AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380012157.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012157.01.T01 MTR_3g015440 91.304 230 19 1 14 243 3 231 1.29e-155 432
MsG0380012157.01.T01 MTR_3g015440 90.957 188 16 1 14 201 3 189 5.90e-124 352
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380012157.01.T01 AT3G17670 55.825 206 82 1 44 240 16 221 4.67e-78 236
MsG0380012157.01.T01 AT3G17670 55.610 205 82 1 44 239 16 220 9.48e-78 234

Find 89 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTGCTGTTGATGTGCTTTGT+TGG 0.190100 3:+11751400 None:intergenic
CTGCCAAGGTGATGCCTATT+TGG 0.221186 3:-11749504 MsG0380012157.01.T01:CDS
GGTGCACACCCGTATTTCTT+TGG 0.222264 3:+11751373 None:intergenic
TGTAAAGTCGTCCGGTTGTT+TGG 0.280464 3:-11751276 MsG0380012157.01.T01:CDS
AATTAATATATATACATATC+TGG 0.309788 3:+11751541 None:intergenic
CGGGACGGCTGCTCGTTGTT+TGG 0.315956 3:-11751192 MsG0380012157.01.T01:CDS
GTCATCAGTAAGGCTGGAAT+TGG 0.327574 3:-11750690 MsG0380012157.01.T01:CDS
GCTATAGATTTAAAACCATT+TGG 0.341600 3:-11750825 MsG0380012157.01.T01:CDS
GTGCACACCCGTATTTCTTT+GGG 0.344936 3:+11751374 None:intergenic
GGCATTGAACAAATTCGATT+TGG 0.354216 3:-11749483 MsG0380012157.01.T01:CDS
GAATTTGTTCAATGCCAAAT+AGG 0.361120 3:+11749490 None:intergenic
AGAAGGGAAATGGATAATTA+AGG 0.375837 3:+11751576 None:intergenic
TTGGAGGTGGAGAAGGGAAA+TGG 0.385008 3:+11751566 None:intergenic
TTGGGTCACCTCTGAATACT+TGG 0.395476 3:+11750616 None:intergenic
ACCTCATCATCCGCTATTGC+GGG 0.397200 3:-11751211 MsG0380012157.01.T01:CDS
TGGATAATTAAGGATAGAAT+TGG 0.398283 3:+11751586 None:intergenic
GTAAAGTCGTCCGGTTGTTT+GGG 0.401107 3:-11751275 MsG0380012157.01.T01:CDS
GACGACTTTACAGTGACGTT+TGG 0.402035 3:+11751287 None:intergenic
GAGACCATGGTAAGTCTGTT+TGG 0.410408 3:-11751170 MsG0380012157.01.T01:CDS
GCCAGCTTCGTTTGTGTGAT+GGG 0.421014 3:+11751435 None:intergenic
TGCTCTTGCTTTGAGGAAGA+AGG 0.433872 3:-11751126 MsG0380012157.01.T01:CDS
AAAAGACTGTGGGATTGAAT+TGG 0.440659 3:+11751482 None:intergenic
TGGTGGAGGAGATAATAGTT+TGG 0.444099 3:-11751150 MsG0380012157.01.T01:CDS
CGATATTCAGGTCATCAGTA+AGG 0.449045 3:-11750700 MsG0380012157.01.T01:intron
AGCAGCAGCCCAAAGAAATA+CGG 0.449885 3:-11751382 MsG0380012157.01.T01:CDS
TAGCGGATGATGAGGTAATC+AGG 0.450567 3:+11751218 None:intergenic
AATTGGCGTGGATGCGGTTA+CGG 0.452811 3:+11751499 None:intergenic
TCAGGAAGGACCACCAGGTT+AGG 0.453888 3:+11751236 None:intergenic
GCTGGAATTGGGAAACTACT+TGG 0.454976 3:-11750678 MsG0380012157.01.T01:CDS
GTTTGGATGCTCTTGCTTTG+AGG 0.461598 3:-11751133 MsG0380012157.01.T01:CDS
GTGTGGTGCTGGTCCTAACC+TGG 0.464290 3:-11751249 MsG0380012157.01.T01:CDS
TTGATGTGCTTTGTTGGTGC+AGG 0.470621 3:+11751406 None:intergenic
