AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0048410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048410 MtrunA17_Chr1g0159621 93.600 500 31 1 1 500 1 499 0.0 957
Msa0048410 MtrunA17_Chr3g0125211 62.796 465 154 4 50 500 30 489 0.0 566
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0048410 AT1G21640.1 62.953 359 127 2 30 388 34 386 1.22e-159 481
Msa0048410 AT1G21640.2 62.953 359 127 2 30 388 34 386 1.77e-159 481

Find 246 sgRNAs with CRISPR-Local

Find 494 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAGGAGAAATTCCATTTA+AGG 0.117499 1_2:+692206 None:intergenic
GATAAAATAGTTTCTGTTCT+TGG 0.162840 1_2:-693146 Msa0048410:CDS
GAAATTCTTACCGCAATTTA+AGG 0.173847 1_2:-692029 Msa0048410:CDS
GCTTGATTCGCTGCCTAAAT+TGG 0.187801 1_2:-688480 Msa0048410:three_prime_UTR
TTCTGCTCGATTAGAATTAA+AGG 0.198861 1_2:-688868 Msa0048410:intron
TTTGGGATAATAATAAATTT+TGG 0.224648 1_2:+695680 None:intergenic
AAGGCTTCATTCTGCATTAA+TGG 0.226394 1_2:-693246 Msa0048410:CDS
CAAGGTAATGCAGCCTTAAA+TGG 0.229895 1_2:-692219 Msa0048410:CDS
GTGGGTCCTGATAGTTTAAA+TGG 0.235665 1_2:-691953 Msa0048410:exon
GGAAAAGATCCTTCCTTATC+AGG 0.258160 1_2:+692189 None:intergenic
GTCCTACACTATTTGCTAAT+TGG 0.269632 1_2:-692839 Msa0048410:CDS
TTTAACAACAGCACATTCTT+TGG 0.278780 1_2:+691494 None:intergenic
CTTGCCAGAATTCCAGGTTT+TGG 0.283366 1_2:-691109 Msa0048410:three_prime_UTR
GTCGTGGAGGGGACCAGTTC+CGG 0.285693 1_2:-693318 Msa0048410:CDS
CAAGCCTCTCGTTCCAATTT+AGG 0.290109 1_2:+688467 None:intergenic
GCGTTACTTCTAGCATCTTC+TGG 0.291203 1_2:+688628 None:intergenic
AAAGGTCACGGAATCTTCTT+TGG 0.291776 1_2:-691567 Msa0048410:three_prime_UTR
TGACACTCACTTTGGTTATA+AGG 0.293938 1_2:+690158 None:intergenic
AACAATATGCACGGAACGTT+TGG 0.298253 1_2:+688942 None:intergenic
AAATCTCCAAGGCTTGAAAA+TGG 0.303424 1_2:-691743 Msa0048410:three_prime_UTR
AAAGAAAGCTGAGATGTTCT+TGG 0.308420 1_2:-691621 Msa0048410:three_prime_UTR
GATGCAACATGCAGTTCTAT+TGG 0.311182 1_2:-692288 Msa0048410:CDS
GAATCCAAAACCTGGAATTC+TGG 0.318930 1_2:+691105 None:intergenic
AAGAATGTCTGCTATGATTC+TGG 0.319807 1_2:-692888 Msa0048410:CDS
ATTGTCATCGACCGTAATTT+CGG 0.320404 1_2:+691898 None:intergenic
TTGGCTTCCATTGTAAAGAT+AGG 0.325479 1_2:-688342 Msa0048410:three_prime_UTR
