AlfalfaGEDB | Msa0872890

M. sativa cultivar zhongmu-4 / Msa0872890

KEGG: K03695
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0006996 GO:0008150 GO:0009266 GO:0009408 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009628 GO:0009657 GO:0009658 GO:0009987 GO:0016043 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0071840
PFAM: PF02861.23

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872890	VAI11495.1	78.918	887	150	3	47	896	41	927	0.0	1424

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872890	sp\|Q9LF37\|CLPB3_ARATH	88.060	670	77	2	215	882	288	956	0.0	1216
Msa0872890	sp\|Q9LF37\|CLPB3_ARATH	66.146	192	58	2	30	219	31	217	1.37e-71	258

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872890	A0A2H5PK80	80.932	944	124	6	1	895	1	937	0.0	1509

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa0872890	0.872403	3.266489e-67	-8.615850e-47
Msa0000800	Msa0872890	-0.801165	1.024260e-48	-8.615850e-47
Msa0001510	Msa0872890	0.866282	3.194941e-65	-8.615850e-47
Msa0002110	Msa0872890	0.843970	1.009858e-58	-8.615850e-47
Msa0002690	Msa0872890	0.871766	5.321810e-67	-8.615850e-47
Msa0002700	Msa0872890	0.873100	1.910321e-67	-8.615850e-47
Msa0003340	Msa0872890	0.868006	8.992996e-66	-8.615850e-47
Msa0004180	Msa0872890	0.864797	9.390350e-65	-8.615850e-47
Msa0005500	Msa0872890	0.843506	1.343653e-58	-8.615850e-47
Msa0007570	Msa0872890	0.847428	1.163653e-59	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872890	MtrunA17_Chr6g0454071	98.048	666	11	1	215	878	290	955	0.0	1333
Msa0872890	MtrunA17_Chr6g0454071	97.260	219	6	0	1	219	1	219	5.30e-139	438
Msa0872890	MtrunA17_Chr7g0218421	92.679	683	48	1	215	895	294	976	0.0	1290
Msa0872890	MtrunA17_Chr7g0218421	72.124	226	53	4	1	219	1	223	5.13e-93	315
Msa0872890	MtrunA17_Chr3g0137071	74.888	669	165	2	215	880	302	970	0.0	1036
Msa0872890	MtrunA17_Chr3g0137071	52.349	149	70	1	71	219	84	231	6.10e-44	172
Msa0872890	MtrunA17_Chr4g0061371	56.308	650	269	5	215	858	213	853	0.0	726
Msa0872890	MtrunA17_Chr7g0225161	54.083	649	284	5	215	858	213	852	0.0	687
Msa0872890	MtrunA17_Chr8g0385811	45.352	796	348	14	84	859	174	902	0.0	623
Msa0872890	MtrunA17_Chr3g0134631	49.923	653	259	8	215	859	311	903	0.0	616

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0872890	AT5G15450.1	88.060	670	77	2	215	882	288	956	0.0	1216
Msa0872890	AT5G15450.1	66.146	192	58	2	30	219	31	217	1.39e-72	258
Msa0872890	AT2G25140.1	72.660	673	175	3	215	884	293	959	0.0	1003
Msa0872890	AT2G25140.1	47.273	165	78	4	64	228	72	227	1.83e-39	158
Msa0872890	AT1G74310.1	51.053	760	343	9	109	858	110	850	0.0	733
Msa0872890	AT1G74310.2	51.662	722	320	9	109	820	110	812	0.0	701
Msa0872890	AT5G50920.1	49.849	664	261	9	215	866	308	911	0.0	625
Msa0872890	AT3G48870.2	50.230	653	257	9	215	859	298	890	0.0	616
Msa0872890	AT3G48870.1	50.230	653	257	9	215	859	329	921	0.0	615
Msa0872890	AT3G48870.4	50.230	653	257	9	215	859	329	921	0.0	615

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Find 231 sgRNAs with CRISPR-Local

