AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar ZhongmuNo.1 / MsG0480022622.01


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022622.01.T01 MTR_4g093620 94.724 398 16 2 1 393 1 398 0.0 754
MsG0480022622.01.T01 MTR_7g066120 41.646 413 204 12 1 380 1 409 2.19e-92 283
MsG0480022622.01.T01 MTR_2g008030 42.122 311 155 7 82 378 32 331 5.35e-75 236
MsG0480022622.01.T01 MTR_6g035305 40.909 308 165 6 82 379 32 332 2.51e-73 232
MsG0480022622.01.T01 MTR_0776s0010 37.742 310 174 6 80 375 307 611 4.13e-56 199
MsG0480022622.01.T01 MTR_3g070100 26.148 283 170 12 119 386 120 378 1.54e-11 65.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MsG0480022622.01.T01 AT5G64380 76.667 360 73 3 40 393 50 404 0.0 562
MsG0480022622.01.T01 AT3G54050 46.729 321 151 6 79 380 96 415 1.19e-91 282
MsG0480022622.01.T01 AT3G54050 46.729 321 151 6 79 380 96 415 1.19e-91 282
MsG0480022622.01.T01 AT1G43670 41.956 317 167 7 82 388 32 341 6.88e-79 246
MsG0480022622.01.T01 AT3G55800 27.273 286 169 14 119 389 127 388 1.81e-14 74.7

Find 95 sgRNAs with CRISPR-Local

Find 226 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTCTGCATTACCTTTGGCTC+TGG 0.272844 4:-74799994 MsG0480022622.01.T01:CDS
TCCCTATCAGAACCACTATT+TGG 0.303466 4:+74801540 None:intergenic
AGTCTTTGGTGCAGTTTAAC+TGG 0.327999 4:+74799016 None:intergenic
ATTCACTCCAAAGTGGAAAT+AGG 0.331263 4:-74800059 MsG0480022622.01.T01:CDS
CTCCATCGAACTTTGTTGTA+TGG 0.346740 4:-74799163 MsG0480022622.01.T01:CDS
TACCTTGCAGAGTACTTCTT+AGG 0.348324 4:+74799208 None:intergenic
ATATATTTCCTTAAGCCTTC+AGG 0.350818 4:+74799262 None:intergenic
GTAAAACCACTATCAGTCTT+AGG 0.354058 4:-74801750 MsG0480022622.01.T01:CDS
GTAGGTAAAGGAGGTGGAAT+TGG 0.362077 4:-74801663 MsG0480022622.01.T01:CDS
GGTTGGAAAGTTTGAAGCTT+TGG 0.362731 4:+74801822 None:intergenic
TTGATTGGCCTGAAGGCTTA+AGG 0.371460 4:-74799270 MsG0480022622.01.T01:CDS
CTTGTTACTGAAGCCATTGT+TGG 0.385235 4:+74801774 None:intergenic
AATTGGTGTGAATGATGATT+TGG 0.387215 4:-74801646 MsG0480022622.01.T01:CDS
TTCACTCTTGACCGTTCAAC+AGG 0.394843 4:-74799961 MsG0480022622.01.T01:CDS
ATGGAAGAGTTGGAAAGTTA+TGG 0.406247 4:-74798965 MsG0480022622.01.T01:CDS
ACCATTGATATGCCAAATAG+TGG 0.413324 4:-74801552 MsG0480022622.01.T01:CDS
CTATCAGCCTATTTCCACTT+TGG 0.418294 4:+74800052 None:intergenic
AAAAGTAAATCCTGGTTATG+AGG 0.419122 4:-74798930 MsG0480022622.01.T01:CDS
GGATCTGTCACGACCACATA+TGG 0.420264 4:+74800195 None:intergenic
GAAGGTGATGAGTTGATAGA+AGG 0.422120 4:+74801848 None:intergenic
GATATAATATCAAGAGGCTT+TGG 0.431354 4:+74801513 None:intergenic
GGAAATAGGCTGATAGCTTC+TGG 0.433737 4:-74800045 MsG0480022622.01.T01:CDS
TCCATCGAACTTTGTTGTAT+GGG 0.439545 4:-74799162 MsG0480022622.01.T01:CDS
TGCCAAATAGTGGTTCTGAT+AGG 0.439936 4:-74801542 MsG0480022622.01.T01:CDS
AAAGCCTCTTGATATTATAT+CGG 0.440217 4:-74801511 MsG0480022622.01.T01:intron
ACTATACTCTGCATTACCTT+TGG 0.441406 4:-74800000 MsG0480022622.01.T01:CDS
AAATATATTAACACAAATGA+TGG 0.448892 4:+74798806 None:intergenic
AACATAGTTACAAATAAGTT+AGG 0.449299 4:+74798861 None:intergenic
TTTGGAAGACATGGAAGAGT+TGG 0.453917 4:-74798975 MsG0480022622.01.T01:CDS
CCATTGTTGGAGTGAAGAAA+AGG 0.457793 4:+74801787 None:intergenic
ATCTGGAAAAGTTGCTGTCA+TGG 0.460073 4:-74800262 MsG0480022622.01.T01:CDS
ATTAACACAAATGATGGATA+AGG 0.461953 4:+74798812 None:intergenic
TCAACAGTAGCAAGTGATGA+TGG 0.462555 4:-74801708 MsG0480022622.01.T01:CDS
CCATCGAACTTTGTTGTATG+GGG 0.479077 4:-74799161 MsG0480022622.01.T01:CDS
ATTGATGCATCCATACCAAC+TGG 0.487257 4:-74800153 MsG0480022622.01.T01:CDS
CTTCATAAACAAGACGAAGA+TGG 0.490062 4:+74799116 None:intergenic
