AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0380015719.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015719.01.T03 MTR_3g075230 88.545 323 5 1 8 298 1 323 0.0 506
MsG0380015719.01.T03 MTR_8g090025 34.413 247 110 6 89 286 65 308 2.75e-40 143
MsG0380015719.01.T03 MTR_8g090025 34.764 233 102 5 89 272 65 296 8.02e-40 142
MsG0380015719.01.T03 MTR_0937s0020 34.746 236 113 5 78 278 520 749 6.63e-30 119
MsG0380015719.01.T03 MTR_2g029350 36.885 122 72 3 89 207 74 193 2.69e-19 87.4
MsG0380015719.01.T02 MTR_3g075230 88.545 323 5 1 8 298 1 323 0.0 506
MsG0380015719.01.T02 MTR_8g090025 34.413 247 110 6 89 286 65 308 2.75e-40 143
MsG0380015719.01.T02 MTR_8g090025 34.764 233 102 5 89 272 65 296 8.02e-40 142
MsG0380015719.01.T02 MTR_0937s0020 34.746 236 113 5 78 278 520 749 6.63e-30 119
MsG0380015719.01.T02 MTR_2g029350 36.885 122 72 3 89 207 74 193 2.69e-19 87.4
MsG0380015719.01.T01 MTR_3g075230 88.545 323 5 1 8 298 1 323 0.0 506
MsG0380015719.01.T01 MTR_8g090025 34.413 247 110 6 89 286 65 308 2.75e-40 143
MsG0380015719.01.T01 MTR_8g090025 34.764 233 102 5 89 272 65 296 8.02e-40 142
MsG0380015719.01.T01 MTR_0937s0020 34.746 236 113 5 78 278 520 749 6.63e-30 119
MsG0380015719.01.T01 MTR_2g029350 36.885 122 72 3 89 207 74 193 2.69e-19 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0380015719.01.T03 AT3G48420 71.119 277 44 3 57 298 44 319 7.72e-131 375
MsG0380015719.01.T03 AT4G39970 32.941 255 122 6 65 272 42 294 1.17e-37 136
MsG0380015719.01.T03 AT5G45170 29.680 219 134 8 17 220 1 214 2.23e-16 79.0
MsG0380015719.01.T03 AT5G45170 29.680 219 134 8 17 220 1 214 2.78e-16 78.6
MsG0380015719.01.T02 AT3G48420 71.119 277 44 3 57 298 44 319 7.72e-131 375
MsG0380015719.01.T02 AT4G39970 32.941 255 122 6 65 272 42 294 1.17e-37 136
MsG0380015719.01.T02 AT5G45170 29.680 219 134 8 17 220 1 214 2.23e-16 79.0
MsG0380015719.01.T02 AT5G45170 29.680 219 134 8 17 220 1 214 2.78e-16 78.6
MsG0380015719.01.T01 AT3G48420 71.119 277 44 3 57 298 44 319 7.72e-131 375
MsG0380015719.01.T01 AT4G39970 32.941 255 122 6 65 272 42 294 1.17e-37 136
MsG0380015719.01.T01 AT5G45170 29.680 219 134 8 17 220 1 214 2.23e-16 79.0
MsG0380015719.01.T01 AT5G45170 29.680 219 134 8 17 220 1 214 2.78e-16 78.6

Find 14 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTCATGTGACGATACATTT+TGG 0.221029 3:+74174189 None:intergenic
TAAAAGATCAATGTTTATAT+CGG 0.325530 3:-74175010 MsG0380015719.01.T01:three_prime_UTR
TCCTGAGGAGAGATTTGATT+TGG 0.337964 3:-74175172 MsG0380015719.01.T01:CDS
TCAATTCCTCATTTGTTGTC+AGG 0.365784 3:-74175055 MsG0380015719.01.T01:intron
GATGCTGTATTTGACTTCAT+TGG 0.403312 3:-74175201 MsG0380015719.01.T01:CDS
CAATATGTCAGCTAGCAAAC+TGG 0.412540 3:-74175123 MsG0380015719.01.T01:exon
TTTATATCGGTTGTGTAAAG+AGG 0.474407 3:-74174997 MsG0380015719.01.T01:three_prime_UTR
GCCAAATCAAATCTCTCCTC+AGG 0.492266 3:+74175171 None:intergenic
TGACATATTGCTTCTCAAGA+AGG 0.536995 3:+74175136 None:intergenic
AAAGACTTGATGTTAAAACT+TGG 0.553281 3:+74174867 None:intergenic
CTTCATTGGTGATCCTCCTG+AGG 0.623430 3:-74175187 MsG0380015719.01.T01:CDS
AGCACTGATAGAAATAGTGA+AGG 0.623583 3:+74175077 None:intergenic
AAATCAAATCTCTCCTCAGG+AGG 0.626804 3:+74175174 None:intergenic
GGTAAGCCTGACAACAAATG+AGG 0.628590 3:+74175049 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATGTAAATAAATTCATTTAT+TGG - Chr3:74175398-74175417 MsG0380015719.01.T01:intron 10.0%
