AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1090020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090020 MtrunA17_Chr4g0014421 96.667 270 8 1 1 270 1 269 0.0 546
Msa1090020 MtrunA17_Chr2g0328581 50.000 62 29 1 131 192 77 136 3.99e-12 63.9
Msa1090020 MtrunA17_Chr5g0405501 37.500 88 52 2 109 195 53 138 9.47e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1090020 AT4G09350.1 55.118 254 103 3 17 269 3 246 1.09e-95 281
Msa1090020 AT5G59610.2 49.231 65 31 1 127 191 71 133 3.42e-11 62.4
Msa1090020 AT5G59610.1 49.231 65 31 1 127 191 71 133 8.34e-11 61.6
Msa1090020 AT5G59610.4 49.231 65 31 1 127 191 71 133 8.34e-11 61.6
Msa1090020 AT5G59610.3 49.231 65 31 1 127 191 71 133 9.26e-11 61.2
Msa1090020 AT5G59610.5 49.231 65 31 1 127 191 71 133 9.26e-11 61.2

Find 50 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAGTTATGGTTAGATTT+TGG 0.173221 7_3:-3620751 None:intergenic
TCTTCACCCAAAAGCTTCTT+AGG 0.196506 7_3:-3621057 None:intergenic
CTACTATTCAATCCAATCTT+AGG 0.223430 7_3:+3620823 Msa1090020:CDS
GAATATTTGTGCAGATTCTT+AGG 0.256272 7_3:+3621784 Msa1090020:intron
TCTTATTCTTCTTATTGTTT+TGG 0.269689 7_3:-3620851 None:intergenic
ATGTTATGCTATAGAATTAA+AGG 0.293936 7_3:+3622258 Msa1090020:three_prime_UTR
GGAGAAACCTAAGAAGCTTT+TGG 0.298843 7_3:+3621050 Msa1090020:CDS
TGCATTTGTTTGTTGCTGTT+TGG 0.332246 7_3:-3621025 None:intergenic
ATTGCTTCTACATCAGCTTC+TGG 0.336747 7_3:-3621814 None:intergenic
GCAAGTTCATGCTTCTACTA+AGG 0.365942 7_3:+3620915 Msa1090020:CDS
GAAACTGAAAATAAAATTAG+AGG 0.366458 7_3:+3622017 Msa1090020:CDS
AGAGGGAGTGAAGTTGTGTC+TGG 0.393350 7_3:-3621874 None:intergenic
AAGCAATCAAAGTAGCATTC+AGG 0.395851 7_3:+3621830 Msa1090020:CDS
AATCAATTAGAATCTGTATC+TGG 0.402865 7_3:+3622225 Msa1090020:three_prime_UTR
AAAGTAGAAGATTCTATGAT+TGG 0.404469 7_3:+3621959 Msa1090020:CDS
TTCTTCAAGGCTACCTCATA+AGG 0.409509 7_3:-3622042 None:intergenic
CAAACTGTAGTGAGAGTTTG+AGG 0.431351 7_3:-3620893 None:intergenic
GGATTGAATAGTAGAATTTG+TGG 0.442017 7_3:-3620814 None:intergenic
AACAGGTTCATAATTCTTCA+AGG 0.442631 7_3:-3622055 None:intergenic
CCAAGACGATCAACCATGTC+TGG 0.451377 7_3:-3622078 None:intergenic
GTTGAAAACAGAAATCAAAT+AGG 0.456704 7_3:-3622300 None:intergenic
CAAAATATCATAACAGAACA+TGG 0.459987 7_3:+3620705 Msa1090020:exon
CGATCAACCATGTCTGGAAC+AGG 0.460674 7_3:-3622072 None:intergenic
GATGATGAAGGTTGGATTGG+AGG 0.480496 7_3:+3620997 Msa1090020:CDS
AATAGTAGAATTTGTGGAGA+AGG 0.498829 7_3:-3620808 None:intergenic
AAAATTAGAGGATCCTTATG+AGG 0.498846 7_3:+3622029 Msa1090020:CDS
TACATGAGTGATACAGCATA+TGG 0.500284 7_3:-3622172 None:intergenic