TCTGCATTACCTTTGGCTCT+GGG 0.492545 4:-74799993 MsG0480022622.01.T01:CDS
GAAAACATTCTGATGAAACT+TGG 0.497865 4:-74801911 MsG0480022622.01.T01:five_prime_UTR
GAAAATTGTACCAGTTGGTA+TGG 0.498000 4:+74800143 None:intergenic
GCCAAATAGTGGTTCTGATA+GGG 0.510565 4:-74801541 MsG0480022622.01.T01:CDS
GTGGAGCAAGCTGGTGGGAG+AGG 0.519722 4:-74799073 MsG0480022622.01.T01:CDS
AGTTTGAAGCTTTGGTCGGA+AGG 0.522108 4:+74801830 None:intergenic
TGATGGGTCTGTTACATTGA+TGG 0.523388 4:-74801691 MsG0480022622.01.T01:CDS
GAAGTACCTAAGACTGATAG+TGG 0.526082 4:+74801744 None:intergenic
ACCACTATTTGGCATATCAA+TGG 0.526712 4:+74801551 None:intergenic
TAATCTGCCCACAGAGGAGA+AGG 0.532639 4:-74800091 MsG0480022622.01.T01:CDS
TGCTCCACGATGAAACTAAG+AGG 0.534585 4:+74799088 None:intergenic
TTGATGGAGTATGTAGGTAA+AGG 0.537527 4:-74801675 MsG0480022622.01.T01:CDS
ATGGAGTATGTAGGTAAAGG+AGG 0.539783 4:-74801672 MsG0480022622.01.T01:CDS
AGCAAAGCCTTCTCCTCTGT+GGG 0.541176 4:+74800084 None:intergenic
GAGTATGTAGGTAAAGGAGG+TGG 0.541348 4:-74801669 MsG0480022622.01.T01:CDS
CCAACTTGGATAAGTGATGA+TGG 0.545731 4:-74800219 MsG0480022622.01.T01:CDS
CATTGTTGGAGTGAAGAAAA+GGG 0.551735 4:+74801788 None:intergenic
GTTGGAGTGAAGAAAAGGGT+TGG 0.561218 4:+74801792 None:intergenic
CGGTATTTATAAACGCCTTG+AGG 0.565322 4:-74800121 MsG0480022622.01.T01:CDS
AGTTTCATCGTGGAGCAAGC+TGG 0.566038 4:-74799082 MsG0480022622.01.T01:CDS
CCATCATCACTTATCCAAGT+TGG 0.566146 4:+74800219 None:intergenic
TTTAGGGAGTTTGGAAGACA+TGG 0.568162 4:-74798984 MsG0480022622.01.T01:CDS
AAGAAAATGATACACCAACT+TGG 0.571987 4:-74800233 MsG0480022622.01.T01:CDS
GGGGTGTGGCGATGAATCCG+AGG 0.573022 4:-74799141 MsG0480022622.01.T01:CDS
AAATAAGTTAGGAAACATGA+AGG 0.578210 4:+74798872 None:intergenic
CAACAGTAGCAAGTGATGAT+GGG 0.579069 4:-74801707 MsG0480022622.01.T01:CDS
GATACTGTGAGACAAGGAAA+AGG 0.580838 4:-74799238 MsG0480022622.01.T01:CDS
TTGCTGAATTCACTCCAAAG+TGG 0.581831 4:-74800066 MsG0480022622.01.T01:CDS
GTTACATTGATGGAGTATGT+AGG 0.584657 4:-74801681 MsG0480022622.01.T01:CDS
CAGCAAAGCCTTCTCCTCTG+TGG 0.586371 4:+74800083 None:intergenic
TGCATGTGTCCCAGAGCCAA+AGG 0.587943 4:+74799984 None:intergenic
CCCCATACAACAAAGTTCGA+TGG 0.588449 4:+74799161 None:intergenic
ATATCAATGGTATAATTGAA+AGG 0.591706 4:+74801564 None:intergenic
TTCATCGTGGAGCAAGCTGG+TGG 0.592470 4:-74799079 MsG0480022622.01.T01:CDS
GGAAAGTTTGAAGCTTTGGT+CGG 0.593641 4:+74801826 None:intergenic
AAGGTGATGAGTTGATAGAA+GGG 0.593820 4:+74801849 None:intergenic
ATCCTAAGAAGTACTCTGCA+AGG 0.594963 4:-74799210 MsG0480022622.01.T01:CDS
GTCGTGACAGATCCCCTCGA+TGG 0.599505 4:-74800186 MsG0480022622.01.T01:CDS
ATACCGAAAATTGTACCAGT+TGG 0.603945 4:+74800138 None:intergenic
CATCGAACTTTGTTGTATGG+GGG 0.606647 4:-74799160 MsG0480022622.01.T01:CDS
TGCTACTGTTGATGAAGATG+AGG 0.607320 4:+74801719 None:intergenic
CACACCGATATAATATCAAG+AGG 0.613129 4:+74801507 None:intergenic
GGGTGTGGCGATGAATCCGA+GGG 0.615240 4:-74799140 MsG0480022622.01.T01:CDS
TAGCATCAAACCTCATAACC+AGG 0.619050 4:+74798920 None:intergenic
GCAGATTATCTAGCTCCTCA+AGG 0.619596 4:+74800106 None:intergenic
AATATTTCGAGAACCATCGA+GGG 0.619869 4:+74800173 None:intergenic
ACAAGACGAAGATGGTCCCT+CGG 0.621507 4:+74799124 None:intergenic
GCTCCACGATGAAACTAAGA+GGG 0.623232 4:+74799089 None:intergenic
GAATGAAGTCTCCTGTTGAA+CGG 0.631390 4:+74799950 None:intergenic
GCTGGTGGGAGAGGATCCGA+TGG 0.631525 4:-74799064 MsG0480022622.01.T01:CDS
AAGTGATGATGGTCCATATG+TGG 0.632479 4:-74800208 MsG0480022622.01.T01:CDS
TCATCGTGGAGCAAGCTGGT+GGG 0.634727 4:-74799078 MsG0480022622.01.T01:CDS
