Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016370 | sp|Q9LT68|NHD1_ARATH | 88.710 | 310 | 34 | 1 | 18 | 327 | 130 | 438 | 0.0 | 556 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016370 | A0A072VQN5 | 99.388 | 327 | 2 | 0 | 1 | 327 | 115 | 441 | 0.0 | 644 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0016370 | Msa0042760 | 0.829548 | 4.841304e-55 | -8.615850e-47 |
| Msa0016370 | Msa0048410 | 0.803792 | 2.943847e-49 | -8.615850e-47 |
| Msa0016370 | Msa0089530 | 0.805313 | 1.417779e-49 | -8.615850e-47 |
| Msa0016370 | Msa0099090 | 0.802060 | 6.710886e-49 | -8.615850e-47 |
| Msa0016370 | Msa0177180 | 0.819293 | 1.253142e-52 | -8.615850e-47 |
| Msa0016370 | Msa0267320 | 0.815496 | 8.974531e-52 | -8.615850e-47 |
| Msa0016370 | Msa0298590 | 0.811435 | 7.011277e-51 | -8.615850e-47 |
| Msa0016370 | Msa0523420 | 0.806020 | 1.007584e-49 | -8.615850e-47 |
| Msa0016370 | Msa0580430 | 0.805046 | 1.612511e-49 | -8.615850e-47 |
| Msa0016370 | Msa0610240 | 0.830351 | 3.083858e-55 | -8.615850e-47 |
| Msa0016370 | Msa0617470 | 0.807507 | 4.886783e-50 | -8.615850e-47 |
| Msa0016370 | Msa0635070 | 0.819999 | 8.645765e-53 | -8.615850e-47 |
| Msa0016370 | Msa0654400 | 0.820176 | 7.877891e-53 | -8.615850e-47 |
| Msa0016370 | Msa0658520 | 0.838797 | 2.322766e-57 | -8.615850e-47 |
| Msa0016370 | Msa0676570 | 0.800564 | 1.358638e-48 | -8.615850e-47 |
| Msa0016370 | Msa0700250 | 0.805590 | 1.240263e-49 | -8.615850e-47 |
| Msa0016370 | Msa0701800 | 0.816818 | 4.544661e-52 | -8.615850e-47 |
| Msa0016370 | Msa0703430 | 0.827311 | 1.678218e-54 | -8.615850e-47 |
| Msa0016370 | Msa0747660 | 0.810481 | 1.128498e-50 | -8.615850e-47 |
| Msa0016370 | Msa0872890 | 0.821942 | 3.087697e-53 | -8.615850e-47 |
| Msa0016370 | Msa0930090 | 0.832975 | 6.954028e-56 | -8.615850e-47 |
| Msa0016370 | Msa0934290 | 0.804265 | 2.346771e-49 | -8.615850e-47 |
| Msa0016370 | Msa0956600 | 0.844587 | 6.894249e-59 | -8.615850e-47 |
| Msa0016370 | Msa0971780 | 0.805268 | 1.449126e-49 | -8.615850e-47 |
| Msa0016370 | Msa1011140 | 0.805876 | 1.080120e-49 | -8.615850e-47 |
| Msa0016370 | Msa1026160 | 0.807108 | 5.937279e-50 | -8.615850e-47 |
| Msa0016370 | Msa1026720 | 0.832161 | 1.106976e-55 | -8.615850e-47 |
| Msa0016370 | Msa1088400 | 0.804687 | 1.916491e-49 | -8.615850e-47 |
| Msa0016370 | Msa1090020 | 0.816314 | 5.895547e-52 | -8.615850e-47 |
| Msa0016370 | Msa1104020 | 0.802705 | 4.942510e-49 | -8.615850e-47 |
| Msa0016370 | Msa1132900 | 0.820813 | 5.624209e-53 | -8.615850e-47 |
| Msa0016370 | Msa1219530 | 0.823394 | 1.418361e-53 | -8.615850e-47 |
| Msa0016370 | Msa1251960 | 0.803880 | 2.822491e-49 | -8.615850e-47 |
| Msa0016370 | Msa1298540 | 0.805256 | 1.457069e-49 | -8.615850e-47 |
| Msa0016370 | Msa1316880 | 0.815629 | 8.383329e-52 | -8.615850e-47 |
| Msa0016370 | Msa1333220 | 0.800923 | 1.147771e-48 | -8.615850e-47 |
| Msa0016370 | Msa1409360 | 0.823919 | 1.068650e-53 | -8.615850e-47 |
| Msa0016370 | Msa1418780 | 0.800055 | 1.724570e-48 | -8.615850e-47 |
| Msa0016370 | Msa1425630 | 0.816372 | 5.720014e-52 | -8.615850e-47 |
| Msa0016370 | Msa1459130 | 0.817304 | 3.533986e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016370 | MtrunA17_Chr1g0208161 | 99.388 | 327 | 2 | 0 | 1 | 327 | 115 | 441 | 0.0 | 644 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0016370 | AT3G19490.1 | 88.710 | 310 | 34 | 1 | 18 | 327 | 130 | 438 | 0.0 | 556 |
| Msa0016370 | AT1G49810.1 | 74.916 | 299 | 71 | 3 | 31 | 327 | 1 | 297 | 2.02e-157 | 447 |
Find 92 sgRNAs with CRISPR-Local
Find 256 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGGAGAAGGCGCGGGTTTC+GGG | 0.169550 | 1_1:+27175868 | None:intergenic |
| GTATTTGCGGCGGCTGCAAC+TGG | 0.213016 | 1_1:-27178021 | Msa0016370:CDS |
| GAAACCCGCGCCTTCTCCTT+TGG | 0.243497 | 1_1:-27175865 | Msa0016370:CDS |
| AAAGGAGAAGGCGCGGGTTT+CGG | 0.264587 | 1_1:+27175867 | None:intergenic |
| ATGGCATTGCTATTTGTAAT+AGG | 0.267151 | 1_1:-27177829 | Msa0016370:CDS |
| ATGGGGATGTTGCTTGGACT+TGG | 0.286994 | 1_1:-27174491 | Msa0016370:CDS |
| CTTACTGATGCTATCCATTA+TGG | 0.287457 | 1_1:-27174455 | Msa0016370:CDS |
| TATTGATGGCTGTAAGCTTA+TGG | 0.290928 | 1_1:-27177750 | Msa0016370:CDS |
| TTGTTTGCACCGTAGTTATT+TGG | 0.299055 | 1_1:+27175063 | None:intergenic |
| TGCTTGGACTTGGGGTGCTT+TGG | 0.299729 | 1_1:-27174481 | Msa0016370:CDS |
| GCAGGATTCTTCCGATGTTT+TGG | 0.301158 | 1_1:-27174618 | Msa0016370:CDS |
