AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0635070


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635070 MtrunA17_Chr4g0014421 96.667 270 8 1 1 270 1 269 0.0 546
Msa0635070 MtrunA17_Chr2g0328581 50.000 62 29 1 131 192 77 136 3.99e-12 63.9
Msa0635070 MtrunA17_Chr5g0405501 37.500 88 52 2 109 195 53 138 9.47e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0635070 AT4G09350.1 55.118 254 103 3 17 269 3 246 1.09e-95 281
Msa0635070 AT5G59610.2 49.231 65 31 1 127 191 71 133 3.42e-11 62.4
Msa0635070 AT5G59610.1 49.231 65 31 1 127 191 71 133 8.34e-11 61.6
Msa0635070 AT5G59610.4 49.231 65 31 1 127 191 71 133 8.34e-11 61.6
Msa0635070 AT5G59610.3 49.231 65 31 1 127 191 71 133 9.26e-11 61.2
Msa0635070 AT5G59610.5 49.231 65 31 1 127 191 71 133 9.26e-11 61.2

Find 50 sgRNAs with CRISPR-Local

Find 188 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAATAGTTATGGTTAGATTT+TGG 0.173221 4_3:-23248055 None:intergenic
TCTTCACCCAAAAGCTTCTT+AGG 0.196506 4_3:-23248361 None:intergenic
CTACTATTCAATCCAATCTT+AGG 0.223430 4_3:+23248127 Msa0635070:CDS
GAATATTTGTGCAGATTCTT+AGG 0.256272 4_3:+23249088 Msa0635070:intron
TCTTATTCTTCTTATTGTTT+TGG 0.269689 4_3:-23248155 None:intergenic
ATGTTATGCTATAGAATTAA+AGG 0.293936 4_3:+23249562 Msa0635070:three_prime_UTR
GGAGAAACCTAAGAAGCTTT+TGG 0.298843 4_3:+23248354 Msa0635070:CDS
TGCATTTGTTTGTTGCTGTT+TGG 0.332246 4_3:-23248329 None:intergenic
ATTGCTTCTACATCAGCTTC+TGG 0.336747 4_3:-23249118 None:intergenic
GCAAGTTCATGCTTCTACTA+AGG 0.365942 4_3:+23248219 Msa0635070:CDS
GAAACTGAAAATAAAATTAG+AGG 0.366458 4_3:+23249321 Msa0635070:CDS
AGAGGGAGTGAAGTTGTGTC+TGG 0.393350 4_3:-23249178 None:intergenic
AAGCAATCAAAGTAGCATTC+AGG 0.395851 4_3:+23249134 Msa0635070:CDS
AATCAATTAGAATCTGTATC+TGG 0.402865 4_3:+23249529 Msa0635070:three_prime_UTR
AAAGTAGAAGATTCTATGAT+TGG 0.404469 4_3:+23249263 Msa0635070:CDS
TTCTTCAAGGCTACCTCATA+AGG 0.409509 4_3:-23249346 None:intergenic
CAAACTGTAGTGAGAGTTTG+AGG 0.431351 4_3:-23248197 None:intergenic
GGATTGAATAGTAGAATTTG+TGG 0.442017 4_3:-23248118 None:intergenic
AACAGGTTCATAATTCTTCA+AGG 0.442631 4_3:-23249359 None:intergenic
CCAAGACGATCAACCATGTC+TGG 0.451377 4_3:-23249382 None:intergenic
GTTGAAAACAGAAATCAAAT+AGG 0.456704 4_3:-23249604 None:intergenic
CAAAATATCATAACAGAACA+TGG 0.459987 4_3:+23248009 Msa0635070:exon
CGATCAACCATGTCTGGAAC+AGG 0.460674 4_3:-23249376 None:intergenic
GATGATGAAGGTTGGATTGG+AGG 0.480496 4_3:+23248301 Msa0635070:CDS
AATAGTAGAATTTGTGGAGA+AGG 0.498829 4_3:-23248112 None:intergenic
AAAATTAGAGGATCCTTATG+AGG 0.498846 4_3:+23249333 Msa0635070:CDS
