AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459130 MtrunA17_Chr8g0380251 94.947 376 16 1 1 376 1 373 0.0 728
Msa1459130 MtrunA17_Chr1g0186021 32.157 255 161 6 101 348 121 370 5.03e-35 134
Msa1459130 MtrunA17_Chr1g0173891 30.242 248 159 5 138 376 13 255 3.03e-33 127
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459130 AT5G46390.1 61.318 349 116 3 43 374 49 395 1.54e-148 427
Msa1459130 AT5G46390.2 61.254 351 117 3 43 376 49 397 5.74e-148 428
Msa1459130 AT3G57680.1 26.744 344 221 7 43 376 79 401 5.52e-33 129
Msa1459130 AT4G17740.1 31.373 255 163 6 101 348 133 382 7.34e-33 129
Msa1459130 AT4G17740.2 31.373 255 163 6 101 348 123 372 9.11e-33 129
Msa1459130 AT3G57680.3 28.514 249 165 5 138 376 7 252 7.28e-28 113
Msa1459130 AT3G57680.2 28.514 249 165 5 138 376 7 252 7.28e-28 113

Find 153 sgRNAs with CRISPR-Local

Find 320 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTATACCTGGAAGTTTC+TGG 0.170732 tig0040065:+8759 None:intergenic
CATGCAGGAGTTCGTATTTA+AGG 0.185407 tig0040065:-8212 Msa1459130:three_prime_UTR
ACATGACATTGTCAAATTAT+TGG 0.192213 tig0040065:-8016 Msa1459130:three_prime_UTR
CGGAACATCTGTGACTATTC+AGG 0.254157 tig0040065:-10972 Msa1459130:intron
GAAAGCTTAGTGGGAATAAT+TGG 0.279646 tig0040065:+12818 None:intergenic
GAAGGTATTGGGATTAATAT+TGG 0.289827 tig0040065:-11355 Msa1459130:CDS
TGCGGATTCTTTACCCTTGC+TGG 0.291686 tig0040065:+8326 None:intergenic
TTCCGTTAGGGCCTTGCAAC+AGG 0.291802 tig0040065:+10990 None:intergenic
AAACAACAGCTTGCTGGAAC+TGG 0.294485 tig0040065:+9424 None:intergenic
AAGAGAGGAGATTAGGAAAT+CGG 0.296703 tig0040065:+9299 None:intergenic
GTTAATAACACAGAGGTAAA+TGG 0.308388 tig0040065:-11037 Msa1459130:CDS
AATGATGACTTTCTTGATAC+TGG 0.317286 tig0040065:-12578 Msa1459130:CDS
CCAAAGCACAAGGACATAAA+TGG 0.324637 tig0040065:-8803 Msa1459130:three_prime_UTR
AAGCTTTGCAATTTCAATTC+CGG 0.328383 tig0040065:+10072 None:intergenic
TTACCGTGTCTCCTTCGTTT+AGG 0.341822 tig0040065:+10047 None:intergenic
GAAAGTGGTGCTGCTCATAT+TGG 0.341972 tig0040065:-10760 Msa1459130:CDS
GGTGAAAGAAAACGTGTATA+AGG 0.347877 tig0040065:+12000 None:intergenic
CAAGCGAATGCTGACCAGTT+TGG 0.349414 tig0040065:-12028 Msa1459130:CDS
CCTGACTTCCAGAAACTTCC+AGG 0.357007 tig0040065:-8767 Msa1459130:intron
AGGGAAGTTACGGATGAAAA+TGG 0.361071 tig0040065:-11390 Msa1459130:CDS
CTCAACATCACGGCATGTTT+CGG 0.366378 tig0040065:+12679 None:intergenic
CCATTTATGTCCTTGTGCTT+TGG 0.367073 tig0040065:+8803 None:intergenic
AAGCGAATGCTGACCAGTTT+GGG 0.376696 tig0040065:-12027 Msa1459130:CDS
CTGGTATTGGAATAAACCTT+AGG 0.384790 tig0040065:-11410 Msa1459130:CDS
CTTGCAACTACACTCTCCTT+TGG 0.384978 tig0040065:-12779 Msa1459130:CDS
AGAGAGGAGATTAGGAAATC+GGG 0.386696 tig0040065:+9300 None:intergenic
GACCATAGGCTGAAGGTATT+GGG 0.393402 tig0040065:-11366 Msa1459130:CDS
TGAACTTCAATTGATTCAAC+AGG 0.393542 tig0040065:+10832 None:intergenic
AGACCATAGGCTGAAGGTAT+TGG 0.393937 tig0040065:-11367 Msa1459130:CDS
TGCCTTTGACCTTGTCTGAA+TGG 0.396329 tig0040065:+12062 None:intergenic
TACCAATGAAGGACTTGTTC+AGG 0.398498 tig0040065:-12618 Msa1459130:CDS
GAGGAAGTAGAGAGAGGGAT+TGG 0.399045 tig0040065:+12701 None:intergenic
TATCCGAAACAACAGCTTGC+TGG 0.404299 tig0040065:+9418 None:intergenic
TACAGTATGTCGTTGTTTAG+TGG 0.410190 tig0040065:-9223 Msa1459130:three_prime_UTR
TCATGTATTCATATATCAAT+AGG 0.413227 tig0040065:+8033 None:intergenic
TAGTAATACTTAACTAATAT+AGG 0.420478 tig0040065:-8158 Msa1459130:three_prime_UTR
TTCCTGAACAAGTCCTTCAT+TGG 0.422208 tig0040065:+12616 None:intergenic
CTTGAAGCTCAAATACAGAT+TGG 0.425182 tig0040065:+8867 None:intergenic
GTTCCAGCAAGCTGTTGTTT+CGG 0.436242 tig0040065:-9421 Msa1459130:CDS
CTGGTGTGGTTATAACTGTT+GGG 0.440327 tig0040065:-8838 Msa1459130:three_prime_UTR
GACGGTCCTGCTCATTCTGC+TGG 0.446334 tig0040065:-11333 Msa1459130:CDS
TGGTCGCAACCGTTGGTCTC+AGG 0.446965 tig0040065:-12558 Msa1459130:CDS
CCTGGAAGTTTCTGGAAGTC+AGG 0.447399 tig0040065:+8767 None:intergenic
TGCTTCTGGTCTTCCAGCAA+GGG 0.449334 tig0040065:-8339 Msa1459130:three_prime_UTR
CCAATGCATTGAACTCTTTG+AGG 0.452389 tig0040065:+10728 None:intergenic
TCTGGTGTGGTTATAACTGT+TGG 0.453331 tig0040065:-8839 Msa1459130:three_prime_UTR
CATGTCATACCTCGCCATCT+TGG 0.454892 tig0040065:+11434 None:intergenic
GTAGAGAGAGGGATTGGAAG+AGG 0.456800 tig0040065:+12707 None:intergenic
CCTTCATTGGTAACAACCTC+AGG 0.460247 tig0040065:+12629 None:intergenic
TGAAGTTCAGCGGCAATTTG+TGG 0.460683 tig0040065:-10818 Msa1459130:CDS
AAGTTGCTTCAGTTATGCTC+TGG 0.460865 tig0040065:+8187 None:intergenic
TGAAGAGCAGATGCAGAAGA+AGG 0.463218 tig0040065:+12737 None:intergenic
AACAACAGCTTGCTGGAACT+GGG 0.463806 tig0040065:+9425 None:intergenic
AAAGTGGTGCTGCTCATATT+GGG 0.464184 tig0040065:-10759 Msa1459130:CDS
CACTTTCAGTTTGTTCCATA+CGG 0.469501 tig0040065:+10776 None:intergenic
TTGCTTCTGGTCTTCCAGCA+AGG 0.470311 tig0040065:-8340 Msa1459130:three_prime_UTR
AGGTATGACATGACTGGTAT+TGG 0.470655 tig0040065:-11423 Msa1459130:CDS
ATCCCAATACCTTCAGCCTA+TGG 0.471410 tig0040065:+11364 None:intergenic