!! TGTAAATAAATTCATTTATT+GGG - Chr3:74175399-74175418 MsG0380015719.01.T01:intron 10.0%
!!! TCTTATTTATAAAAAAAAGA+AGG + Chr3:74177869-74177888 None:intergenic 10.0%
!!! TGTAAAATGTTTTTTTTTTT+TGG + Chr3:74174836-74174855 None:intergenic 10.0%
!! AACATTATAAATAATGAGTA+TGG + Chr3:74175367-74175386 None:intergenic 15.0%
!! ATTCAATCATATAGTAAAAA+AGG + Chr3:74176199-74176218 None:intergenic 15.0%
!! TAAAAGATCAATGTTTATAT+CGG - Chr3:74177078-74177097 MsG0380015719.01.T01:intron 15.0%
!!! AAATAATATTAGCCTATTAA+GGG + Chr3:74175591-74175610 None:intergenic 15.0%
!!! GTATATTTCTATTTACTAAA+TGG - Chr3:74176693-74176712 MsG0380015719.01.T01:intron 15.0%
!!! TAAATAATATTAGCCTATTA+AGG + Chr3:74175592-74175611 None:intergenic 15.0%
!!! TCTATGTAATTTTTTTTCAT+AGG - Chr3:74176724-74176743 MsG0380015719.01.T01:intron 15.0%
!!! TTTTAATCATTGACTTAAAA+GGG + Chr3:74177063-74177082 None:intergenic 15.0%
!!! TTTTGAATGTTAACTTAAAT+TGG + Chr3:74175507-74175526 None:intergenic 15.0%
!!! TTTTTATTTATAAGAGATTG+AGG + Chr3:74177193-74177212 None:intergenic 15.0%
!! AAGATACACATAATAAGATA+AGG + Chr3:74175718-74175737 None:intergenic 20.0%
!! TAGTTGGAAAAATTCATTTA+AGG + Chr3:74175849-74175868 None:intergenic 20.0%
!! TTTATTCATAACTGCAATAT+CGG - Chr3:74175924-74175943 MsG0380015719.01.T01:intron 20.0%
!!! AAAAATGTTAAACCTTTTGA+AGG + Chr3:74177543-74177562 None:intergenic 20.0%
!!! AATAACTTGCTCTAAAATTT+TGG + Chr3:74176518-74176537 None:intergenic 20.0%
!!! ACACTATTTTCAATGAATAT+CGG - Chr3:74177713-74177732 MsG0380015719.01.T01:CDS 20.0%
!!! AGGAATTGATTCTATAAAAT+GGG + Chr3:74175885-74175904 None:intergenic 20.0%
!!! CTTTTAATCATTGACTTAAA+AGG + Chr3:74177064-74177083 None:intergenic 20.0%
!!! TACAACATTTGATTTTATGA+TGG + Chr3:74176450-74176469 None:intergenic 20.0%
!!! TAGGAATTGATTCTATAAAA+TGG + Chr3:74175886-74175905 None:intergenic 20.0%
!!! TGACATTTTTAATCATCAAA+GGG + Chr3:74177167-74177186 None:intergenic 20.0%
!!! TGCTAATTTTTTAGATTTTC+AGG - Chr3:74176117-74176136 MsG0380015719.01.T01:intron 20.0%
!!! TTATTTGTTTTTGAACTGTA+TGG - Chr3:74176550-74176569 MsG0380015719.01.T01:intron 20.0%
! AAAGACTTGATGTTAAAACT+TGG + Chr3:74177224-74177243 None:intergenic 25.0%
! AAATATGACGATATTTAGCT+GGG - Chr3:74177509-74177528 MsG0380015719.01.T01:intron 25.0%
! ACAATTGATGTGTTTATTGT+AGG - Chr3:74175153-74175172 MsG0380015719.01.T01:CDS 25.0%
! ATATGATTGAATGTTCAGTA+TGG - Chr3:74176207-74176226 MsG0380015719.01.T01:intron 25.0%
! ATCCTATAACATCTTTATAC+TGG - Chr3:74174880-74174899 MsG0380015719.01.T01:intron 25.0%
! ATTTATTTCCGAAATGAATC+AGG + Chr3:74177394-74177413 None:intergenic 25.0%
! ATTTATTTGTATTCCATCTC+AGG - Chr3:74175953-74175972 MsG0380015719.01.T01:intron 25.0%
! CTTTAAATTACACAAGACAT+TGG - Chr3:74176385-74176404 MsG0380015719.01.T01:intron 25.0%
! GACAATAATAAAGCAATTGA+GGG - Chr3:74177634-74177653 MsG0380015719.01.T01:CDS 25.0%
! GATTTACACAACAAAAAAGT+TGG + Chr3:74177450-74177469 None:intergenic 25.0%
! GGATACAATGAAATATTTGA+CGG + Chr3:74177848-74177867 None:intergenic 25.0%
! TAAATATGACGATATTTAGC+TGG - Chr3:74177508-74177527 MsG0380015719.01.T01:intron 25.0%
! TAACATCAAGTCTTTAGATT+GGG - Chr3:74177229-74177248 MsG0380015719.01.T01:intron 25.0%
! TATACACTACAGTTAAACAA+TGG - Chr3:74176171-74176190 MsG0380015719.01.T01:intron 25.0%
! TATCTTTCTTTCAAACATAC+AGG - Chr3:74175732-74175751 MsG0380015719.01.T01:intron 25.0%
! TTAACATCAAGTCTTTAGAT+TGG - Chr3:74177228-74177247 MsG0380015719.01.T01:intron 25.0%
