AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380017474.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017474.01.T01 MTR_3g108040 81.311 305 44 4 1 304 1 293 1.29e-159 447
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380017474.01.T01 AT5G11450 53.268 306 122 7 8 304 4 297 7.00e-99 293
MsG0380017474.01.T01 AT5G11450 53.268 306 122 7 8 304 22 315 7.99e-99 293

Find 19 sgRNAs with CRISPR-Local

Find 250 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACAAAGATCCCTGGAGATTT+TGG 0.175536 3:+96645572 MsG0380017472.01.T01:CDS
ACTGAAACGGTTGTCTCTTT+AGG 0.194094 3:+96645740 MsG0380017472.01.T01:three_prime_UTR
CTGAAACGGTTGTCTCTTTA+GGG 0.239298 3:+96645741 MsG0380017472.01.T01:three_prime_UTR
ACTCTTCAAAGAACATAATA+TGG 0.255715 3:-96645660 None:intergenic
CAACCGTTTCAGTAGGGATT+TGG 0.275099 3:-96645730 None:intergenic
GTCATCATCATTCTATCAAA+AGG 0.356945 3:-96645770 None:intergenic
ATTCATGTAGTAACCTTTGT+GGG 0.433909 3:+96645622 MsG0380017472.01.T01:three_prime_UTR
TATTCATGTAGTAACCTTTG+TGG 0.456061 3:+96645621 MsG0380017472.01.T01:three_prime_UTR
AATCTCCAGGGATCTTTGTA+TGG 0.474697 3:-96645568 None:intergenic
TTTCCAAATCCCTACTGAAA+CGG 0.480154 3:+96645727 MsG0380017472.01.T01:three_prime_UTR
TCATCATCATTCTATCAAAA+GGG 0.486686 3:-96645769 None:intergenic
TTCCTCCATACAAAGATCCC+TGG 0.524136 3:+96645563 MsG0380017472.01.T01:CDS
AAAGAGACAACCGTTTCAGT+AGG 0.566133 3:-96645737 None:intergenic
AAGAGACAACCGTTTCAGTA+GGG 0.567852 3:-96645736 None:intergenic
TCTTAAATACCTAGTCATAG+TGG 0.573279 3:+96645803 MsG0380017472.01.T01:three_prime_UTR
CTCCAGGGATCTTTGTATGG+AGG 0.613390 3:-96645565 None:intergenic
TAATTAGAACCACTATGACT+AGG 0.657996 3:-96645812 None:intergenic
ACATGAATTTCACCCCACAA+AGG 0.669412 3:-96645635 None:intergenic
TTCATGTAGTAACCTTTGTG+GGG 0.682116 3:+96645623 MsG0380017472.01.T01:three_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAACGAAAATAAAATAAAA+TGG - Chr3:96642151-96642170 None:intergenic 10.0%
!! AACTATAAATAAACAAATAA+GGG - Chr3:96642616-96642635 None:intergenic 10.0%
!! AATATCAGAAATAAATTTAA+AGG - Chr3:96644135-96644154 None:intergenic 10.0%
!! TATTTATAGTTGTTATAAAT+TGG + Chr3:96642625-96642644 MsG0380017472.01.T01:intron 10.0%
!! AAAAAATTATTAGAATGTCA+AGG - Chr3:96645473-96645492 None:intergenic 15.0%
!! AAAAAATTATTCATCTATCA+TGG + Chr3:96645247-96645266 MsG0380017472.01.T01:intron 15.0%
!! AAAAATTATTCATCTATCAT+GGG + Chr3:96645248-96645267 MsG0380017472.01.T01:intron 15.0%
!! AAAACTATAATTAAACTAGT+TGG + Chr3:96642818-96642837 MsG0380017472.01.T01:intron 15.0%
!! AAAATGATCATAAAAAATAC+TGG + Chr3:96643680-96643699 MsG0380017472.01.T01:intron 15.0%
!! CAACTATAAATAAACAAATA+AGG - Chr3:96642617-96642636 None:intergenic 15.0%
!!! AAAATATTGATTTAACATGT+TGG - Chr3:96643740-96643759 None:intergenic 15.0%
!!! ACTAATATGTAAATAGTTTT+AGG - Chr3:96643919-96643938 None:intergenic 15.0%
!!! TAATAATTTTTTATGCAGAT+GGG + Chr3:96645481-96645500 MsG0380017472.01.T01:intron 15.0%
!!! TAGTTTAATTATAGTTTTGT+TGG - Chr3:96642816-96642835 None:intergenic 15.0%
!!! TGTTACAAATTTACATATTT+TGG + Chr3:96644411-96644430 MsG0380017472.01.T01:intron 15.0%