TTGGATCTTAGAGATAATCT+TGG 0.473432 tig0040065:-10570 Msa1459130:CDS
CTCGTTGGAAAACGCACGTA+TGG 0.473888 tig0040065:-8986 Msa1459130:three_prime_UTR
TGTATAAGGATCGCCCAAAC+TGG 0.475811 tig0040065:+12014 None:intergenic
ACAACAGCTTGCTGGAACTG+GGG 0.481816 tig0040065:+9426 None:intergenic
AATAAACCTTAGGGAAGTTA+CGG 0.481828 tig0040065:-11400 Msa1459130:CDS
TGGGGTGTTGAAAGTATTGT+TGG 0.482845 tig0040065:+12866 None:intergenic
AGCAGATGCAGAAGAAGGGA+AGG 0.488126 tig0040065:+12742 None:intergenic
ATAGTCACAGATGTTCCGTT+AGG 0.490282 tig0040065:+10977 None:intergenic
AAGGACTTGTTCAGGAAGCT+TGG 0.491839 tig0040065:-12610 Msa1459130:CDS
CCTGAGGTTGTTACCAATGA+AGG 0.492506 tig0040065:-12629 Msa1459130:CDS
TTGATACTGGTCGCAACCGT+TGG 0.494736 tig0040065:-12565 Msa1459130:CDS
AAGATCCAATACAAAATATG+AGG 0.497184 tig0040065:+10584 None:intergenic
TCTGTATTTGAGCTTCAAGA+TGG 0.497337 tig0040065:-8863 Msa1459130:three_prime_UTR
TTGCAAGGAGGGTGTTGTGA+AGG 0.501563 tig0040065:+12795 None:intergenic
TCATTCTGCTGGTGTCAGAC+AGG 0.502702 tig0040065:-11322 Msa1459130:intron
TGATAGGTCATCTACACTGC+TGG 0.503687 tig0040065:-9456 Msa1459130:intron
ATGAGATGAATGAGAGGCTA+TGG 0.504700 tig0040065:-13111 Msa1459130:five_prime_UTR
TTTGAGCTTCAAGATGGGTC+TGG 0.505669 tig0040065:-8857 Msa1459130:three_prime_UTR
TAATCTTGGTGGGCTAGTGC+AGG 0.505943 tig0040065:-10556 Msa1459130:intron
TGCAAGGAGGGTGTTGTGAA+GGG 0.514883 tig0040065:+12796 None:intergenic
ATAGACACATAACACAAGAT+TGG 0.515667 tig0040065:-8258 Msa1459130:three_prime_UTR
GAGAGAGGGATTGGAAGAGG+AGG 0.520963 tig0040065:+12710 None:intergenic
TGGTATTGGAATAAACCTTA+GGG 0.523685 tig0040065:-11409 Msa1459130:CDS
AGAGCATAACTGAAGCAACT+TGG 0.524493 tig0040065:-8185 Msa1459130:three_prime_UTR
TGTTGAAAGTATTGTTGGAG+TGG 0.527937 tig0040065:+12871 None:intergenic
GAAGAATGGATTACCTCCTC+AGG 0.528232 tig0040065:+11979 None:intergenic
TTGTGAAGGGAAAGCTTAGT+GGG 0.528461 tig0040065:+12809 None:intergenic
GTTGTGAAGGGAAAGCTTAG+TGG 0.530687 tig0040065:+12808 None:intergenic
TGTTCCATACGGTAAGAGAC+TGG 0.531186 tig0040065:+10787 None:intergenic
AGGGTAAAGAATCCGCATGC+TGG 0.531498 tig0040065:-8320 Msa1459130:three_prime_UTR
GCTCGAAAAGATTTAGTCAT+CGG 0.531541 tig0040065:-10706 Msa1459130:intron
ACCGTTGGTCTCAGGATACC+TGG 0.531650 tig0040065:-12550 Msa1459130:CDS
GGAGAGTGTAGTTGCAAGGA+GGG 0.531892 tig0040065:+12784 None:intergenic
ACAAGAGGAGCACGGATCAA+TGG 0.532220 tig0040065:+9390 None:intergenic
CAAGGATAAAACAGTTTCTA+CGG 0.535630 tig0040065:-8382 Msa1459130:three_prime_UTR
GATCTTAGAGATAATCTTGG+TGG 0.537887 tig0040065:-10567 Msa1459130:CDS
TTTCATCCGTAACTTCCCTA+AGG 0.542168 tig0040065:+11394 None:intergenic
CAGATGCAGAAGAAGGGAAG+GGG 0.543799 tig0040065:+12744 None:intergenic
CCTCAAAGAGTTCAATGCAT+TGG 0.545821 tig0040065:-10728 Msa1459130:CDS
CCTCACTATTTCACTAGCAC+TGG 0.547376 tig0040065:+9125 None:intergenic
TAGTCACAGATGTTCCGTTA+GGG 0.547770 tig0040065:+10978 None:intergenic
GGAGTGGTGGAGAGTGATGA+AGG 0.547929 tig0040065:+12887 None:intergenic
ATCTTAGAGATAATCTTGGT+GGG 0.549550 tig0040065:-10566 Msa1459130:CDS
CACAGTTCCAACTGCTCCTG+AGG 0.549791 tig0040065:-12645 Msa1459130:CDS
AATTGTCGAGCTGTTCTCGT+TGG 0.550446 tig0040065:-9001 Msa1459130:three_prime_UTR
CGTATGGAACAAACTGAAAG+TGG 0.551046 tig0040065:-10775 Msa1459130:CDS
AGATGCAGAAGAAGGGAAGG+GGG 0.555276 tig0040065:+12745 None:intergenic
CACACCAGTCTCTTACCGTA+TGG 0.556124 tig0040065:-10791 Msa1459130:CDS
AGCTCAAGCATGGAAACTGT+GGG 0.565529 tig0040065:-10855 Msa1459130:CDS
CGTTGTTGTCAGCTCAAGCA+TGG 0.565807 tig0040065:-10865 Msa1459130:intron
TCCCTGTTGCAAGGCCCTAA+CGG 0.566724 tig0040065:-10992 Msa1459130:CDS
TGGAAAACGCACGTATGGCA+AGG 0.572643 tig0040065:-8981 Msa1459130:intron
CTGTATTTGAGCTTCAAGAT+GGG 0.577139 tig0040065:-8862 Msa1459130:three_prime_UTR
GCAGATGCAGAAGAAGGGAA+GGG 0.577572 tig0040065:+12743 None:intergenic
GTAACAACCTCAGGAGCAGT+TGG 0.578338 tig0040065:+12638 None:intergenic
CAGCTCAAGCATGGAAACTG+TGG 0.578820 tig0040065:-10856 Msa1459130:CDS
ACACATAACACAAGATTGGT+AGG 0.581055 tig0040065:-8254 Msa1459130:three_prime_UTR
GAACATTGATGATACCTGCC+AGG 0.586445 tig0040065:+12532 None:intergenic
GAAGTATCATCCCTGTTGCA+AGG 0.589347 tig0040065:-11001 Msa1459130:CDS
TAACTAGATTAAATTAAACT+CGG 0.590035 tig0040065:-13037 Msa1459130:five_prime_UTR
ATACTTAACTAATATAGGAA+AGG 0.590073 tig0040065:-8153 Msa1459130:three_prime_UTR
TGAAAGTATTGTTGGAGTGG+TGG 0.590643 tig0040065:+12874 None:intergenic
TTCCATTCAGACAAGGTCAA+AGG 0.593150 tig0040065:-12064 Msa1459130:CDS
GAAGAGCAGATGCAGAAGAA+GGG 0.595058 tig0040065:+12738 None:intergenic
TTGGTCTCAGGATACCTGGC+AGG 0.596168 tig0040065:-12546 Msa1459130:intron
CAAAGGAGAGTGTAGTTGCA+AGG 0.596188 tig0040065:+12780 None:intergenic
AGTAATCTAAGAAAGCATGC+AGG 0.596941 tig0040065:-8227 Msa1459130:three_prime_UTR
CAACAGCTTGCTGGAACTGG+GGG 0.597395 tig0040065:+9427 None:intergenic
CTGACACCAGCAGAATGAGC+AGG 0.598327 tig0040065:+11327 None:intergenic
GTATTGGGATTAATATTGGA+CGG 0.602411 tig0040065:-11351 Msa1459130:CDS