Find 492 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATACCATTTCAATACTA+AGG	0.365010	6_1:-8485552	Msa0872890:CDS
AAAATATCGGGGAGAATTTG+AGG	0.469676	6_1:-8486609	Msa0872890:CDS
AAACACTTCACTTCACCATA+TGG	0.407370	6_1:-8490679	Msa0872890:five_prime_UTR
AAACATGAAGCAGCGTGTAA+TGG	0.536079	6_1:-8483448	Msa0872890:CDS
AAAGAAGTTACAGAATCTGA+TGG	0.602939	6_1:-8486566	Msa0872890:CDS
AAAGCCTATGCTTGGTCGAG+GGG	0.589635	6_1:-8485686	Msa0872890:CDS
AAATACCATTTCAATACTAA+GGG	0.480377	6_1:-8485551	Msa0872890:CDS
AAATTCGTGTAAACTTGGCA+TGG	0.589380	6_1:+8482691	None:intergenic
AAATTTCTTCATAGAATCTG+TGG	0.517735	6_1:+8482734	None:intergenic
AACCGAAACAATGCTCAATT+GGG	0.480526	6_1:-8490520	Msa0872890:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACCCTAAACAGTTTATTGTT+CGG	-	chr6_1:8482804-8482823	Msa0872890:CDS	30.0%
ACCGAACAATAAACTGTTTA+GGG	+	chr6_1:8482808-8482827	None:intergenic	30.0%
GGAAAGGTAAAAACTTGTAT+AGG	-	chr6_1:8482842-8482861	Msa0872890:CDS	30.0%
CTATTGGATGATAGAATACA+TGG	-	chr6_1:8483125-8483144	Msa0872890:intron	30.0%
ATAGAATACATGGTTTCTGT+TGG	-	chr6_1:8483135-8483154	Msa0872890:intron	30.0%
CGGTCTAACTTAATTTAAGT+GGG	+	chr6_1:8483339-8483358	None:intergenic	30.0%
CCACTTAAATTAAGTTAGAC+CGG	-	chr6_1:8483337-8483356	Msa0872890:intron	30.0%
AACTAGACTACAATTTCAAG+GGG	+	chr6_1:8483780-8483799	None:intergenic	30.0%
CAACTAGACTACAATTTCAA+GGG	+	chr6_1:8483781-8483800	None:intergenic	30.0%
ACAACTAGACTACAATTTCA+AGG	+	chr6_1:8483782-8483801	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_1	gene	8482473	8490743	8482473	ID=Msa0872890;Name=Msa0872890
chr6_1	mRNA	8482473	8490743	8482473	ID=Msa0872890-mRNA-1;Parent=Msa0872890;Name=Msa0872890-mRNA-1;_AED=0.28;_eAED=0.28;_QI=141\|0.87\|0.88\|1\|0.87\|0.88\|9\|269\|897
chr6_1	exon	8482473	8483071	8482473	ID=Msa0872890-mRNA-1:exon:2595;Parent=Msa0872890-mRNA-1
chr6_1	exon	8483341	8484267	8483341	ID=Msa0872890-mRNA-1:exon:2594;Parent=Msa0872890-mRNA-1
chr6_1	exon	8484929	8485194	8484929	ID=Msa0872890-mRNA-1:exon:2593;Parent=Msa0872890-mRNA-1
chr6_1	exon	8485437	8485745	8485437	ID=Msa0872890-mRNA-1:exon:2592;Parent=Msa0872890-mRNA-1
chr6_1	exon	8486519	8486669	8486519	ID=Msa0872890-mRNA-1:exon:2591;Parent=Msa0872890-mRNA-1
chr6_1	exon	8486929	8486983	8486929	ID=Msa0872890-mRNA-1:exon:2590;Parent=Msa0872890-mRNA-1
chr6_1	exon	8487925	8488127	8487925	ID=Msa0872890-mRNA-1:exon:2589;Parent=Msa0872890-mRNA-1
chr6_1	exon	8488460	8488678	8488460	ID=Msa0872890-mRNA-1:exon:2588;Parent=Msa0872890-mRNA-1
chr6_1	exon	8490369	8490743	8490369	ID=Msa0872890-mRNA-1:exon:2587;Parent=Msa0872890-mRNA-1
chr6_1	five_prime_UTR	8490603	8490743	8490603	ID=Msa0872890-mRNA-1:five_prime_utr;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8490369	8490602	8490369	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8488460	8488678	8488460	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8487925	8488127	8487925	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8486929	8486983	8486929	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8486519	8486669	8486519	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8485437	8485745	8485437	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8484929	8485194	8484929	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8483341	8484267	8483341	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	CDS	8482742	8483071	8482742	ID=Msa0872890-mRNA-1:cds;Parent=Msa0872890-mRNA-1
chr6_1	three_prime_UTR	8482473	8482741	8482473	ID=Msa0872890-mRNA-1:three_prime_utr;Parent=Msa0872890-mRNA-1