TACATGAGTGATACAGCATA+TGG 0.500284 4_3:-23249476 None:intergenic
AATGATGATGAAGGTTGGAT+TGG 0.510553 4_3:+23248298 Msa0635070:CDS
TGGATTCTTGTGTCAACTCC+AGG 0.515932 4_3:-23248268 None:intergenic
GGGAGAATGATGATGAAGGT+TGG 0.524754 4_3:+23248293 Msa0635070:CDS
CTTCATCATCATTCTCCCAA+TGG 0.525735 4_3:-23248288 None:intergenic
GACTTGCAACTTCTTGAGCA+AGG 0.527830 4_3:-23249288 None:intergenic
GACATGGTTGATCGTCTTGG+TGG 0.530101 4_3:+23249385 Msa0635070:CDS
TGGAACAAAAGAAATAGTTA+TGG 0.532913 4_3:-23248066 None:intergenic
CCAGACATGGTTGATCGTCT+TGG 0.532935 4_3:+23249382 Msa0635070:CDS
AGTTGACACAAGAATCCATT+GGG 0.545872 4_3:+23248273 Msa0635070:CDS
TTATGAACCTGTTCCAGACA+TGG 0.570153 4_3:+23249369 Msa0635070:CDS
ACTTGCAACTTCTTGAGCAA+GGG 0.574767 4_3:-23249287 None:intergenic
AGCATTCAGGAAACTTTCAA+AGG 0.585269 4_3:+23249147 Msa0635070:CDS
AAAATATCATAACAGAACAT+GGG 0.589084 4_3:+23248010 Msa0635070:exon
ACATGGTTGATCGTCTTGGT+GGG 0.606623 4_3:+23249386 Msa0635070:CDS
CATTGGGAGAATGATGATGA+AGG 0.623650 4_3:+23248289 Msa0635070:CDS
AAATATCATAACAGAACATG+GGG 0.627032 4_3:+23248011 Msa0635070:exon
TGCTGTTGAAGCCATGAGGG+TGG 0.630451 4_3:-23248086 None:intergenic
TGTTGCTGTTGAAGCCATGA+GGG 0.642871 4_3:-23248089 None:intergenic
GAGTTGACACAAGAATCCAT+TGG 0.644255 4_3:+23248272 Msa0635070:CDS
ACAGCAACAAACAAATGCAG+AGG 0.656916 4_3:+23248333 Msa0635070:CDS
GCTTCTACTAAGGACACTCA+AGG 0.674014 4_3:+23248229 Msa0635070:CDS
GTGTTGCTGTTGAAGCCATG+AGG 0.677182 4_3:-23248090 None:intergenic
ATTCTTGTGTCAACTCCAGG+TGG 0.739348 4_3:-23248265 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAGAAGAATAAGATTTTTT+AGG + chr4_3:23248164-23248183 Msa0635070:CDS 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG - chr4_3:23248518-23248537 None:intergenic 15.0%
!!! TAAGAAGAATAAGATTTTTT+AGG + chr4_3:23248164-23248183 Msa0635070:CDS 15.0%
!!! TAGTTTAAAATTGAATTTCA+AGG - chr4_3:23248518-23248537 None:intergenic 15.0%
!! AAAATATCATAACAGAACAT+GGG + chr4_3:23248010-23248029 Msa0635070:exon 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG - chr4_3:23248058-23248077 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG - chr4_3:23248158-23248177 None:intergenic 20.0%
!!! TTTATACTTTTTGTAGGAAA+CGG - chr4_3:23248442-23248461 None:intergenic 20.0%
!!! ATTAAATTCTGTTTTTCTTC+AGG + chr4_3:23248936-23248955 Msa0635070:intron 20.0%
!!! CGTTTTAAAAAAAGAAAAAC+TGG + chr4_3:23248979-23248998 Msa0635070:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG - chr4_3:23249212-23249231 None:intergenic 20.0%
!! GAAACTGAAAATAAAATTAG+AGG + chr4_3:23249321-23249340 Msa0635070:CDS 20.0%
!! ATGTTATGCTATAGAATTAA+AGG + chr4_3:23249562-23249581 Msa0635070:three_prime_UTR 20.0%