ATGGCGAGGTATGACATGAC+TGG 0.602836 tig0040065:-11429 Msa1459130:CDS
TTTCGGAGGAAGTAGAGAGA+GGG 0.615323 tig0040065:+12696 None:intergenic
TTGAATCAATTGAAGTTCAG+CGG 0.615959 tig0040065:-10828 Msa1459130:CDS
AACATCACGGCATGTTTCGG+AGG 0.617397 tig0040065:+12682 None:intergenic
ATGCATTGAACTCTTTGAGG+CGG 0.622366 tig0040065:+10731 None:intergenic
CACAAGGACATAAATGGCAA+CGG 0.622455 tig0040065:-8797 Msa1459130:three_prime_UTR
TCCGTTAGGGCCTTGCAACA+GGG 0.624845 tig0040065:+10991 None:intergenic
AAAAGTTCTCCAAGATGGCG+AGG 0.627849 tig0040065:-11443 Msa1459130:intron
GTTTCGGAGGAAGTAGAGAG+AGG 0.629848 tig0040065:+12695 None:intergenic
TTTCCTAAACGAAGGAGACA+CGG 0.632678 tig0040065:-10050 Msa1459130:intron
ACATGGCAGCTTCCAGCATG+CGG 0.635420 tig0040065:+8308 None:intergenic
AAATGGAGACCATAGGCTGA+AGG 0.637284 tig0040065:-11373 Msa1459130:CDS
GCTTCAAGATGGGTCTGGTG+TGG 0.637950 tig0040065:-8852 Msa1459130:three_prime_UTR
TGAGCAATTCCATTCAGACA+AGG 0.642285 tig0040065:-12071 Msa1459130:CDS
AATGAAGCGACTTCAAGACA+TGG 0.646610 tig0040065:-10610 Msa1459130:CDS
GTATGTAACACCAAAGCACA+AGG 0.647978 tig0040065:-8813 Msa1459130:three_prime_UTR
AGGAGAGTGTAGTTGCAAGG+AGG 0.651687 tig0040065:+12783 None:intergenic
AAATGCAGTATGCTTCAGCA+AGG 0.653675 tig0040065:-8400 Msa1459130:three_prime_UTR
GCAGTAATGAGATGAATGAG+AGG 0.659301 tig0040065:-13117 Msa1459130:five_prime_UTR
CGGATGAAAATGGAGACCAT+AGG 0.660391 tig0040065:-11380 Msa1459130:CDS
GCCAGGTATCCTGAGACCAA+CGG 0.663215 tig0040065:+12549 None:intergenic
TATCTCGAAGCTCAACATCA+CGG 0.666685 tig0040065:+12669 None:intergenic
ATGAAGCGACTTCAAGACAT+GGG 0.671799 tig0040065:-10609 Msa1459130:CDS
GCAGAAAGAAGATGAATGTG+TGG 0.715352 tig0040065:-12916 Msa1459130:exon
ATTGGCAGTTAATAACACAG+AGG 0.766028 tig0040065:-11044 Msa1459130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATGAATTTTTATTATGT+GGG - tig0040065:8700-8719 Msa1459130:intron 10.0%
!! AAAAATGAAAAAAATAAAAG+AGG + tig0040065:13080-13099 None:intergenic 10.0%
!! TAACTAGATTAAATTAAACT+CGG - tig0040065:8125-8144 Msa1459130:three_prime_UTR 15.0%
!! CATAATAAAAATTCATAAAC+TGG + tig0040065:8699-8718 None:intergenic 15.0%
!!! GTTTATGAATTTTTATTATG+TGG - tig0040065:8699-8718 Msa1459130:intron 15.0%
!! CTGAAAACAAAAAATTATTA+GGG + tig0040065:9924-9943 None:intergenic 15.0%
!! ACTGAAAACAAAAAATTATT+AGG + tig0040065:9925-9944 None:intergenic 15.0%
!! ATACAATTATATTAACATCA+GGG + tig0040065:9952-9971 None:intergenic 15.0%
!! AATACAATTATATTAACATC+AGG + tig0040065:9953-9972 None:intergenic 15.0%
!!! ACTATATGTTTTAACATTTT+CGG - tig0040065:9985-10004 Msa1459130:intron 15.0%
!! ATAATAGAGTATATTAATTC+TGG - tig0040065:11467-11486 Msa1459130:intron 15.0%
!! TAATAGAGTATATTAATTCT+GGG - tig0040065:11468-11487 Msa1459130:intron 15.0%
!!! TAATTTTTCTCTTTGTAAAA+TGG - tig0040065:12208-12227 Msa1459130:intron 15.0%
!!! AAATTTTTGAGATATATACA+TGG + tig0040065:12874-12893 None:intergenic 15.0%
!! TAGTAATACTTAACTAATAT+AGG - tig0040065:13004-13023 Msa1459130:five_prime_UTR 15.0%
!!! AAAATGCAAAATTTTGATGT+GGG + tig0040065:8657-8676 None:intergenic 20.0%
!!! AAAAATGCAAAATTTTGATG+TGG + tig0040065:8658-8677 None:intergenic 20.0%
!!! AATTTTTATTATGTGGGTTT+TGG - tig0040065:8706-8725 Msa1459130:intron 20.0%
!! CACTTTATAATTCATATTGA+AGG - tig0040065:8827-8846 Msa1459130:three_prime_UTR 20.0%
!!! TTTTATTTGTTTCTTGGTTA+GGG - tig0040065:10086-10105 Msa1459130:intron 20.0%
!! TTAACGTTCATGTTTAATAT+TGG - tig0040065:10271-10290 Msa1459130:intron 20.0%
!! TTCGTTATATGAAAAAGAAA+AGG + tig0040065:10837-10856 None:intergenic 20.0%
!! TACATTGTGTAAAACATTAT+TGG - tig0040065:11183-11202 Msa1459130:intron 20.0%
!! ATTGAAGACAATAAAATTCA+AGG + tig0040065:11302-11321 None:intergenic 20.0%
!! TATTTATGTTAGACATTTAC+TGG - tig0040065:11388-11407 Msa1459130:CDS 20.0%
!! TGATATATTCGATTAAATGT+TGG - tig0040065:11554-11573 Msa1459130:intron 20.0%
!!! GTTGATTTCTTTTTTACTAT+AGG - tig0040065:11576-11595 Msa1459130:intron 20.0%
!! TGTAAAAAAAATTCAGATGT+AGG + tig0040065:11811-11830 None:intergenic 20.0%
!!! TGATTGATTATTTTCTTTCA+GGG - tig0040065:12266-12285 Msa1459130:intron 20.0%
!! TAAAAAAACACAATTATACC+TGG + tig0040065:12416-12435 None:intergenic 20.0%
!! ACGACAATAATTTGAAAAAA+TGG - tig0040065:12548-12567 Msa1459130:CDS 20.0%
!! ATACTTAACTAATATAGGAA+AGG - tig0040065:13009-13028 Msa1459130:five_prime_UTR 20.0%
!! CTACATAAAAATGTAAAACA+AGG + tig0040065:13038-13057 None:intergenic 20.0%
!! ATGAAAAAAATAAAAGAGGA+AGG + tig0040065:13076-13095 None:intergenic 20.0%
!! TCATGTATTCATATATCAAT+AGG + tig0040065:13132-13151 Msa1459140:five_prime_UTR 20.0%
!!! CTTTAAGTTGGTAAAGTAAT+GGG + tig0040065:8751-8770 None:intergenic 25.0%
!!! ACTTTAAGTTGGTAAAGTAA+TGG + tig0040065:8752-8771 None:intergenic 25.0%
! CACTATTGAAAATTGAAGAA+TGG + tig0040065:9200-9219 None:intergenic 25.0%
! ATTAGATGTTTATGCCTTAT+GGG - tig0040065:9248-9267 Msa1459130:three_prime_UTR 25.0%
! AAAAAAATTCATCTGCATTG+CGG - tig0040065:9346-9365 Msa1459130:CDS 25.0%
! TAGATGTCTCATGATAATAT+AGG + tig0040065:9531-9550 None:intergenic 25.0%