!! AACTCTTTCCATATAATTAA+AGG + Chr3:96642898-96642917 MsG0380017472.01.T01:intron 20.0%
!! ACTAGATATTATCTCTAATT+GGG + Chr3:96643629-96643648 MsG0380017472.01.T01:intron 20.0%
!! ACTCTTTCCATATAATTAAA+GGG + Chr3:96642899-96642918 MsG0380017472.01.T01:intron 20.0%
!! AGATCCATAGAAAAAAAATA+AGG + Chr3:96644855-96644874 MsG0380017472.01.T01:intron 20.0%
!! AGATTTAAAGATTAATGAGT+TGG + Chr3:96642376-96642395 MsG0380017472.01.T01:intron 20.0%
!! ATGTTATTGATATTGTTGAA+TGG + Chr3:96642689-96642708 MsG0380017472.01.T01:intron 20.0%
!! ATTAGAATTCATATTGTTCT+CGG - Chr3:96643989-96644008 None:intergenic 20.0%
!! ATTTACTCTTGCTAATAATT+TGG - Chr3:96642760-96642779 None:intergenic 20.0%
!! TGGAAACAAATTGAAAAAAA+AGG + Chr3:96642548-96642567 MsG0380017472.01.T01:intron 20.0%
!! TGTTATTGATATTGTTGAAT+GGG + Chr3:96642690-96642709 MsG0380017472.01.T01:intron 20.0%
!!! AATAATTTTTTATGCAGATG+GGG + Chr3:96645482-96645501 MsG0380017472.01.T01:intron 20.0%
!!! ATGATTTGAAATAGTATGTT+AGG - Chr3:96645370-96645389 None:intergenic 20.0%
!!! ATTCGTTAATTTTCAAATGA+AGG - Chr3:96645423-96645442 None:intergenic 20.0%
!!! CTAAAAATTTTGTCTTCAAA+TGG + Chr3:96642099-96642118 MsG0380017472.01.T01:CDS 20.0%
!!! CTAATAATTTTTTATGCAGA+TGG + Chr3:96645480-96645499 MsG0380017472.01.T01:intron 20.0%
!!! TGAAAAATCTCTTTTATCAT+CGG - Chr3:96641794-96641813 MsG0380017473.01.T01:CDS 20.0%
!!! TTAGCCTTATTTTTTTTCTA+TGG - Chr3:96644862-96644881 None:intergenic 20.0%
!!! TTCTTTTTGGAAAAGAATAA+AGG + Chr3:96645224-96645243 MsG0380017472.01.T01:intron 20.0%
!!! TTGAAGACAAAATTTTTAGA+GGG - Chr3:96642098-96642117 None:intergenic 20.0%
!!! TTGAAGAGTGAAATTTTTAA+TGG + Chr3:96645674-96645693 MsG0380017472.01.T01:three_prime_UTR 20.0%
!!! TTTGAAGACAAAATTTTTAG+AGG - Chr3:96642099-96642118 None:intergenic 20.0%
! AAAGTAGGAATAATTTGAGA+GGG - Chr3:96644686-96644705 None:intergenic 25.0%
! AATATTGGATACAAGAATGA+AGG + Chr3:96643881-96643900 MsG0380017472.01.T01:intron 25.0%
! ACTCTTCAAAGAACATAATA+TGG - Chr3:96645663-96645682 None:intergenic 25.0%
! AGATAATATCTAGTGAGTAA+TGG - Chr3:96643623-96643642 None:intergenic 25.0%
! ATAATTTGGAGATGTGTTAA+TGG - Chr3:96642746-96642765 None:intergenic 25.0%
! ATATTGGATACAAGAATGAA+GGG + Chr3:96643882-96643901 MsG0380017472.01.T01:intron 25.0%
! CACTAGATATTATCTCTAAT+TGG + Chr3:96643628-96643647 MsG0380017472.01.T01:intron 25.0%
! CGAAAATAAAATAAAATGGC+AGG - Chr3:96642147-96642166 None:intergenic 25.0%
! GAAATACTTACCATTGAATT+AGG - Chr3:96644524-96644543 None:intergenic 25.0%
! GAGAACAATATGAATTCTAA+TGG + Chr3:96643988-96644007 MsG0380017472.01.T01:CDS 25.0%
! GATAATATCTAGTGAGTAAT+GGG - Chr3:96643622-96643641 None:intergenic 25.0%
! GATTCTACCCTTTAATTATA+TGG - Chr3:96642909-96642928 None:intergenic 25.0%
! GTTCTCAGTAAGAATTTATA+TGG - Chr3:96645195-96645214 None:intergenic 25.0%
! TAAAGTAGGAATAATTTGAG+AGG - Chr3:96644687-96644706 None:intergenic 25.0%
! TAATAATTGTGCTTGATTTC+AGG + Chr3:96644940-96644959 MsG0380017472.01.T01:intron 25.0%
! TAGAAGGTTTGATGTAATAT+TGG + Chr3:96643866-96643885 MsG0380017472.01.T01:intron 25.0%
! TCATCATCATTCTATCAAAA+GGG - Chr3:96645772-96645791 None:intergenic 25.0%
!! AACAAACAAATCACATGTTT+TGG - Chr3:96644359-96644378 None:intergenic 25.0%