CAATATTTCGAGAACCATCG+AGG 0.656931 4:+74800172 None:intergenic
AGCATTAAAATTCCTCCCCG+TGG 0.680772 4:-74799916 MsG0480022622.01.T01:intron
TATATTGATACTGTGAGACA+AGG 0.681648 4:-74799244 MsG0480022622.01.T01:CDS
GCTAGATAATCTGCCCACAG+AGG 0.689544 4:-74800097 MsG0480022622.01.T01:CDS
GTGCATATGTTACCACGGGG+AGG 0.701876 4:+74799904 None:intergenic
ATATTTCGAGAACCATCGAG+GGG 0.721395 4:+74800174 None:intergenic
AAACCCTCTTAGTTTCATCG+TGG 0.730924 4:-74799092 MsG0480022622.01.T01:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAAAATATCTATCAAATT+AGG + Chr4:74800897-74800916 None:intergenic 10.0%
!!! CTATACAATATTTTTATATT+TGG + Chr4:74799744-74799763 None:intergenic 10.0%
!! AAATATATTAACACAAATGA+TGG + Chr4:74801924-74801943 None:intergenic 15.0%
!! ACATTAATGCTTATAATTTA+TGG - Chr4:74801015-74801034 MsG0480022622.01.T01:intron 15.0%
!! TATAAAAATAAACTGAAAAC+AGG - Chr4:74801213-74801232 MsG0480022622.01.T01:intron 15.0%
!! TTTCTATTAGGTTTAAATAT+CGG + Chr4:74799841-74799860 None:intergenic 15.0%
!!! ATAAAAAACACTTTAAAAGT+CGG - Chr4:74799552-74799571 MsG0480022622.01.T01:intron 15.0%
!! AACATAGTTACAAATAAGTT+AGG + Chr4:74801869-74801888 None:intergenic 20.0%
!! AACTCAATATAGCATAAATT+AGG - Chr4:74799528-74799547 MsG0480022622.01.T01:intron 20.0%
!! ATATCAATGGTATAATTGAA+AGG + Chr4:74799166-74799185 None:intergenic 20.0%
!! TAACAAAACCCTTTATTAAA+AGG - Chr4:74800365-74800384 MsG0480022622.01.T01:intron 20.0%
!! TATTAGAAAATAAGTCATCT+AGG - Chr4:74799694-74799713 MsG0480022622.01.T01:intron 20.0%
!! TCTGTTATATTATCAAATGT+TGG - Chr4:74800927-74800946 MsG0480022622.01.T01:intron 20.0%
!! TTAAGCTATTTATCAAGAAA+GGG + Chr4:74801041-74801060 None:intergenic 20.0%
!! TTCTATTAGGTTTAAATATC+GGG + Chr4:74799840-74799859 None:intergenic 20.0%
!!! CTCTTTTTCCTTTTAATAAA+GGG + Chr4:74800376-74800395 None:intergenic 20.0%
!!! GAATGTTTTCATTTTCATTT+CGG + Chr4:74798806-74798825 None:intergenic 20.0%
!!! TCTCTTTTTCCTTTTAATAA+AGG + Chr4:74800377-74800396 None:intergenic 20.0%
!!! TTCAAAATTTTGAGAATTGA+GGG - Chr4:74799912-74799931 MsG0480022622.01.T01:intron 20.0%
!!! TTGATAATATAACAGAAGAT+AGG + Chr4:74800923-74800942 None:intergenic 20.0%
!!! TTTATTTTTATAAGCTCTTC+AGG + Chr4:74801205-74801224 None:intergenic 20.0%
! AAAAAAATCATCCAAACTCA+TGG + Chr4:74799266-74799285 None:intergenic 25.0%
! AAAGCCTCTTGATATTATAT+CGG - Chr4:74799216-74799235 MsG0480022622.01.T01:CDS 25.0%
! AAATAAGTTAGGAAACATGA+AGG + Chr4:74801858-74801877 None:intergenic 25.0%
! GTAAGTTATATGAAAACACA+AGG + Chr4:74799873-74799892 None:intergenic 25.0%
! GTTAAGCTATTTATCAAGAA+AGG + Chr4:74801042-74801061 None:intergenic 25.0%
! GTTCTACAACTTAGATATAA+GGG + Chr4:74800010-74800029 None:intergenic 25.0%
! GTTCTAGTAATGTTGTTAAA+TGG - Chr4:74800192-74800211 MsG0480022622.01.T01:CDS 25.0%
! TGTTCTACAACTTAGATATA+AGG + Chr4:74800011-74800030 None:intergenic 25.0%
! TTCTACAACTTAGATATAAG+GGG + Chr4:74800009-74800028 None:intergenic 25.0%
!! GTTTGTCATAATGGAAATAT+AGG + Chr4:74800171-74800190 None:intergenic 25.0%
!! TAAGGCTAATTTTCTTTCAT+TGG - Chr4:74800962-74800981 MsG0480022622.01.T01:intron 25.0%
!! TTACATTAATTTTCGATGAG+TGG + Chr4:74799982-74800001 None:intergenic 25.0%
!! TTTGTGTGTTGTTGTTAATT+GGG - Chr4:74799335-74799354 MsG0480022622.01.T01:intron 25.0%
!! TTTTGATCTTATGTCAGAAT+TGG - Chr4:74800231-74800250 MsG0480022622.01.T01:CDS 25.0%
!!! AATGTTGTTAAATGGATTGT+TGG - Chr4:74800200-74800219 MsG0480022622.01.T01:CDS 25.0%
!!! ATGATGCAAGATATTTTGAT+TGG - Chr4:74801442-74801461 MsG0480022622.01.T01:intron 25.0%
!!! ATGTTGTTAAATGGATTGTT+GGG - Chr4:74800201-74800220 MsG0480022622.01.T01:CDS 25.0%