! GTTTCTTACTTAATGGTATA+TGG - tig0040065:9680-9699 Msa1459130:intron 25.0%
!!! TGTTTTAACATTTTCGGTAT+AGG - tig0040065:9991-10010 Msa1459130:intron 25.0%
!!! TCTTGCTTTTATTTGTTTCT+TGG - tig0040065:10080-10099 Msa1459130:intron 25.0%
!!! CTTTTATTTGTTTCTTGGTT+AGG - tig0040065:10085-10104 Msa1459130:intron 25.0%
!! TTTATTTGTTTCTTGGTTAG+GGG - tig0040065:10087-10106 Msa1459130:intron 25.0%
! CGTTAAAAAACTAAAAGCAA+AGG + tig0040065:10257-10276 None:intergenic 25.0%
!!! TCTTTGTTTTTGCTTTCTTA+CGG - tig0040065:10500-10519 Msa1459130:intron 25.0%
! AAGATCCAATACAAAATATG+AGG + tig0040065:10581-10600 None:intergenic 25.0%
! AAAATGAAGATAAACGCATA+AGG - tig0040065:10723-10742 Msa1459130:CDS 25.0%
! GAAAAGGAAAAAGAAAAGAT+GGG + tig0040065:10821-10840 None:intergenic 25.0%
! AGAAAAGGAAAAAGAAAAGA+TGG + tig0040065:10822-10841 None:intergenic 25.0%
!! AATTGAAGAAATACTGACTA+TGG + tig0040065:10914-10933 None:intergenic 25.0%
!! TTTTCCTTAAAATGTGATGT+TGG - tig0040065:11257-11276 Msa1459130:intron 25.0%
! CATTTCTCCACTAATAATAT+TGG - tig0040065:11336-11355 Msa1459130:CDS 25.0%
! CATTCAAATAAGAAAAAGAG+AGG + tig0040065:11881-11900 None:intergenic 25.0%
! GTTCATGTTATACTTATTTC+AGG - tig0040065:12118-12137 Msa1459130:intron 25.0%
!! CTGATTGATTATTTTCTTTC+AGG - tig0040065:12265-12284 Msa1459130:intron 25.0%
! TTCACAGTCAAATTGTAATA+TGG - tig0040065:12677-12696 Msa1459130:CDS 25.0%
! ACATGACATTGTCAAATTAT+TGG - tig0040065:13146-13165 Msa1459130:five_prime_UTR 25.0%
TAGTTATCAGCAAAAAATGC+TGG + tig0040065:8111-8130 None:intergenic 30.0%
! AAGATGATGATGATGATGAT+GGG + tig0040065:8318-8337 None:intergenic 30.0%
AATGATGACTTTCTTGATAC+TGG - tig0040065:8584-8603 Msa1459130:intron 30.0%
TAAAGCAGCAAACTTTAAGT+TGG + tig0040065:8763-8782 None:intergenic 30.0%
ATGTGATTATGTCTATGTGT+CGG - tig0040065:8925-8944 Msa1459130:intron 30.0%
!!! TCATTGATGTTGTTTTTGTG+TGG - tig0040065:9012-9031 Msa1459130:three_prime_UTR 30.0%
CATTAGATGTTTATGCCTTA+TGG - tig0040065:9247-9266 Msa1459130:three_prime_UTR 30.0%
AACACTGTCATATACAACTA+AGG - tig0040065:9315-9334 Msa1459130:three_prime_UTR 30.0%
GCAAAACAAGCAATAGTAAA+TGG + tig0040065:9598-9617 None:intergenic 30.0%
TTCTCGTGTTTCTTACTTAA+TGG - tig0040065:9673-9692 Msa1459130:intron 30.0%
!! CTTTTAAAAGTTCTCCAAGA+TGG - tig0040065:9714-9733 Msa1459130:intron 30.0%
! TGGTATTGGAATAAACCTTA+GGG - tig0040065:9753-9772 Msa1459130:intron 30.0%
AATAAACCTTAGGGAAGTTA+CGG - tig0040065:9762-9781 Msa1459130:intron 30.0%
!! GAAGGTATTGGGATTAATAT+TGG - tig0040065:9807-9826 Msa1459130:intron 30.0%
GTATTGGGATTAATATTGGA+CGG - tig0040065:9811-9830 Msa1459130:intron 30.0%
!! GAAGATTTTTGAAAATGAGC+AGG + tig0040065:10051-10070 None:intergenic 30.0%
! TTATTTGTTTCTTGGTTAGG+GGG - tig0040065:10088-10107 Msa1459130:intron 30.0%
GTTAATAACACAGAGGTAAA+TGG - tig0040065:10125-10144 Msa1459130:intron 30.0%
ATTCTGATTCCAAGTTAGTT+TGG - tig0040065:10219-10238 Msa1459130:intron 30.0%
! TGAACTTCAATTGATTCAAC+AGG + tig0040065:10333-10352 None:intergenic 30.0%
TTGAATCAATTGAAGTTCAG+CGG - tig0040065:10334-10353 Msa1459130:intron 30.0%
TTGGATCTTAGAGATAATCT+TGG - tig0040065:10592-10611 Msa1459130:CDS 30.0%
ATCTTAGAGATAATCTTGGT+GGG - tig0040065:10596-10615 Msa1459130:CDS 30.0%
TTCAAAGCAGAAACTAAGAA+TGG + tig0040065:10661-10680 None:intergenic 30.0%
TGGGAAAACAAAAACAATCT+TGG + tig0040065:10802-10821 None:intergenic 30.0%
GTTACATTCAATACAACACA+TGG + tig0040065:11010-11029 None:intergenic 30.0%
!!! TTTGCCCTTTTAATTTTTGC+AGG - tig0040065:11067-11086 Msa1459130:intron 30.0%
AAGCTTTGCAATTTCAATTC+CGG + tig0040065:11093-11112 None:intergenic 30.0%
! GTTTTACACAATGTATGCTT+TGG + tig0040065:11178-11197 None:intergenic 30.0%
TGTGTAAAACATTATTGGAG+AGG - tig0040065:11188-11207 Msa1459130:intron 30.0%
CATGAGACCAATATTATTAG+TGG + tig0040065:11346-11365 None:intergenic 30.0%
TGTTTAGTAGATAACCAGTT+AGG - tig0040065:11527-11546 Msa1459130:intron 30.0%
GAATATATCATCATCCTAAC+TGG + tig0040065:11544-11563 None:intergenic 30.0%
GTTAAAATTGACTGCTATCT+TGG - tig0040065:11609-11628 Msa1459130:intron 30.0%
!!! TCTTCAACTGTTGTTTTCAA+TGG - tig0040065:11639-11658 Msa1459130:intron 30.0%
!!! CTGTTGTTTTCAATGGATTT+TGG - tig0040065:11646-11665 Msa1459130:intron 30.0%
GTTTCTAATGTCATCATGAT+AGG - tig0040065:11690-11709 Msa1459130:intron 30.0%
! GGAAAAACTTTTACAACAAG+AGG + tig0040065:11790-11809 None:intergenic 30.0%
TAAGAAAAAGAGAGGAGATT+AGG + tig0040065:11873-11892 None:intergenic 30.0%
AATAATCAATCAGTACAGCT+TGG + tig0040065:12258-12277 None:intergenic 30.0%
!! TACTGCATTTTGAAAGATGT+TGG + tig0040065:12752-12771 None:intergenic 30.0%
CAAGGATAAAACAGTTTCTA+CGG - tig0040065:12780-12799 Msa1459130:CDS 30.0%
ATAGACACATAACACAAGAT+TGG - tig0040065:12904-12923 Msa1459130:CDS 30.0%
!! TGTTGAAAGTATTGTTGGAG+TGG + tig0040065:8294-8313 None:intergenic 35.0%
! AGATGATGATGATGATGATG+GGG + tig0040065:8317-8336 None:intergenic 35.0%
! GAAGATGATGATGATGATGA+TGG + tig0040065:8319-8338 None:intergenic 35.0%
GAAAGCTTAGTGGGAATAAT+TGG + tig0040065:8347-8366 None:intergenic 35.0%
