AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0580025513.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025513.01.T01 MTR_5g030020 88.571 315 25 4 1 313 1 306 6.34e-165 462
MsG0580025513.01.T01 MTR_7g106440 28.896 308 171 9 11 293 21 305 8.86e-32 121
MsG0580025513.01.T01 MTR_1g056520 35.938 192 96 6 95 275 108 283 5.00e-30 116
MsG0580025513.01.T01 MTR_3g099590 33.463 257 144 8 53 308 60 290 3.99e-28 110
MsG0580025513.01.T01 MTR_3g075500 37.500 184 104 4 97 278 111 285 5.96e-28 110
MsG0580025513.01.T01 MTR_1g045510 34.409 186 107 4 94 278 112 283 1.14e-26 106
MsG0580025513.01.T01 MTR_3g075500 37.870 169 94 4 97 263 111 270 2.07e-24 100
MsG0580025513.01.T01 MTR_4g104470 31.016 187 117 4 97 282 124 299 8.48e-24 99.4
MsG0580025513.01.T01 MTR_1g064230 27.007 274 153 9 37 281 23 278 7.33e-19 85.1
MsG0580025513.01.T01 MTR_3g027140 30.811 185 109 6 95 272 60 232 8.55e-17 78.6
MsG0580025513.01.T01 MTR_7g102730 27.556 225 140 8 96 314 99 306 1.09e-14 75.1
MsG0580025513.01.T01 MTR_7g102730 27.461 193 118 5 96 278 190 370 2.30e-11 65.1
MsG0580025513.01.T01 MTR_1g061870 24.731 279 160 9 60 305 50 311 1.43e-14 74.3
MsG0580025513.01.T01 MTR_6g040070 30.729 192 114 7 96 278 106 287 5.43e-13 70.1
MsG0580025513.01.T01 MTR_1g097440 30.198 202 102 9 96 278 210 391 6.33e-12 66.6
MsG0580025513.01.T01 MTR_6g040190 29.167 192 117 6 96 278 201 382 4.47e-11 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0580025513.01.T01 AT2G35410 49.071 269 116 6 22 282 23 278 6.32e-79 243
MsG0580025513.01.T01 AT4G09040 36.458 192 108 3 92 280 31 211 1.58e-31 118
MsG0580025513.01.T01 AT4G09040 36.458 192 108 3 92 280 91 271 7.09e-31 118
MsG0580025513.01.T01 AT5G50250 31.271 291 149 8 30 280 9 288 6.97e-30 115
MsG0580025513.01.T01 AT4G24770 35.714 182 107 3 97 278 152 323 6.63e-27 108
MsG0580025513.01.T01 AT4G24770 35.714 182 107 3 97 278 152 323 6.63e-27 108
MsG0580025513.01.T01 AT3G52380 30.303 198 109 5 97 280 118 300 1.07e-26 107
MsG0580025513.01.T01 AT1G60000 29.703 202 125 5 81 278 68 256 8.80e-23 95.5
MsG0580025513.01.T01 AT1G01080 31.892 185 110 5 97 273 110 286 5.16e-19 85.9
MsG0580025513.01.T01 AT3G52150 29.464 224 130 7 58 272 46 250 2.81e-17 80.5
MsG0580025513.01.T01 AT3G52150 29.464 224 130 7 58 272 46 250 2.81e-17 80.5
MsG0580025513.01.T01 AT1G01080 30.811 185 111 5 97 273 110 285 6.89e-17 79.7
MsG0580025513.01.T01 AT1G01080 31.176 170 101 4 97 258 110 271 2.61e-15 75.5
MsG0580025513.01.T01 AT4G34110 29.293 198 108 6 96 278 216 396 5.53e-13 69.7
MsG0580025513.01.T01 AT1G22760 26.293 232 140 7 94 314 135 346 1.53e-12 68.6
MsG0580025513.01.T01 AT1G49760 25.962 208 130 7 96 295 134 325 1.92e-12 68.2
MsG0580025513.01.T01 AT1G49760 25.962 208 130 7 96 295 134 325 1.92e-12 68.2
MsG0580025513.01.T01 AT3G16380 26.066 211 135 5 77 278 184 382 2.22e-11 65.1

Find 79 sgRNAs with CRISPR-Local

Find 395 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTGGGAGCTGGAGGAGGTGG+AGG 0.249111 5:+19856767 None:intergenic
ACTTCTTCACTTCCAGCTTC+TGG 0.261287 5:+19854034 None:intergenic
AGGTTATACATTTGTTACTA+TGG 0.261835 5:-19858705 MsG0580025513.01.T01:CDS
AGTTGAAGCATGGAGTTTAA+TGG 0.267862 5:+19859353 None:intergenic
ACATTTGTTACTATGGATTC+AGG 0.282353 5:-19858698 MsG0580025513.01.T01:CDS
ATTAGGATTTATGACTCTTC+TGG 0.285662 5:+19853986 None:intergenic
GTGGATATTGTGAGAGAAAA+TGG 0.287566 5:+19859308 None:intergenic
CATGTACTGATATTTGGATA+TGG 0.347627 5:-19853959 MsG0580025513.01.T01:three_prime_UTR
TAAAGCGTAGCAGAGTGTTT+TGG 0.351271 5:+19859254 None:intergenic
GGAGCTGGAGGAGGTGGAGG+AGG 0.377123 5:+19856770 None:intergenic
GGAGTGGGAGCTGGAGGAGG+TGG 0.381685 5:+19856764 None:intergenic
AAATATCAGGCCGGATAGTA+AGG 0.395140 5:-19856820 MsG0580025513.01.T01:CDS
CTTCCCTTGCAAAGCAGAAA+TGG 0.396033 5:+19856553 None:intergenic
TCTGTATACATGAGGTAATC+AGG 0.398193 5:+19853896 None:intergenic
ATCCCTTTGCAGGAGTTACT+TGG 0.398199 5:-19854142 MsG0580025513.01.T01:intron
TAGATTGTAAAGAGCAAAGA+TGG 0.398666 5:-19858737 MsG0580025513.01.T01:CDS
GGTGGGAAATCTGCTGGGTA+TGG 0.419393 5:-19856614 MsG0580025513.01.T01:CDS
AAGACAACCCTGGCTGAAAC+TGG 0.421042 5:+19856647 None:intergenic
AGCAAAGATGGGAAGGGAAA+AGG 0.425037 5:-19858725 MsG0580025513.01.T01:CDS
ACCCCTGGTGGGAAATCTGC+TGG 0.433529 5:-19856620 MsG0580025513.01.T01:CDS
TTAGGAGTGGGAGCTGGAGG+AGG 0.441065 5:+19856761 None:intergenic
ATTACATAACGTGCTTCCTT+AGG 0.449237 5:+19856743 None:intergenic
AGGGTTGTCTTTCAAACCCC+TGG 0.459212 5:-19856635 MsG0580025513.01.T01:CDS
GCCTTGGTCTCTTTCTAAGC+CGG 0.461671 5:-19859136 MsG0580025513.01.T01:CDS
TGGATTTGTTTCTTATCATA+CGG 0.462438 5:-19856594 MsG0580025513.01.T01:CDS
CAAATTCTACCCTTACTATC+CGG 0.462774 5:+19856810 None:intergenic
TCGTTGTCTTTAACTTGCCT+TGG 0.470028 5:-19859152 MsG0580025513.01.T01:CDS
TCAAAACACCAGTTTCAGCC+AGG 0.476508 5:-19856655 MsG0580025513.01.T01:CDS
TCTTTCTAAGCCGGATATCA+AGG 0.480039 5:-19859127 MsG0580025513.01.T01:CDS
GCGAAGAGATCCTTGATATC+CGG 0.480231 5:+19859117 None:intergenic
GCATGGAGTTTAATGGAATC+TGG 0.482931 5:+19859360 None:intergenic
GGATTCAGGAGAGGAGGCTC+AGG 0.485969 5:-19858684 MsG0580025513.01.T01:CDS
AAGAAGAAAAGTGAAGTTTG+TGG 0.493594 5:+19859289 None:intergenic
TCCTTAGGAGTGGGAGCTGG+AGG 0.495862 5:+19856758 None:intergenic
TAGATCTTGCTTTCCACGCA+AGG 0.504732 5:+19856708 None:intergenic
TGATATTTGGATATGGTATG+TGG 0.504794 5:-19853952 MsG0580025513.01.T01:three_prime_UTR