AATGATGATGAAGGTTGGAT+TGG 0.510553 7_3:+3620994 Msa1090020:CDS
TGGATTCTTGTGTCAACTCC+AGG 0.515932 7_3:-3620964 None:intergenic
GGGAGAATGATGATGAAGGT+TGG 0.524754 7_3:+3620989 Msa1090020:CDS
CTTCATCATCATTCTCCCAA+TGG 0.525735 7_3:-3620984 None:intergenic
GACTTGCAACTTCTTGAGCA+AGG 0.527830 7_3:-3621984 None:intergenic
GACATGGTTGATCGTCTTGG+TGG 0.530101 7_3:+3622081 Msa1090020:CDS
TGGAACAAAAGAAATAGTTA+TGG 0.532913 7_3:-3620762 None:intergenic
CCAGACATGGTTGATCGTCT+TGG 0.532935 7_3:+3622078 Msa1090020:CDS
AGTTGACACAAGAATCCATT+GGG 0.545872 7_3:+3620969 Msa1090020:CDS
TTATGAACCTGTTCCAGACA+TGG 0.570153 7_3:+3622065 Msa1090020:CDS
ACTTGCAACTTCTTGAGCAA+GGG 0.574767 7_3:-3621983 None:intergenic
AGCATTCAGGAAACTTTCAA+AGG 0.585269 7_3:+3621843 Msa1090020:CDS
AAAATATCATAACAGAACAT+GGG 0.589084 7_3:+3620706 Msa1090020:exon
ACATGGTTGATCGTCTTGGT+GGG 0.606623 7_3:+3622082 Msa1090020:CDS
CATTGGGAGAATGATGATGA+AGG 0.623650 7_3:+3620985 Msa1090020:CDS
AAATATCATAACAGAACATG+GGG 0.627032 7_3:+3620707 Msa1090020:exon
TGCTGTTGAAGCCATGAGGG+TGG 0.630451 7_3:-3620782 None:intergenic
TGTTGCTGTTGAAGCCATGA+GGG 0.642871 7_3:-3620785 None:intergenic
GAGTTGACACAAGAATCCAT+TGG 0.644255 7_3:+3620968 Msa1090020:CDS
ACAGCAACAAACAAATGCAG+AGG 0.656916 7_3:+3621029 Msa1090020:CDS
GCTTCTACTAAGGACACTCA+AGG 0.674014 7_3:+3620925 Msa1090020:CDS
GTGTTGCTGTTGAAGCCATG+AGG 0.677182 7_3:-3620786 None:intergenic
ATTCTTGTGTCAACTCCAGG+TGG 0.739348 7_3:-3620961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGAAGAATAAGATTTTTT+AGG + chr7_3:3620860-3620879 Msa1090020:CDS 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG - chr7_3:3621214-3621233 None:intergenic 15.0%
!!! TAAGAAGAATAAGATTTTTT+AGG + chr7_3:3620860-3620879 Msa1090020:CDS 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG - chr7_3:3621214-3621233 None:intergenic 15.0%
!! AAAATATCATAACAGAACAT+GGG + chr7_3:3620706-3620725 Msa1090020:exon 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG - chr7_3:3620754-3620773 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG - chr7_3:3620854-3620873 None:intergenic 20.0%
!!! TTTATACTTTTTGTAGGAAA+CGG - chr7_3:3621138-3621157 None:intergenic 20.0%
!!! ATTAAATTCTGTTTTTCTTC+AGG + chr7_3:3621632-3621651 Msa1090020:intron 20.0%
!!! CGTTTTAAAAAAAGAAAAAC+TGG + chr7_3:3621675-3621694 Msa1090020:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG - chr7_3:3621908-3621927 None:intergenic 20.0%
!! GAAACTGAAAATAAAATTAG+AGG + chr7_3:3622017-3622036 Msa1090020:CDS 20.0%
!! ATGTTATGCTATAGAATTAA+AGG + chr7_3:3622258-3622277 Msa1090020:three_prime_UTR 20.0%