!! AAAGGAAAAAATAACAATTG+AGG + chr4_3:23249580-23249599 Msa0635070:three_prime_UTR 20.0%
!! AAAATATCATAACAGAACAT+GGG + chr4_3:23248010-23248029 Msa0635070:exon 20.0%
!!! AAATAGTTATGGTTAGATTT+TGG - chr4_3:23248058-23248077 None:intergenic 20.0%
!!! TCTTATTCTTCTTATTGTTT+TGG - chr4_3:23248158-23248177 None:intergenic 20.0%
!!! TTTATACTTTTTGTAGGAAA+CGG - chr4_3:23248442-23248461 None:intergenic 20.0%
!!! ATTAAATTCTGTTTTTCTTC+AGG + chr4_3:23248936-23248955 Msa0635070:intron 20.0%
!!! CGTTTTAAAAAAAGAAAAAC+TGG + chr4_3:23248979-23248998 Msa0635070:intron 20.0%
!!! TAATTTCATGAATTTTTCTG+AGG - chr4_3:23249212-23249231 None:intergenic 20.0%
!! GAAACTGAAAATAAAATTAG+AGG + chr4_3:23249321-23249340 Msa0635070:CDS 20.0%
!! ATGTTATGCTATAGAATTAA+AGG + chr4_3:23249562-23249581 Msa0635070:three_prime_UTR 20.0%
!! AAAGGAAAAAATAACAATTG+AGG + chr4_3:23249580-23249599 Msa0635070:three_prime_UTR 20.0%
! CAAAATATCATAACAGAACA+TGG + chr4_3:23248009-23248028 Msa0635070:exon 25.0%
! AAATATCATAACAGAACATG+GGG + chr4_3:23248011-23248030 Msa0635070:exon 25.0%
! TGGAACAAAAGAAATAGTTA+TGG - chr4_3:23248069-23248088 None:intergenic 25.0%
!!! TGGTGTTTTATACTTTTTGT+AGG - chr4_3:23248448-23248467 None:intergenic 25.0%
! AGACTAAAACAACTATTAGT+CGG + chr4_3:23248771-23248790 Msa0635070:intron 25.0%
! AAAGTAGAAGATTCTATGAT+TGG + chr4_3:23249263-23249282 Msa0635070:CDS 25.0%
!! TTATTTTCAGTTTCTCTTGT+TGG - chr4_3:23249315-23249334 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG + chr4_3:23249529-23249548 Msa0635070:three_prime_UTR 25.0%
! GTTGAAAACAGAAATCAAAT+AGG - chr4_3:23249607-23249626 None:intergenic 25.0%
! CAAAATATCATAACAGAACA+TGG + chr4_3:23248009-23248028 Msa0635070:exon 25.0%
! AAATATCATAACAGAACATG+GGG + chr4_3:23248011-23248030 Msa0635070:exon 25.0%
! TGGAACAAAAGAAATAGTTA+TGG - chr4_3:23248069-23248088 None:intergenic 25.0%
!!! TGGTGTTTTATACTTTTTGT+AGG - chr4_3:23248448-23248467 None:intergenic 25.0%
! AGACTAAAACAACTATTAGT+CGG + chr4_3:23248771-23248790 Msa0635070:intron 25.0%
! AAAGTAGAAGATTCTATGAT+TGG + chr4_3:23249263-23249282 Msa0635070:CDS 25.0%
!! TTATTTTCAGTTTCTCTTGT+TGG - chr4_3:23249315-23249334 None:intergenic 25.0%
! AATCAATTAGAATCTGTATC+TGG + chr4_3:23249529-23249548 Msa0635070:three_prime_UTR 25.0%
! GTTGAAAACAGAAATCAAAT+AGG - chr4_3:23249607-23249626 None:intergenic 25.0%
AATAGTAGAATTTGTGGAGA+AGG - chr4_3:23248115-23248134 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG - chr4_3:23248121-23248140 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG + chr4_3:23248127-23248146 Msa0635070:CDS 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG - chr4_3:23248468-23248487 None:intergenic 30.0%