TTGATGTGTGAATACAGTTA+TGG 0.514213 5:+19859422 None:intergenic
GACGACACGCAACCAGAAGC+TGG 0.523376 5:-19854046 MsG0580025513.01.T01:CDS
TACCCAGCAGATTTCCCACC+AGG 0.524803 5:+19856617 None:intergenic
TCCTCCAGCTCCCACTCCTA+AGG 0.525600 5:-19856759 MsG0580025513.01.T01:CDS
TGTAAAGAGCAAAGATGGGA+AGG 0.529390 5:-19858732 MsG0580025513.01.T01:CDS
GCTTCCTTAGGAGTGGGAGC+TGG 0.530043 5:+19856755 None:intergenic
AAGGGATTGAAGTTGAAGCA+TGG 0.531889 5:+19859343 None:intergenic
TCATGTATACAGAGATATGA+AGG 0.545315 5:-19853886 MsG0580025513.01.T01:three_prime_UTR
GTTTGACATACCTTAAAATG+TGG 0.549505 5:-19853823 MsG0580025513.01.T01:three_prime_UTR
CTGCCATTTCTGCTTTGCAA+GGG 0.550388 5:-19856556 MsG0580025513.01.T01:CDS
GTTGATTCTAACGTTGCCAT+TGG 0.551004 5:+19859444 None:intergenic
CATTTCTGCTTTGCAAGGGA+AGG 0.553509 5:-19856552 MsG0580025513.01.T01:intron
GTAAGGGTAGAATTTGCAAA+GGG 0.556333 5:-19856803 MsG0580025513.01.T01:CDS
GAGAAGAAACCTCTACAAGC+TGG 0.559102 5:-19853926 MsG0580025513.01.T01:three_prime_UTR
GCTGCCATTTCTGCTTTGCA+AGG 0.563024 5:-19856557 MsG0580025513.01.T01:CDS
CCCCTGGTGGGAAATCTGCT+GGG 0.563781 5:-19856619 MsG0580025513.01.T01:CDS
TGTGTGGTTCAGGAAATATC+AGG 0.564742 5:-19856833 MsG0580025513.01.T01:intron
AGATTGTAAAGAGCAAAGAT+GGG 0.565774 5:-19858736 MsG0580025513.01.T01:CDS
TCTTGCTTTCCACGCAAGGT+TGG 0.567345 5:+19856712 None:intergenic
TACTATGGATTCAGGAGAGG+AGG 0.578732 5:-19858690 MsG0580025513.01.T01:CDS
TGTTTCTTATCATACGGAGG+AGG 0.584671 5:-19856588 MsG0580025513.01.T01:CDS
TGTTACTATGGATTCAGGAG+AGG 0.585105 5:-19858693 MsG0580025513.01.T01:CDS
CCCAGCAGATTTCCCACCAG+GGG 0.587328 5:+19856619 None:intergenic
TCTATGCATCCAACCTTGCG+TGG 0.590146 5:-19856721 MsG0580025513.01.T01:CDS
GTTGTCTTTCAAACCCCTGG+TGG 0.593929 5:-19856632 MsG0580025513.01.T01:CDS
CAAAACACCAGTTTCAGCCA+GGG 0.593941 5:-19856654 MsG0580025513.01.T01:CDS
GGTAAAACTCCAGCTTGTAG+AGG 0.605360 5:+19853917 None:intergenic
TAACGTGCTTCCTTAGGAGT+GGG 0.608846 5:+19856749 None:intergenic
AGTAAGGGTAGAATTTGCAA+AGG 0.608873 5:-19856804 MsG0580025513.01.T01:CDS
TTGTCTTTCAAACCCCTGGT+GGG 0.617575 5:-19856631 MsG0580025513.01.T01:CDS
ATAACGTGCTTCCTTAGGAG+TGG 0.620126 5:+19856748 None:intergenic
TTCATATCTCTGTATACATG+AGG 0.624417 5:+19853888 None:intergenic
GTAAAGAGCAAAGATGGGAA+GGG 0.628943 5:-19858731 MsG0580025513.01.T01:CDS
ACTCTGCTACGCTTTACAAG+AGG 0.635592 5:-19859247 MsG0580025513.01.T01:CDS
AATATCAGGCCGGATAGTAA+GGG 0.636833 5:-19856819 MsG0580025513.01.T01:CDS
AAGGATCTCTTCGCTCAATG+TGG 0.649377 5:-19859108 MsG0580025513.01.T01:CDS
ATTTGTTTCTTATCATACGG+AGG 0.652812 5:-19856591 MsG0580025513.01.T01:CDS
TGGTTCAGGAAATATCAGGC+CGG 0.653607 5:-19856829 MsG0580025513.01.T01:intron
ACCCAGCAGATTTCCCACCA+GGG 0.675913 5:+19856618 None:intergenic
TGGAACTGTAATTGACGTTG+AGG 0.676463 5:-19859088 MsG0580025513.01.T01:CDS
TCCGGCTTAGAAAGAGACCA+AGG 0.685478 5:+19859135 None:intergenic
AGGGGTTTGAAAGACAACCC+TGG 0.712579 5:+19856637 None:intergenic
AAGGCAAGTTAAAGACAACG+AGG 0.810771 5:+19859154 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAGATAATTAATTTTAC+TGG - Chr5:19855332-19855351 MsG0580025513.01.T01:intron 10.0%
!!! AATTTAGAATTTTCTTTTTA+AGG - Chr5:19855050-19855069 MsG0580025513.01.T01:intron 10.0%
!!! TGTTTTAATTTTTGAATTTT+TGG - Chr5:19854191-19854210 MsG0580025513.01.T01:intron 10.0%
!! AAAAATCTTTAATCTTGAAT+TGG - Chr5:19856845-19856864 MsG0580025513.01.T01:intron 15.0%
!! AAATAGAATGAAATAATCAT+TGG - Chr5:19854825-19854844 MsG0580025513.01.T01:intron 15.0%
!! ATAATGAATCTTCTTAATAA+TGG - Chr5:19854665-19854684 MsG0580025513.01.T01:intron 15.0%
!! CTTAACAAATAATATCTAAA+AGG + Chr5:19858751-19858770 None:intergenic 15.0%
!! GAAAAAAATTAAAGTTGTAT+TGG - Chr5:19854952-19854971 MsG0580025513.01.T01:intron 15.0%
!! GAATAAAAAATCATATGAAT+AGG - Chr5:19858794-19858813 MsG0580025513.01.T01:intron 15.0%
!! TTATAACATTAAAATTGTTG+AGG + Chr5:19857949-19857968 None:intergenic 15.0%
!!! AGTAAAAAACTTCATTTTTA+TGG + Chr5:19858213-19858232 None:intergenic 15.0%
!!! AGTTAAATTTGCTTATATTT+AGG + Chr5:19854362-19854381 None:intergenic 15.0%
!!! ATGAATAATATCTAAAACAT+AGG + Chr5:19855665-19855684 None:intergenic 15.0%
!!! ATTAAAGATTTTTTTCAACA+AGG + Chr5:19856838-19856857 None:intergenic 15.0%
!!! ATTTTGATTTTTGTATCTTT+AGG - Chr5:19857060-19857079 MsG0580025513.01.T01:intron 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG - Chr5:19854992-19855011 MsG0580025513.01.T01:intron 15.0%
!!! CTTTTAGATATTATTTGTTA+AGG - Chr5:19858749-19858768 MsG0580025513.01.T01:intron 15.0%
!!! TGTTTAAGTTATGTATTTTA+TGG - Chr5:19857094-19857113 MsG0580025513.01.T01:intron 15.0%
!! AACTAAAATGGTCATATTAA+AGG + Chr5:19856092-19856111 None:intergenic 20.0%
!! AGATAATCATATTACCTAAA+AGG - Chr5:19855995-19856014 MsG0580025513.01.T01:intron 20.0%
!! ATATCAGTACATGAAAAATT+AGG + Chr5:19859264-19859283 None:intergenic 20.0%
!! GATAATCATATTACCTAAAA+GGG - Chr5:19855996-19856015 MsG0580025513.01.T01:intron 20.0%
!! GTAAAATAAAAATAAATGCG+AGG + Chr5:19854604-19854623 None:intergenic 20.0%
!! GTTTAAAGATTATAGACTAA+TGG + Chr5:19857030-19857049 None:intergenic 20.0%
!! TAAATATTACTGTTCTTTGA+GGG - Chr5:19858269-19858288 MsG0580025513.01.T01:intron 20.0%
!! TAAGACTCAATAATATTGTT+TGG - Chr5:19857151-19857170 MsG0580025513.01.T01:intron 20.0%
!! TACTACATGATTGTTTAATT+TGG - Chr5:19854296-19854315 MsG0580025513.01.T01:intron 20.0%