!! AAAGGAAAAAATAACAATTG+AGG + chr7_3:3622276-3622295 Msa1090020:three_prime_UTR 20.0%
!! AAAATATCATAACAGAACAT+GGG + chr7_3:3620706-3620725 Msa1090020:exon 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG - chr7_3:3620754-3620773 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG - chr7_3:3620854-3620873 None:intergenic 20.0%
!!! TTTATACTTTTTGTAGGAAA+CGG - chr7_3:3621138-3621157 None:intergenic 20.0%
!!! ATTAAATTCTGTTTTTCTTC+AGG + chr7_3:3621632-3621651 Msa1090020:intron 20.0%
!!! CGTTTTAAAAAAAGAAAAAC+TGG + chr7_3:3621675-3621694 Msa1090020:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG - chr7_3:3621908-3621927 None:intergenic 20.0%
!! GAAACTGAAAATAAAATTAG+AGG + chr7_3:3622017-3622036 Msa1090020:CDS 20.0%
!! ATGTTATGCTATAGAATTAA+AGG + chr7_3:3622258-3622277 Msa1090020:three_prime_UTR 20.0%
!! AAAGGAAAAAATAACAATTG+AGG + chr7_3:3622276-3622295 Msa1090020:three_prime_UTR 20.0%
! CAAAATATCATAACAGAACA+TGG + chr7_3:3620705-3620724 Msa1090020:exon 25.0%
! AAATATCATAACAGAACATG+GGG + chr7_3:3620707-3620726 Msa1090020:exon 25.0%
! TGGAACAAAAGAAATAGTTA+TGG - chr7_3:3620765-3620784 None:intergenic 25.0%
!!! TGGTGTTTTATACTTTTTGT+AGG - chr7_3:3621144-3621163 None:intergenic 25.0%
! AGACTAAAACAACTATTAGT+CGG + chr7_3:3621467-3621486 Msa1090020:intron 25.0%
! AAAGTAGAAGATTCTATGAT+TGG + chr7_3:3621959-3621978 Msa1090020:CDS 25.0%
!! TTATTTTCAGTTTCTCTTGT+TGG - chr7_3:3622011-3622030 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG + chr7_3:3622225-3622244 Msa1090020:three_prime_UTR 25.0%
! GTTGAAAACAGAAATCAAAT+AGG - chr7_3:3622303-3622322 None:intergenic 25.0%
! CAAAATATCATAACAGAACA+TGG + chr7_3:3620705-3620724 Msa1090020:exon 25.0%
! AAATATCATAACAGAACATG+GGG + chr7_3:3620707-3620726 Msa1090020:exon 25.0%
! TGGAACAAAAGAAATAGTTA+TGG - chr7_3:3620765-3620784 None:intergenic 25.0%
!!! TGGTGTTTTATACTTTTTGT+AGG - chr7_3:3621144-3621163 None:intergenic 25.0%
! AGACTAAAACAACTATTAGT+CGG + chr7_3:3621467-3621486 Msa1090020:intron 25.0%
! AAAGTAGAAGATTCTATGAT+TGG + chr7_3:3621959-3621978 Msa1090020:CDS 25.0%
!! TTATTTTCAGTTTCTCTTGT+TGG - chr7_3:3622011-3622030 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG + chr7_3:3622225-3622244 Msa1090020:three_prime_UTR 25.0%
! GTTGAAAACAGAAATCAAAT+AGG - chr7_3:3622303-3622322 None:intergenic 25.0%
AATAGTAGAATTTGTGGAGA+AGG - chr7_3:3620811-3620830 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG - chr7_3:3620817-3620836 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG + chr7_3:3620823-3620842 Msa1090020:CDS 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG - chr7_3:3621164-3621183 None:intergenic 30.0%