!! AATGAACTTCTTTTCTCAAT+GGG - Chr3:96642665-96642684 None:intergenic 25.0%
!! ACAAACAAATCACATGTTTT+GGG - Chr3:96644358-96644377 None:intergenic 25.0%
!! ATCATTTTATATCGCTTATC+TGG - Chr3:96643668-96643687 None:intergenic 25.0%
!! TAATGAACTTCTTTTCTCAA+TGG - Chr3:96642666-96642685 None:intergenic 25.0%
!! TCTTATCCTTCAAGTTTATA+AGG - Chr3:96643410-96643429 None:intergenic 25.0%
!! TTTAAAGATTAATGAGTTGG+TGG + Chr3:96642379-96642398 MsG0380017472.01.T01:intron 25.0%
!! TTTTCCCATTAAATTCAGAT+AGG + Chr3:96643369-96643388 MsG0380017472.01.T01:intron 25.0%
!!! AAGTTTTCATTGATTGTTGT+AGG + Chr3:96642870-96642889 MsG0380017472.01.T01:intron 25.0%
!!! AGCAATTTTAATCCAGAAAA+AGG - Chr3:96643191-96643210 None:intergenic 25.0%
!!! CCTTTGAACAATATTTTGAT+GGG - Chr3:96645396-96645415 None:intergenic 25.0%
!!! GAAAATGATAAAGCATTGAA+TGG - Chr3:96643342-96643361 None:intergenic 25.0%
!!! TCCTTTGAACAATATTTTGA+TGG - Chr3:96645397-96645416 None:intergenic 25.0%
!!! TGGTGCATTTTCTTTTTTTA+AGG + Chr3:96644548-96644567 MsG0380017472.01.T01:intron 25.0%
!!! TTCTTTTTTTAAGGAAGTTG+TGG + Chr3:96644557-96644576 MsG0380017472.01.T01:intron 25.0%
AAAAAAGAAAATGCACCAAG+AGG - Chr3:96644546-96644565 None:intergenic 30.0%
AAAAGCAAAAATGCAGAAAG+AGG - Chr3:96641915-96641934 MsG0380017473.01.T01:CDS 30.0%
AACAATCAATGAAAACTTGC+AGG - Chr3:96642868-96642887 None:intergenic 30.0%
AACTATAGTTTAACCATGTG+GGG - Chr3:96643815-96643834 None:intergenic 30.0%
AAGAGGAATTTACCAGAAAA+AGG - Chr3:96641898-96641917 MsG0380017473.01.T01:CDS 30.0%
AAGAGGGTAAAGATAAGAAT+AGG - Chr3:96642069-96642088 None:intergenic 30.0%
AAGTTTATAAGGTTTGCACT+TGG - Chr3:96643399-96643418 None:intergenic 30.0%
AATTAGGTGATTTACGAATG+AGG - Chr3:96644508-96644527 None:intergenic 30.0%
AATTCACATTAGAATGCACA+AGG - Chr3:96644737-96644756 None:intergenic 30.0%
AGCAAGAGTAAATAATGCTT+TGG + Chr3:96642767-96642786 MsG0380017472.01.T01:intron 30.0%
ATACTTGTTCCAGAGATAAA+AGG + Chr3:96644830-96644849 MsG0380017472.01.T01:intron 30.0%
ATTCATGTAGTAACCTTTGT+GGG + Chr3:96645622-96645641 MsG0380017472.01.T01:three_prime_UTR 30.0%
CAAAAAAACTTACGAGAAAG+TGG - Chr3:96642963-96642982 None:intergenic 30.0%
CAACTATAGTTTAACCATGT+GGG - Chr3:96643816-96643835 None:intergenic 30.0%
CCCATCAAAATATTGTTCAA+AGG + Chr3:96645393-96645412 MsG0380017472.01.T01:intron 30.0%
CCTAAAGAATACAACTTCAA+AGG - Chr3:96644049-96644068 None:intergenic 30.0%
GCTTAAACATTGAACTTAGA+AGG + Chr3:96643850-96643869 MsG0380017472.01.T01:intron 30.0%
GTCATCATCATTCTATCAAA+AGG - Chr3:96645773-96645792 None:intergenic 30.0%
GTTACTCATGCTATTCTTAT+TGG + Chr3:96643493-96643512 MsG0380017472.01.T01:intron 30.0%
TAAAATAAAATGGCAGGCAA+AGG - Chr3:96642141-96642160 None:intergenic 30.0%
TAATTAGAACCACTATGACT+AGG - Chr3:96645815-96645834 None:intergenic 30.0%
TATTCATGTAGTAACCTTTG+TGG + Chr3:96645621-96645640 MsG0380017472.01.T01:three_prime_UTR 30.0%
TCAACTATAGTTTAACCATG+TGG - Chr3:96643817-96643836 None:intergenic 30.0%
TCGTAAATCACCTAATTCAA+TGG + Chr3:96644511-96644530 MsG0380017472.01.T01:CDS 30.0%
TCTTAAATACCTAGTCATAG+TGG + Chr3:96645803-96645822 MsG0380017472.01.T01:three_prime_UTR 30.0%
TGCAAACCTTATAAACTTGA+AGG + Chr3:96643401-96643420 MsG0380017472.01.T01:CDS 30.0%