AATTCTAATCGAGCAGAATC+TGG 0.332072 1_2:+688873 None:intergenic
TACCTTGTATCATGACTAAA+AGG 0.333469 1_2:+691075 None:intergenic
CAATTTAAGGACATGGCTAT+TGG 0.337248 1_2:-692016 Msa0048410:CDS
GGCAGGGACGATGTTCTTAC+TGG 0.338007 1_2:-693098 Msa0048410:CDS
TTGTCATCGACCGTAATTTC+GGG 0.343242 1_2:+691899 None:intergenic
GCTGATCCATTTAAACTATC+AGG 0.343657 1_2:+691947 None:intergenic
GATGTACTTGCCAGAATTCC+AGG 0.343709 1_2:-691115 Msa0048410:three_prime_UTR
TCATTTAACCTTGGTTCCCT+TGG 0.351313 1_2:-690869 Msa0048410:three_prime_UTR
TTCATAGCAAGGAAGGAGTT+TGG 0.361927 1_2:-692506 Msa0048410:CDS
CACCTTCGGGCTTGACTCTC+CGG 0.365207 1_2:-695319 Msa0048410:intron
ATCTGGAGAGCCCGAAATTA+CGG 0.366087 1_2:-691909 Msa0048410:three_prime_UTR
CAATGAGGTGGTTGTTGATC+GGG 0.368521 1_2:-690227 Msa0048410:three_prime_UTR
TTCATTTCTCTTGGTGATGA+AGG 0.376732 1_2:+691163 None:intergenic
ATTTGATAATTGACATAATC+GGG 0.377033 1_2:+692061 None:intergenic
GGTGCAGTCATAACTTCAAC+TGG 0.379017 1_2:+692594 None:intergenic
AAAGCTTGGGGACGAACTAT+TGG 0.380081 1_2:-691471 Msa0048410:three_prime_UTR
TCGTGGAGGGGACCAGTTCC+GGG 0.380564 1_2:-693317 Msa0048410:CDS
AGAAAGATCCTCCCTCAAAA+AGG 0.381684 1_2:-692337 Msa0048410:CDS
CTCGCAACCTGTTCCATTGT+TGG 0.385256 1_2:+692573 None:intergenic
CGTAAAGGTAAAGCAATTCC+AGG 0.385617 1_2:-690268 Msa0048410:three_prime_UTR
CCAAGGTTAAATGACACAAT+AGG 0.386707 1_2:+690878 None:intergenic
CAAGGTTAAATGACACAATA+GGG 0.386975 1_2:+690879 None:intergenic
GACAGTGAATGTGGACAGAT+AGG 0.388238 1_2:+688915 None:intergenic
GATTTGATAATTGACATAAT+CGG 0.389848 1_2:+692060 None:intergenic
AAATGGAATTTCTCCTGATA+AGG 0.390422 1_2:-692202 Msa0048410:CDS
CATTCAATCTTTGAAAGGTA+TGG 0.404554 1_2:+690196 None:intergenic
ATGTCAATTATCAAATCAAA+AGG 0.408195 1_2:-692054 Msa0048410:CDS
GCATTATGCAATCCGTTGAC+TGG 0.408333 1_2:-693221 Msa0048410:CDS
AACAATAGATTCCTAGGCTT+GGG 0.410558 1_2:-695435 Msa0048410:CDS
GACAATCAAAAGTCTGTGAA+TGG 0.413979 1_2:-691881 Msa0048410:three_prime_UTR
CGTCGTCAACGGGAGTTGTA+AGG 0.414483 1_2:-691655 Msa0048410:three_prime_UTR
GTTAACAAGTTTGACCAAAC+AGG 0.420760 1_2:-688517 Msa0048410:three_prime_UTR
CTAACGTGGTTACTAGATAA+AGG 0.422106 1_2:-692723 Msa0048410:CDS
ACAATAACATTCATTTCTCT+TGG 0.423532 1_2:+691154 None:intergenic