! AACCACTTCGATTTTCTATT+AGG + chr4_3:23248470-23248489 Msa0635070:intron 30.0%
GGCAAAATTCAGTTTACAAT+CGG - chr4_3:23248497-23248516 None:intergenic 30.0%
AGTTCGTATAAGTATGTGTT+TGG + chr4_3:23248539-23248558 Msa0635070:intron 30.0%
! CGGTGGTTTTTATAAAATCA+CGG - chr4_3:23248662-23248681 None:intergenic 30.0%
! CGTGATTTTATAAAAACCAC+CGG + chr4_3:23248660-23248679 Msa0635070:intron 30.0%
! AGTTATACTTAGTGCTCTTT+TGG - chr4_3:23248691-23248710 None:intergenic 30.0%
TCAGCTAATGTTGAATAGTT+TGG + chr4_3:23248719-23248738 Msa0635070:intron 30.0%
ATGTCAGAGTTTGATCAAAA+AGG - chr4_3:23248806-23248825 None:intergenic 30.0%
TGATCAAACTCTGACATAAT+CGG + chr4_3:23248809-23248828 Msa0635070:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG + chr4_3:23248822-23248841 Msa0635070:intron 30.0%
TTTCTCATGATACAAATCTC+TGG - chr4_3:23249031-23249050 None:intergenic 30.0%
TGACAAGAGTTACTGAATAA+TGG + chr4_3:23249066-23249085 Msa0635070:intron 30.0%
GAATATTTGTGCAGATTCTT+AGG + chr4_3:23249088-23249107 Msa0635070:intron 30.0%
AAAATTAGAGGATCCTTATG+AGG + chr4_3:23249333-23249352 Msa0635070:CDS 30.0%
AACAGGTTCATAATTCTTCA+AGG - chr4_3:23249362-23249381 None:intergenic 30.0%
AATAGTAGAATTTGTGGAGA+AGG - chr4_3:23248115-23248134 None:intergenic 30.0%
GGATTGAATAGTAGAATTTG+TGG - chr4_3:23248121-23248140 None:intergenic 30.0%
CTACTATTCAATCCAATCTT+AGG + chr4_3:23248127-23248146 Msa0635070:CDS 30.0%
! TAGAAAATCGAAGTGGTTTT+TGG - chr4_3:23248468-23248487 None:intergenic 30.0%
! AACCACTTCGATTTTCTATT+AGG + chr4_3:23248470-23248489 Msa0635070:intron 30.0%
GGCAAAATTCAGTTTACAAT+CGG - chr4_3:23248497-23248516 None:intergenic 30.0%
AGTTCGTATAAGTATGTGTT+TGG + chr4_3:23248539-23248558 Msa0635070:intron 30.0%
! CGGTGGTTTTTATAAAATCA+CGG - chr4_3:23248662-23248681 None:intergenic 30.0%
! CGTGATTTTATAAAAACCAC+CGG + chr4_3:23248660-23248679 Msa0635070:intron 30.0%
! AGTTATACTTAGTGCTCTTT+TGG - chr4_3:23248691-23248710 None:intergenic 30.0%
TCAGCTAATGTTGAATAGTT+TGG + chr4_3:23248719-23248738 Msa0635070:intron 30.0%
ATGTCAGAGTTTGATCAAAA+AGG - chr4_3:23248806-23248825 None:intergenic 30.0%
TGATCAAACTCTGACATAAT+CGG + chr4_3:23248809-23248828 Msa0635070:intron 30.0%
! ACATAATCGGTACATGTTTT+GGG + chr4_3:23248822-23248841 Msa0635070:intron 30.0%
TTTCTCATGATACAAATCTC+TGG - chr4_3:23249031-23249050 None:intergenic 30.0%
TGACAAGAGTTACTGAATAA+TGG + chr4_3:23249066-23249085 Msa0635070:intron 30.0%
GAATATTTGTGCAGATTCTT+AGG + chr4_3:23249088-23249107 Msa0635070:intron 30.0%
AAAATTAGAGGATCCTTATG+AGG + chr4_3:23249333-23249352 Msa0635070:CDS 30.0%