TATTGCTAGCTAAGTAGCTT+AGG - tig0040065:8788-8807 Msa1459130:three_prime_UTR 35.0%
!!! TTGATGTTGTTTTTGTGTGG+TGG - tig0040065:9015-9034 Msa1459130:three_prime_UTR 35.0%
GGTGAAAGAAAACGTGTATA+AGG + tig0040065:9165-9184 None:intergenic 35.0%
!! TTTTCAATAGTGTTGCTCTG+TGG - tig0040065:9208-9227 Msa1459130:three_prime_UTR 35.0%
!! CAATTTACGCCATGTTTTAG+GGG + tig0040065:9460-9479 None:intergenic 35.0%
! CCAATTTACGCCATGTTTTA+GGG + tig0040065:9461-9480 None:intergenic 35.0%
! CTGGTATTGGAATAAACCTT+AGG - tig0040065:9752-9771 Msa1459130:intron 35.0%
ATTGGCAGTTAATAACACAG+AGG - tig0040065:10118-10137 Msa1459130:intron 35.0%
!! ATCTGTGACTATTCAGGTTT+TGG - tig0040065:10196-10215 Msa1459130:intron 35.0%
! CACTTTCAGTTTGTTCCATA+CGG + tig0040065:10389-10408 None:intergenic 35.0%
GCTCGAAAAGATTTAGTCAT+CGG - tig0040065:10456-10475 Msa1459130:intron 35.0%
GATCTTAGAGATAATCTTGG+TGG - tig0040065:10595-10614 Msa1459130:CDS 35.0%
AAGAATGGTATAGGTAGACA+GGG + tig0040065:10646-10665 None:intergenic 35.0%
TAAGAATGGTATAGGTAGAC+AGG + tig0040065:10647-10666 None:intergenic 35.0%
GCAGAAACTAAGAATGGTAT+AGG + tig0040065:10655-10674 None:intergenic 35.0%
ACAAATGCTCAAAGTGAATG+TGG - tig0040065:10869-10888 Msa1459130:intron 35.0%
AGGGCAAACAAAACTGAATT+AGG + tig0040065:11055-11074 None:intergenic 35.0%
TCCTTAAAATGTGATGTTGG+AGG - tig0040065:11260-11279 Msa1459130:intron 35.0%
! ACCTCCAACATCACATTTTA+AGG + tig0040065:11264-11283 None:intergenic 35.0%
TCTTCACTCTGTACAGAAAA+GGG + tig0040065:11440-11459 None:intergenic 35.0%
ATCTTCACTCTGTACAGAAA+AGG + tig0040065:11441-11460 None:intergenic 35.0%
GTGTGAGCTAATCGATAAAA+TGG - tig0040065:11490-11509 Msa1459130:intron 35.0%
AAGAGAGGAGATTAGGAAAT+CGG + tig0040065:11866-11885 None:intergenic 35.0%
TACAGTATGTCGTTGTTTAG+TGG - tig0040065:11939-11958 Msa1459130:intron 35.0%
! CTTTTTGATCTGTATCATGC+AGG - tig0040065:11993-12012 Msa1459130:CDS 35.0%
CTTGAAGCTCAAATACAGAT+TGG + tig0040065:12298-12317 None:intergenic 35.0%
TCTGTATTTGAGCTTCAAGA+TGG - tig0040065:12299-12318 Msa1459130:intron 35.0%
CTGTATTTGAGCTTCAAGAT+GGG - tig0040065:12300-12319 Msa1459130:intron 35.0%
CAATTATACCTGGAAGTTTC+TGG + tig0040065:12406-12425 None:intergenic 35.0%
ATGTAATCGAGTGTCAATGT+CGG - tig0040065:12581-12600 Msa1459130:CDS 35.0%
! CAAATGCAATCTTTTGCTTC+TGG - tig0040065:12809-12828 Msa1459130:CDS 35.0%
ACACATAACACAAGATTGGT+AGG - tig0040065:12908-12927 Msa1459130:CDS 35.0%
! AGTAATCTAAGAAAGCATGC+AGG - tig0040065:12935-12954 Msa1459130:five_prime_UTR 35.0%
GCAGTAATGAGATGAATGAG+AGG - tig0040065:8045-8064 Msa1459130:three_prime_UTR 40.0%
ATGAGATGAATGAGAGGCTA+TGG - tig0040065:8051-8070 Msa1459130:three_prime_UTR 40.0%
! AGCAAAAAATGCTGGTTACG+TGG + tig0040065:8103-8122 None:intergenic 40.0%
GCAGAAAGAAGATGAATGTG+TGG - tig0040065:8246-8265 Msa1459130:three_prime_UTR 40.0%
!! TGAAAGTATTGTTGGAGTGG+TGG + tig0040065:8291-8310 None:intergenic 40.0%
!! TGGGGTGTTGAAAGTATTGT+TGG + tig0040065:8299-8318 None:intergenic 40.0%
TTGTGAAGGGAAAGCTTAGT+GGG + tig0040065:8356-8375 None:intergenic 40.0%
TATCTCGAAGCTCAACATCA+CGG + tig0040065:8496-8515 None:intergenic 40.0%
! TACCAATGAAGGACTTGTTC+AGG - tig0040065:8544-8563 Msa1459130:intron 40.0%
TTCCTGAACAAGTCCTTCAT+TGG + tig0040065:8549-8568 None:intergenic 40.0%
!! TTTGGTTTGTAGCTTGGAGT+TGG - tig0040065:8724-8743 Msa1459130:intron 40.0%
CGAGTAAATGTCAGAGACTT+AGG + tig0040065:8857-8876 None:intergenic 40.0%
! TTATGTCTATGTGTCGGTGT+TGG - tig0040065:8931-8950 Msa1459130:intron 40.0%
!! TTTGGTGTTTGTGTCTGTGT+CGG - tig0040065:8961-8980 Msa1459130:intron 40.0%
! GTTTTTGTGTGGTGGTTAGT+TGG - tig0040065:9023-9042 Msa1459130:three_prime_UTR 40.0%
TGAGCAATTCCATTCAGACA+AGG - tig0040065:9091-9110 Msa1459130:intron 40.0%
TTCCATTCAGACAAGGTCAA+AGG - tig0040065:9098-9117 Msa1459130:intron 40.0%
! TACACGTTTTCTTTCACCTG+AGG - tig0040065:9167-9186 Msa1459130:three_prime_UTR 40.0%
AATATCAAGAATCGCGATCG+GGG + tig0040065:9289-9308 None:intergenic 40.0%
CAATATCAAGAATCGCGATC+GGG + tig0040065:9290-9309 None:intergenic 40.0%
GCAATATCAAGAATCGCGAT+CGG + tig0040065:9291-9310 None:intergenic 40.0%
TTGATCTAATACTGCAGCTG+CGG - tig0040065:9397-9416 Msa1459130:CDS 40.0%
CCCTAAAACATGGCGTAAAT+TGG - tig0040065:9458-9477 Msa1459130:intron 40.0%
! GCCAATTTACGCCATGTTTT+AGG + tig0040065:9462-9481 None:intergenic 40.0%
AATTTCCAACTCAGACGACA+CGG + tig0040065:9502-9521 None:intergenic 40.0%
! AAGAAACACGAGAAGCACAA+TGG + tig0040065:9667-9686 None:intergenic 40.0%
AGGTATGACATGACTGGTAT+TGG - tig0040065:9739-9758 Msa1459130:intron 40.0%
TTTCATCCGTAACTTCCCTA+AGG + tig0040065:9771-9790 None:intergenic 40.0%
AGGGAAGTTACGGATGAAAA+TGG - tig0040065:9772-9791 Msa1459130:intron 40.0%
GACAACTCTACCAATTCACT+CGG - tig0040065:9871-9890 Msa1459130:intron 40.0%
AAGACATTAGCCGAGTGAAT+TGG + tig0040065:9884-9903 None:intergenic 40.0%
TGGTTAGGGGGATGAAATAT+TGG - tig0040065:10100-10119 Msa1459130:intron 40.0%
TAGTCACAGATGTTCCGTTA+GGG + tig0040065:10187-10206 None:intergenic 40.0%