TTCAGTAGAAAATGAAGACT+TGG - Chr3:96645332-96645351 None:intergenic 30.0%
TTTCAAGCAATATTATGCAG+AGG - Chr3:96644763-96644782 None:intergenic 30.0%
! AATTTGTTTCCAGTTTAAGC+GGG - Chr3:96642540-96642559 None:intergenic 30.0%
! ATCCAAAAAAGAAGCCATTT+TGG - Chr3:96642036-96642055 None:intergenic 30.0%
! ATTTTTCACCAAAATCTCCA+GGG - Chr3:96645583-96645602 None:intergenic 30.0%
! CAATTTGTTTCCAGTTTAAG+CGG - Chr3:96642541-96642560 None:intergenic 30.0%
! CTGAAGATAAGGTTGTTATT+GGG - Chr3:96641712-96641731 MsG0380017473.01.T01:intron 30.0%
! GTTTCTGTTATAGCTTTTCT+AGG - Chr3:96642235-96642254 None:intergenic 30.0%
! TGGTGTATGTGATTTTACTT+TGG + Chr3:96644577-96644596 MsG0380017472.01.T01:intron 30.0%
! TGTGTTAATGGCTAGTTATA+TGG - Chr3:96642734-96642753 None:intergenic 30.0%
! TTCTTCTTCTTCTTCTAGAA+GGG + Chr3:96641822-96641841 MsG0380017472.01.T01:five_prime_UTR 30.0%
!! CCTTTGAAGTTGTATTCTTT+AGG + Chr3:96644046-96644065 MsG0380017472.01.T01:CDS 30.0%
!! TAAGTTGACTTGACAATAGT+TGG + Chr3:96645165-96645184 MsG0380017472.01.T01:intron 30.0%
!! TCCAAAAAAGAAGCCATTTT+GGG - Chr3:96642035-96642054 None:intergenic 30.0%
!!! ATTTGGTTTGGTTTTGGTTT+TGG - Chr3:96641756-96641775 MsG0380017473.01.T01:intron 30.0%
!!! TTTGGTTTTGGTTTTGGTTA+AGG - Chr3:96641744-96641763 MsG0380017473.01.T01:intron 30.0%
!!! TTTGGTTTTGGTTTTGGTTT+TGG - Chr3:96641750-96641769 MsG0380017473.01.T01:intron 30.0%
!!! TTTTTTTGTCTTCCTTTGCA+AGG + Chr3:96642975-96642994 MsG0380017472.01.T01:intron 30.0%
AAAGCCAGAACGATATTCAT+CGG + Chr3:96642932-96642951 MsG0380017472.01.T01:intron 35.0%
AAGAATAAGAGCTGGATTGT+TGG - Chr3:96641689-96641708 MsG0380017473.01.T01:intron 35.0%
ACAAGTATGACTCTGATTGA+AGG - Chr3:96644818-96644837 None:intergenic 35.0%
ACTTGAAGGATAAGAGCAAA+TGG + Chr3:96643415-96643434 MsG0380017472.01.T01:CDS 35.0%
AGGGCCTATCTGAATTTAAT+GGG - Chr3:96643376-96643395 None:intergenic 35.0%
AGTAAGGAGAGTAGATTAGA+TGG + Chr3:96642313-96642332 MsG0380017472.01.T01:intron 35.0%
ATAACAACCTTATCTTCAGG+AGG + Chr3:96641713-96641732 MsG0380017472.01.T01:five_prime_UTR 35.0%
ATGGCAAGAGAAAACAAAAC+AGG - Chr3:96642489-96642508 None:intergenic 35.0%
CAAGTATGACTCTGATTGAA+GGG - Chr3:96644817-96644836 None:intergenic 35.0%
CAATGGTAAGTATTTCCTCT+TGG + Chr3:96644528-96644547 MsG0380017472.01.T01:intron 35.0%
CACGTTTGCAATACTAAAGT+AGG - Chr3:96644701-96644720 None:intergenic 35.0%
CCAATAACAACCTTATCTTC+AGG + Chr3:96641710-96641729 MsG0380017472.01.T01:five_prime_UTR 35.0%
CCTGAAGATAAGGTTGTTAT+TGG - Chr3:96641713-96641732 MsG0380017473.01.T01:intron 35.0%
CTGAAGAATCAGGAATTTAC+CGG + Chr3:96644624-96644643 MsG0380017472.01.T01:CDS 35.0%
CTTCTTCTTCTTCTTCTAGA+AGG + Chr3:96641821-96641840 MsG0380017472.01.T01:five_prime_UTR 35.0%
CTTGAAGAAACAGTAGCTAT+CGG - Chr3:96643566-96643585 None:intergenic 35.0%
TAACAACCTTATCTTCAGGA+GGG + Chr3:96641714-96641733 MsG0380017472.01.T01:five_prime_UTR 35.0%
TATTGCTTGAAAGCTCTTGT+TGG + Chr3:96644771-96644790 MsG0380017472.01.T01:intron 35.0%
TCTTCTCTCTACATGAAAGT+GGG - Chr3:96642274-96642293 None:intergenic 35.0%
TGAAGTTGTATTCTTTAGGC+AGG + Chr3:96644050-96644069 MsG0380017472.01.T01:CDS 35.0%