!! TCAATAATATTGTTTGGATT+TGG - Chr5:19857157-19857176 MsG0580025513.01.T01:intron 20.0%
!! TTAAATATTACTGTTCTTTG+AGG - Chr5:19858268-19858287 MsG0580025513.01.T01:intron 20.0%
!! TTGAGACAATTTGATATTAA+TGG - Chr5:19856802-19856821 MsG0580025513.01.T01:CDS 20.0%
!!! AAAACATATGTTAATTTGGT+TGG - Chr5:19855848-19855867 MsG0580025513.01.T01:intron 20.0%
!!! AAACATATGTTAATTTGGTT+GGG - Chr5:19855849-19855868 MsG0580025513.01.T01:intron 20.0%
!!! AAACTTCATTTTTATGGTTT+TGG + Chr5:19858207-19858226 None:intergenic 20.0%
!!! AACCAAATTAACATATGTTT+TGG + Chr5:19855849-19855868 None:intergenic 20.0%
!!! AGTCAAATTTGCTTATATTT+AGG - Chr5:19854459-19854478 MsG0580025513.01.T01:intron 20.0%
!!! ATAAGCAAATTTGACTTTTT+AGG + Chr5:19854455-19854474 None:intergenic 20.0%
!!! ATTCATTTTTCATTCAACTT+CGG + Chr5:19856312-19856331 None:intergenic 20.0%
!!! ATTGTTTAATTTGGAGAAAT+GGG - Chr5:19854305-19854324 MsG0580025513.01.T01:intron 20.0%
!!! ATTTTTCATGTACTGATATT+TGG - Chr5:19859265-19859284 MsG0580025513.01.T01:CDS 20.0%
!!! CGTTTCTTTTTTAAGATTTT+GGG - Chr5:19857487-19857506 MsG0580025513.01.T01:intron 20.0%
!!! GTCTTTTTCTTATAAAGTAA+GGG + Chr5:19854873-19854892 None:intergenic 20.0%
!!! TAAACTTTATCCACATTTTA+AGG + Chr5:19859420-19859439 None:intergenic 20.0%
!!! TAATCAAAAATCCGATTTTA+AGG + Chr5:19857456-19857475 None:intergenic 20.0%
!!! TGTCTTTTTCTTATAAAGTA+AGG + Chr5:19854874-19854893 None:intergenic 20.0%
!!! TTCACAAGTATTTTTCAATT+AGG - Chr5:19859380-19859399 MsG0580025513.01.T01:CDS 20.0%
! AAAATGGAAAAAGAAGAAGA+AGG + Chr5:19853909-19853928 None:intergenic 25.0%
! AAATGGAAAAAGAAGAAGAA+GGG + Chr5:19853908-19853927 None:intergenic 25.0%
! AACAATTTAATTACTTGTCC+AGG + Chr5:19857790-19857809 None:intergenic 25.0%
! AATCTTAAAAAAGAAACGCA+TGG + Chr5:19857485-19857504 None:intergenic 25.0%
! AGTAAAGAATGAAACCAAAT+AGG + Chr5:19858969-19858988 None:intergenic 25.0%
! ATACAGAAAGGAAACTAAAA+TGG + Chr5:19856104-19856123 None:intergenic 25.0%
! ATATTGGTGCAAAAAAATAC+TGG + Chr5:19857546-19857565 None:intergenic 25.0%
! CATATGTAAATAAATAGCAG+AGG + Chr5:19856734-19856753 None:intergenic 25.0%
! CATTCAATTAATGATGTATG+TGG - Chr5:19854391-19854410 MsG0580025513.01.T01:intron 25.0%
! CATTCAATTAATGATGTATG+TGG + Chr5:19854410-19854391 None:intergenic 25.0%
! CCACAAATATAGAAAATAAG+AGG + Chr5:19855761-19855780 None:intergenic 25.0%
! CGATAAATGTAGAAAAGTAA+AGG + Chr5:19857410-19857429 None:intergenic 25.0%
! GAAAAAAAAGTTAAAGAAGC+TGG - Chr5:19859136-19859155 MsG0580025513.01.T01:CDS 25.0%
! GAGATATAACATATACAGAA+AGG + Chr5:19856116-19856135 None:intergenic 25.0%
! GTAAAGAATGAAACCAAATA+GGG + Chr5:19858968-19858987 None:intergenic 25.0%
! TAATATTGTTTGGATTTGGA+TGG - Chr5:19857161-19857180 MsG0580025513.01.T01:intron 25.0%
! TACTTGAAAAATGTCAAGAA+AGG - Chr5:19855462-19855481 MsG0580025513.01.T01:intron 25.0%
! TCTATAAAATAGATGCTGTA+GGG - Chr5:19857834-19857853 MsG0580025513.01.T01:intron 25.0%
! TGCCAAAACATATGTTAATT+TGG - Chr5:19855844-19855863 MsG0580025513.01.T01:intron 25.0%
! TGCTAAAATGTAAAAACTAG+AGG - Chr5:19855894-19855913 MsG0580025513.01.T01:intron 25.0%
! TTATCTATGTTATGAACTTC+TGG + Chr5:19855981-19856000 None:intergenic 25.0%
! TTCTATAAAATAGATGCTGT+AGG - Chr5:19857833-19857852 MsG0580025513.01.T01:intron 25.0%
! TTGTTGTGATACAATGAATT+TGG - Chr5:19858436-19858455 MsG0580025513.01.T01:intron 25.0%
! TTTACTAACAAAGCACATAA+GGG - Chr5:19858227-19858246 MsG0580025513.01.T01:intron 25.0%
!! AATTTGCTTATATTTAGGAC+CGG - Chr5:19854464-19854483 MsG0580025513.01.T01:intron 25.0%
!! AATTTGCTTATATTTAGGAC+CGG + Chr5:19854483-19854464 None:intergenic 25.0%
!! AGGTTATACATTTGTTACTA+TGG - Chr5:19854525-19854544 MsG0580025513.01.T01:intron 25.0%
!! ATATAAGCATACAACTTTTG+TGG - Chr5:19857289-19857308 MsG0580025513.01.T01:intron 25.0%
!! CTTAATTTTTACTTGGATTG+TGG - Chr5:19858876-19858895 MsG0580025513.01.T01:intron 25.0%
!! GAGTTTACATATAATTTTCC+TGG - Chr5:19859444-19859463 MsG0580025513.01.T01:CDS 25.0%
!! TAGCATGCTTAATTTTTACT+TGG - Chr5:19858869-19858888 MsG0580025513.01.T01:intron 25.0%
!! TGGATTTGTTTCTTATCATA+CGG - Chr5:19856636-19856655 MsG0580025513.01.T01:CDS 25.0%
!! TTTTACTAACAAAGCACATA+AGG - Chr5:19858226-19858245 MsG0580025513.01.T01:intron 25.0%
!!! CCTCTTATTTTCTATATTTG+TGG - Chr5:19855758-19855777 MsG0580025513.01.T01:intron 25.0%
!!! GATTGTTTAATTTGGAGAAA+TGG - Chr5:19854304-19854323 MsG0580025513.01.T01:intron 25.0%
!!! GCGTTTCTTTTTTAAGATTT+TGG - Chr5:19857486-19857505 MsG0580025513.01.T01:intron 25.0%
!!! GTTCATTTTTATACACAACA+TGG - Chr5:19858901-19858920 MsG0580025513.01.T01:intron 25.0%
!!! TAGAGATGATGCTTTTTTTT+TGG - Chr5:19856176-19856195 MsG0580025513.01.T01:intron 25.0%
!!! TGGTTGATAATATGAGATAA+AGG + Chr5:19855156-19855175 None:intergenic 25.0%
AAAGGAGTTGCAATTCATAA+GGG + Chr5:19855138-19855157 None:intergenic 30.0%
AAATTGTGTGAGAGAAAAGT+TGG - Chr5:19854912-19854931 MsG0580025513.01.T01:intron 30.0%
AAGAAGAAAAGTGAAGTTTG+TGG + Chr5:19853944-19853963 None:intergenic 30.0%
AATGTTATAAACTCTAACCC+AGG - Chr5:19857959-19857978 MsG0580025513.01.T01:intron 30.0%
ACTCTAGTGATCCTTAAAAT+CGG - Chr5:19857442-19857461 MsG0580025513.01.T01:intron 30.0%
AGATTGTAAAGAGCAAAGAT+GGG - Chr5:19854494-19854513 MsG0580025513.01.T01:intron 30.0%
AGTTATCATCTCATTGTTCA+TGG - Chr5:19856702-19856721 MsG0580025513.01.T01:CDS 30.0%
ATGACATGATTAAGAGTTTG+TGG - Chr5:19854255-19854274 MsG0580025513.01.T01:intron 30.0%