| TGGGGATGTTGCTTGGACTT+GGG | 0.313054 | 1_1:-27174490 | Msa0016370:CDS |
| CAGTGGCAATTAACCATTCT+TGG | 0.318792 | 1_1:-27177996 | Msa0016370:CDS |
| AAACCCGCGCCTTCTCCTTT+GGG | 0.325238 | 1_1:-27175864 | Msa0016370:CDS |
| TATGGGTGATACGGAGTATT+GGG | 0.330175 | 1_1:-27177732 | Msa0016370:CDS |
| TTCTTGGGTTGCCGCAAATC+AGG | 0.342151 | 1_1:-27177980 | Msa0016370:intron |
| GAAACAGCTATTTCAGTTGA+TGG | 0.343478 | 1_1:+27176013 | None:intergenic |
| CCTGTGACGGCCTTGAACAC+TGG | 0.375804 | 1_1:+27174527 | None:intergenic |
| GATTCTGTTGACAGGATACT+TGG | 0.385727 | 1_1:-27175170 | Msa0016370:intron |
| CACAGGTTTGCCTCCATACA+TGG | 0.404270 | 1_1:-27174510 | Msa0016370:CDS |
| CCATACATGGGGATGTTGCT+TGG | 0.413958 | 1_1:-27174497 | Msa0016370:CDS |
| CTGTGACGGCCTTGAACACT+GGG | 0.422911 | 1_1:+27174528 | None:intergenic |
| ATTGATGGCTGTAAGCTTAT+GGG | 0.423937 | 1_1:-27177749 | Msa0016370:CDS |
| GGGGATGTTGCTTGGACTTG+GGG | 0.431405 | 1_1:-27174489 | Msa0016370:CDS |
| CCAAGCAACATCCCCATGTA+TGG | 0.441256 | 1_1:+27174497 | None:intergenic |
| CTTCTGTTCAGTGAAGCTAA+TGG | 0.451539 | 1_1:-27174647 | Msa0016370:intron |
| AGTGGCAATTAACCATTCTT+GGG | 0.454731 | 1_1:-27177995 | Msa0016370:CDS |
| CCATGACTATGGTGGATGTA+AGG | 0.459641 | 1_1:+27175459 | None:intergenic |
| AAGTGGAGTAGGACTATTGA+TGG | 0.468184 | 1_1:-27177764 | Msa0016370:CDS |
| GGTGGTGCATGGACTCCTAT+AGG | 0.479977 | 1_1:-27175119 | Msa0016370:CDS |
| GAATTCTATTATCTGTTAGC+AGG | 0.485936 | 1_1:-27174352 | Msa0016370:CDS |
| ACAACTATGCTGTGGATACA+TGG | 0.487424 | 1_1:-27175086 | Msa0016370:CDS |
| CAAAGCGGTTGCGGTATTTG+CGG | 0.489171 | 1_1:-27178034 | Msa0016370:CDS |
| TCGTTAGCATTCAACAAAAG+TGG | 0.497271 | 1_1:-27177781 | Msa0016370:CDS |
| TAACAGATAATAGAATTCCT+AGG | 0.497522 | 1_1:+27174357 | None:intergenic |
| GAAATAGTGTTCTTCTTGCT+CGG | 0.499864 | 1_1:-27175959 | Msa0016370:CDS |
| CAACAGAGAAACCATGACTA+TGG | 0.501393 | 1_1:+27175448 | None:intergenic |
| CCAGTGTTCAAGGCCGTCAC+AGG | 0.507480 | 1_1:-27174527 | Msa0016370:CDS |
| GATTTGCGGCAACCCAAGAA+TGG | 0.509643 | 1_1:+27177983 | None:intergenic |
| TGAAGCTAATGGCAAGGAGC+AGG | 0.514246 | 1_1:-27174636 | Msa0016370:CDS |
| AAGTGCCACAAGCTCTATCA+AGG | 0.514255 | 1_1:-27174406 | Msa0016370:CDS |
| TGATTTGCTCAAAGCGGTTG+CGG | 0.516767 | 1_1:-27178043 | None:intergenic |
| TATTTGCGGCGGCTGCAACT+GGG | 0.518794 | 1_1:-27178020 | Msa0016370:CDS |
| CTATTTGTAATAGGATATGC+AGG | 0.520556 | 1_1:-27177820 | Msa0016370:CDS |
| GTATTAACGGACCTGATTTG+CGG | 0.522410 | 1_1:+27177969 | None:intergenic |
| CAGCAAATGCGGGTGGTGCA+TGG | 0.522415 | 1_1:-27175130 | Msa0016370:CDS |
| CTGTAAGCTTATGGGTGATA+CGG | 0.522786 | 1_1:-27177741 | Msa0016370:CDS |
| GAACACTATTTCACTGACTT+CGG | 0.522901 | 1_1:+27175970 | None:intergenic |
| GAGTGGAACAGCTAGAGAAA+TGG | 0.525573 | 1_1:+27174792 | None:intergenic |
| GAGATAGTTGATGCTCATCA+AGG | 0.525860 | 1_1:-27175920 | Msa0016370:CDS |
| CTCGCTGCAGGATCTTGCTA+TGG | 0.527644 | 1_1:-27177848 | Msa0016370:intron |
| CATAATGGATAGCATCAGTA+AGG | 0.532025 | 1_1:+27174456 | None:intergenic |
| TTATGGGTGATACGGAGTAT+TGG | 0.533464 | 1_1:-27177733 | Msa0016370:CDS |
| TAGTCATGGTTTCTCTGTTG+CGG | 0.540142 | 1_1:-27175445 | Msa0016370:CDS |
| AACTACGGTGCAAACAATGA+AGG | 0.541788 | 1_1:-27175057 | Msa0016370:intron |
| ACATACTTTCGATACTCTGA+TGG | 0.546158 | 1_1:+27175410 | None:intergenic |
| GGCGGCTGCAACTGGGACAG+TGG | 0.550300 | 1_1:-27178013 | Msa0016370:CDS |
| CCACCCAAAGGAGAAGGCGC+GGG | 0.562805 | 1_1:+27175861 | None:intergenic |
| CACTTACCACCCAAAGGAGA+AGG | 0.565161 | 1_1:+27175855 | None:intergenic |
| ATTATGGTGAATCTGAAAAG+AGG | 0.565293 | 1_1:-27174439 | Msa0016370:CDS |
| GCATTCAACAAAAGTGGAGT+AGG | 0.573037 | 1_1:-27177775 | Msa0016370:CDS |
| AGCGGTTGCGGTATTTGCGG+CGG | 0.574217 | 1_1:-27178031 | Msa0016370:CDS |
| GTTGTGGTAACATCGCCTAT+AGG | 0.578404 | 1_1:+27175104 | None:intergenic |
| GTCAAGGACATTAGAGCGAG+TGG | 0.578934 | 1_1:+27174775 | None:intergenic |
| CCCGCGCCTTCTCCTTTGGG+TGG | 0.580277 | 1_1:-27175861 | Msa0016370:intron |
| GAGAAAACAAGCTTTCCTCT+AGG | 0.582597 | 1_1:+27174578 | None:intergenic |
| ACAGGTTTGCCTCCATACAT+GGG | 0.585649 | 1_1:-27174509 | Msa0016370:CDS |
| TCTATCCTTGATAGAGCTTG+TGG | 0.586748 | 1_1:+27174401 | None:intergenic |
| CCTTACATCCACCATAGTCA+TGG | 0.591496 | 1_1:-27175459 | Msa0016370:CDS |
| ACCACCCAAAGGAGAAGGCG+CGG | 0.609500 | 1_1:+27175860 | None:intergenic |
| GTATGGAGGCAAACCTGTGA+CGG | 0.612161 | 1_1:+27174514 | None:intergenic |