!! AAATGAATTTTTCCAACTAC+AGG - Chr3:74175850-74175869 MsG0380015719.01.T01:intron 25.0%
!! AACAAAGATTAAAAAGCATG+AGG + Chr3:74174587-74174606 None:intergenic 25.0%
!! AATGAATTTTTCCAACTACA+GGG - Chr3:74175851-74175870 MsG0380015719.01.T01:intron 25.0%
!! CACTATTTTCAATGAATATC+GGG - Chr3:74177714-74177733 MsG0380015719.01.T01:CDS 25.0%
!! CTGACATTTTTAATCATCAA+AGG + Chr3:74177168-74177187 None:intergenic 25.0%
!!! AACTAGTTTGTTGTTTTCAT+CGG + Chr3:74174777-74174796 None:intergenic 25.0%
!!! ACTTTTTTGTTGTGTAAATC+AGG - Chr3:74177450-74177469 MsG0380015719.01.T01:intron 25.0%
!!! CTTATAAGTGTTGTTGTTTT+TGG + Chr3:74174326-74174345 None:intergenic 25.0%
!!! GATTTTATGATGGATACATT+TGG + Chr3:74176440-74176459 None:intergenic 25.0%
!!! TAGTGGTTATGTTAGTTTTT+GGG - Chr3:74176764-74176783 MsG0380015719.01.T01:intron 25.0%
!!! TTAGTGGTTATGTTAGTTTT+TGG - Chr3:74176763-74176782 MsG0380015719.01.T01:intron 25.0%
AAACGATTATTAGTGTTTGG+TGG - Chr3:74174928-74174947 MsG0380015719.01.T01:intron 30.0%
AACACTAATAATCGTTTCCA+AGG + Chr3:74174925-74174944 None:intergenic 30.0%
AAGTGTATAGTAACAAAGAG+CGG - Chr3:74176670-74176689 MsG0380015719.01.T01:intron 30.0%
AATATGACGATATTTAGCTG+GGG - Chr3:74177510-74177529 MsG0380015719.01.T01:intron 30.0%
AGCCAGTATAAAGATGTTAT+AGG + Chr3:74174885-74174904 None:intergenic 30.0%
AGGTATCATTGAAAGAAATG+CGG + Chr3:74174553-74174572 None:intergenic 30.0%
AGTACACACAAGTAACTAAT+AGG + Chr3:74175905-74175924 None:intergenic 30.0%
ATGCTTATGTAGGTGTAAAA+TGG + Chr3:74177313-74177332 None:intergenic 30.0%
ATGTGGAAATATCCCTTAAT+AGG - Chr3:74175576-74175595 MsG0380015719.01.T01:intron 30.0%
ATTAATTCTAGACCTACACA+TGG + Chr3:74177479-74177498 None:intergenic 30.0%
CAAGAATGAAATCACATTGA+AGG + Chr3:74176816-74176835 None:intergenic 30.0%
CAAGACATTGGAAAAGTTAA+TGG - Chr3:74176397-74176416 MsG0380015719.01.T01:intron 30.0%
CATAAGAACCTGATTCATTT+CGG - Chr3:74177383-74177402 MsG0380015719.01.T01:intron 30.0%
CGACAATAATAAAGCAATTG+AGG - Chr3:74177633-74177652 MsG0380015719.01.T01:CDS 30.0%
CTTGTAGATACTGAAAAAGA+TGG - Chr3:74174524-74174543 MsG0380015719.01.T01:intron 30.0%
GCAATAGTATCATGTTTACT+GGG - Chr3:74176006-74176025 MsG0380015719.01.T01:intron 30.0%
TAACCTATAACGTGTAGAAA+TGG + Chr3:74177360-74177379 None:intergenic 30.0%
TAGTACTCCATATACTAGTT+AGG + Chr3:74176340-74176359 None:intergenic 30.0%
TGCAATAGTATCATGTTTAC+TGG - Chr3:74176005-74176024 MsG0380015719.01.T01:intron 30.0%
TGCAATGATGAAAATCTTAC+TGG + Chr3:74176096-74176115 None:intergenic 30.0%
TGGAAACGATTATTAGTGTT+TGG - Chr3:74174925-74174944 MsG0380015719.01.T01:intron 30.0%
TTAATTACCTGCTAAGTAGT+TGG - Chr3:74175545-74175564 MsG0380015719.01.T01:intron 30.0%
TTATAAACCAACTACTTAGC+AGG + Chr3:74175555-74175574 None:intergenic 30.0%
TTGAAATGTGTGTGATGATT+TGG - Chr3:74174209-74174228 MsG0380015719.01.T01:intron 30.0%
! AATTTAGTTTCGAAACAGCT+AGG - Chr3:74175466-74175485 MsG0380015719.01.T01:CDS 30.0%
! AGAATCGTTGATTACATTGA+GGG - Chr3:74174732-74174751 MsG0380015719.01.T01:intron 30.0%
! AGTAGTTGGTTTATAACATG+TGG - Chr3:74175559-74175578 MsG0380015719.01.T01:intron 30.0%
! ATCTTTTCTTTCTTGTTCAC+CGG + Chr3:74175225-74175244 None:intergenic 30.0%
! ATTCATGTGACGATACATTT+TGG + Chr3:74177902-74177921 None:intergenic 30.0%
! TTTATATCGGTTGTGTAAAG+AGG - Chr3:74177091-74177110 MsG0380015719.01.T01:intron 30.0%
!! ACACACTTGTTATGGTTAAA+AGG + Chr3:74174986-74175005 None:intergenic 30.0%