ATGTTATAAACTCTAACCCA+GGG - Chr5:19857960-19857979 MsG0580025513.01.T01:intron 30.0%
ATTAGGATTTATGACTCTTC+TGG + Chr5:19859247-19859266 None:intergenic 30.0%
ATTGTTAAGCTCAGATATGT+AGG - Chr5:19857667-19857686 MsG0580025513.01.T01:intron 30.0%
CACAAAAGTTGAATGAGATA+TGG + Chr5:19856351-19856370 None:intergenic 30.0%
CCTTCATAAGTATTTCATCT+GGG + Chr5:19855219-19855238 None:intergenic 30.0%
CTGTGAAGTTTAGTTATTTG+AGG - Chr5:19855804-19855823 MsG0580025513.01.T01:intron 30.0%
GACAATGCATAAAATATGCA+AGG + Chr5:19856227-19856246 None:intergenic 30.0%
GATGTATGTGGTTCATAATA+TGG + Chr5:19854418-19854437 None:intergenic 30.0%
GGAGATATAAAGGCTAAATA+TGG - Chr5:19857310-19857329 MsG0580025513.01.T01:intron 30.0%
GTGTCATGTAGTTGAAAATT+TGG - Chr5:19858513-19858532 MsG0580025513.01.T01:intron 30.0%
GTTTGACATACCTTAAAATG+TGG - Chr5:19859407-19859426 MsG0580025513.01.T01:CDS 30.0%
TAAAGGAGTTGCAATTCATA+AGG + Chr5:19855139-19855158 None:intergenic 30.0%
TAATAACCAATTGAGGCTTA+TGG - Chr5:19858648-19858667 MsG0580025513.01.T01:intron 30.0%
TACAATGAATTTGGTTACGT+TGG - Chr5:19858445-19858464 MsG0580025513.01.T01:intron 30.0%
TAGATTGTAAAGAGCAAAGA+TGG - Chr5:19854493-19854512 MsG0580025513.01.T01:intron 30.0%
TATGAATAGGCTTGTCTTTA+AGG - Chr5:19858807-19858826 MsG0580025513.01.T01:intron 30.0%
TCAAATAGCCAAGTAAAGTT+TGG + Chr5:19857187-19857206 None:intergenic 30.0%
TCATGTATACAGAGATATGA+AGG - Chr5:19859344-19859363 MsG0580025513.01.T01:CDS 30.0%
TCCAAAATGATGTGATTCTT+TGG + Chr5:19854731-19854750 None:intergenic 30.0%
TCCTTCATAAGTATTTCATC+TGG + Chr5:19855220-19855239 None:intergenic 30.0%
TGATATTTGGATATGGTATG+TGG - Chr5:19859278-19859297 MsG0580025513.01.T01:CDS 30.0%
TTCATATCTCTGTATACATG+AGG + Chr5:19859345-19859364 None:intergenic 30.0%
TTGATGTGTGAATACAGTTA+TGG + Chr5:19853811-19853830 None:intergenic 30.0%
TTTACTGACATCTAATTGTG+TGG - Chr5:19856381-19856400 MsG0580025513.01.T01:intron 30.0%
! ACATTTGTTACTATGGATTC+AGG - Chr5:19854532-19854551 MsG0580025513.01.T01:intron 30.0%
! ACCAAAGAATCACATCATTT+TGG - Chr5:19854727-19854746 MsG0580025513.01.T01:intron 30.0%
! ACCACTTACTCTTTTGATAT+AGG - Chr5:19858390-19858409 MsG0580025513.01.T01:intron 30.0%
! ATTTGTTTCTTATCATACGG+AGG - Chr5:19856639-19856658 MsG0580025513.01.T01:CDS 30.0%
! CAACTTTTGTGGAGATATAA+AGG - Chr5:19857300-19857319 MsG0580025513.01.T01:intron 30.0%
! CATGTACTGATATTTGGATA+TGG - Chr5:19859271-19859290 MsG0580025513.01.T01:CDS 30.0%
! TAATAGGCTAAATCCCTTTT+AGG + Chr5:19856012-19856031 None:intergenic 30.0%
! TATCTCATTCAACTTTTGTG+TGG - Chr5:19856351-19856370 MsG0580025513.01.T01:intron 30.0%
! TTATTGGTGCTTTGATATGT+CGG + Chr5:19857345-19857364 None:intergenic 30.0%
! TTTGCACCAATATGTTTTCT+CGG - Chr5:19857553-19857572 MsG0580025513.01.T01:intron 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + Chr5:19854782-19854801 None:intergenic 30.0%
!! CTGGTGATTTTGATAAGAAA+TGG + Chr5:19853854-19853873 None:intergenic 30.0%
!! GTTTAAAACAAAAGCACCAT+TGG + Chr5:19857629-19857648 None:intergenic 30.0%
!! TTCAAAATGAGTGTCACTTT+AGG - Chr5:19854783-19854802 MsG0580025513.01.T01:intron 30.0%
!! TTTTACTGGCTAACATGATT+TGG - Chr5:19855346-19855365 MsG0580025513.01.T01:intron 30.0%
!!! AGATGATGCTTTTTTTTTGG+TGG - Chr5:19856179-19856198 MsG0580025513.01.T01:intron 30.0%
!!! TCACTTATTTTTACGAGAAG+TGG + Chr5:19859118-19859137 None:intergenic 30.0%
!!! TGGTGCTTTTGTTTTAAACT+AGG - Chr5:19857630-19857649 MsG0580025513.01.T01:intron 30.0%
!!! TGGTTTTGTAAAGTTTTGAG+TGG - Chr5:19857228-19857247 MsG0580025513.01.T01:intron 30.0%
!!! TTTGTAAAGTTTTGAGTGGT+TGG - Chr5:19857232-19857251 MsG0580025513.01.T01:intron 30.0%
AAGGAGTTGCAATTCATAAG+GGG + Chr5:19855137-19855156 None:intergenic 35.0%
AATAGGGATACACACAATGA+CGG + Chr5:19858952-19858971 None:intergenic 35.0%
ACACCATTGTGAGATATGAT+TGG - Chr5:19856980-19856999 MsG0580025513.01.T01:intron 35.0%
ACTTGCGAAATGTTGCATTT+GGG - Chr5:19857594-19857613 MsG0580025513.01.T01:intron 35.0%
AGGATGCATGATTTCTTGTT+TGG - Chr5:19858769-19858788 MsG0580025513.01.T01:intron 35.0%
AGTAAGGGTAGAATTTGCAA+AGG - Chr5:19856426-19856445 MsG0580025513.01.T01:intron 35.0%
AGTTGAAGCATGGAGTTTAA+TGG + Chr5:19853880-19853899 None:intergenic 35.0%
ATATGTGACTAATACGGCTA+TGG - Chr5:19858539-19858558 MsG0580025513.01.T01:intron 35.0%
ATTACATAACGTGCTTCCTT+AGG + Chr5:19856490-19856509 None:intergenic 35.0%
CAAATTCTACCCTTACTATC+CGG + Chr5:19856423-19856442 None:intergenic 35.0%
CAAGCTAAGTGAAAATCAGA+AGG + Chr5:19857378-19857397 None:intergenic 35.0%
CAATTGAGGCTTATGGAAAA+GGG - Chr5:19858655-19858674 MsG0580025513.01.T01:intron 35.0%
CCCAGATGAAATACTTATGA+AGG - Chr5:19855216-19855235 MsG0580025513.01.T01:intron 35.0%
CTTCAGAACAAACAAACAAG+AGG + Chr5:19859005-19859024 None:intergenic 35.0%
CTTCCAATCATATCTCACAA+TGG + Chr5:19856986-19857005 None:intergenic 35.0%
GCCTATATCAAAAGAGTAAG+TGG + Chr5:19858394-19858413 None:intergenic 35.0%
GTAAGGGTAGAATTTGCAAA+GGG - Chr5:19856427-19856446 MsG0580025513.01.T01:intron 35.0%
GTGGATATTGTGAGAGAAAA+TGG + Chr5:19853925-19853944 None:intergenic 35.0%
GTGTGAGTAATAACCAATTG+AGG - Chr5:19858641-19858660 MsG0580025513.01.T01:intron 35.0%
TCATTGTGTGTATCCCTATT+TGG - Chr5:19858952-19858971 MsG0580025513.01.T01:intron 35.0%
TCTGTATACATGAGGTAATC+AGG + Chr5:19859337-19859356 None:intergenic 35.0%
TCTGTCTTCAACTGTATGAA+TGG - Chr5:19859027-19859046 MsG0580025513.01.T01:intron 35.0%
TGATCACCGAGAAAACATAT+TGG + Chr5:19857562-19857581 None:intergenic 35.0%