GAGGGTTTCTAGAGTTTGAA+AGG 0.472361 3:+11751325 None:intergenic
GACTTTACAGTGACGTTTGG+AGG 0.475603 3:+11751290 None:intergenic
ACCACACTTACCCAAACAAC+CGG 0.476603 3:+11751265 None:intergenic
CCGTCAGTCTAAATCATTCA+AGG 0.480103 3:-11749417 MsG0380012157.01.T01:CDS
AGCCAGCTTCGTTTGTGTGA+TGG 0.481463 3:+11751434 None:intergenic
AAAGGATCCTTGTTTGCGGC+AGG 0.482679 3:+11751343 None:intergenic
TATATATACATATCTGGAGT+TGG 0.484958 3:+11751547 None:intergenic
CCCCATCACACAAACGAAGC+TGG 0.487167 3:-11751436 MsG0380012157.01.T01:CDS
TTGTTTGCGGCAGGCACGGT+TGG 0.493358 3:+11751352 None:intergenic
ATCCTTGTTTGCGGCAGGCA+CGG 0.497473 3:+11751348 None:intergenic
ATTCAGGTCATCAGTAAGGC+TGG 0.499086 3:-11750696 MsG0380012157.01.T01:intron
TACATATCTGGAGTTGGAGG+TGG 0.503140 3:+11751553 None:intergenic
TCTGGAGTTGGAGGTGGAGA+AGG 0.504411 3:+11751559 None:intergenic
GGATAGAATTGGCGTGGATG+CGG 0.513125 3:+11751597 None:intergenic
GGTAATCAGGAAGGACCACC+AGG 0.515194 3:+11751231 None:intergenic
CTGGAGTTGGAGGTGGAGAA+GGG 0.516281 3:+11751560 None:intergenic
TGTTTGGGTAAGTGTGGTGC+TGG 0.522227 3:-11751260 MsG0380012157.01.T01:CDS
AACGTCACTGTAAAGTCGTC+CGG 0.523231 3:-11751284 MsG0380012157.01.T01:CDS
TCATCAGTAAGGCTGGAATT+GGG 0.533275 3:-11750689 MsG0380012157.01.T01:CDS
TACCTCATCATCCGCTATTG+CGG 0.534019 3:-11751212 MsG0380012157.01.T01:CDS
CAAACTCTAGAAACCCTCTC+TGG 0.534184 3:-11751320 MsG0380012157.01.T01:CDS
AACCGTGCCTGCCGCAAACA+AGG 0.534436 3:-11751350 MsG0380012157.01.T01:CDS
TACATGTCACATTTAAATGC+AGG 0.537041 3:-11750797 MsG0380012157.01.T01:intron
GTGACATGTATACCTCCAAA+TGG 0.541166 3:+11750810 None:intergenic
AAGCCTCCTTAGCATCTTCG+AGG 0.542993 3:+11750651 None:intergenic
ATAGATTTAAAACCATTTGG+AGG 0.543444 3:-11750822 MsG0380012157.01.T01:CDS
TTTGAAAGGATCCTTGTTTG+CGG 0.546105 3:+11751339 None:intergenic
TGCTCGTTGTTTGGAGACCA+TGG 0.558612 3:-11751183 MsG0380012157.01.T01:CDS
GGGTGCCCTCGAAGATGCTA+AGG 0.560777 3:-11750657 MsG0380012157.01.T01:CDS
TTGCAGGCTTATATCTGCCA+AGG 0.574318 3:-11749518 MsG0380012157.01.T01:intron
GGATTGAATTGGCGTGGATG+CGG 0.576414 3:+11751493 None:intergenic
GCAGCAGCCCAAAGAAATAC+GGG 0.579170 3:-11751381 MsG0380012157.01.T01:CDS
TGGAGGAGCGATGCCAGAGA+GGG 0.581274 3:+11751307 None:intergenic
GAGCAGCCGTCCCGCAATAG+CGG 0.581813 3:+11751201 None:intergenic
TGGGTCACCTCTGAATACTT+GGG 0.585710 3:+11750617 None:intergenic
CTGGAATTGGGAAACTACTT+GGG 0.586591 3:-11750677 MsG0380012157.01.T01:CDS
ATGGTAAGTCTGTTTGGTGG+AGG 0.589868 3:-11751164 MsG0380012157.01.T01:CDS
GATTTAGACTGACGGATCGA+AGG 0.592838 3:+11749425 None:intergenic
CCAGCTTCGTTTGTGTGATG+GGG 0.596762 3:+11751436 None:intergenic
ATATACATATCTGGAGTTGG+AGG 0.599847 3:+11751550 None:intergenic
ACCATGGTAAGTCTGTTTGG+TGG 0.604006 3:-11751167 MsG0380012157.01.T01:CDS