!!! ATTAACACAAATGATGGATA+AGG + Chr4:74801918-74801937 None:intergenic 25.0%
!!! CTTCAAAATTTTGAGAATTG+AGG - Chr4:74799911-74799930 MsG0480022622.01.T01:intron 25.0%
!!! TCAGTAATGGGTTTAAAAAT+AGG + Chr4:74800258-74800277 None:intergenic 25.0%
!!! TCTTCACTTTTGTTTTTCTT+GGG - Chr4:74801949-74801968 MsG0480022622.01.T01:five_prime_UTR 25.0%
AAAAGTAAATCCTGGTTATG+AGG - Chr4:74801797-74801816 MsG0480022622.01.T01:CDS 30.0%
AAACTGTTTGGTTGAGTTTA+TGG + Chr4:74801300-74801319 None:intergenic 30.0%
AAATCGGTGGTTGAAAATAT+TGG - Chr4:74799368-74799387 MsG0480022622.01.T01:intron 30.0%
AAATTACCTTTGTAACAAGC+TGG - Chr4:74799636-74799655 MsG0480022622.01.T01:intron 30.0%
AAGAAAATGATACACCAACT+TGG - Chr4:74800494-74800513 MsG0480022622.01.T01:intron 30.0%
AATAAACTGAAAACAGGCTA+TGG - Chr4:74801219-74801238 MsG0480022622.01.T01:intron 30.0%
AATCGGTGGTTGAAAATATT+GGG - Chr4:74799369-74799388 MsG0480022622.01.T01:intron 30.0%
AATTGGTGTGAATGATGATT+TGG - Chr4:74799081-74799100 MsG0480022622.01.T01:CDS 30.0%
ACTAACCAAGACAATCAAAA+AGG + Chr4:74799293-74799312 None:intergenic 30.0%
ACTAGAACAGTTTGTCATAA+TGG + Chr4:74800180-74800199 None:intergenic 30.0%
AGAAAATAAGTCATCTAGGT+CGG - Chr4:74799698-74799717 MsG0480022622.01.T01:intron 30.0%
ATATATTTCCTTAAGCCTTC+AGG + Chr4:74801468-74801487 None:intergenic 30.0%
ATTGGGAATCATGACAAAAT+CGG - Chr4:74799352-74799371 MsG0480022622.01.T01:intron 30.0%
CAGTCAACAACATAAACTTA+GGG + Chr4:74801381-74801400 None:intergenic 30.0%
CTAACCAAGACAATCAAAAA+GGG + Chr4:74799292-74799311 None:intergenic 30.0%
CTAGCCATTATGTATGTAAA+AGG - Chr4:74800324-74800343 MsG0480022622.01.T01:intron 30.0%
CTCTAACATAAGAGTTTCTA+AGG + Chr4:74800084-74800103 None:intergenic 30.0%
CTCTTAAGAAGAAGAATAAG+TGG - Chr4:74799438-74799457 MsG0480022622.01.T01:intron 30.0%
GAAAACATTCTGATGAAACT+TGG - Chr4:74798816-74798835 MsG0480022622.01.T01:three_prime_UTR 30.0%
GATATAATATCAAGAGGCTT+TGG + Chr4:74799217-74799236 None:intergenic 30.0%
GTACAACAAAAAGTAAATCC+TGG - Chr4:74801789-74801808 MsG0480022622.01.T01:CDS 30.0%
TAGTATGGTACATCAGTAAT+GGG + Chr4:74800270-74800289 None:intergenic 30.0%
TATATTGATACTGTGAGACA+AGG - Chr4:74801483-74801502 MsG0480022622.01.T01:intron 30.0%
TCTATTGAATTCCATGAGTT+TGG - Chr4:74799252-74799271 MsG0480022622.01.T01:CDS 30.0%
TTAAAGTGCATATGTTACCA+CGG + Chr4:74800831-74800850 None:intergenic 30.0%
TTGTCATCACTTCAAAAATC+TGG - Chr4:74800448-74800467 MsG0480022622.01.T01:intron 30.0%
TTGTTACAAAGGTAATTTGG+TGG + Chr4:74799634-74799653 None:intergenic 30.0%
TTTCATTCTGCAATAATGCA+TGG + Chr4:74800423-74800442 None:intergenic 30.0%
TTTCCACTGAAAACAACTTA+TGG - Chr4:74801256-74801275 MsG0480022622.01.T01:intron 30.0%
! AAAGACTTCCTCTCTTTTTA+GGG - Chr4:74801727-74801746 MsG0480022622.01.T01:CDS 30.0%
! AAGAAAAGGGTTGGAATTTT+TGG + Chr4:74798929-74798948 None:intergenic 30.0%
! ACACATTTTCCTCCTTTTTT+GGG + Chr4:74798782-74798801 None:intergenic 30.0%
! ACAGCCTTTTACATACATAA+TGG + Chr4:74800331-74800350 None:intergenic 30.0%
! AGGATGACTCATTTTCTATT+AGG + Chr4:74799853-74799872 None:intergenic 30.0%
! ATACCAACTGGTACAATTTT+CGG - Chr4:74800586-74800605 MsG0480022622.01.T01:intron 30.0%
! GTTTGTGTGTTGTTGTTAAT+TGG - Chr4:74799334-74799353 MsG0480022622.01.T01:intron 30.0%
!! AGCTTGTTACAAAGGTAATT+TGG + Chr4:74799637-74799656 None:intergenic 30.0%
!! TCAAAATTTTGAAGACCCTT+GGG + Chr4:74799905-74799924 None:intergenic 30.0%
!! TTTTCCCTTTTTGATTGTCT+TGG - Chr4:74799285-74799304 MsG0480022622.01.T01:CDS 30.0%
!!! AAGAATCCTACTTTTTCCAT+CGG + Chr4:74801682-74801701 None:intergenic 30.0%