| ATGTATCCACAGCATAGTTG+TGG | 0.621110 | 1_1:+27175088 | None:intergenic |
| GATACATGGCCAAATAACTA+CGG | 0.625569 | 1_1:-27175072 | Msa0016370:CDS |
| AGCAACATCCCCATGTATGG+AGG | 0.630580 | 1_1:+27174500 | None:intergenic |
| TACTTTCGATACTCTGATGG+AGG | 0.633786 | 1_1:+27175413 | None:intergenic |
| CAGAGAAACCATGACTATGG+TGG | 0.633858 | 1_1:+27175451 | None:intergenic |
| GTTCAGTGAAGCTAATGGCA+AGG | 0.634241 | 1_1:-27174642 | Msa0016370:intron |
| ATGTTACCACAACTATGCTG+TGG | 0.636567 | 1_1:-27175094 | Msa0016370:CDS |
| GTTGTAATAGCAGCAAATGC+GGG | 0.638113 | 1_1:-27175140 | Msa0016370:CDS |
| TCGCTCTAATGTCCTTGACT+AGG | 0.639693 | 1_1:-27174771 | Msa0016370:intron |
| AGCATCAACTATCTCAACAA+TGG | 0.643212 | 1_1:+27175928 | None:intergenic |
| CTATCAAGGATAGACACTCA+AGG | 0.646522 | 1_1:-27174392 | Msa0016370:CDS |
| ACAGCTAGAGAAATGGCTGA+AGG | 0.649150 | 1_1:+27174799 | None:intergenic |
| ATGGGTGATACGGAGTATTG+GGG | 0.651221 | 1_1:-27177731 | Msa0016370:intron |
| CTGTTCAGATGCCAAAACAT+CGG | 0.656837 | 1_1:+27174607 | None:intergenic |
| TGAAAACACTTACCACCCAA+AGG | 0.665136 | 1_1:+27175849 | None:intergenic |
| AATACAATAGTACCTAGTCA+AGG | 0.667823 | 1_1:+27174759 | None:intergenic |
| TAAGACTGATTTGCTCAAAG+CGG | 0.669591 | 1_1:-27178049 | None:intergenic |
| CAGGTTTGCCTCCATACATG+GGG | 0.671735 | 1_1:-27174508 | Msa0016370:CDS |
| TGTTGTAATAGCAGCAAATG+CGG | 0.673128 | 1_1:-27175141 | Msa0016370:CDS |
| TCTGAACAGATGGCTCCTAG+AGG | 0.698445 | 1_1:-27174593 | Msa0016370:CDS |
| GTAATAGCAGCAAATGCGGG+TGG | 0.748761 | 1_1:-27175137 | Msa0016370:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAATTAACATTAATA+AGG | - | chr1_1:27175199-27175218 | Msa0016370:intron | 10.0% |
| !!! | TTAATTAAAGTTAGTTTATT+TGG | - | chr1_1:27175988-27176007 | Msa0016370:CDS | 10.0% |
| !!! | ATTTTTTTTGTTTCAAAAAT+TGG | - | chr1_1:27176066-27176085 | Msa0016370:intron | 10.0% |
| !! | TGAGAAATAATAAATAAAAT+TGG | + | chr1_1:27176832-27176851 | None:intergenic | 10.0% |
| !!! | TATTTATTATTTCTCAATAA+CGG | - | chr1_1:27176836-27176855 | Msa0016370:intron | 10.0% |
| !!! | TTTATATTTTAACTCTTGAT+TGG | - | chr1_1:27174694-27174713 | Msa0016370:intron | 15.0% |
| !!! | CAATATATTAAGTTATGTTT+TGG | + | chr1_1:27175434-27175453 | None:intergenic | 15.0% |
| !! | ACATAACTTAATATATTGTA+AGG | - | chr1_1:27175436-27175455 | Msa0016370:CDS | 15.0% |
| !!! | AGTTTTTCTATTATAAAAGT+AGG | - | chr1_1:27175504-27175523 | Msa0016370:intron | 15.0% |
| !! | TTAGTTACTAATAATTAACA+GGG | - | chr1_1:27176246-27176265 | Msa0016370:intron | 15.0% |
| !! | ATTACAATAGTAATCAAATT+TGG | - | chr1_1:27176642-27176661 | Msa0016370:intron | 15.0% |
| !! | AAATAAAGAAAATGCAATTA+TGG | + | chr1_1:27177553-27177572 | None:intergenic | 15.0% |
| !!! | CATAATTTTGTAAATTATGA+AGG | + | chr1_1:27177712-27177731 | None:intergenic | 15.0% |
| !!! | ATATGATTTATTCTGAAAGT+TGG | - | chr1_1:27174501-27174520 | Msa0016370:CDS | 20.0% |
| !!! | GTAGAAAAAATGGTATATTT+TGG | - | chr1_1:27174863-27174882 | Msa0016370:intron | 20.0% |
| !! | CATTAATAAGGATTAGAATA+AGG | - | chr1_1:27175211-27175230 | Msa0016370:intron | 20.0% |
| !! | TTACATAATACAATGAGTAT+AGG | - | chr1_1:27175460-27175479 | Msa0016370:CDS | 20.0% |
| !! | TGAAGGAAAAAAAAATCTTT+AGG | + | chr1_1:27175567-27175586 | None:intergenic | 20.0% |
| !! | ATACTATGATAACCATAAAA+AGG | + | chr1_1:27175880-27175899 | None:intergenic | 20.0% |
| !! | TTAAAAACACAAAATCTTCA+AGG | + | chr1_1:27176035-27176054 | None:intergenic | 20.0% |
| !!! | TATAAAATACCACAATGTTT+TGG | - | chr1_1:27176123-27176142 | Msa0016370:intron | 20.0% |
| !! | AGCTATTATCATTTATTAAG+TGG | + | chr1_1:27176212-27176231 | None:intergenic | 20.0% |
| !! | GTTAGTTACTAATAATTAAC+AGG | - | chr1_1:27176245-27176264 | Msa0016370:intron | 20.0% |
| !!! | CTTTGCATATTGAATTTTTT+TGG | - | chr1_1:27176613-27176632 | Msa0016370:intron | 20.0% |
| !! | TGGATTGTATACAAAATATA+AGG | - | chr1_1:27176662-27176681 | Msa0016370:intron | 20.0% |
| !! | GGATTGTATACAAAATATAA+GGG | - | chr1_1:27176663-27176682 | Msa0016370:intron | 20.0% |
| !! | GATTGTATACAAAATATAAG+GGG | - | chr1_1:27176664-27176683 | Msa0016370:intron | 20.0% |
| !!! | TTTCTAAAATAGCACAATAA+TGG | - | chr1_1:27177070-27177089 | Msa0016370:intron | 20.0% |
| !!! | ATTGCATTTTCTTTATTTTC+AGG | - | chr1_1:27177555-27177574 | Msa0016370:intron | 20.0% |
| !!! | TTGCATTTTCTTTATTTTCA+GGG | - | chr1_1:27177556-27177575 | Msa0016370:intron | 20.0% |
| !! | CATAATTTACAAAATTATGC+TGG | - | chr1_1:27177713-27177732 | Msa0016370:intron | 20.0% |