AATTAAGGATAGAATTGGCG+TGG 0.610172 3:+11751591 None:intergenic
TCCCGCAATAGCGGATGATG+AGG 0.621652 3:+11751210 None:intergenic
TCCGGTTGTTTGGGTAAGTG+TGG 0.623101 3:-11751266 MsG0380012157.01.T01:CDS
CCTTGAATGATTTAGACTGA+CGG 0.623941 3:+11749417 None:intergenic
TGCCCTCGAAGATGCTAAGG+AGG 0.624073 3:-11750654 MsG0380012157.01.T01:CDS
TACCTGCGAGAGCAAAAGCT+CGG 0.642802 3:+11751067 None:intergenic
GGATGATGAGGTAATCAGGA+AGG 0.643225 3:+11751222 None:intergenic
TCCACCAAACAGACTTACCA+TGG 0.651181 3:+11751166 None:intergenic
ATGCCAAATAGGCATCACCT+TGG 0.656793 3:+11749501 None:intergenic
ATTAGCTCCCAAGTATTCAG+AGG 0.657616 3:-11750624 MsG0380012157.01.T01:intron
AGCCTCCTTAGCATCTTCGA+GGG 0.657655 3:+11750652 None:intergenic
TGGTGCTGGTCCTAACCTGG+TGG 0.660536 3:-11751246 MsG0380012157.01.T01:CDS
TGTGCTTTGTTGGTGCAGGA+AGG 0.666251 3:+11751410 None:intergenic
CATCATCCGCTATTGCGGGA+CGG 0.668576 3:-11751207 MsG0380012157.01.T01:CDS
TTGGAGGAGCGATGCCAGAG+AGG 0.677844 3:+11751306 None:intergenic
ACTGTGGGATTGAATTGGCG+TGG 0.692966 3:+11751487 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATTAATATATATACATATC+TGG + Chr3:11749475-11749494 None:intergenic 10.0%
!! CAAAATTATTATATGTATAT+TGG - Chr3:11750255-11750274 MsG0380012157.01.T01:intron 10.0%
!!! TACATATAATAATTTTGATT+CGG + Chr3:11750252-11750271 None:intergenic 10.0%
!! AGAAAAGAATATGAAAATTT+GGG + Chr3:11750418-11750437 None:intergenic 15.0%
!! ATTTGTAATAACAAGTTAAA+TGG - Chr3:11750662-11750681 MsG0380012157.01.T01:CDS 15.0%
!! TAGAAAAGAATATGAAAATT+TGG + Chr3:11750419-11750438 None:intergenic 15.0%
!! TCAAATACTTTATACTTATA+TGG + Chr3:11750769-11750788 None:intergenic 15.0%
!!! ACATATAATAATTTTGATTC+GGG + Chr3:11750251-11750270 None:intergenic 15.0%
!!! TTTTTTTTTTTATCCTTTTG+AGG - Chr3:11750734-11750753 MsG0380012157.01.T01:intron 15.0%
!! AATATCGAAATAAGAACAAT+TGG + Chr3:11750300-11750319 None:intergenic 20.0%
!! GATAATAGGATATTAATCTA+TGG + Chr3:11750450-11750469 None:intergenic 20.0%
!! TACTTTATACTTATATGGAA+AGG + Chr3:11750764-11750783 None:intergenic 20.0%
!!! ATAAGAATTGATTTAGCATT+CGG + Chr3:11750842-11750861 None:intergenic 20.0%
! ACAAAATTATAAGCCGATAT+TGG - Chr3:11750924-11750943 MsG0380012157.01.T01:intron 25.0%
! ATTGATGTTTGTTTAAACGT+AGG + Chr3:11751411-11751430 None:intergenic 25.0%
! GCTTGGAATTAATAATGATT+GGG - Chr3:11751131-11751150 MsG0380012157.01.T01:CDS 25.0%
! TATTTCTTTATTCACTTTGC+AGG - Chr3:11751479-11751498 MsG0380012157.01.T01:CDS 25.0%
! TGCTTGGAATTAATAATGAT+TGG - Chr3:11751130-11751149 MsG0380012157.01.T01:CDS 25.0%
! TGGATAATTAAGGATAGAAT+TGG + Chr3:11749430-11749449 None:intergenic 25.0%
!! AGTATAAAGTATTTGAAGCA+TGG - Chr3:11750773-11750792 MsG0380012157.01.T01:intron 25.0%