AACAGGTTCATAATTCTTCA+AGG - chr4_3:23249362-23249381 None:intergenic 30.0%
!!! GTTTTGGTGTTTCCTAAGAT+TGG - chr4_3:23248142-23248161 None:intergenic 35.0%
AGTTGACACAAGAATCCATT+GGG + chr4_3:23248273-23248292 Msa0635070:CDS 35.0%
! AATGATGATGAAGGTTGGAT+TGG + chr4_3:23248298-23248317 Msa0635070:CDS 35.0%
! TGCATTTGTTTGTTGCTGTT+TGG - chr4_3:23248332-23248351 None:intergenic 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG + chr4_3:23248355-23248374 Msa0635070:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG + chr4_3:23248388-23248407 Msa0635070:CDS 35.0%
GACCTAATAGAAAATCGAAG+TGG - chr4_3:23248475-23248494 None:intergenic 35.0%
!!! TGTTTGGACTAGCTTTTACA+AGG + chr4_3:23248555-23248574 Msa0635070:intron 35.0%
!! AAAGCTTGCTTTTGTAGCTT+CGG - chr4_3:23248619-23248638 None:intergenic 35.0%
TACGACTTGAGTTCAATTGT+TGG + chr4_3:23248743-23248762 Msa0635070:intron 35.0%
! GACATAATCGGTACATGTTT+TGG + chr4_3:23248821-23248840 Msa0635070:intron 35.0%
ATCTCTGGTAACTAGTAAGT+TGG - chr4_3:23249016-23249035 None:intergenic 35.0%
AAGCAATCAAAGTAGCATTC+AGG + chr4_3:23249134-23249153 Msa0635070:CDS 35.0%
AGCATTCAGGAAACTTTCAA+AGG + chr4_3:23249147-23249166 Msa0635070:CDS 35.0%
!!! TTTCTGAGGCTGTTTTTAGA+GGG - chr4_3:23249198-23249217 None:intergenic 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG - chr4_3:23249199-23249218 None:intergenic 35.0%
TACATGAGTGATACAGCATA+TGG - chr4_3:23249479-23249498 None:intergenic 35.0%
!!! GTTTTGGTGTTTCCTAAGAT+TGG - chr4_3:23248142-23248161 None:intergenic 35.0%
AGTTGACACAAGAATCCATT+GGG + chr4_3:23248273-23248292 Msa0635070:CDS 35.0%
! AATGATGATGAAGGTTGGAT+TGG + chr4_3:23248298-23248317 Msa0635070:CDS 35.0%
! TGCATTTGTTTGTTGCTGTT+TGG - chr4_3:23248332-23248351 None:intergenic 35.0%
! GAGAAACCTAAGAAGCTTTT+GGG + chr4_3:23248355-23248374 Msa0635070:CDS 35.0%
!!! GCTGATTTGCTCAATTTTCA+AGG + chr4_3:23248388-23248407 Msa0635070:CDS 35.0%
GACCTAATAGAAAATCGAAG+TGG - chr4_3:23248475-23248494 None:intergenic 35.0%
!!! TGTTTGGACTAGCTTTTACA+AGG + chr4_3:23248555-23248574 Msa0635070:intron 35.0%
!! AAAGCTTGCTTTTGTAGCTT+CGG - chr4_3:23248619-23248638 None:intergenic 35.0%
TACGACTTGAGTTCAATTGT+TGG + chr4_3:23248743-23248762 Msa0635070:intron 35.0%
! GACATAATCGGTACATGTTT+TGG + chr4_3:23248821-23248840 Msa0635070:intron 35.0%
ATCTCTGGTAACTAGTAAGT+TGG - chr4_3:23249016-23249035 None:intergenic 35.0%
AAGCAATCAAAGTAGCATTC+AGG + chr4_3:23249134-23249153 Msa0635070:CDS 35.0%
AGCATTCAGGAAACTTTCAA+AGG + chr4_3:23249147-23249166 Msa0635070:CDS 35.0%
!!! TTTCTGAGGCTGTTTTTAGA+GGG - chr4_3:23249198-23249217 None:intergenic 35.0%