! AACCACTTCGATTTTCTATT+AGG + chr7_3:3621166-3621185 Msa1090020:intron 30.0%
GGCAAAATTCAGTTTACAAT+CGG - chr7_3:3621193-3621212 None:intergenic 30.0%
AGTTCGTATAAGTATGTGTT+TGG + chr7_3:3621235-3621254 Msa1090020:intron 30.0%
! CGGTGGTTTTTATAAAATCA+CGG - chr7_3:3621358-3621377 None:intergenic 30.0%
! CGTGATTTTATAAAAACCAC+CGG + chr7_3:3621356-3621375 Msa1090020:intron 30.0%
! AGTTATACTTAGTGCTCTTT+TGG - chr7_3:3621387-3621406 None:intergenic 30.0%
TCAGCTAATGTTGAATAGTT+TGG + chr7_3:3621415-3621434 Msa1090020:intron 30.0%
ATGTCAGAGTTTGATCAAAA+AGG - chr7_3:3621502-3621521 None:intergenic 30.0%
TGATCAAACTCTGACATAAT+CGG + chr7_3:3621505-3621524 Msa1090020:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG + chr7_3:3621518-3621537 Msa1090020:intron 30.0%
TTTCTCATGATACAAATCTC+TGG - chr7_3:3621727-3621746 None:intergenic 30.0%
TGACAAGAGTTACTGAATAA+TGG + chr7_3:3621762-3621781 Msa1090020:intron 30.0%
GAATATTTGTGCAGATTCTT+AGG + chr7_3:3621784-3621803 Msa1090020:intron 30.0%
AAAATTAGAGGATCCTTATG+AGG + chr7_3:3622029-3622048 Msa1090020:CDS 30.0%
AACAGGTTCATAATTCTTCA+AGG - chr7_3:3622058-3622077 None:intergenic 30.0%
AATAGTAGAATTTGTGGAGA+AGG - chr7_3:3620811-3620830 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG - chr7_3:3620817-3620836 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG + chr7_3:3620823-3620842 Msa1090020:CDS 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG - chr7_3:3621164-3621183 None:intergenic 30.0%
! AACCACTTCGATTTTCTATT+AGG + chr7_3:3621166-3621185 Msa1090020:intron 30.0%
GGCAAAATTCAGTTTACAAT+CGG - chr7_3:3621193-3621212 None:intergenic 30.0%
AGTTCGTATAAGTATGTGTT+TGG + chr7_3:3621235-3621254 Msa1090020:intron 30.0%
! CGGTGGTTTTTATAAAATCA+CGG - chr7_3:3621358-3621377 None:intergenic 30.0%
! CGTGATTTTATAAAAACCAC+CGG + chr7_3:3621356-3621375 Msa1090020:intron 30.0%
! AGTTATACTTAGTGCTCTTT+TGG - chr7_3:3621387-3621406 None:intergenic 30.0%
TCAGCTAATGTTGAATAGTT+TGG + chr7_3:3621415-3621434 Msa1090020:intron 30.0%
ATGTCAGAGTTTGATCAAAA+AGG - chr7_3:3621502-3621521 None:intergenic 30.0%
TGATCAAACTCTGACATAAT+CGG + chr7_3:3621505-3621524 Msa1090020:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG + chr7_3:3621518-3621537 Msa1090020:intron 30.0%
TTTCTCATGATACAAATCTC+TGG - chr7_3:3621727-3621746 None:intergenic 30.0%
TGACAAGAGTTACTGAATAA+TGG + chr7_3:3621762-3621781 Msa1090020:intron 30.0%
GAATATTTGTGCAGATTCTT+AGG + chr7_3:3621784-3621803 Msa1090020:intron 30.0%
AAAATTAGAGGATCCTTATG+AGG + chr7_3:3622029-3622048 Msa1090020:CDS 30.0%