!! ATAGATTTAAAACCATTTGG+AGG - Chr3:11750191-11750210 MsG0380012157.01.T01:intron 25.0%
!! GCTATAGATTTAAAACCATT+TGG - Chr3:11750188-11750207 MsG0380012157.01.T01:intron 25.0%
!! TATATATACATATCTGGAGT+TGG + Chr3:11749469-11749488 None:intergenic 25.0%
!! TTCAAAACACTTGTTACATT+GGG + Chr3:11750697-11750716 None:intergenic 25.0%
!! TTGTAATTGATAAAGTGTCA+AGG + Chr3:11750626-11750645 None:intergenic 25.0%
!! TTGTTCTTATTTCGATATTC+AGG - Chr3:11750301-11750320 MsG0380012157.01.T01:intron 25.0%
!! TTTCAAAACACTTGTTACAT+TGG + Chr3:11750698-11750717 None:intergenic 25.0%
!!! TAGATTTTAGCAAGGATAAT+AGG + Chr3:11750464-11750483 None:intergenic 25.0%
!!! TTGAATCTTGAGTTATTTTG+AGG + Chr3:11750957-11750976 None:intergenic 25.0%
AAAATATGAGAAACACGCAT+GGG + Chr3:11751238-11751257 None:intergenic 30.0%
AATGACTAGAGTTTGAATCA+CGG + Chr3:11750549-11750568 None:intergenic 30.0%
AGAAGGGAAATGGATAATTA+AGG + Chr3:11749440-11749459 None:intergenic 30.0%
TACAAAGTTGACAAAAAGAG+TGG - Chr3:11751014-11751033 MsG0380012157.01.T01:intron 30.0%
TACATGTCACATTTAAATGC+AGG - Chr3:11750216-11750235 MsG0380012157.01.T01:intron 30.0%
TCTCAAATTATTAGCTGTGT+CGG - Chr3:11750026-11750045 MsG0380012157.01.T01:intron 30.0%
TGATTTAGCATTCGGAAAAT+AGG + Chr3:11750834-11750853 None:intergenic 30.0%
TTGAGGTTTGTATCCAATAT+CGG + Chr3:11750940-11750959 None:intergenic 30.0%
! AATGTCACAACAAGAGATTT+TGG - Chr3:11751309-11751328 MsG0380012157.01.T01:CDS 30.0%
! GAATTTGTTCAATGCCAAAT+AGG + Chr3:11751526-11751545 None:intergenic 30.0%
!! GTTACTAGTAGATTTTAGCA+AGG + Chr3:11750472-11750491 None:intergenic 30.0%
AAAAGACTGTGGGATTGAAT+TGG + Chr3:11749534-11749553 None:intergenic 35.0%
AACATACGATCCACATGTAT+CGG - Chr3:11751173-11751192 MsG0380012157.01.T01:CDS 35.0%
AATGATCATACCCACATTGA+TGG + Chr3:11751368-11751387 None:intergenic 35.0%
AATTAAGGATAGAATTGGCG+TGG + Chr3:11749425-11749444 None:intergenic 35.0%
AATTATACGTGTGTTAGTGC+AGG + Chr3:11749987-11750006 None:intergenic 35.0%
ACAGCTTACAAAAAGACTGT+GGG + Chr3:11749544-11749563 None:intergenic 35.0%
AGAGAAGAAAAATTTCGCTG+AGG - Chr3:11749923-11749942 MsG0380012157.01.T01:intron 35.0%
CAAAATATGAGAAACACGCA+TGG + Chr3:11751239-11751258 None:intergenic 35.0%
CCTTGAATGATTTAGACTGA+CGG + Chr3:11751599-11751618 None:intergenic 35.0%
GTCACATTTAAATGCAGGTA+TGG - Chr3:11750221-11750240 MsG0380012157.01.T01:intron 35.0%
TCCAATCACGATTTGAATCT+CGG + Chr3:11750807-11750826 None:intergenic 35.0%
TTAGTATCTTCCGATACATG+TGG + Chr3:11751186-11751205 None:intergenic 35.0%
TTGAGTTAGCATTCAGAACA+TGG + Chr3:11751212-11751231 None:intergenic 35.0%
TTGATTGATTGATGCATTGC+AGG - Chr3:11750166-11750185 MsG0380012157.01.T01:intron 35.0%