AGATTCCTAGGCTTGGGCTT+GGG 0.424048 1_2:-695429 Msa0048410:CDS
GTTTCCAATGGTACTATTGT+GGG 0.424786 1_2:-691971 Msa0048410:CDS
CGCAGAGATTAGCGAGATTG+AGG 0.428348 1_2:-693045 Msa0048410:CDS
TTTCATCTCGCTTCTGAAAA+CGG 0.431248 1_2:+693004 None:intergenic
AGAATGTGATAACATGTTAG+AGG 0.432134 1_2:+692401 None:intergenic
CATCTGCTATGGTGTCTAGA+TGG 0.435337 1_2:-692479 Msa0048410:CDS
GGTGGTGGAGGTAACATGTC+AGG 0.436442 1_2:+695701 None:intergenic
GAACGAGAGGCTTGATCAAA+AGG 0.441229 1_2:-688458 Msa0048410:three_prime_UTR
TGCGGAACCAATCACCTGTT+TGG 0.443313 1_2:+688503 None:intergenic
CTAATCTCTGCGTCAAGAAA+GGG 0.444051 1_2:+693056 None:intergenic
AGTTTGACCAAACAGGTGAT+TGG 0.449654 1_2:-688510 Msa0048410:three_prime_UTR
TAGATTCCTAGGCTTGGGCT+TGG 0.450065 1_2:-695430 Msa0048410:CDS
ATGTTCTTGGTTCGGACAGA+TGG 0.453009 1_2:-691608 Msa0048410:three_prime_UTR
GACTGCACCAACAATGGAAC+AGG 0.453609 1_2:-692580 Msa0048410:CDS
AATCTATTGTTGGTGAAGAA+TGG 0.454504 1_2:+695447 None:intergenic
TTCACCAACAATAGATTCCT+AGG 0.456446 1_2:-695441 Msa0048410:CDS
TAATGCAGAATGAAGCCTTT+CGG 0.457413 1_2:+693250 None:intergenic
GATATGTGTGCGTCGTCAAC+GGG 0.459074 1_2:-691665 Msa0048410:three_prime_UTR
AGGATATCAAATACTTTCCC+TGG 0.460707 1_2:+690250 None:intergenic
CCTATTGTGTCATTTAACCT+TGG 0.460829 1_2:-690878 Msa0048410:three_prime_UTR
GGAAAGGAAGAAGGATACTA+AGG 0.463261 1_2:-695392 Msa0048410:CDS
AAGCTGAGATGTTCTTGGTT+CGG 0.463480 1_2:-691616 Msa0048410:three_prime_UTR
TCTAGTAGGACAACAGTAAA+CGG 0.468135 1_2:-691845 Msa0048410:three_prime_UTR
GCTCATGTTGATCATCCATC+TGG 0.468145 1_2:-691926 Msa0048410:three_prime_UTR
GTGAACGATGCTATTTCATC+TGG 0.471293 1_2:-692639 Msa0048410:CDS
ATACTAGCATTATATTGCAT+TGG 0.471495 1_2:-688361 Msa0048410:three_prime_UTR
GCTAATCTCTGCGTCAAGAA+AGG 0.471633 1_2:+693055 None:intergenic
CAACAATAGATTCCTAGGCT+TGG 0.473084 1_2:-695436 Msa0048410:CDS
TCAATGAGGTGGTTGTTGAT+CGG 0.473844 1_2:-690228 Msa0048410:three_prime_UTR
ATTAGCAAATAGTGTAGGAC+AGG 0.475860 1_2:+692842 None:intergenic
ACTGCATATTCTACGGCTGC+TGG 0.476774 1_2:-689946 Msa0048410:three_prime_UTR
GCTTTACGCGATGAAGAGTT+GGG 0.476938 1_2:-691701 Msa0048410:three_prime_UTR
AGCTTTACGCGATGAAGAGT+TGG 0.477808 1_2:-691702 Msa0048410:three_prime_UTR
TGTTTCCAATGGTACTATTG+TGG 0.479120 1_2:-691972 Msa0048410:CDS