!!! TTTTCTGAGGCTGTTTTTAG+AGG - chr4_3:23249199-23249218 None:intergenic 35.0%
TACATGAGTGATACAGCATA+TGG - chr4_3:23249479-23249498 None:intergenic 35.0%
!!! GGTTAGATTTTGGAATGCTC+AGG - chr4_3:23248048-23248067 None:intergenic 40.0%
! TTTCTTTTGTTCCACCCTCA+TGG + chr4_3:23248075-23248094 Msa0635070:CDS 40.0%
CAAACTGTAGTGAGAGTTTG+AGG - chr4_3:23248200-23248219 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG + chr4_3:23248219-23248238 Msa0635070:CDS 40.0%
GAGTTGACACAAGAATCCAT+TGG + chr4_3:23248272-23248291 Msa0635070:CDS 40.0%
CTTCATCATCATTCTCCCAA+TGG - chr4_3:23248291-23248310 None:intergenic 40.0%
! CATTGGGAGAATGATGATGA+AGG + chr4_3:23248289-23248308 Msa0635070:CDS 40.0%
ACAGCAACAAACAAATGCAG+AGG + chr4_3:23248333-23248352 Msa0635070:CDS 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG + chr4_3:23248354-23248373 Msa0635070:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG - chr4_3:23248364-23248383 None:intergenic 40.0%
!! TTTTCACGTATAGCTTGCCT+CGG - chr4_3:23248594-23248613 None:intergenic 40.0%
!! AAGCTTGCTTTTGTAGCTTC+GGG - chr4_3:23248618-23248637 None:intergenic 40.0%
!!! TAGTGCTCTTTTGGTTTAGC+CGG - chr4_3:23248682-23248701 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG - chr4_3:23249121-23249140 None:intergenic 40.0%
ACTTGCAACTTCTTGAGCAA+GGG - chr4_3:23249290-23249309 None:intergenic 40.0%
TTCTTCAAGGCTACCTCATA+AGG - chr4_3:23249349-23249368 None:intergenic 40.0%
TTATGAACCTGTTCCAGACA+TGG + chr4_3:23249369-23249388 Msa0635070:CDS 40.0%
!!! GGTTAGATTTTGGAATGCTC+AGG - chr4_3:23248048-23248067 None:intergenic 40.0%
! TTTCTTTTGTTCCACCCTCA+TGG + chr4_3:23248075-23248094 Msa0635070:CDS 40.0%
CAAACTGTAGTGAGAGTTTG+AGG - chr4_3:23248200-23248219 None:intergenic 40.0%
GCAAGTTCATGCTTCTACTA+AGG + chr4_3:23248219-23248238 Msa0635070:CDS 40.0%
GAGTTGACACAAGAATCCAT+TGG + chr4_3:23248272-23248291 Msa0635070:CDS 40.0%
CTTCATCATCATTCTCCCAA+TGG - chr4_3:23248291-23248310 None:intergenic 40.0%
! CATTGGGAGAATGATGATGA+AGG + chr4_3:23248289-23248308 Msa0635070:CDS 40.0%
ACAGCAACAAACAAATGCAG+AGG + chr4_3:23248333-23248352 Msa0635070:CDS 40.0%
! GGAGAAACCTAAGAAGCTTT+TGG + chr4_3:23248354-23248373 Msa0635070:CDS 40.0%
TCTTCACCCAAAAGCTTCTT+AGG - chr4_3:23248364-23248383 None:intergenic 40.0%
!! TTTTCACGTATAGCTTGCCT+CGG - chr4_3:23248594-23248613 None:intergenic 40.0%
!! AAGCTTGCTTTTGTAGCTTC+GGG - chr4_3:23248618-23248637 None:intergenic 40.0%
!!! TAGTGCTCTTTTGGTTTAGC+CGG - chr4_3:23248682-23248701 None:intergenic 40.0%
ATTGCTTCTACATCAGCTTC+TGG - chr4_3:23249121-23249140 None:intergenic 40.0%
ACTTGCAACTTCTTGAGCAA+GGG - chr4_3:23249290-23249309 None:intergenic 40.0%