! ATATACATATCTGGAGTTGG+AGG + Chr3:11749466-11749485 None:intergenic 35.0%
! ATGTTAGTTGAAAGCATAGC+TGG + Chr3:11750144-11750163 None:intergenic 35.0%
! CATGCGTGTTTCTCATATTT+TGG - Chr3:11751237-11751256 MsG0380012157.01.T01:CDS 35.0%
! CTTTTTGTAAGCTGTCATGT+GGG - Chr3:11749549-11749568 MsG0380012157.01.T01:intron 35.0%
! GGCATTGAACAAATTCGATT+TGG - Chr3:11751530-11751549 MsG0380012157.01.T01:exon 35.0%
! TCTTTTTGTAAGCTGTCATG+TGG - Chr3:11749548-11749567 MsG0380012157.01.T01:intron 35.0%
! TTCCAAGCATGCATCTATTT+TGG + Chr3:11751119-11751138 None:intergenic 35.0%
! TTTGAAAGGATCCTTGTTTG+CGG + Chr3:11749677-11749696 None:intergenic 35.0%
! TTTTTGTAAGCTGTCATGTG+GGG - Chr3:11749550-11749569 MsG0380012157.01.T01:intron 35.0%
AAAGAGTGGCTACGAAGTTT+AGG - Chr3:11751028-11751047 MsG0380012157.01.T01:intron 40.0%
ACCGAGATTCAAATCGTGAT+TGG - Chr3:11750803-11750822 MsG0380012157.01.T01:CDS 40.0%
ATGGAAAGGTGAACCTCAAA+AGG + Chr3:11750750-11750769 None:intergenic 40.0%
ATTAGCTCCCAAGTATTCAG+AGG - Chr3:11750389-11750408 MsG0380012157.01.T01:intron 40.0%
CATAGACACCTAACAAGACA+CGG + Chr3:11750063-11750082 None:intergenic 40.0%
CCGTCAGTCTAAATCATTCA+AGG - Chr3:11751596-11751615 MsG0380012157.01.T01:five_prime_UTR 40.0%
CGAGCTTAGCTAAACTGTTA+AGG + Chr3:11750590-11750609 None:intergenic 40.0%
CGATATTCAGGTCATCAGTA+AGG - Chr3:11750313-11750332 MsG0380012157.01.T01:intron 40.0%
CTGATTGTTGCCAAAATCCA+TGG - Chr3:11751282-11751301 MsG0380012157.01.T01:CDS 40.0%
CTGGAATTGGGAAACTACTT+GGG - Chr3:11750336-11750355 MsG0380012157.01.T01:intron 40.0%
GACAGCTTACAAAAAGACTG+TGG + Chr3:11749545-11749564 None:intergenic 40.0%
GTCCAAAATAGATGCATGCT+TGG - Chr3:11751114-11751133 MsG0380012157.01.T01:CDS 40.0%
GTGACATGTATACCTCCAAA+TGG + Chr3:11750206-11750225 None:intergenic 40.0%
TCATCAGTAAGGCTGGAATT+GGG - Chr3:11750324-11750343 MsG0380012157.01.T01:intron 40.0%
TCTAGACACTAGGCTATAAG+TGG + Chr3:11750522-11750541 None:intergenic 40.0%
TGGTGGAGGAGATAATAGTT+TGG - Chr3:11749863-11749882 MsG0380012157.01.T01:intron 40.0%
TTGTTACGAGCTATGAAGCA+TGG + Chr3:11750093-11750112 None:intergenic 40.0%
! ATCATACCCACATTGATGGT+CGG + Chr3:11751364-11751383 None:intergenic 40.0%
! GTAAATGTCCGTGTCTTGTT+AGG - Chr3:11750052-11750071 MsG0380012157.01.T01:intron 40.0%
! TCACGGAATTTCTAGACACT+AGG + Chr3:11750532-11750551 None:intergenic 40.0%
!! GAGGGTTTCTAGAGTTTGAA+AGG + Chr3:11749691-11749710 None:intergenic 40.0%
AACGTCACTGTAAAGTCGTC+CGG - Chr3:11749729-11749748 MsG0380012157.01.T01:intron 45.0%
ACACTAGGCTATAAGTGGCA+AGG + Chr3:11750517-11750536 None:intergenic 45.0%
ACCACACTTACCCAAACAAC+CGG + Chr3:11749751-11749770 None:intergenic 45.0%
ACCATGGTAAGTCTGTTTGG+TGG - Chr3:11749846-11749865 MsG0380012157.01.T01:intron 45.0%