TTTAAGCTCCGATCATCATC+AGG 0.480457 1_2:+692936 None:intergenic
CAAGGTGATGGAGTCATTGT+TGG 0.482346 1_2:-689985 Msa0048410:three_prime_UTR
ACGCACACATATCGCCTTCA+AGG 0.482866 1_2:+691675 None:intergenic
ATGATCGGAGCTTAAATGTA+TGG 0.483058 1_2:-692929 Msa0048410:CDS
TCCTTGCTATGAAGATAGAT+AGG 0.483132 1_2:+692516 None:intergenic
GCAAGTACATCATGCACATC+AGG 0.487460 1_2:+691127 None:intergenic
TAAAAGCTCAGTTCCTCCTC+CGG 0.488426 1_2:-692140 Msa0048410:CDS
GTTCATGTCTTTCAGGTACA+AGG 0.490225 1_2:-690003 Msa0048410:intron
CATAGCATTCAATCTTTGAA+AGG 0.491325 1_2:+690191 None:intergenic
CCACAAAATCTACTTTCTCA+TGG 0.493285 1_2:+690962 None:intergenic
TGGCTTCCATTGTAAAGATA+GGG 0.493982 1_2:-688341 Msa0048410:three_prime_UTR
AACGCGTGGGTCTCGTTCGA+TGG 0.496395 1_2:-688610 Msa0048410:three_prime_UTR
TGATAGATCATGGGATTGGA+AGG 0.500969 1_2:+693346 None:intergenic
AGTTTCTGTTCTTGGATGCA+TGG 0.501044 1_2:-693138 Msa0048410:CDS
CTTACCGCAATTTAAGGACA+TGG 0.501593 1_2:-692023 Msa0048410:CDS
CTGAAGTCGAGGCATATTGT+AGG 0.503127 1_2:-693286 Msa0048410:CDS
CTCAGCAACAGATGCTTATG+TGG 0.506563 1_2:-691526 Msa0048410:three_prime_UTR
GACTTAAGACAAGTCATTCA+CGG 0.506567 1_2:-690352 Msa0048410:three_prime_UTR
GATGCTCACTCATATGTATC+CGG 0.508423 1_2:+688551 None:intergenic
AGTATCAAAGGAAAGGAAGA+AGG 0.510086 1_2:-695401 Msa0048410:CDS
ACAATCAAAAGTCTGTGAAT+GGG 0.511700 1_2:-691880 Msa0048410:three_prime_UTR
CATTATGCAATCCGTTGACT+GGG 0.511984 1_2:-693220 Msa0048410:CDS
TCAGCAATATCACCCGGAAC+TGG 0.514753 1_2:+693305 None:intergenic
GGAATGCTTCTAGTTCTAGT+AGG 0.516272 1_2:-691859 Msa0048410:three_prime_UTR
CAAGCCTAGGAATCTATTGT+TGG 0.519309 1_2:+695437 None:intergenic
TCTCAAGAGGAGACTCAGTC+CGG 0.520016 1_2:-688570 Msa0048410:three_prime_UTR
TTTAAGAAAGCAATAAATTG+TGG 0.521143 1_2:-688192 Msa0048410:three_prime_UTR
GAAGAGTTGGGATCCCTTGA+AGG 0.521799 1_2:-691689 Msa0048410:three_prime_UTR
CAGGCATTAAATAATTCTGA+AGG 0.522487 1_2:+692955 None:intergenic
CGATATGTGTGCGTCGTCAA+CGG 0.524377 1_2:-691666 Msa0048410:three_prime_UTR
GAAAATGGAACAGTCAAGGC+CGG 0.525663 1_2:-691728 Msa0048410:three_prime_UTR
GAAATTGTCTCTTACAGTCT+CGG 0.527981 1_2:+692674 None:intergenic
TATCCCTCGTGAACAAAGGC+AGG 0.528597 1_2:-693115 Msa0048410:CDS