!!! CTCTTCACTTTTGTTTTTCT+TGG - Chr4:74801948-74801967 MsG0480022622.01.T01:five_prime_UTR 30.0%
AATATTTCGAGAACCATCGA+GGG + Chr4:74800557-74800576 None:intergenic 35.0%
ACCACTATTTGGCATATCAA+TGG + Chr4:74799179-74799198 None:intergenic 35.0%
ACCATTGATATGCCAAATAG+TGG - Chr4:74799175-74799194 MsG0480022622.01.T01:CDS 35.0%
ACTATACTCTGCATTACCTT+TGG - Chr4:74800727-74800746 MsG0480022622.01.T01:intron 35.0%
AGTGGGTAGAAACATATACA+GGG + Chr4:74799486-74799505 None:intergenic 35.0%
ATACCGAAAATTGTACCAGT+TGG + Chr4:74800592-74800611 None:intergenic 35.0%
ATGGAAGAGTTGGAAAGTTA+TGG - Chr4:74801762-74801781 MsG0480022622.01.T01:CDS 35.0%
ATTCACTCCAAAGTGGAAAT+AGG - Chr4:74800668-74800687 MsG0480022622.01.T01:intron 35.0%
ATTCTGCAATAATGCATGGT+GGG + Chr4:74800419-74800438 None:intergenic 35.0%
ATTTGAGCAACTCCCAAAAA+AGG - Chr4:74798767-74798786 MsG0480022622.01.T01:three_prime_UTR 35.0%
CACACCGATATAATATCAAG+AGG + Chr4:74799223-74799242 None:intergenic 35.0%
CATAAACTTAGGGACTGTAT+AGG + Chr4:74801371-74801390 None:intergenic 35.0%
CATTGTTGGAGTGAAGAAAA+GGG + Chr4:74798942-74798961 None:intergenic 35.0%
CTAAAAAGAGAGGAAGTCTT+TGG + Chr4:74801728-74801747 None:intergenic 35.0%
CTAGTATGGTACATCAGTAA+TGG + Chr4:74800271-74800290 None:intergenic 35.0%
CTCACAAATGTTCATGTCTA+CGG - Chr4:74801325-74801344 MsG0480022622.01.T01:intron 35.0%
CTTATGTTAGAGTGTGTTGA+AGG - Chr4:74800092-74800111 MsG0480022622.01.T01:CDS 35.0%
CTTCATAAACAAGACGAAGA+TGG + Chr4:74801614-74801633 None:intergenic 35.0%
GCAGTCAACAACATAAACTT+AGG + Chr4:74801382-74801401 None:intergenic 35.0%
GTAAAACCACTATCAGTCTT+AGG - Chr4:74798977-74798996 MsG0480022622.01.T01:CDS 35.0%
GTCAACATTCAAGACTAGTA+TGG + Chr4:74800285-74800304 None:intergenic 35.0%
GTTACATTGATGGAGTATGT+AGG - Chr4:74799046-74799065 MsG0480022622.01.T01:CDS 35.0%
TAAAGTGCATATGTTACCAC+GGG + Chr4:74800830-74800849 None:intergenic 35.0%
TCTATGTATGTAAGTCTTGC+AGG - Chr4:74800135-74800154 MsG0480022622.01.T01:CDS 35.0%
TTGATGGAGTATGTAGGTAA+AGG - Chr4:74799052-74799071 MsG0480022622.01.T01:CDS 35.0%
TTGTGAGTTGTGAAACTGTT+TGG + Chr4:74801312-74801331 None:intergenic 35.0%
! CAAAGACTTCCTCTCTTTTT+AGG - Chr4:74801726-74801745 MsG0480022622.01.T01:CDS 35.0%
! CACACATTTTCCTCCTTTTT+TGG + Chr4:74798783-74798802 None:intergenic 35.0%
! GAAAATTGTACCAGTTGGTA+TGG + Chr4:74800587-74800606 None:intergenic 35.0%
! TCCATCGAACTTTGTTGTAT+GGG - Chr4:74801565-74801584 MsG0480022622.01.T01:CDS 35.0%
! TTTTTGTCAAGTAGCCACAA+TGG - Chr4:74799406-74799425 MsG0480022622.01.T01:intron 35.0%
!! AAGAGAATTTCTAGCCATTG+TGG + Chr4:74799423-74799442 None:intergenic 35.0%
!! AAGGTGATGAGTTGATAGAA+GGG + Chr4:74798881-74798900 None:intergenic 35.0%
!! ACAAAACCAGCTTGTTACAA+AGG + Chr4:74799645-74799664 None:intergenic 35.0%
!! AGTCCATAAGTTGTTTTCAG+TGG + Chr4:74801262-74801281 None:intergenic 35.0%
!! CAAAATTTTGAAGACCCTTG+GGG + Chr4:74799904-74799923 None:intergenic 35.0%
!! CTCAAAATTTTGAAGACCCT+TGG + Chr4:74799906-74799925 None:intergenic 35.0%
!! TGTTGGAAGCATCTTACATA+AGG - Chr4:74800944-74800963 MsG0480022622.01.T01:intron 35.0%
!!! AAAGGGTTGGAATTTTTGGT+TGG + Chr4:74798925-74798944 None:intergenic 35.0%
!!! AGATATTTTGATTGGCCTGA+AGG - Chr4:74801450-74801469 MsG0480022622.01.T01:intron 35.0%
!!! CTCTTGTTTTTTGTCACTCA+GGG - Chr4:74801403-74801422 MsG0480022622.01.T01:intron 35.0%
!!! CTTTTGTTTTTCTTGGGAGA+TGG - Chr4:74801955-74801974 MsG0480022622.01.T01:five_prime_UTR 35.0%
!!! TCTCTTGTTTTTTGTCACTC+AGG - Chr4:74801402-74801421 MsG0480022622.01.T01:intron 35.0%
AAACCCTCTTAGTTTCATCG+TGG - Chr4:74801635-74801654 MsG0480022622.01.T01:CDS 40.0%