ATAGTCACAGATGTTCCGTT+AGG + tig0040065:10188-10207 None:intergenic 40.0%
CGTATGGAACAAACTGAAAG+TGG - tig0040065:10387-10406 Msa1459130:intron 40.0%
!! AAAGTGGTGCTGCTCATATT+GGG - tig0040065:10403-10422 Msa1459130:intron 40.0%
! ATGCATTGAACTCTTTGAGG+CGG + tig0040065:10434-10453 None:intergenic 40.0%
CCAATGCATTGAACTCTTTG+AGG + tig0040065:10437-10456 None:intergenic 40.0%
CCTCAAAGAGTTCAATGCAT+TGG - tig0040065:10434-10453 Msa1459130:intron 40.0%
AATGAAGCGACTTCAAGACA+TGG - tig0040065:10552-10571 Msa1459130:intron 40.0%
ATGAAGCGACTTCAAGACAT+GGG - tig0040065:10553-10572 Msa1459130:intron 40.0%
! GGGTGCCTCATATTTTGTAT+TGG - tig0040065:10573-10592 Msa1459130:CDS 40.0%
ATGTGTGTTCGTGCAGATTA+TGG - tig0040065:10763-10782 Msa1459130:CDS 40.0%
AGTTGTGCTCAAACATGCTT+TGG - tig0040065:10964-10983 Msa1459130:intron 40.0%
CCGGCCTGCAAAAATTAAAA+GGG + tig0040065:11074-11093 None:intergenic 40.0%
!!! CCCTTTTAATTTTTGCAGGC+CGG - tig0040065:11071-11090 Msa1459130:intron 40.0%
TCCGGCCTGCAAAAATTAAA+AGG + tig0040065:11075-11094 None:intergenic 40.0%
! GCAAAGCTTTTCCTAAACGA+AGG - tig0040065:11104-11123 Msa1459130:intron 40.0%
TTTCCTAAACGAAGGAGACA+CGG - tig0040065:11112-11131 Msa1459130:intron 40.0%
TTCACTCTGTACAGAAAAGG+GGG + tig0040065:11438-11457 None:intergenic 40.0%
CTTCACTCTGTACAGAAAAG+GGG + tig0040065:11439-11458 None:intergenic 40.0%
! CTTTTACAACAAGAGGAGCA+CGG + tig0040065:11783-11802 None:intergenic 40.0%
AGAGAGGAGATTAGGAAATC+GGG + tig0040065:11865-11884 None:intergenic 40.0%
TCTGGTGTGGTTATAACTGT+TGG - tig0040065:12323-12342 Msa1459130:intron 40.0%
CTGGTGTGGTTATAACTGTT+GGG - tig0040065:12324-12343 Msa1459130:intron 40.0%
GTATGTAACACCAAAGCACA+AGG - tig0040065:12349-12368 Msa1459130:intron 40.0%
CCATTTATGTCCTTGTGCTT+TGG + tig0040065:12362-12381 None:intergenic 40.0%
CCAAAGCACAAGGACATAAA+TGG - tig0040065:12359-12378 Msa1459130:intron 40.0%
CACAAGGACATAAATGGCAA+CGG - tig0040065:12365-12384 Msa1459130:intron 40.0%
CTTTCTTTCTCTCCTTGTCT+CGG - tig0040065:12442-12461 Msa1459130:intron 40.0%
TTTCTTTCTCTCCTTGTCTC+GGG - tig0040065:12443-12462 Msa1459130:intron 40.0%
AAATGCAGTATGCTTCAGCA+AGG - tig0040065:12762-12781 Msa1459130:CDS 40.0%
CATGCAGGAGTTCGTATTTA+AGG - tig0040065:12950-12969 Msa1459130:five_prime_UTR 40.0%
AAGTTGCTTCAGTTATGCTC+TGG + tig0040065:12978-12997 None:intergenic 40.0%
AGAGCATAACTGAAGCAACT+TGG - tig0040065:12977-12996 Msa1459130:five_prime_UTR 40.0%
GTTGTGAAGGGAAAGCTTAG+TGG + tig0040065:8357-8376 None:intergenic 45.0%
! CAAAGGAGAGTGTAGTTGCA+AGG + tig0040065:8385-8404 None:intergenic 45.0%
CTTGCAACTACACTCTCCTT+TGG - tig0040065:8383-8402 Msa1459130:three_prime_UTR 45.0%
GAAGAGCAGATGCAGAAGAA+GGG + tig0040065:8427-8446 None:intergenic 45.0%
TGAAGAGCAGATGCAGAAGA+AGG + tig0040065:8428-8447 None:intergenic 45.0%
TTTCGGAGGAAGTAGAGAGA+GGG + tig0040065:8469-8488 None:intergenic 45.0%
CTCAACATCACGGCATGTTT+CGG + tig0040065:8486-8505 None:intergenic 45.0%
! CCTTCATTGGTAACAACCTC+AGG + tig0040065:8536-8555 None:intergenic 45.0%
CCTGAGGTTGTTACCAATGA+AGG - tig0040065:8533-8552 Msa1459130:intron 45.0%
! AAGGACTTGTTCAGGAAGCT+TGG - tig0040065:8552-8571 Msa1459130:intron 45.0%
! GAACATTGATGATACCTGCC+AGG + tig0040065:8633-8652 None:intergenic 45.0%
!!! GTGGGTTTTGGTTTGTAGCT+TGG - tig0040065:8718-8737 Msa1459130:intron 45.0%
!! TGGTGGTTAGTTGGTGCTAA+TGG - tig0040065:9032-9051 Msa1459130:intron 45.0%
TGCCTTTGACCTTGTCTGAA+TGG + tig0040065:9103-9122 None:intergenic 45.0%
AAGCGAATGCTGACCAGTTT+GGG - tig0040065:9135-9154 Msa1459130:three_prime_UTR 45.0%
TGTATAAGGATCGCCCAAAC+TGG + tig0040065:9151-9170 None:intergenic 45.0%
! ACGTTTTCTTTCACCTGAGG+AGG - tig0040065:9170-9189 Msa1459130:three_prime_UTR 45.0%
!! GAAGAATGGATTACCTCCTC+AGG + tig0040065:9186-9205 None:intergenic 45.0%
! TCAATAGTGTTGCTCTGTGG+AGG - tig0040065:9211-9230 Msa1459130:three_prime_UTR 45.0%
! TTTTACCGTGTCGTCTGAGT+TGG - tig0040065:9494-9513 Msa1459130:intron 45.0%
! GTGTCGTCTGAGTTGGAAAT+TGG - tig0040065:9501-9520 Msa1459130:intron 45.0%
AAAAGTTCTCCAAGATGGCG+AGG - tig0040065:9719-9738 Msa1459130:intron 45.0%
CGGATGAAAATGGAGACCAT+AGG - tig0040065:9782-9801 Msa1459130:intron 45.0%
AAATGGAGACCATAGGCTGA+AGG - tig0040065:9789-9808 Msa1459130:intron 45.0%
! AGACCATAGGCTGAAGGTAT+TGG - tig0040065:9795-9814 Msa1459130:intron 45.0%
!! GACCATAGGCTGAAGGTATT+GGG - tig0040065:9796-9815 Msa1459130:intron 45.0%
ATCCCAATACCTTCAGCCTA+TGG + tig0040065:9801-9820 None:intergenic 45.0%
! GAAGTATCATCCCTGTTGCA+AGG - tig0040065:10161-10180 Msa1459130:intron 45.0%
CGGAACATCTGTGACTATTC+AGG - tig0040065:10190-10209 Msa1459130:intron 45.0%
CTAAAAGCAAAGGCTAGAGC+AGG + tig0040065:10247-10266 None:intergenic 45.0%
AGCTCAAGCATGGAAACTGT+GGG - tig0040065:10307-10326 Msa1459130:intron 45.0%
TGAAGTTCAGCGGCAATTTG+TGG - tig0040065:10344-10363 Msa1459130:intron 45.0%
TGTTCCATACGGTAAGAGAC+TGG + tig0040065:10378-10397 None:intergenic 45.0%
!! GAAAGTGGTGCTGCTCATAT+TGG - tig0040065:10402-10421 Msa1459130:intron 45.0%
TTACCGTGTCTCCTTCGTTT+AGG + tig0040065:11118-11137 None:intergenic 45.0%