TTATAAGGTTTGCACTTGGA+GGG - Chr3:96643395-96643414 None:intergenic 35.0%
TTATTGGGAAGAATAAGAGC+TGG - Chr3:96641697-96641716 MsG0380017473.01.T01:intron 35.0%
TTCATGTAGTAACCTTTGTG+GGG + Chr3:96645623-96645642 MsG0380017472.01.T01:three_prime_UTR 35.0%
TTCTTACTGAGAACATGTGA+CGG + Chr3:96645201-96645220 MsG0380017472.01.T01:intron 35.0%
TTGAAGAAACAGTAGCTATC+GGG - Chr3:96643565-96643584 None:intergenic 35.0%
TTGACACCCAAAAGCTAAAA+AGG - Chr3:96643946-96643965 None:intergenic 35.0%
TTGTATTCTTTAGGCAGGAT+TGG + Chr3:96644055-96644074 MsG0380017472.01.T01:CDS 35.0%
TTGTTAGAGATAGTGAAGTG+AGG - Chr3:96641867-96641886 MsG0380017473.01.T01:CDS 35.0%
TTTAGCTGACAAATCTTCAC+TGG + Chr3:96643464-96643483 MsG0380017472.01.T01:CDS 35.0%
TTTATAAGGTTTGCACTTGG+AGG - Chr3:96643396-96643415 None:intergenic 35.0%
TTTATCATCGGATTGTTGGA+AGG - Chr3:96641782-96641801 MsG0380017473.01.T01:CDS 35.0%
TTTCATGTAGAGAGAAGAGT+AGG + Chr3:96642276-96642295 MsG0380017472.01.T01:intron 35.0%
TTTCCAAATCCCTACTGAAA+CGG + Chr3:96645727-96645746 MsG0380017472.01.T01:three_prime_UTR 35.0%
TTTGAGCACTTGTATATGCA+AGG + Chr3:96644015-96644034 MsG0380017472.01.T01:CDS 35.0%
! AAGTCTTATCCCATTAAGTG+TGG - Chr3:96642448-96642467 None:intergenic 35.0%
! ATGCAACAAGTTTGAGATTG+AGG - Chr3:96643305-96643324 None:intergenic 35.0%
! CTCTTTTATCATCGGATTGT+TGG - Chr3:96641786-96641805 MsG0380017473.01.T01:CDS 35.0%
! GAGGTATTCATATACCAGTA+AGG - Chr3:96644489-96644508 None:intergenic 35.0%
! GATTTTTCACCAAAATCTCC+AGG - Chr3:96645584-96645603 None:intergenic 35.0%
! GCTTTGTAGTTTCCTTTTTC+TGG + Chr3:96643176-96643195 MsG0380017472.01.T01:intron 35.0%
! GGAGGAACATAATTTTCTGT+AGG - Chr3:96645550-96645569 None:intergenic 35.0%
! TATCTCTAATTGGGAAGCAT+AGG + Chr3:96643638-96643657 MsG0380017472.01.T01:intron 35.0%
! TGGATCTTTCCTTTTATCTC+TGG - Chr3:96644842-96644861 None:intergenic 35.0%
!! CAATGGTTTTACACTCTCTA+TGG + Chr3:96641653-96641672 MsG0380017472.01.T01:five_prime_UTR 35.0%
!! CCAAAAAAGAAGCCATTTTG+GGG - Chr3:96642034-96642053 None:intergenic 35.0%
!!! AGTCAAGCCTTTTTAGCTTT+TGG + Chr3:96643936-96643955 MsG0380017472.01.T01:intron 35.0%
!!! CTCACAGTCTTTTCAAGTAA+AGG - Chr3:96645508-96645527 None:intergenic 35.0%
!!! GTCAAGCCTTTTTAGCTTTT+GGG + Chr3:96643937-96643956 MsG0380017472.01.T01:intron 35.0%
AAAACTTGCAGGCAACAAGA+GGG - Chr3:96642857-96642876 None:intergenic 40.0%
AAACTAACTGGAGCTAGCAA+TGG + Chr3:96641636-96641655 MsG0380017472.01.T01:five_prime_UTR 40.0%
AAAGAGACAACCGTTTCAGT+AGG - Chr3:96645740-96645759 None:intergenic 40.0%
AAGAGACAACCGTTTCAGTA+GGG - Chr3:96645739-96645758 None:intergenic 40.0%
AAGGAGAGTAGATTAGATGG+AGG + Chr3:96642316-96642335 MsG0380017472.01.T01:intron 40.0%
AATCTCCAGGGATCTTTGTA+TGG - Chr3:96645571-96645590 None:intergenic 40.0%
AATGCTTTGGCCATAGATGT+GGG + Chr3:96642780-96642799 MsG0380017472.01.T01:intron 40.0%
ACAGACCAGAGAGTTAAGAA+TGG + Chr3:96643787-96643806 MsG0380017472.01.T01:intron 40.0%
ACATGAATTTCACCCCACAA+AGG - Chr3:96645638-96645657 None:intergenic 40.0%
ACCTTTGTGACGTAAACAGT+TGG - Chr3:96644084-96644103 None:intergenic 40.0%
ACTGAAACGGTTGTCTCTTT+AGG + Chr3:96645740-96645759 MsG0380017472.01.T01:three_prime_UTR 40.0%