AACAGGTTCATAATTCTTCA+AGG - chr7_3:3622058-3622077 None:intergenic 30.0%
!!! GTTTTGGTGTTTCCTAAGAT+TGG - chr7_3:3620838-3620857 None:intergenic 35.0%
AGTTGACACAAGAATCCATT+GGG + chr7_3:3620969-3620988 Msa1090020:CDS 35.0%
! AATGATGATGAAGGTTGGAT+TGG + chr7_3:3620994-3621013 Msa1090020:CDS 35.0%
! TGCATTTGTTTGTTGCTGTT+TGG - chr7_3:3621028-3621047 None:intergenic 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG + chr7_3:3621051-3621070 Msa1090020:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG + chr7_3:3621084-3621103 Msa1090020:CDS 35.0%
GACCTAATAGAAAATCGAAG+TGG - chr7_3:3621171-3621190 None:intergenic 35.0%
!!! TGTTTGGACTAGCTTTTACA+AGG + chr7_3:3621251-3621270 Msa1090020:intron 35.0%
!! AAAGCTTGCTTTTGTAGCTT+CGG - chr7_3:3621315-3621334 None:intergenic 35.0%
TACGACTTGAGTTCAATTGT+TGG + chr7_3:3621439-3621458 Msa1090020:intron 35.0%
! GACATAATCGGTACATGTTT+TGG + chr7_3:3621517-3621536 Msa1090020:intron 35.0%
ATCTCTGGTAACTAGTAAGT+TGG - chr7_3:3621712-3621731 None:intergenic 35.0%
AAGCAATCAAAGTAGCATTC+AGG + chr7_3:3621830-3621849 Msa1090020:CDS 35.0%
AGCATTCAGGAAACTTTCAA+AGG + chr7_3:3621843-3621862 Msa1090020:CDS 35.0%
!!! TTTCTGAGGCTGTTTTTAGA+GGG - chr7_3:3621894-3621913 None:intergenic 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG - chr7_3:3621895-3621914 None:intergenic 35.0%
TACATGAGTGATACAGCATA+TGG - chr7_3:3622175-3622194 None:intergenic 35.0%
!!! GTTTTGGTGTTTCCTAAGAT+TGG - chr7_3:3620838-3620857 None:intergenic 35.0%
AGTTGACACAAGAATCCATT+GGG + chr7_3:3620969-3620988 Msa1090020:CDS 35.0%
! AATGATGATGAAGGTTGGAT+TGG + chr7_3:3620994-3621013 Msa1090020:CDS 35.0%
! TGCATTTGTTTGTTGCTGTT+TGG - chr7_3:3621028-3621047 None:intergenic 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG + chr7_3:3621051-3621070 Msa1090020:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG + chr7_3:3621084-3621103 Msa1090020:CDS 35.0%
GACCTAATAGAAAATCGAAG+TGG - chr7_3:3621171-3621190 None:intergenic 35.0%
!!! TGTTTGGACTAGCTTTTACA+AGG + chr7_3:3621251-3621270 Msa1090020:intron 35.0%
!! AAAGCTTGCTTTTGTAGCTT+CGG - chr7_3:3621315-3621334 None:intergenic 35.0%
TACGACTTGAGTTCAATTGT+TGG + chr7_3:3621439-3621458 Msa1090020:intron 35.0%
! GACATAATCGGTACATGTTT+TGG + chr7_3:3621517-3621536 Msa1090020:intron 35.0%
ATCTCTGGTAACTAGTAAGT+TGG - chr7_3:3621712-3621731 None:intergenic 35.0%
AAGCAATCAAAGTAGCATTC+AGG + chr7_3:3621830-3621849 Msa1090020:CDS 35.0%
AGCATTCAGGAAACTTTCAA+AGG + chr7_3:3621843-3621862 Msa1090020:CDS 35.0%
!!! TTTCTGAGGCTGTTTTTAGA+GGG - chr7_3:3621894-3621913 None:intergenic 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG - chr7_3:3621895-3621914 None:intergenic 35.0%