TGCATAAAATATGCAAGGTC+CGG + Chr5:19856222-19856241 None:intergenic 35.0%
TGGTGCATATGTGACTAATA+CGG - Chr5:19858533-19858552 MsG0580025513.01.T01:intron 35.0%
TTCAACTGTATGAATGGAAC+TGG - Chr5:19859033-19859052 MsG0580025513.01.T01:intron 35.0%
! AGGCTTGAATTTTGCAAACA+AGG - Chr5:19858410-19858429 MsG0580025513.01.T01:intron 35.0%
! ATATGTTTTCTCGGTGATCA+TGG - Chr5:19857562-19857581 MsG0580025513.01.T01:intron 35.0%
! GTATGTTTGTCTGTTCTGAA+TGG - Chr5:19854632-19854651 MsG0580025513.01.T01:intron 35.0%
! TAGACAAGAAATGAGAGTGT+TGG + Chr5:19855313-19855332 None:intergenic 35.0%
! TGTTAATTTGGTTGGGACAA+TGG - Chr5:19855856-19855875 MsG0580025513.01.T01:intron 35.0%
!! AAAAGCATCATCTCTATTCC+TGG + Chr5:19856172-19856191 None:intergenic 35.0%
!! AAGAAGCATCTGTGTATTCA+GGG - Chr5:19857887-19857906 MsG0580025513.01.T01:intron 35.0%
!! AAGCGACACTCATTTTGAAA+CGG - Chr5:19854982-19855001 MsG0580025513.01.T01:intron 35.0%
!! AGACAAGAAATGAGAGTGTT+GGG + Chr5:19855312-19855331 None:intergenic 35.0%
!! AGATTTTGGGTCAGAGTAAA+TGG - Chr5:19857500-19857519 MsG0580025513.01.T01:intron 35.0%
!! ATTTGGGTTGCAATTTCCAA+TGG - Chr5:19857610-19857629 MsG0580025513.01.T01:intron 35.0%
!! GTTTTGAGTGGTTGGATATA+TGG - Chr5:19857240-19857259 MsG0580025513.01.T01:intron 35.0%
!!! ATGGTTTTGGTTGAATCAGA+GGG + Chr5:19858194-19858213 None:intergenic 35.0%
!!! GCTTTTTTGACACTCAACTA+TGG - Chr5:19855371-19855390 MsG0580025513.01.T01:intron 35.0%
!!! TATGGTTTTGGTTGAATCAG+AGG + Chr5:19858195-19858214 None:intergenic 35.0%
!!! TCACATCATTTTGGAACTCT+TGG - Chr5:19854736-19854755 MsG0580025513.01.T01:intron 35.0%
!!! TGATGCTTTTTTTTTGGTGG+TGG - Chr5:19856182-19856201 MsG0580025513.01.T01:intron 35.0%
AAAGGGAAGTTATGTCACTC+TGG - Chr5:19856046-19856065 MsG0580025513.01.T01:intron 40.0%
AAAGTTGGAGAGGGTAAAGT+TGG - Chr5:19854927-19854946 MsG0580025513.01.T01:intron 40.0%
AAATACCGTCGATAGGAACA+AGG + Chr5:19858344-19858363 None:intergenic 40.0%
AAATATCAGGCCGGATAGTA+AGG - Chr5:19856410-19856429 MsG0580025513.01.T01:intron 40.0%
AAGGCAAGTTAAAGACAACG+AGG + Chr5:19854079-19854098 None:intergenic 40.0%
AAGGGATTGAAGTTGAAGCA+TGG + Chr5:19853890-19853909 None:intergenic 40.0%
AAGTGAAAATCAGAAGGTGG+TGG + Chr5:19857372-19857391 None:intergenic 40.0%
AATATCAGGCCGGATAGTAA+GGG - Chr5:19856411-19856430 MsG0580025513.01.T01:intron 40.0%
ACTTGGCTATTTGAGTGTCT+AGG - Chr5:19857193-19857212 MsG0580025513.01.T01:intron 40.0%
AGCTTCAATAACACACTTGG+GGG + Chr5:19858929-19858948 None:intergenic 40.0%
CAAAGCACATAAGGGAAAGA+AGG - Chr5:19858235-19858254 MsG0580025513.01.T01:intron 40.0%
CACACATGTATGTATTTCGG+GGG - Chr5:19855540-19855559 MsG0580025513.01.T01:intron 40.0%
CACTTGCGAAATGTTGCATT+TGG - Chr5:19857593-19857612 MsG0580025513.01.T01:intron 40.0%
CATAAAATATGCAAGGTCCG+GGG + Chr5:19856220-19856239 None:intergenic 40.0%
CATAGCTTCTTAGGGATACA+GGG - Chr5:19857911-19857930 MsG0580025513.01.T01:intron 40.0%
CATGGCGAGAAAAAATTGGA+TGG + Chr5:19856917-19856936 None:intergenic 40.0%
CCAATTGAGGCTTATGGAAA+AGG - Chr5:19858654-19858673 MsG0580025513.01.T01:intron 40.0%
CCACACATGTATGTATTTCG+GGG - Chr5:19855539-19855558 MsG0580025513.01.T01:intron 40.0%
CCCACACATGTATGTATTTC+GGG - Chr5:19855538-19855557 MsG0580025513.01.T01:intron 40.0%
CCCCACACATGTATGTATTT+CGG - Chr5:19855537-19855556 MsG0580025513.01.T01:intron 40.0%
CCCGAAATACATACATGTGT+GGG + Chr5:19855541-19855560 None:intergenic 40.0%
CCGAAATACATACATGTGTG+GGG + Chr5:19855540-19855559 None:intergenic 40.0%
CGAAATACATACATGTGTGG+GGG + Chr5:19855539-19855558 None:intergenic 40.0%
CTCTAGCAAAACACTTCCAA+CGG - Chr5:19856133-19856152 MsG0580025513.01.T01:intron 40.0%
GACATAGACTGTGCAATGAA+AGG - Chr5:19854687-19854706 MsG0580025513.01.T01:intron 40.0%
GACATCTAATTGTGTGGTTC+AGG - Chr5:19856387-19856406 MsG0580025513.01.T01:intron 40.0%
GAGCTTCAATAACACACTTG+GGG + Chr5:19858930-19858949 None:intergenic 40.0%
GATGCTTCTTCTAACTCCTT+CGG + Chr5:19857877-19857896 None:intergenic 40.0%
GCATAAAATATGCAAGGTCC+GGG + Chr5:19856221-19856240 None:intergenic 40.0%
GCATGGAGTTTAATGGAATC+TGG + Chr5:19853873-19853892 None:intergenic 40.0%
GCTAAGTGAAAATCAGAAGG+TGG + Chr5:19857375-19857394 None:intergenic 40.0%
GCTACATGGCGAGAAAAAAT+TGG + Chr5:19856921-19856940 None:intergenic 40.0%
GGAGCTTCAATAACACACTT+GGG + Chr5:19858931-19858950 None:intergenic 40.0%
GTAAAGAGCAAAGATGGGAA+GGG - Chr5:19854499-19854518 MsG0580025513.01.T01:intron 40.0%
GTATTATGTAGTACTCCCTC+CGG - Chr5:19854335-19854354 MsG0580025513.01.T01:intron 40.0%
TAAAATTGTTGAGGTGACCG+CGG + Chr5:19857940-19857959 None:intergenic 40.0%
TACCCTGAGAAATAGCTACA+TGG + Chr5:19856935-19856954 None:intergenic 40.0%
TCTGCAATATGCCAGTGAAA+GGG - Chr5:19858609-19858628 MsG0580025513.01.T01:intron 40.0%
TCTTTACAATCTACTCCCTC+CGG + Chr5:19854486-19854505 None:intergenic 40.0%
TCTTTCTAAGCCGGATATCA+AGG - Chr5:19854103-19854122 MsG0580025513.01.T01:CDS 40.0%
TGGAACTGTAATTGACGTTG+AGG - Chr5:19854142-19854161 MsG0580025513.01.T01:intron 40.0%
TGGATGCATCATAAGGAGTT+GGG - Chr5:19858582-19858601 MsG0580025513.01.T01:intron 40.0%
TGTAAAGAGCAAAGATGGGA+AGG - Chr5:19854498-19854517 MsG0580025513.01.T01:intron 40.0%
TGTCTAGGTCATAGCTGTAT+TGG - Chr5:19857208-19857227 MsG0580025513.01.T01:intron 40.0%
TGTGAGAGAAAAGTTGGAGA+GGG - Chr5:19854918-19854937 MsG0580025513.01.T01:intron 40.0%
TGTGTGGTTCAGGAAATATC+AGG - Chr5:19856397-19856416 MsG0580025513.01.T01:intron 40.0%