Gene Sequence

>Msa0872890

ATGGCTTCAACGACGTCGTTTTCAAGTCTAATACTTCATCATTCTGTTCCAATTTCCCGGAACCGAAACAATGCTCAATTGGGTCCGTTTCAAGCGTCTTTTACCTCTCAATTGAAACCCACTTCCTTGAATTCGATTCCATTGAAGAAAAGAGAAGCTTTTTCAAATGGGTTTTCGAGAATGAGGAGAAACCCTAAACAGTTTATTGTTCGGTGTGCAGATTCAAGTGGAAAGGTTTCACAGCAAGAATTCACAGAAATGGCGTGGCAAGCGATTGTGTCATCTCCCGAAGTGGCAAAGGAGAACAAGCATCAAATTGTGGAGACAGAGCACTTGATGAAAGCTTTATTAGAGCAAAAGAATGGGCTTGCACGCCGAATCTTTACCAAGGTTGGGGTCGATAACACCCGACTTCTGGAGGCTACCGACAAGCACATTCAGCGCCAACCCAAGGTTCTAGGGGAATCAGCCGGTTCAATGTTGGGGCGTGATTTGGAGGCATTGATTCAGAGAGCCAGGGAATTCAAGAAAGAATACGGGGATTCATTTGTATCAGTTGAGCACTTGGTTCTTGGTTTTGCCCAAGATCGGCGATTTGGGAAGATATTGTTTAGAGATTTTCAAATATCTCAGCAAGCTCTAAAAACTGCTATAGAATTGGCTCAGAGAATTGTTCAAGGAGATGTCCCTCAAGCTTTGATGAATCGAAGGCTTATATCTCTTGATATGGGTGCACTTATTGCTGGAGCAAAATATCGGGGAGAATTTGAGGATAGGCTCAAAGCTGTTCTTAAAGAAGTTACAGAATCTGATGGTCAAACTATACTTTTCATTGATGAGATCCATACAGTTGTTGGGGCAGGTGCTACAAATGGTGCTATGGATGCTGGTAACCTCTTAAAGCCTATGCTTGGTCGAGGGGAACTGCGATGCATTGGTGCAACAACATTAGATGAGTATCGGAAGTATATTGAGAAGGATCCTGCACTAGAACGTCGTTTTCAGCAGGTTTATGTTGATCAACCTTCAGTTGAAAATACCATTTCAATACTAAGGGGGCTGCGGGAAAGATATGAGTTGCATCATGGAGTTCGCATTTCTGACACTGCACTTGTGGATGCTGCAATTCTCTCAGATCGATACATAAGTGGGAGATTTTTGCCTGACAAAGCTATTGATCTGGTTGACGAAGCAGCCGCTAAACTGAAAATGGAAATCACTTCTAAGCCCACTGCACTTGATGAGATTAATAGGTCAGTTTTGAAACTAGAGATGGAGAGACTATCTCTCATGAATGATACAGACAAGGCTTCTAGAGATAGGTTAAACCGTCTTGAGACAGAGCTCTCTCTCCTAAAAGAGAAACAGGGGGAGCTTACCGAGCAATGGGAACATGAAAAGTCTGTTATGACTCGTCTTCAGTCAATCAAAGAAGAGATAGACAGAGTAAACCTTGAGATTCTACAGGCCGAGCGAGAGTATGATCTAAATCGTGCTGCTGAATTAAAGTACGGCAGTTTAAATTCTTTGCAACGACAACTCGAGGGTGCAGAGAAGGAGTTACATGAATATATGAGCTCTGGTAAGTCTATGTTGAGAGAGGAAGTAACTGGGAATGATATTGGTGAAATTGTGAGCAAGTGGACTGGTATCCCGATTTCTAAACTTCAACAATCAGAGAGAGAGAAGCTATTATATTTAGAAGACGAACTCCATAAGCGTGTTGTAGGTCAAGATCCTGCTGTCAAGGCAGTTGCCGAGGCGATCCAACGTTCAAGAGCAGGTCTATCGGATCCTCATCGTCCAATCGCTAGCTTCATGTTCATGGGCCCCACAGGTGTGGGTAAGACCGAGCTAGCCAAGGCCCTAGCTTCTTACATGTTCAATACAGAAGAAGCACTTGTTCGGATTGATATGAGTGAGTACATGGAAAAGCATACGGTTTCAAGATTGATCGGTGCTCCTCCTGGATACGTTGGATACGAAGAGGGAGGGCAACTAACGGAAACAGTCCGTCGAAGACCTTATGCAGTTATTTTGTTTGATGAGATTGAAAAGGCACACTCGGATGTTTTCAATGTATTCCTTCAAATTTTGGATGATGGCAGAGTAACCGATTCACAAGGCCGCACAGTAAGTTTTACCAACACTGTCATCATCATGACCTCAAATGTGGGATCACAGTACATTCTCAACACGGATGATGACACTGCGCCAAAAGATTCGGCATATGAAAACATGAAGCAGCGTGTAATGGATGCTGCAAGATCCATTTTTCGCCCCGAGTTCATGAATAGAGTTGATGAGTATATTGTTTTCCGGCCTCTTGACCGTGACCAAATAAGTAGCATTGTCAGATTGCAGTTGGAGCGCGTGCAGAAGAGAGTTGCTGACCGCAAGATGAAAATCCGAGTAACAGAGCCTGCTATCCAACTTCTTGGAAGTTTAGGTTACGATCCAAACTATGGTGCTAGGCCGGTGAAGCGGGTGATTCAACAAAATGTGGAAAATGAACTTGCAAAGGGTATTCTTAGAGGAGAATTTAAGGAAGAGGACACAATTTTAGTCGACACAGAAGTCACAGTACTTGCCAACGGTCAACGTCCTCAGCAAAAGCTAGTGTTTAGGAGGGTTGAAGCTGATTCAGAATCTACTGCTAAAGACAGCAGGGAAAGTTTTCCACAGATTCTATGA