GTAATTTCGGGCTCTCCAGA+TGG 0.529696 1_2:+691911 None:intergenic
GTCATTGTTGGAACTCCTAC+GGG 0.534827 1_2:-689973 Msa0048410:three_prime_UTR
TACGGCTGCTGGAGGTTCCA+TGG 0.536543 1_2:-689935 Msa0048410:intron
AGATGAAATAGCATCGTTCA+CGG 0.537270 1_2:+692641 None:intergenic
AAATAGCTCTGCAAAACTGC+AGG 0.538113 1_2:-692376 Msa0048410:CDS
AGGACCCACAATAGTACCAT+TGG 0.538672 1_2:+691967 None:intergenic
CGTCCCTGCCTTTGTTCACG+AGG 0.538884 1_2:+693111 None:intergenic
ACAGTGAATGTGGACAGATA+GGG 0.540155 1_2:+688916 None:intergenic
GTCTTTCAGGTACAAGGTGA+TGG 0.540615 1_2:-689997 Msa0048410:intron
ATGGTGTCTACATTACTCTA+AGG 0.541109 1_2:-690315 Msa0048410:three_prime_UTR
GCTTGGGCTTTGAGTATCAA+AGG 0.544651 1_2:-695413 Msa0048410:CDS
GGCTTTGAGTATCAAAGGAA+AGG 0.544773 1_2:-695408 Msa0048410:CDS
TGGTCAAACTTGTTAACAGT+TGG 0.545206 1_2:+688523 None:intergenic
TCAAGGGGAATTACATTACA+TGG 0.545720 1_2:-691816 Msa0048410:three_prime_UTR
GAATGTGATAACATGTTAGA+GGG 0.546145 1_2:+692402 None:intergenic
TCGCTTCTGAAAACGGCAAG+TGG 0.547859 1_2:+693011 None:intergenic
AAGAGAAATGAATGTTATTG+TGG 0.547969 1_2:-691152 Msa0048410:three_prime_UTR
TTCTGAAAACGGCAAGTGGA+GGG 0.548295 1_2:+693015 None:intergenic
ATGTTACAGATAGCAGCAAA+AGG 0.548480 1_2:-692539 Msa0048410:CDS
GTCTGCACGAATCCAAAACC+TGG 0.548544 1_2:+691097 None:intergenic
GGAATGTAGCGTCTCGTATG+AGG 0.551593 1_2:-693198 Msa0048410:CDS
ATTTAATGCCTGATGATGAT+CGG 0.551924 1_2:-692944 Msa0048410:CDS
GCAGAATCTGGAAGTATGAC+AGG 0.553043 1_2:+688885 None:intergenic
GCCTATCTATCTTCATAGCA+AGG 0.556380 1_2:-692517 Msa0048410:CDS
GGGAAGTACTGCATATTCTA+CGG 0.557056 1_2:-689953 Msa0048410:three_prime_UTR
AGTCATTGTTGGAACTCCTA+CGG 0.557721 1_2:-689974 Msa0048410:three_prime_UTR
GGAATTTCTCCTGATAAGGA+AGG 0.557805 1_2:-692198 Msa0048410:CDS
AAGAAAGGGGTTCATAATTG+AGG 0.558581 1_2:+693070 None:intergenic
TGTCAATTATCAAATCAAAA+GGG 0.561271 1_2:-692053 Msa0048410:CDS
GTATGTAGTTTGACGACTAC+AGG 0.561542 1_2:-690378 Msa0048410:intron
AGTTATGACTGCACCAACAA+TGG 0.561997 1_2:-692586 Msa0048410:CDS
TTGGAAAAGATATCCGGAGG+AGG 0.566248 1_2:+692127 None:intergenic
GGCAAACCCTATCTTTACAA+TGG 0.567433 1_2:+688335 None:intergenic
GGTGGTCAGGTAACAGAAGA+AGG 0.568302 1_2:-692747 Msa0048410:CDS
TTCTTCTTCTAAAGAAGACA+CGG 0.570642 1_2:-692802 Msa0048410:CDS