| !! | GAAGTGAAATAAGGTATTAA+CGG | + | chr1_1:27174435-27174454 | None:intergenic | 25.0% |
| !! | TTAATACCTTATTTCACTTC+TGG | - | chr1_1:27174435-27174454 | Msa0016370:CDS | 25.0% |
| !!! | CTTGATTGCTTTGAAATATA+TGG | - | chr1_1:27174741-27174760 | Msa0016370:intron | 25.0% |
| !! | TTGAAATATATGGTAGTGTT+TGG | - | chr1_1:27174751-27174770 | Msa0016370:intron | 25.0% |
| !! | GTATATTTTTCTGTTCTCTT+TGG | + | chr1_1:27174908-27174927 | None:intergenic | 25.0% |
| !! | CTTTTTGTCTAAAAATGCAT+AGG | - | chr1_1:27174971-27174990 | Msa0016370:intron | 25.0% |
| ! | TACTGTCAAAATAAAGTCTA+TGG | - | chr1_1:27175107-27175126 | Msa0016370:CDS | 25.0% |
| !! | TTCTCTTTTTCTTTTTGTTG+AGG | - | chr1_1:27175152-27175171 | Msa0016370:CDS | 25.0% |
| ! | CTATTACATAAAGTGGAATT+CGG | + | chr1_1:27175351-27175370 | None:intergenic | 25.0% |
| ! | ACATTGCATACAAATTGAAA+AGG | - | chr1_1:27175400-27175419 | Msa0016370:intron | 25.0% |
| ! | CATTGCATACAAATTGAAAA+GGG | - | chr1_1:27175401-27175420 | Msa0016370:intron | 25.0% |
| ! | TTATAAAAGTAGGTCATGTT+TGG | - | chr1_1:27175514-27175533 | Msa0016370:intron | 25.0% |
| ! | TTATAGTAGCAAACAAAAGA+TGG | + | chr1_1:27175851-27175870 | None:intergenic | 25.0% |
| !! | CTATAAAGAAGACCTTTTTA+TGG | - | chr1_1:27175865-27175884 | Msa0016370:CDS | 25.0% |
| ! | AAACAAAAAAAATTAACCCG+CGG | + | chr1_1:27176059-27176078 | None:intergenic | 25.0% |
| ! | TTTATTAAGTGGTGTGTTAT+GGG | + | chr1_1:27176201-27176220 | None:intergenic | 25.0% |
| ! | ATTTATTAAGTGGTGTGTTA+TGG | + | chr1_1:27176202-27176221 | None:intergenic | 25.0% |
| ! | CAAATTAAAATTGCATATGC+AGG | - | chr1_1:27176866-27176885 | Msa0016370:intron | 25.0% |
| ! | TAATTATAAGCACTAATAGC+AGG | + | chr1_1:27177183-27177202 | None:intergenic | 25.0% |
| ! | CTATTAGTGCTTATAATTAG+TGG | - | chr1_1:27177184-27177203 | Msa0016370:intron | 25.0% |
| ! | ATAAATTACTGAGTAGTTTC+AGG | + | chr1_1:27177416-27177435 | None:intergenic | 25.0% |
| ! | AACTACTCAGTAATTTATAG+TGG | - | chr1_1:27177418-27177437 | Msa0016370:intron | 25.0% |
| ! | ACTATATCAAGAGAATATTC+CGG | + | chr1_1:27177479-27177498 | None:intergenic | 25.0% |
| !!! | TACATTTTTCATTTTGACCA+AGG | + | chr1_1:27177529-27177548 | None:intergenic | 25.0% |
| ! | TAACAGATAATAGAATTCCT+AGG | + | chr1_1:27178034-27178053 | None:intergenic | 25.0% |
| AAACAACCAGAAGTGAAATA+AGG | + | chr1_1:27174444-27174463 | None:intergenic | 30.0% | |
| !! | ATGGCATTGCTATTTGTAAT+AGG | - | chr1_1:27174559-27174578 | Msa0016370:CDS | 30.0% |
| CTATTTGTAATAGGATATGC+AGG | - | chr1_1:27174568-27174587 | Msa0016370:CDS | 30.0% | |
| ! | ATATGGTAGTGTTTGGAAAA+TGG | - | chr1_1:27174758-27174777 | Msa0016370:intron | 30.0% |
| ! | TATGGTAGTGTTTGGAAAAT+GGG | - | chr1_1:27174759-27174778 | Msa0016370:intron | 30.0% |
| TATGCATAGTAGAGTAAAAC+AGG | - | chr1_1:27174832-27174851 | Msa0016370:intron | 30.0% | |
| ATGCATAGTAGAGTAAAACA+GGG | - | chr1_1:27174833-27174852 | Msa0016370:intron | 30.0% | |
| TAGAAGATATCCCATTCTTT+GGG | - | chr1_1:27175042-27175061 | Msa0016370:intron | 30.0% | |
| ! | TTTGGGATTCGATTCTTAAA+AGG | - | chr1_1:27175059-27175078 | Msa0016370:CDS | 30.0% |
| ! | AAAAAGAAAAAGAGAAGTGC+TGG | + | chr1_1:27175148-27175167 | None:intergenic | 30.0% |
| TGAATCAGTGTTATGAATAG+TGG | - | chr1_1:27175305-27175324 | Msa0016370:intron | 30.0% | |
| ATCACAATTTCATGTGTGAA+CGG | - | chr1_1:27175704-27175723 | Msa0016370:intron | 30.0% | |
| AAAACTACATGTTCTGTTAC+TGG | + | chr1_1:27175766-27175785 | None:intergenic | 30.0% | |
| TGAAACAGATCAACTTTCTT+TGG | - | chr1_1:27175913-27175932 | Msa0016370:CDS | 30.0% | |
| ! | AGGTAAACTGTTGTTTAGTT+TGG | + | chr1_1:27176015-27176034 | None:intergenic | 30.0% |
| !! | GATTTTGTGTTTTTAATCCG+CGG | - | chr1_1:27176039-27176058 | Msa0016370:intron | 30.0% |
| !! | ATTTTGTGTTTTTAATCCGC+GGG | - | chr1_1:27176040-27176059 | Msa0016370:intron | 30.0% |
| TAACAACATATTATGCGCAT+TGG | + | chr1_1:27176105-27176124 | None:intergenic | 30.0% | |
| ACTTATCTTCCAAAACATTG+TGG | + | chr1_1:27176135-27176154 | None:intergenic | 30.0% | |
| TTAGTAACTAACAGATCAGT+TGG | + | chr1_1:27176237-27176256 | None:intergenic | 30.0% | |
| AATAATTAACAGGGATTGCT+TGG | - | chr1_1:27176255-27176274 | Msa0016370:intron | 30.0% | |
| TTAAAATTGCATATGCAGGT+TGG | - | chr1_1:27176870-27176889 | Msa0016370:intron | 30.0% | |
| !!! | ATTTTTTCTCAGTTCAGTTC+TGG | - | chr1_1:27176902-27176921 | Msa0016370:intron | 30.0% |