TGTTACTATGGATTCAGGAG+AGG - Chr5:19854537-19854556 MsG0580025513.01.T01:intron 40.0%
TGTTTCTTATCATACGGAGG+AGG - Chr5:19856642-19856661 MsG0580025513.01.T01:CDS 40.0%
TTCAACTTCGGACACTAGTT+AGG + Chr5:19856300-19856319 None:intergenic 40.0%
TTGGATGGCCAAACTTTACT+TGG - Chr5:19857176-19857195 MsG0580025513.01.T01:intron 40.0%
TTTGACACTCAACTATGGCT+TGG - Chr5:19855376-19855395 MsG0580025513.01.T01:intron 40.0%
TTTGGCATAGCATGTTCAAC+TGG + Chr5:19855831-19855850 None:intergenic 40.0%
! CCTTTTCCATAAGCCTCAAT+TGG + Chr5:19858657-19858676 None:intergenic 40.0%
! GATGCAGCAGCATTTTCTAA+AGG + Chr5:19857695-19857714 None:intergenic 40.0%
! TGCTTATATTTAGGACCGGA+GGG - Chr5:19854468-19854487 MsG0580025513.01.T01:intron 40.0%
! TGCTTATATTTAGGACCGGA+GGG + Chr5:19854487-19854468 None:intergenic 40.0%
! TGTTTGTCTGTTCTGAATGG+TGG - Chr5:19854635-19854654 MsG0580025513.01.T01:intron 40.0%
! TTGCTTATATTTAGGACCGG+AGG - Chr5:19854467-19854486 MsG0580025513.01.T01:intron 40.0%
! TTGCTTATATTTAGGACCGG+AGG + Chr5:19854486-19854467 None:intergenic 40.0%
!! AGAAGCATCTGTGTATTCAG+GGG - Chr5:19857888-19857907 MsG0580025513.01.T01:intron 40.0%
!! ATGAGTGTCACTTTAGGCTT+TGG - Chr5:19854789-19854808 MsG0580025513.01.T01:intron 40.0%
!! GAAGAAGCATCTGTGTATTC+AGG - Chr5:19857886-19857905 MsG0580025513.01.T01:intron 40.0%
!! GAGTGTTTTGGATTTGGAAG+AGG + Chr5:19853967-19853986 None:intergenic 40.0%
!! GCTATTTCTCAGGGTAGTTT+AGG - Chr5:19856939-19856958 MsG0580025513.01.T01:intron 40.0%
!! GTAGCAGAGTGTTTTGGATT+TGG + Chr5:19853973-19853992 None:intergenic 40.0%
!! GTATTTGACGCGGTTTTGAT+GGG - Chr5:19858358-19858377 MsG0580025513.01.T01:intron 40.0%
!! GTTCTTTGAGGGTTTTGCTT+GGG - Chr5:19858280-19858299 MsG0580025513.01.T01:intron 40.0%
!! TAAAGCGTAGCAGAGTGTTT+TGG + Chr5:19853979-19853998 None:intergenic 40.0%
!! TCGTTGTCTTTAACTTGCCT+TGG - Chr5:19854078-19854097 MsG0580025513.01.T01:CDS 40.0%
!! TGTTCTTTGAGGGTTTTGCT+TGG - Chr5:19858279-19858298 MsG0580025513.01.T01:intron 40.0%
!!! GACACTCATTTTGAAACGGA+AGG + Chr5:19855041-19855022 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - Chr5:19855022-19855041 MsG0580025513.01.T01:intron 40.0%
AAAGGGTGGGAACAAAGGTT+TGG - Chr5:19858672-19858691 MsG0580025513.01.T01:CDS 45.0%
AAGGATCTCTTCGCTCAATG+TGG - Chr5:19854122-19854141 MsG0580025513.01.T01:CDS 45.0%
ACAATGCAGCGTATACGCAA+TGG + Chr5:19858065-19858084 None:intergenic 45.0%
ACACGCAAAATGAGTTTCCC+TGG + Chr5:19857980-19857999 None:intergenic 45.0%
ACCAATGCTTTCCCTTTCAC+TGG + Chr5:19858623-19858642 None:intergenic 45.0%
ACTCTGCTACGCTTTACAAG+AGG - Chr5:19853983-19854002 MsG0580025513.01.T01:exon 45.0%
ACTTCTTCACTTCCAGCTTC+TGG + Chr5:19859199-19859218 None:intergenic 45.0%
AGACGGTCAATGACACATGT+TGG + Chr5:19858095-19858114 None:intergenic 45.0%
AGAGGAGAGGCAGATTCAAA+GGG + Chr5:19858145-19858164 None:intergenic 45.0%
AGCAAAGATGGGAAGGGAAA+AGG - Chr5:19854505-19854524 MsG0580025513.01.T01:intron 45.0%
AGCCTGAATTTCATGTCCGA+AGG - Chr5:19857858-19857877 MsG0580025513.01.T01:intron 45.0%
AGGCAGATTCAAAGGGAGAA+CGG + Chr5:19858138-19858157 None:intergenic 45.0%
AGTAACTCCTGCAAAGGGAT+AGG + Chr5:19859088-19859107 None:intergenic 45.0%
ATAACGTGCTTCCTTAGGAG+TGG + Chr5:19856485-19856504 None:intergenic 45.0%
ATCCCTTTGCAGGAGTTACT+TGG - Chr5:19859088-19859107 MsG0580025513.01.T01:CDS 45.0%
ATGAAGCACGAAGACAACTG+TGG + Chr5:19855722-19855741 None:intergenic 45.0%
ATGCATCATAAGGAGTTGGG+AGG - Chr5:19858585-19858604 MsG0580025513.01.T01:intron 45.0%
ATGGAAAAGGGTGGGAACAA+AGG - Chr5:19858667-19858686 MsG0580025513.01.T01:CDS 45.0%
CAAAACACCAGTTTCAGCCA+GGG - Chr5:19856576-19856595 MsG0580025513.01.T01:CDS 45.0%
CAATGCAGCGTATACGCAAT+GGG + Chr5:19858064-19858083 None:intergenic 45.0%
CACGCAAAATGAGTTTCCCT+GGG + Chr5:19857979-19857998 None:intergenic 45.0%
CATTTCTGCTTTGCAAGGGA+AGG - Chr5:19856678-19856697 MsG0580025513.01.T01:CDS 45.0%
CCCCGAAATACATACATGTG+TGG + Chr5:19855542-19855561 None:intergenic 45.0%
CGGAGCTTCAATAACACACT+TGG + Chr5:19858932-19858951 None:intergenic 45.0%
CTCCTTCGGACATGAAATTC+AGG + Chr5:19857863-19857882 None:intergenic 45.0%
CTTCCCTTGCAAAGCAGAAA+TGG + Chr5:19856680-19856699 None:intergenic 45.0%
GAGAAGAAACCTCTACAAGC+TGG - Chr5:19859304-19859323 MsG0580025513.01.T01:CDS 45.0%
GAGACTCTAACACCTCAAGA+AGG + Chr5:19855253-19855272 None:intergenic 45.0%
GATGACACTTCTCCTTCTTG+AGG - Chr5:19855238-19855257 MsG0580025513.01.T01:intron 45.0%
GCATAGCTTCTTAGGGATAC+AGG - Chr5:19857910-19857929 MsG0580025513.01.T01:intron 45.0%
GCGAAGAGATCCTTGATATC+CGG + Chr5:19854116-19854135 None:intergenic 45.0%
GGCGTCAATTGAGATAGAAG+TGG - Chr5:19857727-19857746 MsG0580025513.01.T01:intron 45.0%
GGCTATGGTGGTAAGAATGT+GGG - Chr5:19858554-19858573 MsG0580025513.01.T01:intron 45.0%
GGTAAAACTCCAGCTTGTAG+AGG + Chr5:19859316-19859335 None:intergenic 45.0%
GTCCAAGTAACTCCTGCAAA+GGG + Chr5:19859093-19859112 None:intergenic 45.0%
GTCTGCAATATGCCAGTGAA+AGG - Chr5:19858608-19858627 MsG0580025513.01.T01:intron 45.0%
GTGGATGCATCATAAGGAGT+TGG - Chr5:19858581-19858600 MsG0580025513.01.T01:intron 45.0%
GTGTGAGAGAAAAGTTGGAG+AGG - Chr5:19854917-19854936 MsG0580025513.01.T01:intron 45.0%
GTTTGTGCTAGTGTTGTGTC+TGG - Chr5:19855693-19855712 MsG0580025513.01.T01:intron 45.0%
TAACGTGCTTCCTTAGGAGT+GGG + Chr5:19856484-19856503 None:intergenic 45.0%
TACTATGGATTCAGGAGAGG+AGG - Chr5:19854540-19854559 MsG0580025513.01.T01:intron 45.0%