Protein sequence

>Msa0872890

MASTTSFSSLILHHSVPISRNRNNAQLGPFQASFTSQLKPTSLNSIPLKKREAFSNGFSRMRRNPKQFIVRCADSSGKVSQQEFTEMAWQAIVSSPEVAKENKHQIVETEHLMKALLEQKNGLARRIFTKVGVDNTRLLEATDKHIQRQPKVLGESAGSMLGRDLEALIQRAREFKKEYGDSFVSVEHLVLGFAQDRRFGKILFRDFQISQQALKTAIELAQRIVQGDVPQALMNRRLISLDMGALIAGAKYRGEFEDRLKAVLKEVTESDGQTILFIDEIHTVVGAGATNGAMDAGNLLKPMLGRGELRCIGATTLDEYRKYIEKDPALERRFQQVYVDQPSVENTISILRGLRERYELHHGVRISDTALVDAAILSDRYISGRFLPDKAIDLVDEAAAKLKMEITSKPTALDEINRSVLKLEMERLSLMNDTDKASRDRLNRLETELSLLKEKQGELTEQWEHEKSVMTRLQSIKEEIDRVNLEILQAEREYDLNRAAELKYGSLNSLQRQLEGAEKELHEYMSSGKSMLREEVTGNDIGEIVSKWTGIPISKLQQSEREKLLYLEDELHKRVVGQDPAVKAVAEAIQRSRAGLSDPHRPIASFMFMGPTGVGKTELAKALASYMFNTEEALVRIDMSEYMEKHTVSRLIGAPPGYVGYEEGGQLTETVRRRPYAVILFDEIEKAHSDVFNVFLQILDDGRVTDSQGRTVSFTNTVIIMTSNVGSQYILNTDDDTAPKDSAYENMKQRVMDAARSIFRPEFMNRVDEYIVFRPLDRDQISSIVRLQLERVQKRVADRKMKIRVTEPAIQLLGSLGYDPNYGARPVKRVIQQNVENELAKGILRGEFKEEDTILVDTEVTVLANGQRPQQKLVFRRVEADSESTAKDSRESFPQIL*