AAAGTGCATATGTTACCACG+GGG + Chr4:74800829-74800848 None:intergenic 40.0%
AACTTACCAATTAAGCCCCA+AGG - Chr4:74799886-74799905 MsG0480022622.01.T01:intron 40.0%
AACTTAGGGACTGTATAGGA+TGG + Chr4:74801367-74801386 None:intergenic 40.0%
ACTGATGCACAGATAGAAAC+AGG + Chr4:74799955-74799974 None:intergenic 40.0%
ACTTACCAATTAAGCCCCAA+GGG - Chr4:74799887-74799906 MsG0480022622.01.T01:intron 40.0%
ACTTTGTTGGATGACTCGAA+TGG + Chr4:74799778-74799797 None:intergenic 40.0%
AGAAGAATAAGTGGTGTGTC+AGG - Chr4:74799447-74799466 MsG0480022622.01.T01:intron 40.0%
AGTGACGAGTATCACTTTGT+TGG + Chr4:74799791-74799810 None:intergenic 40.0%
ATACTCGTCACTCTACGAAT+TGG - Chr4:74799799-74799818 MsG0480022622.01.T01:intron 40.0%
ATATTTCGAGAACCATCGAG+GGG + Chr4:74800556-74800575 None:intergenic 40.0%
ATCTGGAAAAGTTGCTGTCA+TGG - Chr4:74800465-74800484 MsG0480022622.01.T01:intron 40.0%
ATGGAGTATGTAGGTAAAGG+AGG - Chr4:74799055-74799074 MsG0480022622.01.T01:CDS 40.0%
ATTGATGCATCCATACCAAC+TGG - Chr4:74800574-74800593 MsG0480022622.01.T01:intron 40.0%
CAACAGTAGCAAGTGATGAT+GGG - Chr4:74799020-74799039 MsG0480022622.01.T01:CDS 40.0%
CAATATTTCGAGAACCATCG+AGG + Chr4:74800558-74800577 None:intergenic 40.0%
CAGTGGGTAGAAACATATAC+AGG + Chr4:74799487-74799506 None:intergenic 40.0%
CATTCTGCAATAATGCATGG+TGG + Chr4:74800420-74800439 None:intergenic 40.0%
CCAACTTGGATAAGTGATGA+TGG - Chr4:74800508-74800527 MsG0480022622.01.T01:intron 40.0%
CCATCATCACTTATCCAAGT+TGG + Chr4:74800511-74800530 None:intergenic 40.0%
CCATTGTTGGAGTGAAGAAA+AGG + Chr4:74798943-74798962 None:intergenic 40.0%
CGGTATTTATAAACGCCTTG+AGG - Chr4:74800606-74800625 MsG0480022622.01.T01:intron 40.0%
CTATCAGCCTATTTCCACTT+TGG + Chr4:74800678-74800697 None:intergenic 40.0%
CTTGTTACTGAAGCCATTGT+TGG + Chr4:74798956-74798975 None:intergenic 40.0%
GAAGAATAAGTGGTGTGTCA+GGG - Chr4:74799448-74799467 MsG0480022622.01.T01:intron 40.0%
GAATGAAGTCTCCTGTTGAA+CGG + Chr4:74800780-74800799 None:intergenic 40.0%
GATACTGTGAGACAAGGAAA+AGG - Chr4:74801489-74801508 MsG0480022622.01.T01:intron 40.0%
GTGGGTAGAAACATATACAG+GGG + Chr4:74799485-74799504 None:intergenic 40.0%
TAGCATCAAACCTCATAACC+AGG + Chr4:74801810-74801829 None:intergenic 40.0%
TCAACAGTAGCAAGTGATGA+TGG - Chr4:74799019-74799038 MsG0480022622.01.T01:CDS 40.0%
TCCAAACTCCCTAAAAAGAG+AGG + Chr4:74801738-74801757 None:intergenic 40.0%
TCCCTATCAGAACCACTATT+TGG + Chr4:74799190-74799209 None:intergenic 40.0%
TGGCCTAATTCAACTCTACA+AGG + Chr4:74799724-74799743 None:intergenic 40.0%
TTCTGCAATAATGCATGGTG+GGG + Chr4:74800418-74800437 None:intergenic 40.0%
TTGCTGAATTCACTCCAAAG+TGG - Chr4:74800661-74800680 MsG0480022622.01.T01:intron 40.0%
TTTAGGGAGTTTGGAAGACA+TGG - Chr4:74801743-74801762 MsG0480022622.01.T01:CDS 40.0%
TTTGGAAGACATGGAAGAGT+TGG - Chr4:74801752-74801771 MsG0480022622.01.T01:CDS 40.0%
! AGTCTTTGGTGCAGTTTAAC+TGG + Chr4:74801714-74801733 None:intergenic 40.0%
! CATCGAACTTTGTTGTATGG+GGG - Chr4:74801567-74801586 MsG0480022622.01.T01:CDS 40.0%
! CCATCGAACTTTGTTGTATG+GGG - Chr4:74801566-74801585 MsG0480022622.01.T01:CDS 40.0%
! CCTTTTCTTCACTCCAACAA+TGG - Chr4:74798940-74798959 MsG0480022622.01.T01:CDS 40.0%
! CTCCATCGAACTTTGTTGTA+TGG - Chr4:74801564-74801583 MsG0480022622.01.T01:CDS 40.0%
! GAAGTACCTAAGACTGATAG+TGG + Chr4:74798986-74799005 None:intergenic 40.0%
! GGAAAGTTTGAAGCTTTGGT+CGG + Chr4:74798904-74798923 None:intergenic 40.0%
! GGTTGGAAAGTTTGAAGCTT+TGG + Chr4:74798908-74798927 None:intergenic 40.0%
! TACCTTGCAGAGTACTTCTT+AGG + Chr4:74801522-74801541 None:intergenic 40.0%