TACATGAGTGATACAGCATA+TGG - chr7_3:3622175-3622194 None:intergenic 35.0%
!!! GGTTAGATTTTGGAATGCTC+AGG - chr7_3:3620744-3620763 None:intergenic 40.0%
! TTTCTTTTGTTCCACCCTCA+TGG + chr7_3:3620771-3620790 Msa1090020:CDS 40.0%
CAAACTGTAGTGAGAGTTTG+AGG - chr7_3:3620896-3620915 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG + chr7_3:3620915-3620934 Msa1090020:CDS 40.0%
GAGTTGACACAAGAATCCAT+TGG + chr7_3:3620968-3620987 Msa1090020:CDS 40.0%
CTTCATCATCATTCTCCCAA+TGG - chr7_3:3620987-3621006 None:intergenic 40.0%
! CATTGGGAGAATGATGATGA+AGG + chr7_3:3620985-3621004 Msa1090020:CDS 40.0%
ACAGCAACAAACAAATGCAG+AGG + chr7_3:3621029-3621048 Msa1090020:CDS 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG + chr7_3:3621050-3621069 Msa1090020:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG - chr7_3:3621060-3621079 None:intergenic 40.0%
!! TTTTCACGTATAGCTTGCCT+CGG - chr7_3:3621290-3621309 None:intergenic 40.0%
!! AAGCTTGCTTTTGTAGCTTC+GGG - chr7_3:3621314-3621333 None:intergenic 40.0%
!!! TAGTGCTCTTTTGGTTTAGC+CGG - chr7_3:3621378-3621397 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG - chr7_3:3621817-3621836 None:intergenic 40.0%
ACTTGCAACTTCTTGAGCAA+GGG - chr7_3:3621986-3622005 None:intergenic 40.0%
TTCTTCAAGGCTACCTCATA+AGG - chr7_3:3622045-3622064 None:intergenic 40.0%
TTATGAACCTGTTCCAGACA+TGG + chr7_3:3622065-3622084 Msa1090020:CDS 40.0%
!!! GGTTAGATTTTGGAATGCTC+AGG - chr7_3:3620744-3620763 None:intergenic 40.0%
! TTTCTTTTGTTCCACCCTCA+TGG + chr7_3:3620771-3620790 Msa1090020:CDS 40.0%
CAAACTGTAGTGAGAGTTTG+AGG - chr7_3:3620896-3620915 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG + chr7_3:3620915-3620934 Msa1090020:CDS 40.0%
GAGTTGACACAAGAATCCAT+TGG + chr7_3:3620968-3620987 Msa1090020:CDS 40.0%
CTTCATCATCATTCTCCCAA+TGG - chr7_3:3620987-3621006 None:intergenic 40.0%
! CATTGGGAGAATGATGATGA+AGG + chr7_3:3620985-3621004 Msa1090020:CDS 40.0%
ACAGCAACAAACAAATGCAG+AGG + chr7_3:3621029-3621048 Msa1090020:CDS 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG + chr7_3:3621050-3621069 Msa1090020:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG - chr7_3:3621060-3621079 None:intergenic 40.0%
!! TTTTCACGTATAGCTTGCCT+CGG - chr7_3:3621290-3621309 None:intergenic 40.0%
!! AAGCTTGCTTTTGTAGCTTC+GGG - chr7_3:3621314-3621333 None:intergenic 40.0%
!!! TAGTGCTCTTTTGGTTTAGC+CGG - chr7_3:3621378-3621397 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG - chr7_3:3621817-3621836 None:intergenic 40.0%
ACTTGCAACTTCTTGAGCAA+GGG - chr7_3:3621986-3622005 None:intergenic 40.0%