ACTTCAACAAGACCCCAAAA+TGG + Chr3:96642019-96642038 MsG0380017472.01.T01:CDS 40.0%
AGATTGAGGAAATACCGTGA+CGG - Chr3:96643291-96643310 None:intergenic 40.0%
ATAAGAGCTGGATTGTTGGA+AGG - Chr3:96641685-96641704 MsG0380017473.01.T01:intron 40.0%
ATTGTCTCCTCACAGATTGA+AGG + Chr3:96644459-96644478 MsG0380017472.01.T01:intron 40.0%
CAATCTCATCATTTCCGTCA+CGG + Chr3:96643274-96643293 MsG0380017472.01.T01:CDS 40.0%
CTACATGAAAGTGGGAAAAG+AGG - Chr3:96642266-96642285 None:intergenic 40.0%
CTCTTCTCTCTACATGAAAG+TGG - Chr3:96642275-96642294 None:intergenic 40.0%
CTGAAACGGTTGTCTCTTTA+GGG + Chr3:96645741-96645760 MsG0380017472.01.T01:three_prime_UTR 40.0%
CTGTTGAAGCAACATAATGC+CGG - Chr3:96644646-96644665 None:intergenic 40.0%
CTTATCCCATTAAGTGTGGT+CGG - Chr3:96642444-96642463 None:intergenic 40.0%
GAGGGCCTATCTGAATTTAA+TGG - Chr3:96643377-96643396 None:intergenic 40.0%
GATAAACTCTTGCCTTGCAA+AGG - Chr3:96642990-96643009 None:intergenic 40.0%
GCAAAGTCAGTCTCAATTGT+AGG - Chr3:96641957-96641976 None:intergenic 40.0%
GGATTTACACTACAGATCAC+AGG - Chr3:96644114-96644133 None:intergenic 40.0%
GGCTTGTAGATTCTGTAGTA+AGG + Chr3:96642297-96642316 MsG0380017472.01.T01:intron 40.0%
GTTGTACAGTCTGAAGAATC+AGG + Chr3:96644614-96644633 MsG0380017472.01.T01:intron 40.0%
TAATGCTTTGGCCATAGATG+TGG + Chr3:96642779-96642798 MsG0380017472.01.T01:intron 40.0%
TACTTTGGACTTGTGACTGA+TGG + Chr3:96644592-96644611 MsG0380017472.01.T01:intron 40.0%
TATTCTGTCTTGTCTTGCAG+TGG + Chr3:96641977-96641996 MsG0380017472.01.T01:intron 40.0%
TCCAACTGTTTACGTCACAA+AGG + Chr3:96644080-96644099 MsG0380017472.01.T01:CDS 40.0%
! ACAAAGATCCCTGGAGATTT+TGG + Chr3:96645572-96645591 MsG0380017472.01.T01:CDS 40.0%
! ACAACATGCGTTCCTTTTTC+TGG + Chr3:96641883-96641902 MsG0380017472.01.T01:five_prime_UTR 40.0%
! ATGGACTGCAAAAGATGTTG+TGG + Chr3:96643434-96643453 MsG0380017472.01.T01:CDS 40.0%
! GAACATGTGACGGTTCTTTT+TGG + Chr3:96645211-96645230 MsG0380017472.01.T01:intron 40.0%
! GTTTTCTCTTGCCATCCAAA+AGG + Chr3:96642494-96642513 MsG0380017472.01.T01:intron 40.0%
!! AGAAGGGATTTTGTGCTGTT+AGG + Chr3:96641838-96641857 MsG0380017472.01.T01:five_prime_UTR 40.0%
!! TTTTAGAGGGAAGCTCAAGA+GGG - Chr3:96642085-96642104 None:intergenic 40.0%
!! TTTTTAGAGGGAAGCTCAAG+AGG - Chr3:96642086-96642105 None:intergenic 40.0%
!!! AGGAGCATTTGGTTTGGTTT+TGG - Chr3:96641762-96641781 MsG0380017473.01.T01:intron 40.0%
!!! CCCCAAAATGGCTTCTTTTT+TGG + Chr3:96642031-96642050 MsG0380017472.01.T01:CDS 40.0%
!!! TTTTTTCCACTGTGGACTGA+GGG - Chr3:96644992-96645011 None:intergenic 40.0%
AAACTTGCAGGCAACAAGAG+GGG - Chr3:96642856-96642875 None:intergenic 45.0%
AATTCCTTGCAGCTAATGCG+CGG + Chr3:96643216-96643235 MsG0380017472.01.T01:intron 45.0%
AGATTGAAGGCGAACCTTAC+TGG + Chr3:96644472-96644491 MsG0380017472.01.T01:intron 45.0%
ATGTAGCCGACCACACTTAA+TGG + Chr3:96642435-96642454 MsG0380017472.01.T01:intron 45.0%
CAACCGTTTCAGTAGGGATT+TGG - Chr3:96645733-96645752 None:intergenic 45.0%
CACTAGTGATCCCACATCTA+TGG - Chr3:96642793-96642812 None:intergenic 45.0%
CTCTCTCTCTCTCTCTCATA+TGG + Chr3:96645027-96645046 MsG0380017472.01.T01:intron 45.0%
GAAAACTTGCAGGCAACAAG+AGG - Chr3:96642858-96642877 None:intergenic 45.0%