TTCTTCAAGGCTACCTCATA+AGG - chr4_3:23249349-23249368 None:intergenic 40.0%
TTATGAACCTGTTCCAGACA+TGG + chr4_3:23249369-23249388 Msa0635070:CDS 40.0%
! TGTTGCTGTTGAAGCCATGA+GGG - chr4_3:23248092-23248111 None:intergenic 45.0%
GCTTCTACTAAGGACACTCA+AGG + chr4_3:23248229-23248248 Msa0635070:CDS 45.0%
ATTCTTGTGTCAACTCCAGG+TGG - chr4_3:23248268-23248287 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG - chr4_3:23248271-23248290 None:intergenic 45.0%
! GGGAGAATGATGATGAAGGT+TGG + chr4_3:23248293-23248312 Msa0635070:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG + chr4_3:23248301-23248320 Msa0635070:CDS 45.0%
! TTTCACGTATAGCTTGCCTC+GGG - chr4_3:23248593-23248612 None:intergenic 45.0%
GACTTGCAACTTCTTGAGCA+AGG - chr4_3:23249291-23249310 None:intergenic 45.0%
ACATGGTTGATCGTCTTGGT+GGG + chr4_3:23249386-23249405 Msa0635070:CDS 45.0%
! TGTTGCTGTTGAAGCCATGA+GGG - chr4_3:23248092-23248111 None:intergenic 45.0%
GCTTCTACTAAGGACACTCA+AGG + chr4_3:23248229-23248248 Msa0635070:CDS 45.0%
ATTCTTGTGTCAACTCCAGG+TGG - chr4_3:23248268-23248287 None:intergenic 45.0%
TGGATTCTTGTGTCAACTCC+AGG - chr4_3:23248271-23248290 None:intergenic 45.0%
! GGGAGAATGATGATGAAGGT+TGG + chr4_3:23248293-23248312 Msa0635070:CDS 45.0%
! GATGATGAAGGTTGGATTGG+AGG + chr4_3:23248301-23248320 Msa0635070:CDS 45.0%
! TTTCACGTATAGCTTGCCTC+GGG - chr4_3:23248593-23248612 None:intergenic 45.0%
GACTTGCAACTTCTTGAGCA+AGG - chr4_3:23249291-23249310 None:intergenic 45.0%
ACATGGTTGATCGTCTTGGT+GGG + chr4_3:23249386-23249405 Msa0635070:CDS 45.0%
! GTGTTGCTGTTGAAGCCATG+AGG - chr4_3:23248093-23248112 None:intergenic 50.0%
!! ACTCCAGGTGGTGCTTTTTG+TGG - chr4_3:23248256-23248275 None:intergenic 50.0%
AAGGCAAATATCACGTCCCG+AGG + chr4_3:23248574-23248593 Msa0635070:intron 50.0%
!!! TGCTCTTTTGGTTTAGCCGG+TGG - chr4_3:23248679-23248698 None:intergenic 50.0%
AGAGGGAGTGAAGTTGTGTC+TGG - chr4_3:23249181-23249200 None:intergenic 50.0%
! CGATCAACCATGTCTGGAAC+AGG - chr4_3:23249379-23249398 None:intergenic 50.0%
CCAAGACGATCAACCATGTC+TGG - chr4_3:23249385-23249404 None:intergenic 50.0%
CCAGACATGGTTGATCGTCT+TGG + chr4_3:23249382-23249401 Msa0635070:CDS 50.0%
GACATGGTTGATCGTCTTGG+TGG + chr4_3:23249385-23249404 Msa0635070:CDS 50.0%
! GTGTTGCTGTTGAAGCCATG+AGG - chr4_3:23248093-23248112 None:intergenic 50.0%
!! ACTCCAGGTGGTGCTTTTTG+TGG - chr4_3:23248256-23248275 None:intergenic 50.0%
AAGGCAAATATCACGTCCCG+AGG + chr4_3:23248574-23248593 Msa0635070:intron 50.0%
!!! TGCTCTTTTGGTTTAGCCGG+TGG - chr4_3:23248679-23248698 None:intergenic 50.0%
AGAGGGAGTGAAGTTGTGTC+TGG - chr4_3:23249181-23249200 None:intergenic 50.0%