| !! | AAAATAGCACAATAATGGAC+AGG | - | chr1_1:27177075-27177094 | Msa0016370:intron | 30.0% |
| !! | AAATAGCACAATAATGGACA+GGG | - | chr1_1:27177076-27177095 | Msa0016370:intron | 30.0% |
| GAATAAAATTAGTCAGGCTA+AGG | + | chr1_1:27177161-27177180 | None:intergenic | 30.0% | |
| TAGCAGGAATAAAATTAGTC+AGG | + | chr1_1:27177167-27177186 | None:intergenic | 30.0% | |
| ATAATTAGTGGAAGTTGCTT+TGG | - | chr1_1:27177196-27177215 | Msa0016370:intron | 30.0% | |
| AAACAATGAAGGTTATCTCT+TGG | - | chr1_1:27177342-27177361 | Msa0016370:intron | 30.0% | |
| TATATCAAGAGAATATTCCG+GGG | + | chr1_1:27177477-27177496 | None:intergenic | 30.0% | |
| CTATATCAAGAGAATATTCC+GGG | + | chr1_1:27177478-27177497 | None:intergenic | 30.0% | |
| TCATAAGTTTACGATTTCCT+TGG | - | chr1_1:27177509-27177528 | Msa0016370:intron | 30.0% | |
| AATACAATAGTACCTAGTCA+AGG | + | chr1_1:27177632-27177651 | None:intergenic | 30.0% | |
| ACTATTCAAATCAGCATTCT+TGG | + | chr1_1:27177666-27177685 | None:intergenic | 30.0% | |
| ! | TCTTTTCAGATTCACCATAA+TGG | + | chr1_1:27177950-27177969 | None:intergenic | 30.0% |
| ATTATGGTGAATCTGAAAAG+AGG | - | chr1_1:27177949-27177968 | Msa0016370:intron | 30.0% | |
| GAATTCTATTATCTGTTAGC+AGG | - | chr1_1:27178036-27178055 | Msa0016370:CDS | 30.0% | |
| AGTGGCAATTAACCATTCTT+GGG | - | chr1_1:27174393-27174412 | Msa0016370:CDS | 35.0% | |
| TCGTTAGCATTCAACAAAAG+TGG | - | chr1_1:27174607-27174626 | Msa0016370:CDS | 35.0% | |
| ! | TATTGATGGCTGTAAGCTTA+TGG | - | chr1_1:27174638-27174657 | Msa0016370:CDS | 35.0% |
| ! | ATTGATGGCTGTAAGCTTAT+GGG | - | chr1_1:27174639-27174658 | Msa0016370:CDS | 35.0% |
| ! | CTTGATTGGTTAGAGCTATA+TGG | - | chr1_1:27174708-27174727 | Msa0016370:intron | 35.0% |
| TGCATAGTAGAGTAAAACAG+GGG | - | chr1_1:27174834-27174853 | Msa0016370:intron | 35.0% | |
| TAGAGTAAAACAGGGGTAAA+AGG | - | chr1_1:27174841-27174860 | Msa0016370:intron | 35.0% | |
| GGGGTAAAAGGTAGAAAAAA+TGG | - | chr1_1:27174853-27174872 | Msa0016370:intron | 35.0% | |
| ATCAGAATAGATGAATCAGG+TGG | + | chr1_1:27175014-27175033 | None:intergenic | 35.0% | |
| CACATCAGAATAGATGAATC+AGG | + | chr1_1:27175017-27175036 | None:intergenic | 35.0% | |
| GTAGAAGATATCCCATTCTT+TGG | - | chr1_1:27175041-27175060 | Msa0016370:intron | 35.0% | |
| AGAATCGAATCCCAAAGAAT+GGG | + | chr1_1:27175055-27175074 | None:intergenic | 35.0% | |
| AAGAATCGAATCCCAAAGAA+TGG | + | chr1_1:27175056-27175075 | None:intergenic | 35.0% | |
| ! | CATTTTGAATGCAGTGGTAT+CGG | + | chr1_1:27175251-27175270 | None:intergenic | 35.0% |
| ! | AGTCAACATTTTGAATGCAG+TGG | + | chr1_1:27175257-27175276 | None:intergenic | 35.0% |
| !! | GTGTTATGAATAGTGGATTG+TGG | - | chr1_1:27175312-27175331 | Msa0016370:intron | 35.0% |
| !! | ATAGTGGATTGTGGAAATAG+CGG | - | chr1_1:27175321-27175340 | Msa0016370:intron | 35.0% |
| GCTTGCACTATTACATAAAG+TGG | + | chr1_1:27175358-27175377 | None:intergenic | 35.0% | |
| CATACAAATTGAAAAGGGAG+CGG | - | chr1_1:27175406-27175425 | Msa0016370:intron | 35.0% | |
| ATTTATGCTAGCTGATGTAG+CGG | + | chr1_1:27175593-27175612 | None:intergenic | 35.0% | |
| CTACATCAGCTAGCATAAAT+TGG | - | chr1_1:27175593-27175612 | Msa0016370:intron | 35.0% | |
| !! | GTTGTCAAGTAGAAGCATTA+GGG | + | chr1_1:27175675-27175694 | None:intergenic | 35.0% |
| !! | TGTTGTCAAGTAGAAGCATT+AGG | + | chr1_1:27175676-27175695 | None:intergenic | 35.0% |
| ATCTGATACCCGTATAGTTA+AGG | + | chr1_1:27175731-27175750 | None:intergenic | 35.0% | |
| TAGTAGCAAACAAAAGATGG+AGG | + | chr1_1:27175848-27175867 | None:intergenic | 35.0% | |
| ! | ATATTATGCGCATTGGTAGA+CGG | + | chr1_1:27176098-27176117 | None:intergenic | 35.0% |
| GAGACAATAAATGCAAGATC+AGG | + | chr1_1:27176162-27176181 | None:intergenic | 35.0% | |
| TTATTGTCTCTCCCTAGTAT+TGG | - | chr1_1:27176172-27176191 | Msa0016370:intron | 35.0% | |
| GTTATGGGATACCAATACTA+GGG | + | chr1_1:27176186-27176205 | None:intergenic | 35.0% | |
| TGTTATGGGATACCAATACT+AGG | + | chr1_1:27176187-27176206 | None:intergenic | 35.0% | |
| TAATGAGAGAAGATACAACG+AGG | + | chr1_1:27176293-27176312 | None:intergenic | 35.0% | |
| TCGAATGTACACATGCAATT+GGG | + | chr1_1:27176318-27176337 | None:intergenic | 35.0% | |
| TTCGAATGTACACATGCAAT+TGG | + | chr1_1:27176319-27176338 | None:intergenic | 35.0% | |
| TCCCTCAATCATTTGTATGT+AGG | - | chr1_1:27176350-27176369 | Msa0016370:intron | 35.0% | |
| GCCTACATACAAATGATTGA+GGG | + | chr1_1:27176354-27176373 | None:intergenic | 35.0% | |