GCTTCAACAGCAGAAAGAGA+TGG + Chr3:96644656-96644675 MsG0380017472.01.T01:CDS 45.0%
GGATTACCCTCCTGAAGATA+AGG - Chr3:96641723-96641742 MsG0380017473.01.T01:intron 45.0%
TGACTCTGATTGAAGGGAAG+AGG - Chr3:96644811-96644830 None:intergenic 45.0%
TGCATCGAGAACTGAACTCT+CGG - Chr3:96644198-96644217 None:intergenic 45.0%
TGGAATTGGAAATCGCGAAG+TGG + Chr3:96641611-96641630 MsG0380017472.01.T01:five_prime_UTR 45.0%
TGTAGCCGACCACACTTAAT+GGG + Chr3:96642436-96642455 MsG0380017472.01.T01:intron 45.0%
TTCCTCCATACAAAGATCCC+TGG + Chr3:96645563-96645582 MsG0380017472.01.T01:CDS 45.0%
! AGTAGCTATCGGGTATTGCT+CGG - Chr3:96643555-96643574 None:intergenic 45.0%
!! AGGGATTTTGTGCTGTTAGG+AGG + Chr3:96641841-96641860 MsG0380017472.01.T01:five_prime_UTR 45.0%
!! GGATTGTTGGAAGGAGCATT+TGG - Chr3:96641773-96641792 MsG0380017473.01.T01:CDS 45.0%
!! GTTGGAAGGAGCATTTGGTT+TGG - Chr3:96641768-96641787 MsG0380017473.01.T01:intron 45.0%
!!! CTTTTTTCCACTGTGGACTG+AGG - Chr3:96644993-96645012 None:intergenic 45.0%
!!! GAGGGTACTTTTTTCCACTG+TGG - Chr3:96645000-96645019 None:intergenic 45.0%
!! AAAATAATAAATATTTGTAT+TGG + Chr3:96644880-96644899 MsG0380017472.01.T01:intron 5.0%
ACATGCTCACGTGTCTGTGT+TGG - Chr3:96644266-96644285 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - Chr3:96645017-96645036 None:intergenic 50.0%
AGCTAGACGCAGTTGATCAG+TGG - Chr3:96645142-96645161 None:intergenic 50.0%
AGGTTCGCCTTCAATCTGTG+AGG - Chr3:96644469-96644488 None:intergenic 50.0%
CGCGAAGTGGTGAAACTAAC+TGG + Chr3:96641624-96641643 MsG0380017472.01.T01:five_prime_UTR 50.0%
CTCCAGGGATCTTTGTATGG+AGG - Chr3:96645568-96645587 None:intergenic 50.0%
GAGAGAGAGAGAGAGAGAGA+GGG - Chr3:96645018-96645037 None:intergenic 50.0%
GCAGCCGATGAATATCGTTC+TGG - Chr3:96642939-96642958 None:intergenic 50.0%
GGGCACCATTCTTAACTCTC+TGG - Chr3:96643795-96643814 None:intergenic 50.0%
GTTAAGAATGGTGCCCCACA+TGG + Chr3:96643799-96643818 MsG0380017472.01.T01:intron 50.0%
TAGACGCAGTTGATCAGTGG+CGG - Chr3:96645139-96645158 None:intergenic 50.0%
! GTAGCTATCGGGTATTGCTC+GGG - Chr3:96643554-96643573 None:intergenic 50.0%
! TAGCTATCGGGTATTGCTCG+GGG - Chr3:96643553-96643572 None:intergenic 50.0%
!! AGCTTGTTGCCCGCTTAAAC+TGG + Chr3:96642528-96642547 MsG0380017472.01.T01:intron 50.0%
TGTCTTGCAGTGGCTCTTGC+TGG + Chr3:96641987-96642006 MsG0380017472.01.T01:intron 55.0%
TTGCCATCCAAAAGGCCCAG+CGG + Chr3:96642502-96642521 MsG0380017472.01.T01:intron 55.0%
! ATCAGTGGCGGAGGAAATGC+TGG - Chr3:96645127-96645146 None:intergenic 55.0%
ACGCAGTTGATCAGTGGCGG+AGG - Chr3:96645136-96645155 None:intergenic 60.0%
CTTCGACCCTCAGTCCACAG+TGG + Chr3:96644983-96645002 MsG0380017472.01.T01:intron 60.0%
!! ACTGAGGGTCGAAGCGCTGA+TGG - Chr3:96644977-96644996 None:intergenic 60.0%
GCAGCCGCGCATTAGCTGCA+AGG - Chr3:96643223-96643242 None:intergenic 65.0%
!! CTCGGCTGAGCGCTGAACTG+AGG - Chr3:96644180-96644199 None:intergenic 65.0%
GGGCAACAAGCTGCGCCGCT+GGG - Chr3:96642520-96642539 None:intergenic 70.0%
! AGCTGCGCCGCTGGGCCTTT+TGG - Chr3:96642512-96642531 None:intergenic 70.0%
! GCGCCGCTGGGCCTTTTGGA+TGG - Chr3:96642508-96642527 None:intergenic 70.0%
CGGGCAACAAGCTGCGCCGC+TGG - Chr3:96642521-96642540 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
