092 None:intergenic 55.0%
GGACGAAGTGGTGGTTGTAG+TGG + Chr8:68172354-68172373 MsG0880046040.01.T01:intron 55.0%
GGTCCCAAGCCAATACCACT+AGG - Chr8:68171114-68171133 None:intergenic 55.0%
TACCACTAGGCCACCCAAGT+GGG - Chr8:68171101-68171120 None:intergenic 55.0%
TTACCCTTCCATTCGCCTGC+AGG + Chr8:68170764-68170783 MsG0880046040.01.T01:CDS 55.0%
!! AGTGGTATTGGCTTGGGACC+TGG + Chr8:68171114-68171133 MsG0880046040.01.T01:intron 55.0%
!! GTGGCCTAGTGGTATTGGCT+TGG + Chr8:68171107-68171126 MsG0880046040.01.T01:intron 55.0%
!! GTGGTATTGGCTTGGGACCT+GGG + Chr8:68171115-68171134 MsG0880046040.01.T01:intron 55.0%
AACCCACTTGGGTGGCCTAG+TGG + Chr8:68171096-68171115 MsG0880046040.01.T01:intron 60.0%
AGCGACGGAGCTTCAAACGC+CGG + Chr8:68170484-68170503 MsG0880046040.01.T01:CDS 60.0%
CATGCCTGCAGGCGAATGGA+AGG - Chr8:68170771-68170790 None:intergenic 60.0%
CTTCCATTCGCCTGCAGGCA+TGG + Chr8:68170769-68170788 MsG0880046040.01.T01:CDS 60.0%
GTACCATGCCTGCAGGCGAA+TGG - Chr8:68170775-68170794 None:intergenic 60.0%
TCGAACCTGAGACCTCGAGG+AGG - Chr8:68171149-68171168 None:intergenic 60.0%
TGACACGGACACATGGACGC+AGG + Chr8:68170900-68170919 MsG0880046040.01.T01:intron 60.0%
AACCCTCCGCAAGTCGACGG+TGG + Chr8:68170457-68170476 MsG0880046040.01.T01:CDS 65.0%
GTGCTCCTCCTCGAGGTCTC+AGG + Chr8:68171141-68171160 MsG0880046040.01.T01:intron 65.0%
! TCGAGGAGGAGCACACTCCC+AGG - Chr8:68171135-68171154 None:intergenic 65.0%
! TGGGAGTGTGCTCCTCCTCG+AGG + Chr8:68171134-68171153 MsG0880046040.01.T01:intron 65.0%
!! CTGCTGCCACCGTCGACTTG+CGG - Chr8:68170466-68170485 None:intergenic 65.0%
!! TGCCACCGTCGACTTGCGGA+GGG - Chr8:68170462-68170481 None:intergenic 65.0%
GTCGACGGTGGCAGCAGCGA+CGG + Chr8:68170469-68170488 MsG0880046040.01.T01:CDS 70.0%
!! CTGCCACCGTCGACTTGCGG+AGG - Chr8:68170463-68170482 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr8 gene 68170260 68173062 68170260 ID=MsG0880046040.01;Name=MsG0880046040.01
Chr8 mRNA 68170260 68173062 68170260 ID=MsG0880046040.01.T01;Parent=MsG0880046040.01;Name=MsG0880046040.01.T01;_AED=0.46;_eAED=0.50;_QI=111|1|0.75|1|1|1|4|0|170
Chr8 exon 68170260 68170619 68170260 ID=MsG0880046040.01.T01:exon:12806;Parent=MsG0880046040.01.T01
Chr8 exon 68170727 68170790 68170727 ID=MsG0880046040.01.T01:exon:12807;Parent=MsG0880046040.01.T01
Chr8 exon 68172020 68172108 68172020 ID=MsG0880046040.01.T01:exon:12808;Parent=MsG0880046040.01.T01
Chr8 exon 68172952 68173062 68172952 ID=MsG0880046040.01.T01:exon:12809;Parent=MsG0880046040.01.T01
Chr8 five_prime_UTR 68170260 68170370 68170260 ID=MsG0880046040.01.T01:five_prime_utr;Parent=MsG0880046040.01.T01
Chr8 CDS 68170371 68170619 68170371 ID=MsG0880046040.01.T01:cds;Parent=MsG0880046040.01.T01
Chr8 CDS 68170727 68170790 68170727 ID=MsG0880046040.01.T01:cds;Parent=MsG0880046040.01.T01
Chr8 CDS 68172020 68172108 68172020 ID=MsG0880046040.01.T01:cds;Parent=MsG0880046040.01.T01
Chr8 CDS 68172952 68173062 68172952 ID=MsG0880046040.01.T01:cds;Parent=MsG0880046040.01.T01
Gene Sequence

>MsG0880046040.01.T01

ATGGCGCTACCCCTTCTTCGAATTCCCAGTAGTAGTTGTTGTTCGATTCCATTTATTAATACAAAGCCGCAATCTCTTCCTTCTAAAACCCTCCGCAAGTCGACGGTGGCAGCAGCGACGGAGCTTCAAACGCCGGTGAGACTAACGGAAGCAAACGATTACCGGTATCCTAGTGGTGATGCTCCAACTCATAAGGTCACAGTTCACGATAGACAACGAGGAGTTGTTCACGAATTCCTTGTACCTGAGGACCAGTATATATTGCATACTGCTGAGTCTCAGAATATTACCCTTCCATTCGCCTGCAGGCATGGTTGTTGTACTAGTTGCGCTGTTCGTATAAAGAATGGGAAAATTAAACAGCCAGAGGCACTTGGGATATCTGCCGAATTGAGAGAGCAGGGTTATGCACTTCTTTGTGTGAGTTTCCCATACTCTGATCTTGAAGTAGAAACTCAAGATGAAGATGAGGTAACAAGCAAAATTATAATCATAACTTTCATTTTATGGTAA

Protein sequence

>MsG0880046040.01.T01

MALPLLRIPSSSCCSIPFINTKPQSLPSKTLRKSTVAAATELQTPVRLTEANDYRYPSGDAPTHKVTVHDRQRGVVHEFLVPEDQYILHTAESQNITLPFACRHGCCTSCAVRIKNGKIKQPEALGISAELREQGYALLCVSFPYSDLEVETQDEDEVTSKIIIITFILW*