!!! AGAGCTGTTTCTTTTATATC+AGG - Chr3:74175676-74175695 MsG0380015719.01.T01:intron 30.0%
!!! AGATTTGATTTGGCATTTTG+TGG - Chr3:74176926-74176945 MsG0380015719.01.T01:intron 30.0%
!!! CATCTTTTTCAGTATCTACA+AGG + Chr3:74174526-74174545 None:intergenic 30.0%
!!! TTAGTTTTTGGGATCGAATT+CGG - Chr3:74176775-74176794 MsG0380015719.01.T01:intron 30.0%
AAATTGGAGGTGGAAAAGAA+AGG - Chr3:74175074-74175093 MsG0380015719.01.T01:three_prime_UTR 35.0%
AATCGAAAACTCAAGCCATT+AGG + Chr3:74175430-74175449 None:intergenic 35.0%
ACTATTATGAGATACCTCGA+AGG + Chr3:74176313-74176332 None:intergenic 35.0%
AGTCATGCCTAACTAGTATA+TGG - Chr3:74176330-74176349 MsG0380015719.01.T01:CDS 35.0%
AGTGTATAGTAACAAAGAGC+GGG - Chr3:74176671-74176690 MsG0380015719.01.T01:intron 35.0%
CACCTACATAAGCATATGAT+AGG - Chr3:74177318-74177337 MsG0380015719.01.T01:intron 35.0%
CAGAGATGATAGTAAGTTAG+TGG - Chr3:74176747-74176766 MsG0380015719.01.T01:intron 35.0%
CTGAAATCAACTCATGACTT+AGG + Chr3:74175980-74175999 None:intergenic 35.0%
CTTATGTAGGTGTAAAATGG+AGG + Chr3:74177310-74177329 None:intergenic 35.0%
GACCTATCATATGCTTATGT+AGG + Chr3:74177323-74177342 None:intergenic 35.0%
GATGAAAATCTTACTGGATC+AGG + Chr3:74176090-74176109 None:intergenic 35.0%
TAAATCAGGTTTCCATGTGT+AGG - Chr3:74177464-74177483 MsG0380015719.01.T01:intron 35.0%
TACGGTGAATTGCTCAAAAT+TGG - Chr3:74175058-74175077 MsG0380015719.01.T01:intron 35.0%
TACTACTTATCTGCTTCCTA+TGG + Chr3:74174188-74174207 None:intergenic 35.0%
TCAGTATGGTATGATCTATG+TGG - Chr3:74176221-74176240 MsG0380015719.01.T01:intron 35.0%
TGACATATTGCTTCTCAAGA+AGG + Chr3:74176955-74176974 None:intergenic 35.0%
TGATCTCAAATGTATCATGC+AGG - Chr3:74176834-74176853 MsG0380015719.01.T01:CDS 35.0%
TGGTATGCAAGGAAAAACTA+AGG - Chr3:74174229-74174248 MsG0380015719.01.T01:intron 35.0%
TTTCAATGATACCTTCCAAG+AGG - Chr3:74174559-74174578 MsG0380015719.01.T01:intron 35.0%
TTTCCAACTACAGGGAAAAA+CGG - Chr3:74175859-74175878 MsG0380015719.01.T01:intron 35.0%
! AACAACAGACACACTTGTTA+TGG + Chr3:74174994-74175013 None:intergenic 35.0%
! ATCGGGCTAAATTACACTTT+TGG - Chr3:74177731-74177750 MsG0380015719.01.T01:CDS 35.0%
! ATTTATTGGGTGTCACCTAA+TGG - Chr3:74175412-74175431 MsG0380015719.01.T01:intron 35.0%
! GAGAATCGTTGATTACATTG+AGG - Chr3:74174731-74174750 MsG0380015719.01.T01:intron 35.0%
! GATGCTGTATTTGACTTCAT+TGG - Chr3:74176887-74176906 MsG0380015719.01.T01:CDS 35.0%
! TGTTATTTACAGATGTGTCG+TGG - Chr3:74176600-74176619 MsG0380015719.01.T01:intron 35.0%
!! AGCACTGATAGAAATAGTGA+AGG + Chr3:74177014-74177033 None:intergenic 35.0%
!! CTAAGTCATGAGTTGATTTC+AGG - Chr3:74175978-74175997 MsG0380015719.01.T01:intron 35.0%
!! TCAATTCCTCATTTGTTGTC+AGG - Chr3:74177033-74177052 MsG0380015719.01.T01:CDS 35.0%
!!! TAGTTTTTGGGATCGAATTC+GGG - Chr3:74176776-74176795 MsG0380015719.01.T01:intron 35.0%
!!! TTACTGGATCAGGCTTTTTT+CGG + Chr3:74176080-74176099 None:intergenic 35.0%
AAAAACTAAGGCAATGGCCA+TGG - Chr3:74174241-74174260 MsG0380015719.01.T01:intron 40.0%
AAATCAAATCTCTCCTCAGG+AGG + Chr3:74176917-74176936 None:intergenic 40.0%
ACAGCGTACTTTAACAAGAC+AGG - Chr3:74175179-74175198 MsG0380015719.01.T01:CDS 40.0%
ACAGTCAAAAAGAAGAGCTG+AGG + Chr3:74174495-74174514 None:intergenic 40.0%
CAACAATGAAGCAGAGGAAA+TGG + Chr3:74174288-74174307 None:intergenic 40.0%
CAATATGTCAGCTAGCAAAC+TGG - Chr3:74176965-74176984 MsG0380015719.01.T01:intron 40.0%
CAATTCTACAGTTGCTGGAT+AGG + Chr3:74176478-74176497 None:intergenic 40.0%
CAGTCAAAAAGAAGAGCTGA+GGG + Chr3:74174494-74174513 None:intergenic 40.0%