| AGCCTACATACAAATGATTG+AGG | + | chr1_1:27176355-27176374 | None:intergenic | 35.0% | |
| ! | GAAACAGCTATTTCAGTTGA+TGG | + | chr1_1:27176378-27176397 | None:intergenic | 35.0% |
| !! | GAACACTATTTCACTGACTT+CGG | + | chr1_1:27176421-27176440 | None:intergenic | 35.0% |
| GAAATAGTGTTCTTCTTGCT+CGG | - | chr1_1:27176429-27176448 | Msa0016370:intron | 35.0% | |
| AGCATCAACTATCTCAACAA+TGG | + | chr1_1:27176463-27176482 | None:intergenic | 35.0% | |
| !!! | GTTTCGGGTTTTGATATTGT+CGG | + | chr1_1:27176508-27176527 | None:intergenic | 35.0% |
| ACCATACTAAGAATGCTTCT+TGG | - | chr1_1:27176584-27176603 | Msa0016370:intron | 35.0% | |
| ATACAAAATATAAGGGGCTC+AGG | - | chr1_1:27176670-27176689 | Msa0016370:intron | 35.0% | |
| ACATACTTTCGATACTCTGA+TGG | + | chr1_1:27176981-27177000 | None:intergenic | 35.0% | |
| ! | CTCGTTGTGTTACTAACTTT+CGG | - | chr1_1:27177003-27177022 | Msa0016370:intron | 35.0% |
| !! | AATAGCACAATAATGGACAG+GGG | - | chr1_1:27177077-27177096 | Msa0016370:intron | 35.0% |
| !! | GTGGTGTTATCAAGCTATAA+AGG | + | chr1_1:27177137-27177156 | None:intergenic | 35.0% |
| TGTTGTAATAGCAGCAAATG+CGG | - | chr1_1:27177247-27177266 | Msa0016370:intron | 35.0% | |
| GATACATGGCCAAATAACTA+CGG | - | chr1_1:27177316-27177335 | Msa0016370:intron | 35.0% | |
| TTGTTTGCACCGTAGTTATT+TGG | + | chr1_1:27177328-27177347 | None:intergenic | 35.0% | |
| TCCATTGTGATACGTCTATT+TGG | - | chr1_1:27177373-27177392 | Msa0016370:intron | 35.0% | |
| TCCAAATAGACGTATCACAA+TGG | + | chr1_1:27177377-27177396 | None:intergenic | 35.0% | |
| !! | CATAATGGATAGCATCAGTA+AGG | + | chr1_1:27177935-27177954 | None:intergenic | 35.0% |
| CTTACTGATGCTATCCATTA+TGG | - | chr1_1:27177933-27177952 | Msa0016370:intron | 35.0% | |
| CAGTGGCAATTAACCATTCT+TGG | - | chr1_1:27174392-27174411 | Msa0016370:CDS | 40.0% | |
| ! | GTATTAACGGACCTGATTTG+CGG | + | chr1_1:27174422-27174441 | None:intergenic | 40.0% |
| GCATTCAACAAAAGTGGAGT+AGG | - | chr1_1:27174613-27174632 | Msa0016370:CDS | 40.0% | |
| AAGTGGAGTAGGACTATTGA+TGG | - | chr1_1:27174624-27174643 | Msa0016370:CDS | 40.0% | |
| CTGTAAGCTTATGGGTGATA+CGG | - | chr1_1:27174647-27174666 | Msa0016370:intron | 40.0% | |
| TTATGGGTGATACGGAGTAT+TGG | - | chr1_1:27174655-27174674 | Msa0016370:intron | 40.0% | |
| ! | TATGGGTGATACGGAGTATT+GGG | - | chr1_1:27174656-27174675 | Msa0016370:intron | 40.0% |
| !!! | TTTTGGTTTGCCGAAAAGTG+TGG | - | chr1_1:27174880-27174899 | Msa0016370:intron | 40.0% |
| ! | AAAAGCATGACAATGAGCAC+TGG | + | chr1_1:27174933-27174952 | None:intergenic | 40.0% |
| ATTCAAACTGAATGCTGCCA+GGG | + | chr1_1:27175290-27175309 | None:intergenic | 40.0% | |
| TAATAGTGCAAGCAGCATAG+CGG | - | chr1_1:27175365-27175384 | Msa0016370:intron | 40.0% | |
| CTATCCTAGTTTCGCTACTA+CGG | + | chr1_1:27175636-27175655 | None:intergenic | 40.0% | |
| GTGAACGGACCTTAACTATA+CGG | - | chr1_1:27175719-27175738 | Msa0016370:intron | 40.0% | |
| TGAACGGACCTTAACTATAC+GGG | - | chr1_1:27175720-27175739 | Msa0016370:intron | 40.0% | |
| CAAACAAAAGATGGAGGCAA+AGG | + | chr1_1:27175842-27175861 | None:intergenic | 40.0% | |
| ! | GAGATAGTTGATGCTCATCA+AGG | - | chr1_1:27176468-27176487 | Msa0016370:intron | 40.0% |
| TGAAAACACTTACCACCCAA+AGG | + | chr1_1:27176542-27176561 | None:intergenic | 40.0% | |
| !! | GCCAAGAAGCATTCTTAGTA+TGG | + | chr1_1:27176588-27176607 | None:intergenic | 40.0% |
| AAGAGCTCCTTCTTACAACA+AGG | - | chr1_1:27176696-27176715 | Msa0016370:intron | 40.0% | |
| ! | GGTTACACCTTGTTGTAAGA+AGG | + | chr1_1:27176706-27176725 | None:intergenic | 40.0% |
| ACAACAAGGTGTAACCACTT+TGG | - | chr1_1:27176710-27176729 | Msa0016370:intron | 40.0% | |
| TCATTTATGCACAGCCAAAG+TGG | + | chr1_1:27176727-27176746 | None:intergenic | 40.0% | |
| CAACAGAGAAACCATGACTA+TGG | + | chr1_1:27176943-27176962 | None:intergenic | 40.0% | |
| TAGTCATGGTTTCTCTGTTG+CGG | - | chr1_1:27176943-27176962 | Msa0016370:intron | 40.0% | |
| TACTTTCGATACTCTGATGG+AGG | + | chr1_1:27176978-27176997 | None:intergenic | 40.0% | |
| GGGAATTCATGCATCACATA+CGG | - | chr1_1:27177097-27177116 | Msa0016370:intron | 40.0% | |
| TCACATACGGTTTCAGTCAT+TGG | - | chr1_1:27177110-27177129 | Msa0016370:intron | 40.0% | |
| AAATTAGTCAGGCTAAGGAG+TGG | + | chr1_1:27177156-27177175 | None:intergenic | 40.0% | |
| ! | TTGCTTTGGATTCTGTTGAC+AGG | - | chr1_1:27177210-27177229 | Msa0016370:intron | 40.0% |
| GATTCTGTTGACAGGATACT+TGG | - | chr1_1:27177218-27177237 | Msa0016370:intron | 40.0% | |
| GTTGTAATAGCAGCAAATGC+GGG | - | chr1_1:27177248-27177267 | Msa0016370:intron | 40.0% | |