! CGATCAACCATGTCTGGAAC+AGG - chr4_3:23249379-23249398 None:intergenic 50.0%
CCAAGACGATCAACCATGTC+TGG - chr4_3:23249385-23249404 None:intergenic 50.0%
CCAGACATGGTTGATCGTCT+TGG + chr4_3:23249382-23249401 Msa0635070:CDS 50.0%
GACATGGTTGATCGTCTTGG+TGG + chr4_3:23249385-23249404 Msa0635070:CDS 50.0%
TGCTGTTGAAGCCATGAGGG+TGG - chr4_3:23248089-23248108 None:intergenic 55.0%
!! GGACCACAAAAAGCACCACC+TGG + chr4_3:23248250-23248269 Msa0635070:CDS 55.0%
TGCTGTTGAAGCCATGAGGG+TGG - chr4_3:23248089-23248108 None:intergenic 55.0%
!! GGACCACAAAAAGCACCACC+TGG + chr4_3:23248250-23248269 Msa0635070:CDS 55.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 23248008 23249665 23248008 ID=Msa0635070;Name=Msa0635070
chr4_3 mRNA 23248008 23249665 23248008 ID=Msa0635070-mRNA-1;Parent=Msa0635070;Name=Msa0635070-mRNA-1;_AED=0.01;_eAED=0.01;_QI=20|1|1|1|1|1|2|146|270
chr4_3 exon 23248008 23248422 23248008 ID=Msa0635070-mRNA-1:exon:5981;Parent=Msa0635070-mRNA-1
chr4_3 exon 23249102 23249665 23249102 ID=Msa0635070-mRNA-1:exon:5982;Parent=Msa0635070-mRNA-1
chr4_3 five_prime_UTR 23248008 23248027 23248008 ID=Msa0635070-mRNA-1:five_prime_utr;Parent=Msa0635070-mRNA-1
chr4_3 CDS 23248028 23248422 23248028 ID=Msa0635070-mRNA-1:cds;Parent=Msa0635070-mRNA-1
chr4_3 CDS 23249102 23249519 23249102 ID=Msa0635070-mRNA-1:cds;Parent=Msa0635070-mRNA-1
chr4_3 three_prime_UTR 23249520 23249665 23249520 ID=Msa0635070-mRNA-1:three_prime_utr;Parent=Msa0635070-mRNA-1
Gene Sequence

>Msa0635070

ATGGGGCATGTATTGAACCTGAGCATTCCAAAATCTAACCATAACTATTTCTTTTGTTCCACCCTCATGGCTTCAACAGCAACACCTTCTCCACAAATTCTACTATTCAATCCAATCTTAGGAAACACCAAAACAATAAGAAGAATAAGATTTTTTAGGATAACAACAACCTCAAACTCTCACTACAGTTTGCAAGTTCATGCTTCTACTAAGGACACTCAAGGACCACAAAAAGCACCACCTGGAGTTGACACAAGAATCCATTGGGAGAATGATGATGAAGGTTGGATTGGAGGTAGCACCAAACAGCAACAAACAAATGCAGAGGAGAAACCTAAGAAGCTTTTGGGTGAAGACTTTGCTGATTTGCTCAATTTTCAAGGTTCTCATTATGAATTCTTAGGAATATCACCAGAAGCTGATGTAGAAGCAATCAAAGTAGCATTCAGGAAACTTTCAAAGGAGTATCATCCAGACACAACTTCACTCCCTCTAAAAACAGCCTCAGAAAAATTCATGAAATTAAAAGAAGTTTACACTGTTCTGAGCAATGAAGAAAGTAGAAGATTCTATGATTGGACCCTTGCTCAAGAAGTTGCAAGTCGCCAACAAGAGAAACTGAAAATAAAATTAGAGGATCCTTATGAGGTAGCCTTGAAGAATTATGAACCTGTTCCAGACATGGTTGATCGTCTTGGTGGGAAGAATATGAAGCTTAGTGATCAAGCTGTTTCTGCTATCACTATTGATATTTTTATCATTATTTTTTCCATATGCTGTATCACTCATGTAGTTTTCTTTAAAGAATACTGA

Protein sequence

>Msa0635070

MGHVLNLSIPKSNHNYFFCSTLMASTATPSPQILLFNPILGNTKTIRRIRFFRITTTSNSHYSLQVHASTKDTQGPQKAPPGVDTRIHWENDDEGWIGGSTKQQQTNAEEKPKKLLGEDFADLLNFQGSHYEFLGISPEADVEAIKVAFRKLSKEYHPDTTSLPLKTASEKFMKLKEVYTVLSNEESRRFYDWTLAQEVASRQQEKLKIKLEDPYEVALKNYEPVPDMVDRLGGKNMKLSDQAVSAITIDIFIIIFSICCITHVVFFKEY*