CCAGCAACTGTAGAATTGTA+TGG - Chr3:74176480-74176499 MsG0380015719.01.T01:intron 40.0%
CCATACAATTCTACAGTTGC+TGG + Chr3:74176483-74176502 None:intergenic 40.0%
CCTATAACGTGTAGAAATGG+AGG + Chr3:74177357-74177376 None:intergenic 40.0%
CCTCCATTTCTACACGTTAT+AGG - Chr3:74177354-74177373 MsG0380015719.01.T01:intron 40.0%
GAATTGCTCAAAATTGGAGG+TGG - Chr3:74175064-74175083 MsG0380015719.01.T01:three_prime_UTR 40.0%
GCAAGGAAAAACTAAGGCAA+TGG - Chr3:74174235-74174254 MsG0380015719.01.T01:intron 40.0%
GCGAAAATCCAGATATTTGC+AGG - Chr3:74176042-74176061 MsG0380015719.01.T01:intron 40.0%
GCGAAAGACAGAACTATTCA+TGG - Chr3:74175265-74175284 MsG0380015719.01.T01:intron 40.0%
GCTTGCAGCTAGTATATAGA+TGG + Chr3:74176275-74176294 None:intergenic 40.0%
GGTGAATTGCTCAAAATTGG+AGG - Chr3:74175061-74175080 MsG0380015719.01.T01:intron 40.0%
TAACCAACTTTGCAACACCT+GGG + Chr3:74175322-74175341 None:intergenic 40.0%
TATACATACCGCCTTCTCAT+TGG + Chr3:74175810-74175829 None:intergenic 40.0%
TATCAACTTCAACAGCCAGA+AGG - Chr3:74174423-74174442 MsG0380015719.01.T01:intron 40.0%
TCCTGAGGAGAGATTTGATT+TGG - Chr3:74176916-74176935 MsG0380015719.01.T01:CDS 40.0%
TCGATTCAACAATGAAGCAG+AGG + Chr3:74174294-74174313 None:intergenic 40.0%
TGAGTTGTGCAGAAAGAACT+AGG - Chr3:74175013-74175032 MsG0380015719.01.T01:three_prime_UTR 40.0%
TGTGTTATGCTCTTTGTGAC+AGG - Chr3:74176249-74176268 MsG0380015719.01.T01:intron 40.0%
TTATCTGCTTCCTATGGAGT+GGG + Chr3:74174182-74174201 None:intergenic 40.0%
TTTCTTTCTTGTTCACCGGT+CGG + Chr3:74175221-74175240 None:intergenic 40.0%
! AAGAGCTTTGACAGTGAAAG+AGG + Chr3:74174399-74174418 None:intergenic 40.0%
! AGAAATGGAGGTGTAACTCA+TGG + Chr3:74177345-74177364 None:intergenic 40.0%
! GATCCTTCTTGTTGTGCTTA+AGG + Chr3:74174352-74174371 None:intergenic 40.0%
! GATGCTATTTGTTGATGCCA+TGG + Chr3:74174261-74174280 None:intergenic 40.0%
!! GCTCTTCTTTTTGACTGTGA+TGG - Chr3:74174497-74174516 MsG0380015719.01.T01:intron 40.0%
!! GTGTGATGATTTGGTATGCA+AGG - Chr3:74174218-74174237 MsG0380015719.01.T01:intron 40.0%
!!! TACTGGATCAGGCTTTTTTC+GGG + Chr3:74176079-74176098 None:intergenic 40.0%
AACATACAGGCTTGTCGATC+AGG - Chr3:74175745-74175764 MsG0380015719.01.T01:intron 45.0%
AATTAACGGTCCCACTCCAT+AGG - Chr3:74174169-74174188 MsG0380015719.01.T01:three_prime_UTR 45.0%
AGAAAGAACTAGGCGTTACC+TGG - Chr3:74175023-74175042 MsG0380015719.01.T01:three_prime_UTR 45.0%
ATACTAGCTGCAAGCACTCT+CGG - Chr3:74176280-74176299 MsG0380015719.01.T01:intron 45.0%
CCTCCTTAAGCACAACAAGA+AGG - Chr3:74174346-74174365 MsG0380015719.01.T01:intron 45.0%
CGTACTTTAACAAGACAGGC+TGG - Chr3:74175183-74175202 MsG0380015719.01.T01:CDS 45.0%
CTTATCTGCTTCCTATGGAG+TGG + Chr3:74174183-74174202 None:intergenic 45.0%
GAAAGAACTAGGCGTTACCT+GGG - Chr3:74175024-74175043 MsG0380015719.01.T01:three_prime_UTR 45.0%
GCCAAATCAAATCTCTCCTC+AGG + Chr3:74176920-74176939 None:intergenic 45.0%
GGTAAGCCTGACAACAAATG+AGG + Chr3:74177042-74177061 None:intergenic 45.0%
GTAACCAACTTTGCAACACC+TGG + Chr3:74175323-74175342 None:intergenic 45.0%
TCATGACTTAGGTCCTGAGA+TGG + Chr3:74175969-74175988 None:intergenic 45.0%
TGGGGTGAAACTCCTTCAAA+AGG - Chr3:74177528-74177547 MsG0380015719.01.T01:intron 45.0%
TTGCAGCACTTCCAATGAGA+AGG - Chr3:74175796-74175815 MsG0380015719.01.T01:CDS 45.0%
! AAAAAGCATGAGGCACCTCT+TGG + Chr3:74174577-74174596 None:intergenic 45.0%
! CCTTCTTGTTGTGCTTAAGG+AGG + Chr3:74174349-74174368 None:intergenic 45.0%