| ATGTTACCACAACTATGCTG+TGG | - | chr1_1:27177294-27177313 | Msa0016370:intron | 40.0% | |
| ATGTATCCACAGCATAGTTG+TGG | + | chr1_1:27177303-27177322 | None:intergenic | 40.0% | |
| ACAACTATGCTGTGGATACA+TGG | - | chr1_1:27177302-27177321 | Msa0016370:intron | 40.0% | |
| AACTACGGTGCAAACAATGA+AGG | - | chr1_1:27177331-27177350 | Msa0016370:intron | 40.0% | |
| CTTCTGTTCAGTGAAGCTAA+TGG | - | chr1_1:27177741-27177760 | Msa0016370:CDS | 40.0% | |
| CTGTTCAGATGCCAAAACAT+CGG | + | chr1_1:27177784-27177803 | None:intergenic | 40.0% | |
| !!! | TGTTTTGGCATCTGAACAGA+TGG | - | chr1_1:27177785-27177804 | Msa0016370:CDS | 40.0% |
| GAGAAAACAAGCTTTCCTCT+AGG | + | chr1_1:27177813-27177832 | None:intergenic | 40.0% | |
| !! | AGGAAAGCTTGTTTTCTCAG+TGG | - | chr1_1:27177815-27177834 | Msa0016370:CDS | 40.0% |
| !! | GGAAAGCTTGTTTTCTCAGT+GGG | - | chr1_1:27177816-27177835 | Msa0016370:CDS | 40.0% |
| !! | CTTGTTTTCTCAGTGGGTTT+AGG | - | chr1_1:27177822-27177841 | Msa0016370:CDS | 40.0% |
| ! | GATTTTTGTCCCAGTGTTCA+AGG | - | chr1_1:27177851-27177870 | Msa0016370:intron | 40.0% |
| TCTATCCTTGATAGAGCTTG+TGG | + | chr1_1:27177990-27178009 | None:intergenic | 40.0% | |
| CTATCAAGGATAGACACTCA+AGG | - | chr1_1:27177996-27178015 | Msa0016370:CDS | 40.0% | |
| !!! | CAAGGAGCACTATTTTTCCT+AGG | - | chr1_1:27178014-27178033 | Msa0016370:CDS | 40.0% |
| !! | ATGGGTGATACGGAGTATTG+GGG | - | chr1_1:27174657-27174676 | Msa0016370:intron | 45.0% |
| !! | CTCTTTGGCTCCACACTTTT+CGG | + | chr1_1:27174893-27174912 | None:intergenic | 45.0% |
| AAATGCATAGGACACTGCAC+AGG | - | chr1_1:27174983-27175002 | Msa0016370:intron | 45.0% | |
| AATGCATAGGACACTGCACA+GGG | - | chr1_1:27174984-27175003 | Msa0016370:intron | 45.0% | |
| TGTGAGACGAGTAATCTTGC+TGG | + | chr1_1:27175087-27175106 | None:intergenic | 45.0% | |
| TTCAAACTGAATGCTGCCAG+GGG | + | chr1_1:27175289-27175308 | None:intergenic | 45.0% | |
| GATTCAAACTGAATGCTGCC+AGG | + | chr1_1:27175291-27175310 | None:intergenic | 45.0% | |
| GCAGCATAGCGGTTGAAAAA+AGG | - | chr1_1:27175376-27175395 | Msa0016370:intron | 45.0% | |
| TAGGTCATGTTTGGCACACA+TGG | - | chr1_1:27175523-27175542 | Msa0016370:intron | 45.0% | |
| !! | CCATGACTATGGTGGATGTA+AGG | + | chr1_1:27176932-27176951 | None:intergenic | 45.0% |
| CCTTACATCCACCATAGTCA+TGG | - | chr1_1:27176929-27176948 | Msa0016370:intron | 45.0% | |
| CAGAGAAACCATGACTATGG+TGG | + | chr1_1:27176940-27176959 | None:intergenic | 45.0% | |
| GTTGTGGTAACATCGCCTAT+AGG | + | chr1_1:27177287-27177306 | None:intergenic | 45.0% | |
| ACAGCTAGAGAAATGGCTGA+AGG | + | chr1_1:27177592-27177611 | None:intergenic | 45.0% | |
| GAGTGGAACAGCTAGAGAAA+TGG | + | chr1_1:27177599-27177618 | None:intergenic | 45.0% | |
| TCGCTCTAATGTCCTTGACT+AGG | - | chr1_1:27177617-27177636 | Msa0016370:intron | 45.0% | |
| GTTCAGTGAAGCTAATGGCA+AGG | - | chr1_1:27177746-27177765 | Msa0016370:CDS | 45.0% | |
| ! | GCAGGATTCTTCCGATGTTT+TGG | - | chr1_1:27177770-27177789 | Msa0016370:CDS | 45.0% |
| ACAGGTTTGCCTCCATACAT+GGG | - | chr1_1:27177879-27177898 | Msa0016370:intron | 45.0% | |
| AAGTGCCACAAGCTCTATCA+AGG | - | chr1_1:27177982-27178001 | Msa0016370:CDS | 45.0% | |
| CAAAGCGGTTGCGGTATTTG+CGG | - | chr1_1:27174354-27174373 | Msa0016370:CDS | 50.0% | |
| GATTTGCGGCAACCCAAGAA+TGG | + | chr1_1:27174408-27174427 | None:intergenic | 50.0% | |
| ! | TTCTTGGGTTGCCGCAAATC+AGG | - | chr1_1:27174408-27174427 | Msa0016370:CDS | 50.0% |
| TCTGTTTGATGTCTCGCTGC+AGG | - | chr1_1:27174528-27174547 | Msa0016370:CDS | 50.0% | |
| !! | GTTGACTTTTCCATACCCCC+TGG | - | chr1_1:27175270-27175289 | Msa0016370:intron | 50.0% |
| TCAAACTGAATGCTGCCAGG+GGG | + | chr1_1:27175288-27175307 | None:intergenic | 50.0% | |
| AGCTGATGTAGCGGCAATGA+AGG | + | chr1_1:27175584-27175603 | None:intergenic | 50.0% | |
| TTTCGCTACTACGGCAGTCA+TGG | + | chr1_1:27175627-27175646 | None:intergenic | 50.0% | |
| ACTGCCGTAGTAGCGAAACT+AGG | - | chr1_1:27175629-27175648 | Msa0016370:intron | 50.0% | |
| CACTTACCACCCAAAGGAGA+AGG | + | chr1_1:27176536-27176555 | None:intergenic | 50.0% | |
| GTAATAGCAGCAAATGCGGG+TGG | - | chr1_1:27177251-27177270 | Msa0016370:intron | 50.0% | |
| GTCAAGGACATTAGAGCGAG+TGG | + | chr1_1:27177616-27177635 | None:intergenic | 50.0% | |
| TGAAGCTAATGGCAAGGAGC+AGG | - | chr1_1:27177752-27177771 | Msa0016370:CDS | 50.0% | |
| TCTGAACAGATGGCTCCTAG+AGG | - | chr1_1:27177795-27177814 | Msa0016370:CDS | 50.0% | |