AGAAGACAACAGCTCTCAAG+AGG 0.570976 1_2:-688583 Msa0048410:three_prime_UTR
ATCTATCTTCATAGCAAGGA+AGG 0.571744 1_2:-692513 Msa0048410:CDS
AAACTTGTTAACAGTTGGAA+GGG 0.572633 1_2:+688528 None:intergenic
CAAACTTGTTAACAGTTGGA+AGG 0.574187 1_2:+688527 None:intergenic
AGCATCTGTTGCTGAGTGCT+AGG 0.576041 1_2:+691533 None:intergenic
ATATGCACGGAACGTTTGGA+TGG 0.577570 1_2:+688946 None:intergenic
CAAAGCCCAAGCCCAAGCCT+AGG 0.577807 1_2:+695424 None:intergenic
AATGAGGTGGTTGTTGATCG+GGG 0.579010 1_2:-690226 Msa0048410:three_prime_UTR
ACGCTACATTCCCCAGTCAA+CGG 0.582989 1_2:+693209 None:intergenic
AACTTGTTAACAGTTGGAAG+GGG 0.584585 1_2:+688529 None:intergenic
CAGTGAATGTGGACAGATAG+GGG 0.586339 1_2:+688917 None:intergenic
ACAGTAAACGGATCAAGTCA+AGG 0.588409 1_2:-691833 Msa0048410:three_prime_UTR
AGAAGAAGTTGAATGAACTA+CGG 0.588609 1_2:+695497 None:intergenic
GAAGGTGAATGAAAATGACT+TGG 0.590526 1_2:+695335 None:intergenic
CTTCTGAAAACGGCAAGTGG+AGG 0.591574 1_2:+693014 None:intergenic
AAGGGCAACATGTAAACTCT+CGG 0.591706 1_2:+692974 None:intergenic
CACGGAAATACTTCACGAGA+TGG 0.591942 1_2:-690334 Msa0048410:three_prime_UTR
CAGTAAACGGATCAAGTCAA+GGG 0.592433 1_2:-691832 Msa0048410:three_prime_UTR
ATCTATCAAAATTGTCGTGG+AGG 0.592616 1_2:-693331 Msa0048410:CDS
GGAGTCTGAAGAATTAGAAA+CGG 0.593217 1_2:-692781 Msa0048410:CDS
AAAATGGAACAGTCAAGGCC+GGG 0.593920 1_2:-691727 Msa0048410:three_prime_UTR
GTCGTCAACGGGAGTTGTAA+GGG 0.596339 1_2:-691654 Msa0048410:three_prime_UTR
TCTATCAAAATTGTCGTGGA+GGG 0.596698 1_2:-693330 Msa0048410:CDS
AAGAGACAATTTCTATCAAG+CGG 0.601979 1_2:-692664 Msa0048410:CDS
GTCCCTGCCTTTGTTCACGA+GGG 0.602787 1_2:+693112 None:intergenic
GGAGATGTGGTTGTTTCCAA+TGG 0.604328 1_2:-691983 Msa0048410:CDS
CAACAATGGAACAGGTTGCG+AGG 0.605355 1_2:-692572 Msa0048410:CDS
CGCACACATATCGCCTTCAA+GGG 0.605429 1_2:+691676 None:intergenic
GGTCTAAATGACAGTGAATG+TGG 0.605581 1_2:+688906 None:intergenic
ATTCACAACGGCAGAGACGT+CGG 0.606609 1_2:+691787 None:intergenic
AGTTTGGAGATCATCTGCTA+TGG 0.609973 1_2:-692490 Msa0048410:CDS
CTATCAAAATTGTCGTGGAG+GGG 0.610398 1_2:-693329 Msa0048410:CDS
ATGATCTATCAAAATTGTCG+TGG 0.611392 1_2:-693334 Msa0048410:CDS
GGGACGATGTTCTTACTGGA+AGG 0.612837 1_2:-693094 Msa0048410:CDS
GTAAAGATAGGGTTTGCCAA+TGG 0.613072 1_2:-688330 Msa0048410:three_prime_UTR