AGCAGCAGCCCAAAGAAATA+CGG - Chr3:11749631-11749650 MsG0380012157.01.T01:intron 45.0%
ATATGAGAAACACGCATGGG+AGG + Chr3:11751235-11751254 None:intergenic 45.0%
ATGCCAAATAGGCATCACCT+TGG + Chr3:11751515-11751534 None:intergenic 45.0%
ATTCAGGTCATCAGTAAGGC+TGG - Chr3:11750317-11750336 MsG0380012157.01.T01:intron 45.0%
CACACACATCATCAGTTGTC+TGG + Chr3:11750119-11750138 None:intergenic 45.0%
CGAGCTATGAAGCATGGATA+CGG + Chr3:11750087-11750106 None:intergenic 45.0%
CTGCTGTTGATGTGCTTTGT+TGG + Chr3:11749616-11749635 None:intergenic 45.0%
GACGACTTTACAGTGACGTT+TGG + Chr3:11749729-11749748 None:intergenic 45.0%
GACTTTACAGTGACGTTTGG+AGG + Chr3:11749726-11749745 None:intergenic 45.0%
GAGACCATGGTAAGTCTGTT+TGG - Chr3:11749843-11749862 MsG0380012157.01.T01:intron 45.0%
GCTGGAATTGGGAAACTACT+TGG - Chr3:11750335-11750354 MsG0380012157.01.T01:intron 45.0%
GGATGATGAGGTAATCAGGA+AGG + Chr3:11749794-11749813 None:intergenic 45.0%
GTAAAGTCGTCCGGTTGTTT+GGG - Chr3:11749738-11749757 MsG0380012157.01.T01:intron 45.0%
GTCATCAGTAAGGCTGGAAT+TGG - Chr3:11750323-11750342 MsG0380012157.01.T01:intron 45.0%
GTGCACACCCGTATTTCTTT+GGG + Chr3:11749642-11749661 None:intergenic 45.0%
GTTTGGATGCTCTTGCTTTG+AGG - Chr3:11749880-11749899 MsG0380012157.01.T01:intron 45.0%
TACCTCATCATCCGCTATTG+CGG - Chr3:11749801-11749820 MsG0380012157.01.T01:intron 45.0%
TCCACCAAACAGACTTACCA+TGG + Chr3:11749850-11749869 None:intergenic 45.0%
TGGGTCACCTCTGAATACTT+GGG + Chr3:11750399-11750418 None:intergenic 45.0%
TGTAAAGTCGTCCGGTTGTT+TGG - Chr3:11749737-11749756 MsG0380012157.01.T01:intron 45.0%
TTGCAGGCTTATATCTGCCA+AGG - Chr3:11751495-11751514 MsG0380012157.01.T01:CDS 45.0%
TTGGGTCACCTCTGAATACT+TGG + Chr3:11750400-11750419 None:intergenic 45.0%
TTGTTGTGACATTGCAGCCA+TGG + Chr3:11751302-11751321 None:intergenic 45.0%
! ATGGTAAGTCTGTTTGGTGG+AGG - Chr3:11749849-11749868 MsG0380012157.01.T01:intron 45.0%
! CAAACTCTAGAAACCCTCTC+TGG - Chr3:11749693-11749712 MsG0380012157.01.T01:intron 45.0%
! GACATTGCAGCCATGGATTT+TGG + Chr3:11751295-11751314 None:intergenic 45.0%
! GATTTAGACTGACGGATCGA+AGG + Chr3:11751591-11751610 None:intergenic 45.0%
! TACATATCTGGAGTTGGAGG+TGG + Chr3:11749463-11749482 None:intergenic 45.0%
! TAGCGGATGATGAGGTAATC+AGG + Chr3:11749798-11749817 None:intergenic 45.0%
! TTGATGTGCTTTGTTGGTGC+AGG + Chr3:11749610-11749629 None:intergenic 45.0%
!! TGCTCTTGCTTTGAGGAAGA+AGG - Chr3:11749887-11749906 MsG0380012157.01.T01:intron 45.0%
AAGCCTCCTTAGCATCTTCG+AGG + Chr3:11750365-11750384 None:intergenic 50.0%
AATTGGCGTGGATGCGGTTA+CGG + Chr3:11749517-11749536 None:intergenic 50.0%
ACAGTTTAGCTAAGCTCGCG+AGG - Chr3:11750592-11750611 MsG0380012157.01.T01:intron 50.0%
ACCTCATCATCCGCTATTGC+GGG - Chr3:11749802-11749821 MsG0380012157.01.T01:intron 50.0%