| GTATGGAGGCAAACCTGTGA+CGG | + | chr1_1:27177877-27177896 | None:intergenic | 50.0% | |
| CACAGGTTTGCCTCCATACA+TGG | - | chr1_1:27177878-27177897 | Msa0016370:intron | 50.0% | |
| CAGGTTTGCCTCCATACATG+GGG | - | chr1_1:27177880-27177899 | Msa0016370:intron | 50.0% | |
| AGCAACATCCCCATGTATGG+AGG | + | chr1_1:27177891-27177910 | None:intergenic | 50.0% | |
| CCAAGCAACATCCCCATGTA+TGG | + | chr1_1:27177894-27177913 | None:intergenic | 50.0% | |
| CCATACATGGGGATGTTGCT+TGG | - | chr1_1:27177891-27177910 | Msa0016370:intron | 50.0% | |
| ! | ATGGGGATGTTGCTTGGACT+TGG | - | chr1_1:27177897-27177916 | Msa0016370:intron | 50.0% |
| ! | TGGGGATGTTGCTTGGACTT+GGG | - | chr1_1:27177898-27177917 | Msa0016370:intron | 50.0% |
| TATTTGCGGCGGCTGCAACT+GGG | - | chr1_1:27174368-27174387 | Msa0016370:CDS | 55.0% | |
| CTCGCTGCAGGATCTTGCTA+TGG | - | chr1_1:27174540-27174559 | Msa0016370:CDS | 55.0% | |
| ! | AAAGGAGAAGGCGCGGGTTT+CGG | + | chr1_1:27176524-27176543 | None:intergenic | 55.0% |
| AAACCCGCGCCTTCTCCTTT+GGG | - | chr1_1:27176524-27176543 | Msa0016370:intron | 55.0% | |
| GGTGGTGCATGGACTCCTAT+AGG | - | chr1_1:27177269-27177288 | Msa0016370:intron | 55.0% | |
| ATTCAGCACTAGCGACACCC+CGG | - | chr1_1:27177457-27177476 | Msa0016370:intron | 55.0% | |
| CTGTGACGGCCTTGAACACT+GGG | + | chr1_1:27177863-27177882 | None:intergenic | 55.0% | |
| ! | GGGGATGTTGCTTGGACTTG+GGG | - | chr1_1:27177899-27177918 | Msa0016370:intron | 55.0% |
| ! | TGCTTGGACTTGGGGTGCTT+TGG | - | chr1_1:27177907-27177926 | Msa0016370:intron | 55.0% |
| AGCGGTTGCGGTATTTGCGG+CGG | - | chr1_1:27174357-27174376 | Msa0016370:CDS | 60.0% | |
| GTATTTGCGGCGGCTGCAAC+TGG | - | chr1_1:27174367-27174386 | Msa0016370:CDS | 60.0% | |
| CTGAATGCTGCCAGGGGGTA+TGG | + | chr1_1:27175283-27175302 | None:intergenic | 60.0% | |
| ! | AAGGAGAAGGCGCGGGTTTC+GGG | + | chr1_1:27176523-27176542 | None:intergenic | 60.0% |
| GAAACCCGCGCCTTCTCCTT+TGG | - | chr1_1:27176523-27176542 | Msa0016370:intron | 60.0% | |
| ACCACCCAAAGGAGAAGGCG+CGG | + | chr1_1:27176531-27176550 | None:intergenic | 60.0% | |
| CAGCAAATGCGGGTGGTGCA+TGG | - | chr1_1:27177258-27177277 | Msa0016370:intron | 60.0% | |
| CCTGTGACGGCCTTGAACAC+TGG | + | chr1_1:27177864-27177883 | None:intergenic | 60.0% | |
| CCAGTGTTCAAGGCCGTCAC+AGG | - | chr1_1:27177861-27177880 | Msa0016370:intron | 60.0% | |
| ! | CCACCCAAAGGAGAAGGCGC+GGG | + | chr1_1:27176530-27176549 | None:intergenic | 65.0% |
| GGCGGCTGCAACTGGGACAG+TGG | - | chr1_1:27174375-27174394 | Msa0016370:CDS | 70.0% | |
| CCCGCGCCTTCTCCTTTGGG+TGG | - | chr1_1:27176527-27176546 | Msa0016370:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 27174349 | 27178061 | 27174349 | ID=Msa0016370;Name=Msa0016370 |
| chr1_1 | mRNA | 27174349 | 27178061 | 27174349 | ID=Msa0016370-mRNA-1;Parent=Msa0016370;Name=Msa0016370-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0|0|0|1|0.83|0.71|7|0|328 |
| chr1_1 | exon | 27177981 | 27178061 | 27177981 | ID=Msa0016370-mRNA-1:exon:9203;Parent=Msa0016370-mRNA-1 |
| chr1_1 | exon | 27177732 | 27177860 | 27177732 | ID=Msa0016370-mRNA-1:exon:9202;Parent=Msa0016370-mRNA-1 |
| chr1_1 | exon | 27175862 | 27176038 | 27175862 | ID=Msa0016370-mRNA-1:exon:9201;Parent=Msa0016370-mRNA-1 |
| chr1_1 | exon | 27175416 | 27175522 | 27175416 | ID=Msa0016370-mRNA-1:exon:9200;Parent=Msa0016370-mRNA-1 |
| chr1_1 | exon | 27175058 | 27175178 | 27175058 | ID=Msa0016370-mRNA-1:exon:9199;Parent=Msa0016370-mRNA-1 |
| chr1_1 | exon | 27174772 | 27174833 | 27174772 | ID=Msa0016370-mRNA-1:exon:9198;Parent=Msa0016370-mRNA-1 |
| chr1_1 | exon | 27174349 | 27174658 | 27174349 | ID=Msa0016370-mRNA-1:exon:9197;Parent=Msa0016370-mRNA-1 |
| chr1_1 | CDS | 27177981 | 27178061 | 27177981 | ID=Msa0016370-mRNA-1:cds;Parent=Msa0016370-mRNA-1 |
| chr1_1 | CDS | 27177732 | 27177860 | 27177732 | ID=Msa0016370-mRNA-1:cds;Parent=Msa0016370-mRNA-1 |
| chr1_1 | CDS | 27175862 | 27176038 | 27175862 | ID=Msa0016370-mRNA-1:cds;Parent=Msa0016370-mRNA-1 |
| chr1_1 | CDS | 27175416 | 27175522 | 27175416 | ID=Msa0016370-mRNA-1:cds;Parent=Msa0016370-mRNA-1 |
| chr1_1 | CDS | 27175058 | 27175178 | 27175058 | ID=Msa0016370-mRNA-1:cds;Parent=Msa0016370-mRNA-1 |
| chr1_1 | CDS | 27174772 | 27174833 | 27174772 | ID=Msa0016370-mRNA-1:cds;Parent=Msa0016370-mRNA-1 |
| chr1_1 | CDS | 27174349 | 27174658 | 27174349 | ID=Msa0016370-mRNA-1:cds;Parent=Msa0016370-mRNA-1 |
| Gene Sequence |
| Protein sequence |