! GTCGATCAGGCTTTAACTCA+AGG - Chr3:74175758-74175777 MsG0380015719.01.T01:intron 45.0%
!!! ACTGGATCAGGCTTTTTTCG+GGG + Chr3:74176078-74176097 None:intergenic 45.0%
!! ACTATATTAAAATAAAATAA+AGG + Chr3:74177606-74177625 None:intergenic 5.0%
ACCTGGGACGTGGAATTGTA+CGG - Chr3:74175040-74175059 MsG0380015719.01.T01:intron 50.0%
CAGCACTTCCAATGAGAAGG+CGG - Chr3:74175799-74175818 MsG0380015719.01.T01:CDS 50.0%
CCACGTCTCCTGCAAATATC+TGG + Chr3:74176053-74176072 None:intergenic 50.0%
CCAGATATTTGCAGGAGACG+TGG - Chr3:74176050-74176069 MsG0380015719.01.T01:intron 50.0%
TAGCAGCAGCTAAAGCAGCT+GGG - Chr3:74176644-74176663 MsG0380015719.01.T01:intron 50.0%
TTACAGATGTGTCGTGGTCG+AGG - Chr3:74176606-74176625 MsG0380015719.01.T01:intron 50.0%
! CTTCATTGGTGATCCTCCTG+AGG - Chr3:74176901-74176920 MsG0380015719.01.T01:CDS 50.0%
! TAGGTTGAGTTGCTCAGCCT+CGG - Chr3:74174448-74174467 MsG0380015719.01.T01:intron 50.0%
AAACTGTTGCCTCTTCGCCC+AGG - Chr3:74175302-74175321 MsG0380015719.01.T01:intron 55.0%
ACCGTACAATTCCACGTCCC+AGG + Chr3:74175044-74175063 None:intergenic 55.0%
CTAGCAGCAGCTAAAGCAGC+TGG - Chr3:74176643-74176662 MsG0380015719.01.T01:intron 55.0%
GCAACTCAACCTACGCCTTC+TGG + Chr3:74174441-74174460 None:intergenic 55.0%
GTGGTCGAGGACAGTGCAAT+AGG - Chr3:74176619-74176638 MsG0380015719.01.T01:intron 55.0%
TTTGCAACACCTGGGCGAAG+AGG + Chr3:74175314-74175333 None:intergenic 55.0%
! AGCATGAGGCACCTCTTGGA+AGG + Chr3:74174573-74174592 None:intergenic 55.0%
! CTTCAACAGCCAGAAGGCGT+AGG - Chr3:74174429-74174448 MsG0380015719.01.T01:intron 55.0%
! TCGCCCAGGTGTTGCAAAGT+TGG - Chr3:74175316-74175335 MsG0380015719.01.T01:intron 55.0%
! TGGATTTTCGCTGCTCGCTC+AGG + Chr3:74176033-74176052 None:intergenic 55.0%
!! CTCTCGGTGTTGAACCTTCG+AGG - Chr3:74176296-74176315 MsG0380015719.01.T01:CDS 55.0%
!! TACTGGCTCAACCACCAGAG+CGG - Chr3:74174897-74174916 MsG0380015719.01.T01:intron 55.0%
!!! GGGCCGTTTTTCCCTGTAGT+TGG + Chr3:74175865-74175884 None:intergenic 55.0%
ACTAGGCGTTACCTGGGACG+TGG - Chr3:74175030-74175049 MsG0380015719.01.T01:intron 60.0%
CGTAGAAGATGCCGAAGCCG+AGG + Chr3:74174468-74174487 None:intergenic 60.0%
GAGTTGCTCAGCCTCGGCTT+CGG - Chr3:74174454-74174473 MsG0380015719.01.T01:intron 60.0%
TCACCGGTCGGTGCATTCGC+AGG + Chr3:74175209-74175228 None:intergenic 65.0%
! TGGCCTGCGAATGCACCGAC+CGG - Chr3:74175203-74175222 MsG0380015719.01.T01:CDS 65.0%
!! TCGTTTCCAAGGCGCCGCTC+TGG + Chr3:74174914-74174933 None:intergenic 65.0%
!! TTTCCAAGGCGCCGCTCTGG+TGG + Chr3:74174911-74174930 None:intergenic 65.0%
CAACCACCAGAGCGGCGCCT+TGG - Chr3:74174905-74174924 MsG0380015719.01.T01:intron 70.0%
Chromosome Type Strat End Strand Name
Chr3 gene 74174167 74177943 74174167 ID=MsG0380015719.01;Name=MsG0380015719.01
Chr3 mRNA 74174167 74177943 74174167 ID=MsG0380015719.01.T01;Parent=MsG0380015719.01;Name=MsG0380015719.01.T01;_AED=0.48;_eAED=0.48;_QI=66|0.87|1|1|0.75|0.66|9|236|298
Chr3 exon 74174167 74174227 74174167 ID=MsG0380015719.01.T01:exon:913;Parent=MsG0380015719.01.T01
Chr3 exon 74174936 74175043 74174936 ID=MsG0380015719.01.T01:exon:912;Parent=MsG0380015719.01.T01
Chr3 exon 74175064 74175254 74175064 ID=MsG0380015719.01.T01:exon:911;Parent=MsG0380015719.01.T01
Chr3 five_prime_UTR 74177878 74177943 74177878 ID=MsG0380015719.01.T01:five_prime_utr;Parent=MsG0380015719.01.T01
Chr3 CDS 74177530 74177877 74177530 ID=MsG0380015719.01.T01:cds;Parent=MsG0380015719.01.T01