ACTGTGGGATTGAATTGGCG+TGG + Chr3:11749529-11749548 None:intergenic 50.0%
AGCCAGCTTCGTTTGTGTGA+TGG + Chr3:11749582-11749601 None:intergenic 50.0%
AGCCTCCTTAGCATCTTCGA+GGG + Chr3:11750364-11750383 None:intergenic 50.0%
CCAGCTTCGTTTGTGTGATG+GGG + Chr3:11749580-11749599 None:intergenic 50.0%
CGTGTGTTAGTGCAGGTTAC+AGG + Chr3:11749980-11749999 None:intergenic 50.0%
CTGCCAAGGTGATGCCTATT+TGG - Chr3:11751509-11751528 MsG0380012157.01.T01:CDS 50.0%
GCAGCAGCCCAAAGAAATAC+GGG - Chr3:11749632-11749651 MsG0380012157.01.T01:intron 50.0%
GCCAGCTTCGTTTGTGTGAT+GGG + Chr3:11749581-11749600 None:intergenic 50.0%
GGATAGAATTGGCGTGGATG+CGG + Chr3:11749419-11749438 None:intergenic 50.0%
GGATTGAATTGGCGTGGATG+CGG + Chr3:11749523-11749542 None:intergenic 50.0%
GGTGCACACCCGTATTTCTT+TGG + Chr3:11749643-11749662 None:intergenic 50.0%
TACCTGCGAGAGCAAAAGCT+CGG + Chr3:11749949-11749968 None:intergenic 50.0%
TCCGGTTGTTTGGGTAAGTG+TGG - Chr3:11749747-11749766 MsG0380012157.01.T01:intron 50.0%
TGCCTACCGACCATCAATGT+GGG - Chr3:11751355-11751374 MsG0380012157.01.T01:CDS 50.0%
TGCTCGTTGTTTGGAGACCA+TGG - Chr3:11749830-11749849 MsG0380012157.01.T01:intron 50.0%
TGTTTGGGTAAGTGTGGTGC+TGG - Chr3:11749753-11749772 MsG0380012157.01.T01:intron 50.0%
TTGCCTACCGACCATCAATG+TGG - Chr3:11751354-11751373 MsG0380012157.01.T01:CDS 50.0%
TTGGAGGTGGAGAAGGGAAA+TGG + Chr3:11749450-11749469 None:intergenic 50.0%
! AAAGGATCCTTGTTTGCGGC+AGG + Chr3:11749673-11749692 None:intergenic 50.0%
! TACCCACATTGATGGTCGGT+AGG + Chr3:11751360-11751379 None:intergenic 50.0%
! TGTGCTTTGTTGGTGCAGGA+AGG + Chr3:11749606-11749625 None:intergenic 50.0%
CATCATCCGCTATTGCGGGA+CGG - Chr3:11749806-11749825 MsG0380012157.01.T01:intron 55.0%
CCCCATCACACAAACGAAGC+TGG - Chr3:11749577-11749596 MsG0380012157.01.T01:intron 55.0%
CTGGAGTTGGAGGTGGAGAA+GGG + Chr3:11749456-11749475 None:intergenic 55.0%
GGTAATCAGGAAGGACCACC+AGG + Chr3:11749785-11749804 None:intergenic 55.0%
TCAGGAAGGACCACCAGGTT+AGG + Chr3:11749780-11749799 None:intergenic 55.0%
TGCCCTCGAAGATGCTAAGG+AGG - Chr3:11750359-11750378 MsG0380012157.01.T01:intron 55.0%
! ATCCTTGTTTGCGGCAGGCA+CGG + Chr3:11749668-11749687 None:intergenic 55.0%
! TCTGGAGTTGGAGGTGGAGA+AGG + Chr3:11749457-11749476 None:intergenic 55.0%
!! TCCCGCAATAGCGGATGATG+AGG + Chr3:11749806-11749825 None:intergenic 55.0%
AACCGTGCCTGCCGCAAACA+AGG - Chr3:11749663-11749682 MsG0380012157.01.T01:intron 60.0%
GGGTGCCCTCGAAGATGCTA+AGG - Chr3:11750356-11750375 MsG0380012157.01.T01:intron 60.0%
TGGAGGAGCGATGCCAGAGA+GGG + Chr3:11749709-11749728 None:intergenic 60.0%
TTGGAGGAGCGATGCCAGAG+AGG + Chr3:11749710-11749729 None:intergenic 60.0%
TTGTTTGCGGCAGGCACGGT+TGG + Chr3:11749664-11749683 None:intergenic 60.0%