TTCTTCAAGGCTACCTCATA+AGG - chr7_3:3622045-3622064 None:intergenic 40.0%
TTATGAACCTGTTCCAGACA+TGG + chr7_3:3622065-3622084 Msa1090020:CDS 40.0%
! TGTTGCTGTTGAAGCCATGA+GGG - chr7_3:3620788-3620807 None:intergenic 45.0%
GCTTCTACTAAGGACACTCA+AGG + chr7_3:3620925-3620944 Msa1090020:CDS 45.0%
ATTCTTGTGTCAACTCCAGG+TGG - chr7_3:3620964-3620983 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG - chr7_3:3620967-3620986 None:intergenic 45.0%
! GGGAGAATGATGATGAAGGT+TGG + chr7_3:3620989-3621008 Msa1090020:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG + chr7_3:3620997-3621016 Msa1090020:CDS 45.0%
! TTTCACGTATAGCTTGCCTC+GGG - chr7_3:3621289-3621308 None:intergenic 45.0%
GACTTGCAACTTCTTGAGCA+AGG - chr7_3:3621987-3622006 None:intergenic 45.0%
ACATGGTTGATCGTCTTGGT+GGG + chr7_3:3622082-3622101 Msa1090020:CDS 45.0%
! TGTTGCTGTTGAAGCCATGA+GGG - chr7_3:3620788-3620807 None:intergenic 45.0%
GCTTCTACTAAGGACACTCA+AGG + chr7_3:3620925-3620944 Msa1090020:CDS 45.0%
ATTCTTGTGTCAACTCCAGG+TGG - chr7_3:3620964-3620983 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG - chr7_3:3620967-3620986 None:intergenic 45.0%
! GGGAGAATGATGATGAAGGT+TGG + chr7_3:3620989-3621008 Msa1090020:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG + chr7_3:3620997-3621016 Msa1090020:CDS 45.0%
! TTTCACGTATAGCTTGCCTC+GGG - chr7_3:3621289-3621308 None:intergenic 45.0%
GACTTGCAACTTCTTGAGCA+AGG - chr7_3:3621987-3622006 None:intergenic 45.0%
ACATGGTTGATCGTCTTGGT+GGG + chr7_3:3622082-3622101 Msa1090020:CDS 45.0%
! GTGTTGCTGTTGAAGCCATG+AGG - chr7_3:3620789-3620808 None:intergenic 50.0%
!! ACTCCAGGTGGTGCTTTTTG+TGG - chr7_3:3620952-3620971 None:intergenic 50.0%
AAGGCAAATATCACGTCCCG+AGG + chr7_3:3621270-3621289 Msa1090020:intron 50.0%
!!! TGCTCTTTTGGTTTAGCCGG+TGG - chr7_3:3621375-3621394 None:intergenic 50.0%
AGAGGGAGTGAAGTTGTGTC+TGG - chr7_3:3621877-3621896 None:intergenic 50.0%
! CGATCAACCATGTCTGGAAC+AGG - chr7_3:3622075-3622094 None:intergenic 50.0%
CCAAGACGATCAACCATGTC+TGG - chr7_3:3622081-3622100 None:intergenic 50.0%
CCAGACATGGTTGATCGTCT+TGG + chr7_3:3622078-3622097 Msa1090020:CDS 50.0%
GACATGGTTGATCGTCTTGG+TGG + chr7_3:3622081-3622100 Msa1090020:CDS 50.0%
! GTGTTGCTGTTGAAGCCATG+AGG - chr7_3:3620789-3620808 None:intergenic 50.0%
!! ACTCCAGGTGGTGCTTTTTG+TGG - chr7_3:3620952-3620971 None:intergenic 50.0%
AAGGCAAATATCACGTCCCG+AGG + chr7_3:3621270-3621289 Msa1090020:intron 50.0%
!!! TGCTCTTTTGGTTTAGCCGG+TGG - chr7_3:3621375-3621394 None:intergenic 50.0%
AGAGGGAGTGAAGTTGTGTC+TGG - chr7_3:3621877-3621896 None:intergenic 50.0%