! TGATGGGTCTGTTACATTGA+TGG - Chr4:74799036-74799055 MsG0480022622.01.T01:CDS 40.0%
! TGCTACTGTTGATGAAGATG+AGG + Chr4:74799011-74799030 None:intergenic 40.0%
!! AAGTGATGATGGTCCATATG+TGG - Chr4:74800519-74800538 MsG0480022622.01.T01:intron 40.0%
!! ATCCTAAGAAGTACTCTGCA+AGG - Chr4:74801517-74801536 MsG0480022622.01.T01:CDS 40.0%
!! GAAGGTGATGAGTTGATAGA+AGG + Chr4:74798882-74798901 None:intergenic 40.0%
!! GCCAAATAGTGGTTCTGATA+GGG - Chr4:74799186-74799205 MsG0480022622.01.T01:CDS 40.0%
!! TCCTCTCTTTTTAGGGAGTT+TGG - Chr4:74801734-74801753 MsG0480022622.01.T01:CDS 40.0%
!! TGCCAAATAGTGGTTCTGAT+AGG - Chr4:74799185-74799204 MsG0480022622.01.T01:CDS 40.0%
!!! ACAAGCTGGTTTTGTAGAGA+TGG - Chr4:74799650-74799669 MsG0480022622.01.T01:intron 40.0%
!!! CAAGCTGGTTTTGTAGAGAT+GGG - Chr4:74799651-74799670 MsG0480022622.01.T01:intron 40.0%
AGCATTAAAATTCCTCCCCG+TGG - Chr4:74800811-74800830 MsG0480022622.01.T01:intron 45.0%
CCCCATACAACAAAGTTCGA+TGG + Chr4:74801569-74801588 None:intergenic 45.0%
CGTCACTCTACGAATTGGTT+TGG - Chr4:74799804-74799823 MsG0480022622.01.T01:intron 45.0%
GAGGATCCGATGGAAAAAGT+AGG - Chr4:74801673-74801692 MsG0480022622.01.T01:CDS 45.0%
GAGTATGTAGGTAAAGGAGG+TGG - Chr4:74799058-74799077 MsG0480022622.01.T01:CDS 45.0%
GCTCCACGATGAAACTAAGA+GGG + Chr4:74801641-74801660 None:intergenic 45.0%
GGAAATAGGCTGATAGCTTC+TGG - Chr4:74800682-74800701 MsG0480022622.01.T01:intron 45.0%
GGGAATCATGACAAAATCGG+TGG - Chr4:74799355-74799374 MsG0480022622.01.T01:intron 45.0%
GTAGGTAAAGGAGGTGGAAT+TGG - Chr4:74799064-74799083 MsG0480022622.01.T01:CDS 45.0%
GTTGGAGTGAAGAAAAGGGT+TGG + Chr4:74798938-74798957 None:intergenic 45.0%
TGAGCAACTCCCAAAAAAGG+AGG - Chr4:74798770-74798789 MsG0480022622.01.T01:three_prime_UTR 45.0%
TGCTCCACGATGAAACTAAG+AGG + Chr4:74801642-74801661 None:intergenic 45.0%
TTCACTCTTGACCGTTCAAC+AGG - Chr4:74800766-74800785 MsG0480022622.01.T01:intron 45.0%
! AACTTTGTTGTATGGGGGTG+TGG - Chr4:74801572-74801591 MsG0480022622.01.T01:CDS 45.0%
! AGTTTGAAGCTTTGGTCGGA+AGG + Chr4:74798900-74798919 None:intergenic 45.0%
! CGGCCTTGTAGAGTTGAATT+AGG - Chr4:74799718-74799737 MsG0480022622.01.T01:intron 45.0%
! GCAGATTATCTAGCTCCTCA+AGG + Chr4:74800624-74800643 None:intergenic 45.0%
!! CGGGGAGGAATTTTAATGCT+TGG + Chr4:74800811-74800830 None:intergenic 45.0%
!! TCTGCATTACCTTTGGCTCT+GGG - Chr4:74800734-74800753 MsG0480022622.01.T01:intron 45.0%
!! TTGATTGGCCTGAAGGCTTA+AGG - Chr4:74801457-74801476 MsG0480022622.01.T01:intron 45.0%
ACAAGACGAAGATGGTCCCT+CGG + Chr4:74801606-74801625 None:intergenic 50.0%
AGCAAAGCCTTCTCCTCTGT+GGG + Chr4:74800646-74800665 None:intergenic 50.0%
AGTTTCATCGTGGAGCAAGC+TGG - Chr4:74801645-74801664 MsG0480022622.01.T01:CDS 50.0%
GAAGACCCTTGGGGCTTAAT+TGG + Chr4:74799895-74799914 None:intergenic 50.0%
GCTAGATAATCTGCCCACAG+AGG - Chr4:74800630-74800649 MsG0480022622.01.T01:intron 50.0%
GGATCTGTCACGACCACATA+TGG + Chr4:74800535-74800554 None:intergenic 50.0%
TAATCTGCCCACAGAGGAGA+AGG - Chr4:74800636-74800655 MsG0480022622.01.T01:intron 50.0%
TACCCACTGAGCTAAGCTCA+CGG - Chr4:74799498-74799517 MsG0480022622.01.T01:intron 50.0%
! CTCTGCATTACCTTTGGCTC+TGG - Chr4:74800733-74800752 MsG0480022622.01.T01:intron 50.0%
ACCCACTGAGCTAAGCTCAC+GGG - Chr4:74799499-74799518 MsG0480022622.01.T01:intron 55.0%
CAGCAAAGCCTTCTCCTCTG+TGG + Chr4:74800647-74800666 None:intergenic 55.0%
GGTGTGTCAGGGTTCGAACT+CGG - Chr4:74799459-74799478 MsG0480022622.01.T01:intron 55.0%
GTGCATATGTTACCACGGGG+AGG + Chr4:74800826-74800845 None:intergenic 55.0%
TCATCGTGGAGCAAGCTGGT+GGG - Chr4:74801649-74801668 MsG0480022622.01.T01:CDS 55.0%