Chr3 CDS 74177015 74177085 74177015 ID=MsG0380015719.01.T01:cds;Parent=MsG0380015719.01.T01
Chr3 CDS 74176777 74176935 74176777 ID=MsG0380015719.01.T01:cds;Parent=MsG0380015719.01.T01
Chr3 CDS 74176290 74176356 74176290 ID=MsG0380015719.01.T01:cds;Parent=MsG0380015719.01.T01
Chr3 CDS 74175793 74175839 74175793 ID=MsG0380015719.01.T01:cds;Parent=MsG0380015719.01.T01
Chr3 CDS 74175418 74175498 74175418 ID=MsG0380015719.01.T01:cds;Parent=MsG0380015719.01.T01
Chr3 CDS 74175131 74175254 74175131 ID=MsG0380015719.01.T01:cds;Parent=MsG0380015719.01.T01
Chr3 three_prime_UTR 74175064 74175130 74175064 ID=MsG0380015719.01.T01:three_prime_utr;Parent=MsG0380015719.01.T01
Chr3 three_prime_UTR 74174936 74175043 74174936 ID=MsG0380015719.01.T01:three_prime_utr;Parent=MsG0380015719.01.T01
Chr3 three_prime_UTR 74174167 74174227 74174167 ID=MsG0380015719.01.T01:three_prime_utr;Parent=MsG0380015719.01.T01
Chr3 mRNA 74175003 74177943 74175003 ID=MsG0380015719.01.T02;Parent=MsG0380015719.01;Name=MsG0380015719.01.T02;_AED=0.48;_eAED=0.48;_QI=66|0.85|1|1|0.85|0.75|8|108|298
Chr3 exon 74175003 74175083 74175003 ID=MsG0380015719.01.T02:exon:915;Parent=MsG0380015719.01.T02
Chr3 exon 74175104 74175254 74175104 ID=MsG0380015719.01.T02:exon:914;Parent=MsG0380015719.01.T02
Chr3 five_prime_UTR 74177878 74177943 74177878 ID=MsG0380015719.01.T02:five_prime_utr;Parent=MsG0380015719.01.T02
Chr3 CDS 74177530 74177877 74177530 ID=MsG0380015719.01.T02:cds;Parent=MsG0380015719.01.T02
Chr3 CDS 74177015 74177085 74177015 ID=MsG0380015719.01.T02:cds;Parent=MsG0380015719.01.T02
Chr3 CDS 74176777 74176935 74176777 ID=MsG0380015719.01.T02:cds;Parent=MsG0380015719.01.T02
Chr3 CDS 74176290 74176356 74176290 ID=MsG0380015719.01.T02:cds;Parent=MsG0380015719.01.T02
Chr3 CDS 74175793 74175839 74175793 ID=MsG0380015719.01.T02:cds;Parent=MsG0380015719.01.T02
Chr3 CDS 74175418 74175498 74175418 ID=MsG0380015719.01.T02:cds;Parent=MsG0380015719.01.T02
Chr3 CDS 74175131 74175254 74175131 ID=MsG0380015719.01.T02:cds;Parent=MsG0380015719.01.T02
Chr3 three_prime_UTR 74175104 74175130 74175104 ID=MsG0380015719.01.T02:three_prime_utr;Parent=MsG0380015719.01.T02
Chr3 three_prime_UTR 74175003 74175083 74175003 ID=MsG0380015719.01.T02:three_prime_utr;Parent=MsG0380015719.01.T02
Chr3 mRNA 74174873 74177943 74174873 ID=MsG0380015719.01.T03;Parent=MsG0380015719.01;Name=MsG0380015719.01.T03;_AED=0.48;_eAED=0.48;_QI=66|0.83|1|1|1|1|7|258|298
Chr3 exon 74174873 74175254 74174873 ID=MsG0380015719.01.T03:exon:916;Parent=MsG0380015719.01.T03
Chr3 five_prime_UTR 74177878 74177943 74177878 ID=MsG0380015719.01.T03:five_prime_utr;Parent=MsG0380015719.01.T03
Chr3 CDS 74177530 74177877 74177530 ID=MsG0380015719.01.T03:cds;Parent=MsG0380015719.01.T03
Chr3 CDS 74177015 74177085 74177015 ID=MsG0380015719.01.T03:cds;Parent=MsG0380015719.01.T03
Chr3 CDS 74176777 74176935 74176777 ID=MsG0380015719.01.T03:cds;Parent=MsG0380015719.01.T03
Chr3 CDS 74176290 74176356 74176290 ID=MsG0380015719.01.T03:cds;Parent=MsG0380015719.01.T03
Chr3 CDS 74175793 74175839 74175793 ID=MsG0380015719.01.T03:cds;Parent=MsG0380015719.01.T03
Chr3 CDS 74175418 74175498 74175418 ID=MsG0380015719.01.T03:cds;Parent=MsG0380015719.01.T03
Chr3 CDS 74175131 74175254 74175131 ID=MsG0380015719.01.T03:cds;Parent=MsG0380015719.01.T03
Chr3 three_prime_UTR 74174873 74175130 74174873 ID=MsG0380015719.01.T03:three_prime_utr;Parent=MsG0380015719.01.T03