! CGATCAACCATGTCTGGAAC+AGG - chr7_3:3622075-3622094 None:intergenic 50.0%
CCAAGACGATCAACCATGTC+TGG - chr7_3:3622081-3622100 None:intergenic 50.0%
CCAGACATGGTTGATCGTCT+TGG + chr7_3:3622078-3622097 Msa1090020:CDS 50.0%
GACATGGTTGATCGTCTTGG+TGG + chr7_3:3622081-3622100 Msa1090020:CDS 50.0%
TGCTGTTGAAGCCATGAGGG+TGG - chr7_3:3620785-3620804 None:intergenic 55.0%
!! GGACCACAAAAAGCACCACC+TGG + chr7_3:3620946-3620965 Msa1090020:CDS 55.0%
TGCTGTTGAAGCCATGAGGG+TGG - chr7_3:3620785-3620804 None:intergenic 55.0%
!! GGACCACAAAAAGCACCACC+TGG + chr7_3:3620946-3620965 Msa1090020:CDS 55.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 3620704 3622361 3620704 ID=Msa1090020;Name=Msa1090020
chr7_3 mRNA 3620704 3622361 3620704 ID=Msa1090020-mRNA-1;Parent=Msa1090020;Name=Msa1090020-mRNA-1;_AED=0.01;_eAED=0.01;_QI=20|1|1|1|1|1|2|146|270
chr7_3 exon 3620704 3621118 3620704 ID=Msa1090020-mRNA-1:exon:1423;Parent=Msa1090020-mRNA-1
chr7_3 exon 3621798 3622361 3621798 ID=Msa1090020-mRNA-1:exon:1424;Parent=Msa1090020-mRNA-1
chr7_3 five_prime_UTR 3620704 3620723 3620704 ID=Msa1090020-mRNA-1:five_prime_utr;Parent=Msa1090020-mRNA-1
chr7_3 CDS 3620724 3621118 3620724 ID=Msa1090020-mRNA-1:cds;Parent=Msa1090020-mRNA-1
chr7_3 CDS 3621798 3622215 3621798 ID=Msa1090020-mRNA-1:cds;Parent=Msa1090020-mRNA-1
chr7_3 three_prime_UTR 3622216 3622361 3622216 ID=Msa1090020-mRNA-1:three_prime_utr;Parent=Msa1090020-mRNA-1
Gene Sequence

>Msa1090020

ATGGGGCATGTATTGAACCTGAGCATTCCAAAATCTAACCATAACTATTTCTTTTGTTCCACCCTCATGGCTTCAACAGCAACACCTTCTCCACAAATTCTACTATTCAATCCAATCTTAGGAAACACCAAAACAATAAGAAGAATAAGATTTTTTAGGATAACAACAACCTCAAACTCTCACTACAGTTTGCAAGTTCATGCTTCTACTAAGGACACTCAAGGACCACAAAAAGCACCACCTGGAGTTGACACAAGAATCCATTGGGAGAATGATGATGAAGGTTGGATTGGAGGTAGCACCAAACAGCAACAAACAAATGCAGAGGAGAAACCTAAGAAGCTTTTGGGTGAAGACTTTGCTGATTTGCTCAATTTTCAAGGTTCTCATTATGAATTCTTAGGAATATCACCAGAAGCTGATGTAGAAGCAATCAAAGTAGCATTCAGGAAACTTTCAAAGGAGTATCATCCAGACACAACTTCACTCCCTCTAAAAACAGCCTCAGAAAAATTCATGAAATTAAAAGAAGTTTACACTGTTCTGAGCAATGAAGAAAGTAGAAGATTCTATGATTGGACCCTTGCTCAAGAAGTTGCAAGTCGCCAACAAGAGAAACTGAAAATAAAATTAGAGGATCCTTATGAGGTAGCCTTGAAGAATTATGAACCTGTTCCAGACATGGTTGATCGTCTTGGTGGGAAGAATATGAAGCTTAGTGATCAAGCTGTTTCTGCTATCACTATTGATATTTTTATCATTATTTTTTCCATATGCTGTATCACTCATGTAGTTTTCTTTAAAGAATACTGA

Protein sequence

>Msa1090020

MGHVLNLSIPKSNHNYFFCSTLMASTATPSPQILLFNPILGNTKTIRRIRFFRITTTSNSHYSLQVHASTKDTQGPQKAPPGVDTRIHWENDDEGWIGGSTKQQQTNAEEKPKKLLGEDFADLLNFQGSHYEFLGISPEADVEAIKVAFRKLSKEYHPDTTSLPLKTASEKFMKLKEVYTVLSNEESRRFYDWTLAQEVASRQQEKLKIKLEDPYEVALKNYEPVPDMVDRLGGKNMKLSDQAVSAITIDIFIIIFSICCITHVVFFKEY*