ATGGCTATTGGAAGACGTGA+AGG 0.614015 1_2:-692004 Msa0048410:CDS
ATGTAACAACAAAATCTCCA+AGG 0.614207 1_2:-691754 Msa0048410:three_prime_UTR
GCATATTCTACGGCTGCTGG+AGG 0.614349 1_2:-689943 Msa0048410:three_prime_UTR
AGGCATTAAATAATTCTGAA+GGG 0.616351 1_2:+692956 None:intergenic
ATTTGATATCCTCAATGAGG+TGG 0.621324 1_2:-690239 Msa0048410:three_prime_UTR
GTAAAGGTAAAGCAATTCCA+GGG 0.621381 1_2:-690267 Msa0048410:three_prime_UTR
GCTGCCTAAATTGGAACGAG+AGG 0.621399 1_2:-688471 Msa0048410:three_prime_UTR
TAATCTCTGCGTCAAGAAAG+GGG 0.622731 1_2:+693057 None:intergenic
GCTTGAAAATGGAACAGTCA+AGG 0.623908 1_2:-691732 Msa0048410:three_prime_UTR
GATCAACAACCACCTCATTG+AGG 0.631885 1_2:+690230 None:intergenic
GAAGAGTTTGAGAACAAACA+TGG 0.631926 1_2:+695471 None:intergenic
TACCGGAGAGTCAAGCCCGA+AGG 0.636841 1_2:+695317 None:intergenic
TCAGAAAACCAAGGGAACCA+AGG 0.637128 1_2:+690861 None:intergenic
ATGGTATCCCTCGTGAACAA+AGG 0.637915 1_2:-693119 Msa0048410:CDS
GGGTGATATTGCTGAAGTCG+AGG 0.638757 1_2:-693297 Msa0048410:CDS
CCGATGTAAAACTCTTAACA+CGG 0.639133 1_2:+688113 None:intergenic
CTGCTATGGTGTCTAGATGG+AGG 0.639306 1_2:-692476 Msa0048410:CDS
ATGAGAAGTCAGAAAACCAA+GGG 0.643195 1_2:+690853 None:intergenic
GGTAGTTTAACTAACACCAA+TGG 0.644329 1_2:-695544 Msa0048410:exon
ATCGGAGCTTAAATGTATGG+AGG 0.646616 1_2:-692926 Msa0048410:CDS
AAGGTTAAATGACACAATAG+GGG 0.650139 1_2:+690880 None:intergenic
TTGTACTAGAGAAAAGGTCA+CGG 0.651293 1_2:-691579 Msa0048410:three_prime_UTR
ATGTGATAACATGTTAGAGG+GGG 0.656764 1_2:+692404 None:intergenic
GGATCTTTAGAAACTCCGAA+AGG 0.657111 1_2:-693265 Msa0048410:CDS
ATCCCTCGTGAACAAAGGCA+GGG 0.658686 1_2:-693114 Msa0048410:CDS
AATGTGATAACATGTTAGAG+GGG 0.659803 1_2:+692403 None:intergenic
TTCATCGCGTAAAGCTAACC+CGG 0.661753 1_2:+691709 None:intergenic
ATAGCCATGTCCTTAAATTG+CGG 0.663244 1_2:+692019 None:intergenic
GTGCAGTCATAACTTCAACT+GGG 0.663724 1_2:+692595 None:intergenic
AGTATTTGATATCCTCAATG+AGG 0.664737 1_2:-690242 Msa0048410:three_prime_UTR
TCGACTTCAGCAATATCACC+CGG 0.665510 1_2:+693299 None:intergenic
GAATATGCAGTACTTCCCGT+AGG 0.667616 1_2:+689958 None:intergenic
AGATGCTAGAAGTAACGCGT+GGG 0.672147 1_2:-688623 Msa0048410:three_prime_UTR
ATGTCGATACATGCTACCAT+TGG 0.674166 1_2:+695528 None:intergenic