Chr3 gene 96641598 96645871 96641598 ID=MsG0380017474.01;
Chr3 mRNA 96641598 96645871 96641598 ID=MsG0380017474.01.T01;Parent=MsG0380017474.01
Chr3 exon 96641598 96641904 96641598 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96641655 96641904 96641655 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 CDS 96641997 96642120 96641997 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96641997 96642120 96641997 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96642920 96642969 96642920 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96642920 96642969 96642920 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96643228 96643295 96643228 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96643228 96643295 96643228 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96643387 96643485 96643387 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96643387 96643485 96643387 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96644170 96644283 96644170 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96644170 96644283 96644170 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96644481 96644493 96644481 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96644481 96644493 96644481 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96644630 96644677 96644630 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96644630 96644677 96644630 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96644962 96645011 96644962 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96644962 96645011 96644962 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Chr3 CDS 96645499 96645597 96645499 ID=MsG0380017474.01.T01.cds;Parent=MsG0380017474.01.T01
Chr3 exon 96645499 96645871 96645499 ID=MsG0380017474.01.T01.exon;Parent=MsG0380017474.01.T01
Gene Sequence

>MsG0380017474.01.T01

ATGGTTTTACACTCTCTATGGCTATGTCCTTCCAACAATCCAGCTCTTATTCTTCCCAATAACAACCTTATCTTCAGGAGGGTAATCCTTAACCAAAACCAAAACCAAAACCAAACCAAATGCTCCTTCCAACAATCCGATGATAAAAGAGATTTTTCATCATCATCTTCTTCTTCTTCTTCTAGAAGGGATTTTGTGCTGTTAGGAGGCCTCACTTCACTATCTCTAACAACATGCGTTCCTTTTTCTGTGGCTCTTGCTGGAGATGAAGAACTTCAACAAGACCCCAAAATGGCTTCTTTTTTGGATGAAGTCAATGCCTATTCTTATCTTTACCCTCTTGAGCTTCCCTCTAAAAATTTTGTCTTCAAATGGGTAGAATCTCGAAAGCCAGAACGATATTCATCGGCTGCACCACTTTCTCCTAATGCGCGGCTGCGTATTGTGTCTGAACGTGTTGATCTCTTTGACAATCTCATCATTTCCGTCACGATAGGCCCTCCAAGTGCAAACCTTATAAACTTGAAGGATAAGAGCAAATGGACTGCAAAAGATGTTGTGGATTCAGTTTTAGCTGACAAATCTTCACTGCGAGTTACCTCAGTTCAGCGCTCAGCCGAGAGTTCAGTTCTCGATGCACATTCTGATGAAGTAAGCTTCACACATTATCATTACTTATTGTTTCCAACACAGACACGTGAGCATGCGAACCTTACTGAATCAGGAATTTACCGGCATTATGTTGCTTCAACAGCAGAAAGAGATGGTTATTTGTACTCCATCAGCGCTTCGACCCTCAGTCCACAGTGGAAAAAAATGGGGCCTTTACTTGAAAAGACTGTGAGTTCGTTTCGACTTGTCAGTCCTACAGAAAATTATGTTCCTCCATACAAAGATCCCTGGAGATTTTGGTGA

Protein sequence

>MsG0380017474.01.T01

MVLHSLWLCPSNNPALILPNNNLIFRRVILNQNQNQNQTKCSFQQSDDKRDFSSSSSSSSSRRDFVLLGGLTSLSLTTCVPFSVALAGDEELQQDPKMASFLDEVNAYSYLYPLELPSKNFVFKWVESRKPERYSSAAPLSPNARLRIVSERVDLFDNLIISVTIGPPSANLINLKDKSKWTAKDVVDSVLADKSSLRVTSVQRSAESSVLDAHSDEVSFTHYHYLLFPTQTREHANLTESGIYRHYVASTAERDGYLYSISASTLSPQWKKMGPLLEKTVSSFRLVSPTENYVPPYKDPWRFW*