TGCATGTGTCCCAGAGCCAA+AGG + Chr4:74800746-74800765 None:intergenic 55.0%
TTCATCGTGGAGCAAGCTGG+TGG - Chr4:74801648-74801667 MsG0480022622.01.T01:CDS 55.0%
CCCACTGAGCTAAGCTCACG+GGG - Chr4:74799500-74799519 MsG0480022622.01.T01:intron 60.0%
CCCCGTGAGCTTAGCTCAGT+GGG + Chr4:74799503-74799522 None:intergenic 60.0%
GGGTGTGGCGATGAATCCGA+GGG - Chr4:74801587-74801606 MsG0480022622.01.T01:CDS 60.0%
GTCGTGACAGATCCCCTCGA+TGG - Chr4:74800541-74800560 MsG0480022622.01.T01:intron 60.0%
TCCCCGTGAGCTTAGCTCAG+TGG + Chr4:74799504-74799523 None:intergenic 60.0%
GCTGGTGGGAGAGGATCCGA+TGG - Chr4:74801663-74801682 MsG0480022622.01.T01:CDS 65.0%
GGGGTGTGGCGATGAATCCG+AGG - Chr4:74801586-74801605 MsG0480022622.01.T01:CDS 65.0%
GTGGAGCAAGCTGGTGGGAG+AGG - Chr4:74801654-74801673 MsG0480022622.01.T01:CDS 65.0%
Chromosome Type Strat End Strand Name
Chr4 gene 74798765 74801984 74798765 ID=MsG0480022622.01;Name=MsG0480022622.01
Chr4 mRNA 74798765 74801984 74798765 ID=MsG0480022622.01.T01;Parent=MsG0480022622.01;Name=MsG0480022622.01.T01;_AED=0.43;_eAED=0.43;_QI=89|1|1|1|1|1|3|160|393
Chr4 exon 74798765 74799325 74798765 ID=MsG0480022622.01.T01:exon:31562;Parent=MsG0480022622.01.T01
Chr4 exon 74799917 74800313 74799917 ID=MsG0480022622.01.T01:exon:31561;Parent=MsG0480022622.01.T01
Chr4 exon 74801512 74801984 74801512 ID=MsG0480022622.01.T01:exon:31560;Parent=MsG0480022622.01.T01
Chr4 five_prime_UTR 74801896 74801984 74801896 ID=MsG0480022622.01.T01:five_prime_utr;Parent=MsG0480022622.01.T01
Chr4 CDS 74801512 74801895 74801512 ID=MsG0480022622.01.T01:cds;Parent=MsG0480022622.01.T01
Chr4 CDS 74799917 74800313 74799917 ID=MsG0480022622.01.T01:cds;Parent=MsG0480022622.01.T01
Chr4 CDS 74798925 74799325 74798925 ID=MsG0480022622.01.T01:cds;Parent=MsG0480022622.01.T01
Chr4 three_prime_UTR 74798765 74798924 74798765 ID=MsG0480022622.01.T01:three_prime_utr;Parent=MsG0480022622.01.T01
Gene Sequence

>MsG0480022622.01.T01

ATGCAGTCAGCAGCAACAACAACACCCTTCTATCAACTCATCACCTTCCGACCAAAGCTTCAAACTTTCCAACCAAAAATTCCAACCCTTTTCTTCACTCCAACAATGGCTTCAGTAACAAGAGTAAAACCACTATCAGTCTTAGGTACTTCTTCCTCATCTTCATCAACAGTAGCAAGTGATGATGGGTCTGTTACATTGATGGAGTATGTAGGTAAAGGAGGTGGAATTGGTGTGAATGATGATTTGGTGATTTTGATTGATCATATACAGTATGCTTGTAAGAGAATTGCAGCTCTTATAGCTTCTCCTTTCAATTATACCATTGATATGCCAAATAGTGGTTCTGATAGGGATGCTCCAAAGCCTCTTGATATTATATCGAATGAAATTATCTTGTCATCACTTCAAAAATCTGGAAAAGTTGCTGTCATGGCTTCTGAAGAAAATGATACACCAACTTGGATAAGTGATGATGGTCCATATGTGGTCGTGACAGATCCCCTCGATGGTTCTCGAAATATTGATGCATCCATACCAACTGGTACAATTTTCGGTATTTATAAACGCCTTGAGGAGCTAGATAATCTGCCCACAGAGGAGAAGGCTTTGCTGAATTCACTCCAAAGTGGAAATAGGCTGATAGCTTCTGGTTATGTTCTTTATTCATCTGCAACTATACTCTGCATTACCTTTGGCTCTGGGACACATGCATTCACTCTTGACCGTTCAACAGGAGACTTCATTCTGACAAATCCAAGCATTAAAATTCCTCCCCGTGGGCAAATATATTCTGTGAATGATGCAAGATATTTTGATTGGCCTGAAGGCTTAAGGAAATATATTGATACTGTGAGACAAGGAAAAGGTAGATATCCTAAGAAGTACTCTGCAAGGTATATATGCTCTCTAGTAGCTGATCTCCATCGAACTTTGTTGTATGGGGGTGTGGCGATGAATCCGAGGGACCATCTTCGTCTTGTTTATGAAGCAAACCCTCTTAGTTTCATCGTGGAGCAAGCTGGTGGGAGAGGATCCGATGGAAAAAGTAGGATTCTTTCTCTTCAACCAGTTAAACTGCACCAAAGACTTCCTCTCTTTTTAGGGAGTTTGGAAGACATGGAAGAGTTGGAAAGTTATGGAGACGTACAACAAAAAGTAAATCCTGGTTATGAGGTTTGA

Protein sequence

>MsG0480022622.01.T01

MQSAATTTPFYQLITFRPKLQTFQPKIPTLFFTPTMASVTRVKPLSVLGTSSSSSSTVASDDGSVTLMEYVGKGGGIGVNDDLVILIDHIQYACKRIAALIASPFNYTIDMPNSGSDRDAPKPLDIISNEIILSSLQKSGKVAVMASEENDTPTWISDDGPYVVVTDPLDGSRNIDASIPTGTIFGIYKRLEELDNLPTEEKALLNSLQSGNRLIASGYVLYSSATILCITFGSGTHAFTLDRSTGDFILTNPSIKIPPRGQIYSVNDARYFDWPEGLRKYIDTVRQGKGRYPKKYSARYICSLVADLHRTLLYGGVAMNPRDHLRLVYEANPLSFIVEQAGGRGSDGKSRILSLQPVKLHQRLPLFLGSLEDMEELESYGDVQQKVNPGYEV*