TAGATCTTGCTTTCCACGCA+AGG + Chr5:19856525-19856544 None:intergenic 45.0%
TCAAAACACCAGTTTCAGCC+AGG - Chr5:19856575-19856594 MsG0580025513.01.T01:CDS 45.0%
TCCTGCAAAGGGATAGGTAA+CGG + Chr5:19859082-19859101 None:intergenic 45.0%
TGAGGCTTATGGAAAAGGGT+GGG - Chr5:19858659-19858678 MsG0580025513.01.T01:CDS 45.0%
TGCATCATAAGGAGTTGGGA+GGG - Chr5:19858586-19858605 MsG0580025513.01.T01:intron 45.0%
TGGAGCTTAGTTTAGTCCGT+TGG + Chr5:19856152-19856171 None:intergenic 45.0%
TGGTTCAGGAAATATCAGGC+CGG - Chr5:19856401-19856420 MsG0580025513.01.T01:intron 45.0%
TGTGACTAATACGGCTATGG+TGG - Chr5:19858542-19858561 MsG0580025513.01.T01:intron 45.0%
TTGAGGCTTATGGAAAAGGG+TGG - Chr5:19858658-19858677 MsG0580025513.01.T01:CDS 45.0%
TTGTCTTTCAAACCCCTGGT+GGG - Chr5:19856599-19856618 MsG0580025513.01.T01:CDS 45.0%
! ATTCAGGGGCATAGCTTCTT+AGG - Chr5:19857902-19857921 MsG0580025513.01.T01:intron 45.0%
! CTGCCATTTCTGCTTTGCAA+GGG - Chr5:19856674-19856693 MsG0580025513.01.T01:CDS 45.0%
! GAAGTTATGTCACTCTGGAG+TGG - Chr5:19856051-19856070 MsG0580025513.01.T01:intron 45.0%
! TGAGCTTAGCTCAGTTGGTA+TGG + Chr5:19856249-19856268 None:intergenic 45.0%
! TTCAGGGGCATAGCTTCTTA+GGG - Chr5:19857903-19857922 MsG0580025513.01.T01:intron 45.0%
!! AACGGACTAAACTAAGCTCC+AGG - Chr5:19856151-19856170 MsG0580025513.01.T01:intron 45.0%
!! ACTCAACTATGGCTTGGTAC+AGG - Chr5:19855382-19855401 MsG0580025513.01.T01:intron 45.0%
!! ACTCTGGAGTGGCATGTAAT+AGG - Chr5:19856062-19856081 MsG0580025513.01.T01:intron 45.0%
!! AGAAGGTGGTGGACGTTTAT+TGG + Chr5:19857361-19857380 None:intergenic 45.0%
!! CGCCATGTAGCTATTTCTCA+GGG - Chr5:19856930-19856949 MsG0580025513.01.T01:intron 45.0%
!! GGTATTTGACGCGGTTTTGA+TGG - Chr5:19858357-19858376 MsG0580025513.01.T01:intron 45.0%
!! TCGCCATGTAGCTATTTCTC+AGG - Chr5:19856929-19856948 MsG0580025513.01.T01:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - Chr5:19855021-19855040 MsG0580025513.01.T01:intron 45.0%
!!! TTTTTTTTTGGTGGTGGCCG+AGG - Chr5:19856188-19856207 MsG0580025513.01.T01:intron 45.0%
!! AAAAATGAATATATAAATAT+TGG - Chr5:19856322-19856341 MsG0580025513.01.T01:intron 5.0%
!! ATTAAAAAAAAATAACTAAA+AGG - Chr5:19856028-19856047 MsG0580025513.01.T01:intron 5.0%
!! TTAAAAAAAAATAACTAAAA+GGG - Chr5:19856029-19856048 MsG0580025513.01.T01:intron 5.0%
!!! TTTAGTTATTTTTTTTTAAT+AGG + Chr5:19856028-19856047 None:intergenic 5.0%
!!! TTTATTTTTATTTTACTTTT+TGG - Chr5:19854608-19854627 MsG0580025513.01.T01:intron 5.0%
AAACGCAGTGGGTAGATGGA+GGG + Chr5:19858018-19858037 None:intergenic 50.0%
AAGACAACCCTGGCTGAAAC+TGG + Chr5:19856586-19856605 None:intergenic 50.0%
ACCCTTATGAATCCCTCCCT+GGG - Chr5:19855183-19855202 MsG0580025513.01.T01:intron 50.0%
AGCTTCTTAGGGATACAGGG+TGG - Chr5:19857914-19857933 MsG0580025513.01.T01:intron 50.0%
AGGGATTCATAAGGGTGGCT+TGG + Chr5:19855179-19855198 None:intergenic 50.0%
AGGGGTTTGAAAGACAACCC+TGG + Chr5:19856596-19856615 None:intergenic 50.0%
AGGGTTGTCTTTCAAACCCC+TGG - Chr5:19856595-19856614 MsG0580025513.01.T01:CDS 50.0%
CAGAGGAGAGGCAGATTCAA+AGG + Chr5:19858146-19858165 None:intergenic 50.0%
CCTATCGACGGTATTTGACG+CGG - Chr5:19858348-19858367 MsG0580025513.01.T01:intron 50.0%
CGGCTATGGTGGTAAGAATG+TGG - Chr5:19858553-19858572 MsG0580025513.01.T01:intron 50.0%
CGTCCAAGTAACTCCTGCAA+AGG + Chr5:19859094-19859113 None:intergenic 50.0%
GCCTTGGTCTCTTTCTAAGC+CGG - Chr5:19854094-19854113 MsG0580025513.01.T01:CDS 50.0%
GTATACGCAATGGGACAGAG+TGG + Chr5:19858055-19858074 None:intergenic 50.0%
GTTGTCTTTCAAACCCCTGG+TGG - Chr5:19856598-19856617 MsG0580025513.01.T01:CDS 50.0%
TCCCAGGGAGGGATTCATAA+GGG + Chr5:19855187-19855206 None:intergenic 50.0%
TCCGGCTTAGAAAGAGACCA+AGG + Chr5:19854098-19854117 None:intergenic 50.0%
TCCGTTACCTATCCCTTTGC+AGG - Chr5:19859078-19859097 MsG0580025513.01.T01:CDS 50.0%
TCGGGGGAATCACAAATCAG+AGG - Chr5:19855556-19855575 MsG0580025513.01.T01:intron 50.0%
TCTATGCATCCAACCTTGCG+TGG - Chr5:19856509-19856528 MsG0580025513.01.T01:intron 50.0%
TCTTGCTTTCCACGCAAGGT+TGG + Chr5:19856521-19856540 None:intergenic 50.0%
TGCTGCATCACAATGACGCT+AGG - Chr5:19857706-19857725 MsG0580025513.01.T01:intron 50.0%
TGGTAAGAATGTGGGCTTGG+TGG - Chr5:19858562-19858581 MsG0580025513.01.T01:intron 50.0%
TGGTGGTAAGAATGTGGGCT+TGG - Chr5:19858559-19858578 MsG0580025513.01.T01:intron 50.0%
! GATTCATAAGGGTGGCTTGG+TGG + Chr5:19855176-19855195 None:intergenic 50.0%
! GCCAGTGAAAGGGAAAGCAT+TGG - Chr5:19858619-19858638 MsG0580025513.01.T01:intron 50.0%
! GCTGCCATTTCTGCTTTGCA+AGG - Chr5:19856673-19856692 MsG0580025513.01.T01:CDS 50.0%
! TAGATGGAGGGTGCAGTACT+GGG + Chr5:19858006-19858025 None:intergenic 50.0%
! TGTTCTAACTTGCGCTGCAG+TGG - Chr5:19858702-19858721 MsG0580025513.01.T01:CDS 50.0%
!! GGCTTGGTGGATGCATCATA+AGG - Chr5:19858575-19858594 MsG0580025513.01.T01:intron 50.0%
ACCCAGCAGATTTCCCACCA+GGG + Chr5:19856615-19856634 None:intergenic 55.0%
ACCGTCGATAGGAACAAGGC+AGG + Chr5:19858340-19858359 None:intergenic 55.0%
ACGCAAACGCAGTGGGTAGA+TGG + Chr5:19858022-19858041 None:intergenic 55.0%
ATCTGGGTTACACACCTCCC+AGG + Chr5:19855203-19855222 None:intergenic 55.0%
CAAACGCAGTGGGTAGATGG+AGG + Chr5:19858019-19858038 None:intergenic 55.0%
CACCCTTATGAATCCCTCCC+TGG - Chr5:19855182-19855201 MsG0580025513.01.T01:intron 55.0%
CAGGGAGGGATTCATAAGGG+TGG + Chr5:19855184-19855203 None:intergenic 55.0%
CCAACTGAGCTAAGCTCACG+AGG - Chr5:19856251-19856270 MsG0580025513.01.T01:intron 55.0%