TGATAGGTCATCTACACTGC+TGG - tig0040065:11706-11725 Msa1459130:intron 45.0%
!! AACAACAGCTTGCTGGAACT+GGG + tig0040065:11740-11759 None:intergenic 45.0%
!! AAACAACAGCTTGCTGGAAC+TGG + tig0040065:11741-11760 None:intergenic 45.0%
! GTTCCAGCAAGCTGTTGTTT+CGG - tig0040065:11741-11760 Msa1459130:intron 45.0%
TATCCGAAACAACAGCTTGC+TGG + tig0040065:11747-11766 None:intergenic 45.0%
CCTCACTATTTCACTAGCAC+TGG + tig0040065:12040-12059 None:intergenic 45.0%
CCAGTGCTAGTGAAATAGTG+AGG - tig0040065:12037-12056 Msa1459130:CDS 45.0%
AATTGTCGAGCTGTTCTCGT+TGG - tig0040065:12161-12180 Msa1459130:intron 45.0%
TTTGAGCTTCAAGATGGGTC+TGG - tig0040065:12305-12324 Msa1459130:intron 45.0%
TTCTTTCTCTCCTTGTCTCG+GGG - tig0040065:12444-12463 Msa1459130:intron 45.0%
!! AAGCATTGGAGTTGCTACCA+TGG - tig0040065:12468-12487 Msa1459130:intron 45.0%
! AGCATTGGAGTTGCTACCAT+GGG - tig0040065:12469-12488 Msa1459130:intron 45.0%
ACAATCTAGTGCTAGTCCCA+TGG + tig0040065:12488-12507 None:intergenic 45.0%
CATCCCAAGCTGCAAATACA+GGG + tig0040065:12722-12741 None:intergenic 45.0%
TCATCCCAAGCTGCAAATAC+AGG + tig0040065:12723-12742 None:intergenic 45.0%
!! TGCAAGGAGGGTGTTGTGAA+GGG + tig0040065:8369-8388 None:intergenic 50.0%
!! TTGCAAGGAGGGTGTTGTGA+AGG + tig0040065:8370-8389 None:intergenic 50.0%
! GGAGAGTGTAGTTGCAAGGA+GGG + tig0040065:8381-8400 None:intergenic 50.0%
! AGGAGAGTGTAGTTGCAAGG+AGG + tig0040065:8382-8401 None:intergenic 50.0%
GGGGGAGAAGAATAAGCCAA+AGG + tig0040065:8402-8421 None:intergenic 50.0%
AGATGCAGAAGAAGGGAAGG+GGG + tig0040065:8420-8439 None:intergenic 50.0%
CAGATGCAGAAGAAGGGAAG+GGG + tig0040065:8421-8440 None:intergenic 50.0%
GCAGATGCAGAAGAAGGGAA+GGG + tig0040065:8422-8441 None:intergenic 50.0%
AGCAGATGCAGAAGAAGGGA+AGG + tig0040065:8423-8442 None:intergenic 50.0%
GTAGAGAGAGGGATTGGAAG+AGG + tig0040065:8458-8477 None:intergenic 50.0%
GAGGAAGTAGAGAGAGGGAT+TGG + tig0040065:8464-8483 None:intergenic 50.0%
GTTTCGGAGGAAGTAGAGAG+AGG + tig0040065:8470-8489 None:intergenic 50.0%
AACATCACGGCATGTTTCGG+AGG + tig0040065:8483-8502 None:intergenic 50.0%
GTAACAACCTCAGGAGCAGT+TGG + tig0040065:8527-8546 None:intergenic 50.0%
TTGATACTGGTCGCAACCGT+TGG - tig0040065:8597-8616 Msa1459130:intron 50.0%
! CTGTGTCGGTGCTTCTTCAT+AGG - tig0040065:8975-8994 Msa1459130:intron 50.0%
CAAGCGAATGCTGACCAGTT+TGG - tig0040065:9134-9153 Msa1459130:three_prime_UTR 50.0%
CTGTCTGTGCCCCTAAAACA+TGG - tig0040065:9448-9467 Msa1459130:CDS 50.0%
CATGTCATACCTCGCCATCT+TGG + tig0040065:9731-9750 None:intergenic 50.0%
ATGGCGAGGTATGACATGAC+TGG - tig0040065:9733-9752 Msa1459130:intron 50.0%
! TCATTCTGCTGGTGTCAGAC+AGG - tig0040065:9840-9859 Msa1459130:intron 50.0%
GAGCAGGTGCCAAACTAACT+TGG + tig0040065:10231-10250 None:intergenic 50.0%
CGTTGTTGTCAGCTCAAGCA+TGG - tig0040065:10297-10316 Msa1459130:intron 50.0%
CAGCTCAAGCATGGAAACTG+TGG - tig0040065:10306-10325 Msa1459130:intron 50.0%
CACACCAGTCTCTTACCGTA+TGG - tig0040065:10371-10390 Msa1459130:intron 50.0%
!! TAATCTTGGTGGGCTAGTGC+AGG - tig0040065:10606-10625 Msa1459130:CDS 50.0%
TCGTGCAGATTATGGCTGAG+AGG - tig0040065:10771-10790 Msa1459130:CDS 50.0%
ACTCTGTACAGAAAAGGGGG+AGG + tig0040065:11435-11454 None:intergenic 50.0%
!! ACAACAGCTTGCTGGAACTG+GGG + tig0040065:11739-11758 None:intergenic 50.0%
! ACAAGAGGAGCACGGATCAA+TGG + tig0040065:11775-11794 None:intergenic 50.0%
CTCGTTGGAAAACGCACGTA+TGG - tig0040065:12176-12195 Msa1459130:intron 50.0%
TGGAAAACGCACGTATGGCA+AGG - tig0040065:12181-12200 Msa1459130:intron 50.0%
! CCTGGAAGTTTCTGGAAGTC+AGG + tig0040065:12398-12417 None:intergenic 50.0%
CCTGACTTCCAGAAACTTCC+AGG - tig0040065:12395-12414 Msa1459130:intron 50.0%
CCAAGCTGCAAATACAGGGA+GGG + tig0040065:12718-12737 None:intergenic 50.0%
CCTCCCTGTATTTGCAGCTT+GGG - tig0040065:12716-12735 Msa1459130:CDS 50.0%
! TTGCTTCTGGTCTTCCAGCA+AGG - tig0040065:12822-12841 Msa1459130:CDS 50.0%
! TGCTTCTGGTCTTCCAGCAA+GGG - tig0040065:12823-12842 Msa1459130:CDS 50.0%
TGCGGATTCTTTACCCTTGC+TGG + tig0040065:12839-12858 None:intergenic 50.0%
AGGGTAAAGAATCCGCATGC+TGG - tig0040065:12842-12861 Msa1459130:CDS 50.0%
! GGAGTGGTGGAGAGTGATGA+AGG + tig0040065:8278-8297 None:intergenic 55.0%
GAGAGAGGGATTGGAAGAGG+AGG + tig0040065:8455-8474 None:intergenic 55.0%
CACAGTTCCAACTGCTCCTG+AGG - tig0040065:8517-8536 Msa1459130:intron 55.0%
! ACCGTTGGTCTCAGGATACC+TGG - tig0040065:8612-8631 Msa1459130:intron 55.0%
GCCAGGTATCCTGAGACCAA+CGG + tig0040065:8616-8635 None:intergenic 55.0%
TTGGTCTCAGGATACCTGGC+AGG - tig0040065:8616-8635 Msa1459130:intron 55.0%
!! GTCGGTGTTGGTGTCGAGTT+TGG - tig0040065:8943-8962 Msa1459130:intron 55.0%
TCAAGAATCGCGATCGGGGT+TGG + tig0040065:9285-9304 None:intergenic 55.0%
CTGACACCAGCAGAATGAGC+AGG + tig0040065:9838-9857 None:intergenic 55.0%
TCCCTGTTGCAAGGCCCTAA+CGG - tig0040065:10170-10189 Msa1459130:intron 55.0%
TCCGTTAGGGCCTTGCAACA+GGG + tig0040065:10174-10193 None:intergenic 55.0%
TTCCGTTAGGGCCTTGCAAC+AGG + tig0040065:10175-10194 None:intergenic 55.0%