!! GTGTGGTGCTGGTCCTAACC+TGG - Chr3:11749764-11749783 MsG0380012157.01.T01:intron 60.0%
!! TGGTGCTGGTCCTAACCTGG+TGG - Chr3:11749767-11749786 MsG0380012157.01.T01:intron 60.0%
CGGGACGGCTGCTCGTTGTT+TGG - Chr3:11749821-11749840 MsG0380012157.01.T01:intron 65.0%
GAGCAGCCGTCCCGCAATAG+CGG + Chr3:11749815-11749834 None:intergenic 65.0%
! GGCCGAGCTTTTGCTCTCGC+AGG - Chr3:11749944-11749963 MsG0380012157.01.T01:intron 65.0%
Chromosome Type Strat End Strand Name
Chr3 gene 11749400 11751635 11749400 ID=MsG0380012157.01;Name=MsG0380012157.01
Chr3 mRNA 11749400 11751635 11749400 ID=MsG0380012157.01.T01;Parent=MsG0380012157.01;Name=MsG0380012157.01.T01;_AED=0.46;_eAED=0.46;_QI=104|1|0.75|1|1|1|4|0|244
Chr3 exon 11749400 11749534 11749400 ID=MsG0380012157.01.T01:exon:2116;Parent=MsG0380012157.01.T01
Chr3 exon 11750625 11750712 11750625 ID=MsG0380012157.01.T01:exon:2115;Parent=MsG0380012157.01.T01
Chr3 exon 11750798 11750847 11750798 ID=MsG0380012157.01.T01:exon:2114;Parent=MsG0380012157.01.T01
Chr3 exon 11751070 11751635 11751070 ID=MsG0380012157.01.T01:exon:2113;Parent=MsG0380012157.01.T01
Chr3 five_prime_UTR 11751532 11751635 11751532 ID=MsG0380012157.01.T01:five_prime_utr;Parent=MsG0380012157.01.T01
Chr3 CDS 11751070 11751531 11751070 ID=MsG0380012157.01.T01:cds;Parent=MsG0380012157.01.T01
Chr3 CDS 11750798 11750847 11750798 ID=MsG0380012157.01.T01:cds;Parent=MsG0380012157.01.T01
Chr3 CDS 11750625 11750712 11750625 ID=MsG0380012157.01.T01:cds;Parent=MsG0380012157.01.T01
Chr3 CDS 11749400 11749534 11749400 ID=MsG0380012157.01.T01:cds;Parent=MsG0380012157.01.T01
Gene Sequence

>MsG0380012157.01.T01

ATGAATCTCACCGTAACCGCATCCACGCCAATTCAATCCCACAGTCTTTTTGTAAGCTGTCATGTGGGGACTTCCCCATCACACAAACGAAGCTGGCTTCCTTCCTGCACCAACAAAGCACATCAACAGCAGCAGCCCAAAGAAATACGGGTGTGCACCAACCGTGCCTGCCGCAAACAAGGATCCTTTCAAACTCTAGAAACCCTCTCTGGCATCGCTCCTCCAAACGTCACTGTAAAGTCGTCCGGTTGTTTGGGTAAGTGTGGTGCTGGTCCTAACCTGGTGGTCCTTCCTGATTACCTCATCATCCGCTATTGCGGGACGGCTGCTCGTTGTTTGGAGACCATGGTAAGTCTGTTTGGTGGAGGAGATAATAGTTTGGATGCTCTTGCTTTGAGGAAGAAGGCTGATGTTGAGTTAGAGAAGAAAAATTTCGCTGAGGCCGAGCTTTTGCTCTCGCAGGCTATAGATTTAAAACCATTTGGAGGTATACATGTCACATTTAAATGCAGGTCATCAGTAAGGCTGGAATTGGGAAACTACTTGGGTGCCCTCGAAGATGCTAAGGAGGCTTTGATATTAGCTCCCAAGTATTCAGAGGCTTATATCTGCCAAGGTGATGCCTATTTGGCATTGAACAAATTCGATTTGGCAGAGCAGTCATATTTAGCATGTTTAGATATAGATCCTTCGATCCGTCAGTCTAAATCATTCAAGGTAGCGTTGAATCTTTGA

Protein sequence

>MsG0380012157.01.T01

MNLTVTASTPIQSHSLFVSCHVGTSPSHKRSWLPSCTNKAHQQQQPKEIRVCTNRACRKQGSFQTLETLSGIAPPNVTVKSSGCLGKCGAGPNLVVLPDYLIIRYCGTAARCLETMVSLFGGGDNSLDALALRKKADVELEKKNFAEAELLLSQAIDLKPFGGIHVTFKCRSSVRLELGNYLGALEDAKEALILAPKYSEAYICQGDAYLALNKFDLAEQSYLACLDIDPSIRQSKSFKVALNL*