CCGCGTCAAATACCGTCGAT+AGG + Chr5:19858351-19858370 None:intergenic 55.0%
CCTCGTGAGCTTAGCTCAGT+TGG + Chr5:19856254-19856273 None:intergenic 55.0%
CTCCCAGGGAGGGATTCATA+AGG + Chr5:19855188-19855207 None:intergenic 55.0%
CTTATGAATCCCTCCCTGGG+AGG - Chr5:19855186-19855205 MsG0580025513.01.T01:intron 55.0%
GGTGGGAAATCTGCTGGGTA+TGG - Chr5:19856616-19856635 MsG0580025513.01.T01:CDS 55.0%
TACCCAGCAGATTTCCCACC+AGG + Chr5:19856616-19856635 None:intergenic 55.0%
TCTGGGTTACACACCTCCCA+GGG + Chr5:19855202-19855221 None:intergenic 55.0%
! ACATACATGTGTGGGGGCAC+AGG + Chr5:19855533-19855552 None:intergenic 55.0%
! AGATGGAGGGTGCAGTACTG+GGG + Chr5:19858005-19858024 None:intergenic 55.0%
! CATACATGTGTGGGGGCACA+GGG + Chr5:19855532-19855551 None:intergenic 55.0%
! GCCTGCCTTGTTCCTATCGA+CGG - Chr5:19858336-19858355 MsG0580025513.01.T01:intron 55.0%
! GTAGATGGAGGGTGCAGTAC+TGG + Chr5:19858007-19858026 None:intergenic 55.0%
! TCTAACTTGCGCTGCAGTGG+TGG - Chr5:19858705-19858724 MsG0580025513.01.T01:CDS 55.0%
AAGGTCCGGGGTTCGAACCT+CGG + Chr5:19856208-19856227 None:intergenic 60.0%
ACACAGCACACGCAGAGGAG+AGG + Chr5:19858158-19858177 None:intergenic 60.0%
ACCCCTGGTGGGAAATCTGC+TGG - Chr5:19856610-19856629 MsG0580025513.01.T01:CDS 60.0%
ACGACAGGACGCAAACGCAG+TGG + Chr5:19858030-19858049 None:intergenic 60.0%
ATCGCGCGCACAGAGCTAGA+CGG + Chr5:19858112-19858131 None:intergenic 60.0%
CCCAGCAGATTTCCCACCAG+GGG + Chr5:19856614-19856633 None:intergenic 60.0%
CCCCTGGTGGGAAATCTGCT+GGG - Chr5:19856611-19856630 MsG0580025513.01.T01:CDS 60.0%
CGACAGGACGCAAACGCAGT+GGG + Chr5:19858029-19858048 None:intergenic 60.0%
GAACCACACAGCACACGCAG+AGG + Chr5:19858163-19858182 None:intergenic 60.0%
GACGACACGCAACCAGAAGC+TGG - Chr5:19859184-19859203 MsG0580025513.01.T01:CDS 60.0%
GCTTCCTTAGGAGTGGGAGC+TGG + Chr5:19856478-19856497 None:intergenic 60.0%
GGATTCAGGAGAGGAGGCTC+AGG - Chr5:19854546-19854565 MsG0580025513.01.T01:intron 60.0%
GGTTACACACCTCCCAGGGA+GGG + Chr5:19855198-19855217 None:intergenic 60.0%
TCCTCCAGCTCCCACTCCTA+AGG - Chr5:19856471-19856490 MsG0580025513.01.T01:intron 60.0%
TCCTTAGGAGTGGGAGCTGG+AGG + Chr5:19856475-19856494 None:intergenic 60.0%
TCTCCTCTGCGTGTGCTGTG+TGG - Chr5:19858157-19858176 MsG0580025513.01.T01:intron 60.0%
TGGGACAGAGTGGTCACGAC+AGG + Chr5:19858045-19858064 None:intergenic 60.0%
TTAGGAGTGGGAGCTGGAGG+AGG + Chr5:19856472-19856491 None:intergenic 60.0%
TTAGGGATACAGGGTGGCCG+CGG - Chr5:19857920-19857939 MsG0580025513.01.T01:intron 60.0%
GGGTTACACACCTCCCAGGG+AGG + Chr5:19855199-19855218 None:intergenic 65.0%
GGAGCTGGAGGAGGTGGAGG+AGG + Chr5:19856463-19856482 None:intergenic 70.0%
GGAGTGGGAGCTGGAGGAGG+TGG + Chr5:19856469-19856488 None:intergenic 70.0%
GGTGGCCGAGGTTCGAACCC+CGG - Chr5:19856200-19856219 MsG0580025513.01.T01:intron 70.0%
GTGGGAGCTGGAGGAGGTGG+AGG + Chr5:19856466-19856485 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
Chr5 gene 19853789 19859463 19853789 ID=MsG0580025513.01;Name=MsG0580025513.01
Chr5 mRNA 19853789 19859463 19853789 ID=MsG0580025513.01.T01;Parent=MsG0580025513.01;Name=MsG0580025513.01.T01;_AED=0.49;_eAED=0.50;_QI=0|0.66|0.75|1|0.66|0.75|4|205|315
Chr5 exon 19853789 19854152 19853789 ID=MsG0580025513.01.T01:exon:8351;Parent=MsG0580025513.01.T01
Chr5 exon 19856553 19856843 19856553 ID=MsG0580025513.01.T01:exon:8350;Parent=MsG0580025513.01.T01
Chr5 exon 19858658 19858756 19858658 ID=MsG0580025513.01.T01:exon:8349;Parent=MsG0580025513.01.T01
Chr5 exon 19859065 19859463 19859065 ID=MsG0580025513.01.T01:exon:8348;Parent=MsG0580025513.01.T01
Chr5 CDS 19859065 19859463 19859065 ID=MsG0580025513.01.T01:cds;Parent=MsG0580025513.01.T01
Chr5 CDS 19858658 19858756 19858658 ID=MsG0580025513.01.T01:cds;Parent=MsG0580025513.01.T01
Chr5 CDS 19856553 19856843 19856553 ID=MsG0580025513.01.T01:cds;Parent=MsG0580025513.01.T01
Chr5 CDS 19853994 19854152 19853994 ID=MsG0580025513.01.T01:cds;Parent=MsG0580025513.01.T01
Chr5 three_prime_UTR 19853789 19853993 19853789 ID=MsG0580025513.01.T01:three_prime_utr;Parent=MsG0580025513.01.T01
Gene Sequence

>MsG0580025513.01.T01

ATGGCAACGTTAGAATCAACCATAACTGTATTCACACATCAACGTTTTTCAAATAATAACTACCATTTCTTATCAAAATCACCAGATTCCATTAAACTCCATGCTTCAACTTCAATCCCTTCTTCTTCTTTTTCCATTTTCTCTCACAATATCCACAAACTTCACTTTTCTTCTTCCTCTTCCAAATCCAAAACACTCTGCTACGCTTTACAAGAGGTAACAGAAGCAGCAACAACAACTGAAGAAGATGAAGCAAAAACAGAGACATTGAACATCGTTAAGAAGAACCTCGTTGTCTTTAACTTGCCTTGGTCTCTTTCTAAGCCGGATATCAAGGATCTCTTCGCTCAATGTGGAACTGTAATTGACGTTGAGGTTGTTTCAAAATCTTTGTGTCATATTGTAAAGAGCAAAGATGGGAAGGGAAAAGGTTATACATTTGTTACTATGGATTCAGGAGAGGAGGCTCAGGCTGCTGTCGATAAATTTAATGCTGCTGAAATATCAGGCCGGATAGTAAGGGTAGAATTTGCAAAGGGATTTAAGAAACCTCCTCCACCTCCTCCAGCTCCCACTCCTAAGGAAGCACGTTATGTAATCTATGCATCCAACCTTGCGTGGAAAGCAAGATCTACACATCTCAGAGACATCTTCACTGAGAATTTCAAAACACCAGTTTCAGCCAGGGTTGTCTTTCAAACCCCTGGTGGGAAATCTGCTGGGTATGGATTTGTTTCTTATCATACGGAGGAGGAAGCAGAAGCTGCCATTTCTGCTTTGCAAGGGAAGGAGTTACTTGGACGACCACTTCTCGTAAAAATAAGTGAAAAAAAAGTTAAAGAAGCTGGAAGTAAAGTAGTTGAAGAGAAAGTTGACGACACGCAACCAGAAGCTGGAAGTGAAGAAGTTGAAGAGAAAGTTGATGACGCTCAACCAGAAGAGTCATAA

Protein sequence

>MsG0580025513.01.T01

MATLESTITVFTHQRFSNNNYHFLSKSPDSIKLHASTSIPSSSFSIFSHNIHKLHFSSSSSKSKTLCYALQEVTEAATTTEEDEAKTETLNIVKKNLVVFNLPWSLSKPDIKDLFAQCGTVIDVEVVSKSLCHIVKSKDGKGKGYTFVTMDSGEEAQAAVDKFNAAEISGRIVRVEFAKGFKKPPPPPPAPTPKEARYVIYASNLAWKARSTHLRDIFTENFKTPVSARVVFQTPGGKSAGYGFVSYHTEEEAEAAISALQGKELLGRPLLVKISEKKVKEAGSKVVEEKVDDTQPEAGSEEVEEKVDDAQPEES*