!! CAACAGCTTGCTGGAACTGG+GGG + tig0040065:11738-11757 None:intergenic 55.0%
GCTTCAAGATGGGTCTGGTG+TGG - tig0040065:12310-12329 Msa1459130:intron 55.0%
CCCTCCCTGTATTTGCAGCT+TGG - tig0040065:12715-12734 Msa1459130:CDS 55.0%
CCCAAGCTGCAAATACAGGG+AGG + tig0040065:12719-12738 None:intergenic 55.0%
ACATGGCAGCTTCCAGCATG+CGG + tig0040065:12857-12876 None:intergenic 55.0%
! TGGTCGCAACCGTTGGTCTC+AGG - tig0040065:8604-8623 Msa1459130:intron 60.0%
TGGCAAGGCAAGGGCCCATA+AGG + tig0040065:9265-9284 None:intergenic 60.0%
! GATCGGGGTTGGCAAGGCAA+GGG + tig0040065:9274-9293 None:intergenic 60.0%
! AATCGCGATCGGGGTTGGCA+AGG + tig0040065:9280-9299 None:intergenic 60.0%
GACGGTCCTGCTCATTCTGC+TGG - tig0040065:9829-9848 Msa1459130:intron 60.0%
CCAATGCTTGCCCCGAGACA+AGG + tig0040065:12457-12476 None:intergenic 60.0%
CCTTGTCTCGGGGCAAGCAT+TGG - tig0040065:12454-12473 Msa1459130:intron 60.0%
! CGATCGGGGTTGGCAAGGCA+AGG + tig0040065:9275-9294 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0040065 gene 8003 13181 8003 ID=Msa1459130;Name=Msa1459130
tig0040065 mRNA 8003 13181 8003 ID=Msa1459130-mRNA-1;Parent=Msa1459130;Name=Msa1459130-mRNA-1;_AED=0.14;_eAED=0.14;_QI=254|1|1|1|1|0.90|11|846|390
tig0040065 exon 8003 8451 8003 ID=Msa1459130-mRNA-1:exon:22145;Parent=Msa1459130-mRNA-1
tig0040065 exon 8768 8897 8768 ID=Msa1459130-mRNA-1:exon:22144;Parent=Msa1459130-mRNA-1
tig0040065 exon 8982 9044 8982 ID=Msa1459130-mRNA-1:exon:22143;Parent=Msa1459130-mRNA-1
tig0040065 exon 9131 9472 9131 ID=Msa1459130-mRNA-1:exon:22142;Parent=Msa1459130-mRNA-1
tig0040065 exon 10051 10095 10051 ID=Msa1459130-mRNA-1:exon:22141;Parent=Msa1459130-mRNA-1
tig0040065 exon 10557 10633 10557 ID=Msa1459130-mRNA-1:exon:22140;Parent=Msa1459130-mRNA-1
tig0040065 exon 10707 10875 10707 ID=Msa1459130-mRNA-1:exon:22139;Parent=Msa1459130-mRNA-1
tig0040065 exon 10973 11077 10973 ID=Msa1459130-mRNA-1:exon:22138;Parent=Msa1459130-mRNA-1
tig0040065 exon 11323 11460 11323 ID=Msa1459130-mRNA-1:exon:22137;Parent=Msa1459130-mRNA-1
tig0040065 exon 11993 12112 11993 ID=Msa1459130-mRNA-1:exon:22136;Parent=Msa1459130-mRNA-1
tig0040065 exon 12547 13181 12547 ID=Msa1459130-mRNA-1:exon:22135;Parent=Msa1459130-mRNA-1
tig0040065 five_prime_UTR 12928 13181 12928 ID=Msa1459130-mRNA-1:five_prime_utr;Parent=Msa1459130-mRNA-1
tig0040065 CDS 12547 12927 12547 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 CDS 11993 12112 11993 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 CDS 11323 11460 11323 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 CDS 10973 11077 10973 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 CDS 10707 10875 10707 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 CDS 10557 10633 10557 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 CDS 10051 10095 10051 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 CDS 9335 9472 9335 ID=Msa1459130-mRNA-1:cds;Parent=Msa1459130-mRNA-1
tig0040065 three_prime_UTR 9131 9334 9131 ID=Msa1459130-mRNA-1:three_prime_utr;Parent=Msa1459130-mRNA-1
tig0040065 three_prime_UTR 8982 9044 8982 ID=Msa1459130-mRNA-1:three_prime_utr;Parent=Msa1459130-mRNA-1
tig0040065 three_prime_UTR 8768 8897 8768 ID=Msa1459130-mRNA-1:three_prime_utr;Parent=Msa1459130-mRNA-1
tig0040065 three_prime_UTR 8003 8451 8003 ID=Msa1459130-mRNA-1:three_prime_utr;Parent=Msa1459130-mRNA-1
Gene Sequence

>Msa1459130

ATGAATGTGTGGCTAACACCTTCATCACTCTCCACCACTCCAACAATACTTTCAACACCCCATCATCATCATCATCATCTTCATCTTCCAATTATTCCCACTAAGCTTTCCCTTCACAACACCCTCCTTGCAACTACACTCTCCTTTGGCTTATTCTTCTCCCCCTTCCCTTCTTCTGCATCTGCTCTTCAATCACCTCCTCTTCCAATCCCTCTCTCTACTTCCTCCGAAACATGCCGTGATGTTGAGCTTCGAGATATCACAGTTCCAACTGCTCCTGAGGTTGTTACCAATGAAGGACTTGTTCAGGAAGCTTGGCAGATTGTCAATGATGACTTTCTTGATACTGGTCGCAACCGTTGGTCTCAGGATACCTGGCAGCTAAAGAAGAATGATATTTTGAGCAATTCCATTCAGACAAGGTCAAAGGCACACAATATCATCAAGCGAATGCTGACCAGTTTGGGCGATCCTTATACACGTTTTCTTTCACCTGAGGAGTTCTCCAAGATGGCGAGGTATGACATGACTGGTATTGGAATAAACCTTAGGGAAGTTACGGATGAAAATGGAGACCATAGGCTGAAGGTATTGGGATTAATATTGGACGGTCCTGCTCATTCTGCTGGTGTCAGACAGGGGGATGAAATATTGGCAGTTAATAACACAGAGGTAAATGGAAAATCAGCATTTGAAGTATCATCCCTGTTGCAAGGCCCTAACGGAACATCTGTGACTATTCAGCTCAAGCATGGAAACTGTGGGCCTGTTGAATCAATTGAAGTTCAGCGGCAATTTGTGGCTCGCACACCAGTCTCTTACCGTATGGAACAAACTGAAAGTGGTGCTGCTCATATTGGGTACATCCGCCTCAAAGAGTTCAATGCATTGGCTCGAAAAGATTTAGTCATCGCAATGAAGCGACTTCAAGACATGGGTGCCTCATATTTTGTATTGGATCTTAGAGATAATCTTGGTGGGCTAGTGCAGGCCGGAATTGAAATTGCAAAGCTTTTCCTAAACGAAGGAGACACGGTCATCTACACTGCTGGAAGAGACCCCCAGTTCCAGCAAGCTGTTGTTTCGGATACTTCACCATTGATCCGTGCTCCTCTTGTTGTAAAAGTTTTTCCTACATCTGAATTTTTTTTACAATTAAGTTTACGTCAATGA

Protein sequence

>Msa1459130

MNVWLTPSSLSTTPTILSTPHHHHHHLHLPIIPTKLSLHNTLLATTLSFGLFFSPFPSSASALQSPPLPIPLSTSSETCRDVELRDITVPTAPEVVTNEGLVQEAWQIVNDDFLDTGRNRWSQDTWQLKKNDILSNSIQTRSKAHNIIKRMLTSLGDPYTRFLSPEEFSKMARYDMTGIGINLREVTDENGDHRLKVLGLILDGPAHSAGVRQGDEILAVNNTEVNGKSAFEVSSLLQGPNGTSVTIQLKHGNCGPVESIEVQRQFVARTPVSYRMEQTESGAAHIGYIRLKEFNALARKDLVIAMKRLQDMGASYFVLDLRDNLGGLVQAGIEIAKLFLNEGDTVIYTAGRDPQFQQAVVSDTSPLIRAPLVVKVFPTSEFFLQLSLRQ*