Gene Sequence

>MsG0380015719.01.T03

ATGCAAGGAAAAACTAAGGCAATGGCCATGGCATCAACAAATAGCATCATCTCCATTTCCTCTGCTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTATAAGCCTCCTTAAGCACAACAAGAAGGATCATGAACAACACAGTAATTCAACATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAGCCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCTACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTAGATACTGAAAAAGATGGTCACCGCATTTCTTTCAATGATACCTTCCAAGAGAAAGAACTAGGCGTTACCTGGGACGTGGAATTGTACGGTGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTTAACAAGACAGGCTGGCCTGCGAATGCACCGACCGGTGAACAAGAAAGAAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAACGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGCCATCTATATACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCGAGATGTGTCGTGGTCGAGGACAGTGCAATAGGTCTAGCAGCAGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

>MsG0380015719.01.T02

ATGCAAGGAAAAACTAAGGCAATGGCCATGGCATCAACAAATAGCATCATCTCCATTTCCTCTGCTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTATAAGCCTCCTTAAGCACAACAAGAAGGATCATGAACAACACAGTAATTCAACATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAGCCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCTACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTAGATACTGAAAAAGATGGTCACCGCATTTCTTTCAATGATACCTTCCAAGAGAAAGAACTAGGCGTTACCTGGGACGTGGAATTGTACGGTGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTTAACAAGACAGGCTGGCCTGCGAATGCACCGACCGGTGAACAAGAAAGAAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAACGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGCCATCTATATACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCGAGATGTGTCGTGGTCGAGGACAGTGCAATAGGTCTAGCAGCAGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

>MsG0380015719.01.T01

ATGCAAGGAAAAACTAAGGCAATGGCCATGGCATCAACAAATAGCATCATCTCCATTTCCTCTGCTTCATTGTTGAATCGAACTCATCAACCAAAAACAACAACACTTATAAGCCTCCTTAAGCACAACAAGAAGGATCATGAACAACACAGTAATTCAACATCCTCTTTCACTGTCAAAGCTCTTAAGATATCAACTTCAACAGCCAGAAGGCGTAGGTTGAGTTGCTCAGCCTCGGCTTCGGCATCTTCTACGCTTCCCTCAGCTCTTCTTTTTGACTGTGATGGAGTCCTTGTAGATACTGAAAAAGATGGTCACCGCATTTCTTTCAATGATACCTTCCAAGAGAAAGAACTAGGCGTTACCTGGGACGTGGAATTGTACGGTGAATTGCTCAAAATTGGAGGTGGAAAAGAAAGGATGACAGCGTACTTTAACAAGACAGGCTGGCCTGCGAATGCACCGACCGGTGAACAAGAAAGAAAAGATTTCATAGCTTCACTTCACAAGCGAAAGACAGAACTATTCATGGAACTTGTTGAGAAAAAACTGTTGCCTCTTCGCCCAGGTGTTGCAAAGCTTGTCGATCAGGCTTTAACTCAAGGAGTCAACGTTGCAGTTTGCAGCACTTCCAATGAGAAGGCGGCCATCTATATACTAGCTGCAAGCACTCTCGGTGTTGAACCTTCGAGATGTGTCGTGGTCGAGGACAGTGCAATAGGTCTAGCAGCAGCTAAAGCAGCTGGGATGAAGTGTATAGTAACAAAGAGCGGGTATACAGCAGATGAAGATTTCTTAAATGCAGATGCTGTATTTGACTTCATTGGTGATCCTCCTGAGGAGAGATTTGATTTGGCATTTTGTGGTAGCCTTCTTGAGAAGCAATATGTCAGCTAG

Protein sequence

>MsG0380015719.01.T03

MQGKTKAMAMASTNSIISISSASLLNRTHQPKTTTLISLLKHNKKDHEQHSNSTSSFTVKALKISTSTARRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAAIYILAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS*

>MsG0380015719.01.T02

MQGKTKAMAMASTNSIISISSASLLNRTHQPKTTTLISLLKHNKKDHEQHSNSTSSFTVKALKISTSTARRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAAIYILAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS*

>MsG0380015719.01.T01

MQGKTKAMAMASTNSIISISSASLLNRTHQPKTTTLISLLKHNKKDHEQHSNSTSSFTVKALKISTSTARRRRLSCSASASASSTLPSALLFDCDGVLVDTEKDGHRISFNDTFQEKELGVTWDVELYGELLKIGGGKERMTAYFNKTGWPANAPTGEQERKDFIASLHKRKTELFMELVEKKLLPLRPGVAKLVDQALTQGVNVAVCSTSNEKAAIYILAASTLGVEPSRCVVVEDSAIGLAAAKAAGMKCIVTKSGYTADEDFLNADAVFDFIGDPPEERFDLAFCGSLLEKQYVS*