TATGAGAAGTCAGAAAACCA+AGG 0.675077 1_2:+690852 None:intergenic
TGATAATTGACATAATCGGG+AGG 0.681483 1_2:+692064 None:intergenic
AAGATGCTAGAAGTAACGCG+TGG 0.681498 1_2:-688624 Msa0048410:three_prime_UTR
AATGGTAGCATGTATCGACA+TGG 0.683537 1_2:-695526 Msa0048410:CDS
TGGAAGACGTGAAGGAGATG+TGG 0.685338 1_2:-691996 Msa0048410:CDS
CACCAATTAGCAAATAGTGT+AGG 0.686349 1_2:+692837 None:intergenic
ATAGGGGTAAACAATATGCA+CGG 0.689744 1_2:+688933 None:intergenic
AGTAAACGGATCAAGTCAAG+GGG 0.695048 1_2:-691831 Msa0048410:three_prime_UTR
AAGTATGATGAGAAAACACA+AGG 0.702953 1_2:-692237 Msa0048410:CDS
AGGTTAAATGACACAATAGG+GGG 0.703331 1_2:+690881 None:intergenic
CAGGGATAACCCTCACCACG+AGG 0.704430 1_2:+692861 None:intergenic
TTAGCAAATAGTGTAGGACA+GGG 0.706605 1_2:+692843 None:intergenic
TTAGGCAGCGAATCAAGCTG+CGG 0.712248 1_2:+688485 None:intergenic
ATTATGCAATCCGTTGACTG+GGG 0.726680 1_2:-693219 Msa0048410:CDS
TAACAGAAGAAGGACTAACG+TGG 0.741335 1_2:-692737 Msa0048410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTGTTTATTTTGTTTA+AGG + chr1_2:688203-688222 None:intergenic 10.0%
!!! ATGTGTATTTTAAATTTTTA+TGG - chr1_2:688894-688913 Msa0048410:three_prime_UTR 10.0%
!! ATTATTATTATTATTCACAA+CGG + chr1_2:692052-692071 None:intergenic 10.0%
!!! TTCAAATCATAATTTATTTT+AGG - chr1_2:693005-693024 Msa0048410:CDS 10.0%
!!! ATTTTATCATACAATAATAT+CGG - chr1_2:693378-693397 Msa0048410:intron 10.0%
!!! TATTTGAAATTAACATTTTA+AGG - chr1_2:695128-695147 Msa0048410:intron 10.0%
!!! TTTGGGATAATAATAAATTT+TGG + chr1_2:688147-688166 None:intergenic 15.0%
!! AATGAAAATGAAAAAAGTTT+GGG + chr1_2:688164-688183 None:intergenic 15.0%
!! TAATGAAAATGAAAAAAGTT+TGG + chr1_2:688165-688184 None:intergenic 15.0%
!!! TTAAAAATTTAGAATAGACA+TGG - chr1_2:692417-692436 Msa0048410:CDS 15.0%
!! GAAACATTAAATTTAGTTAA+AGG + chr1_2:693049-693068 None:intergenic 15.0%
!! ATAGATGAAAAATTAAAGTT+TGG + chr1_2:693143-693162 None:intergenic 15.0%
!!! AAATATTAGATTTATTTTCC+TGG - chr1_2:693944-693963 Msa0048410:intron 15.0%
!!! GGAAAATTAAAATTTTGTTT+GGG + chr1_2:694302-694321 None:intergenic 15.0%
!!! TGGAAAATTAAAATTTTGTT+TGG + chr1_2:694303-694322 None:intergenic 15.0%
!!! ATAATAATAAATTTTGGTGG+TGG + chr1_2:688141-688160 None:intergenic 20.0%
!! CGATAATAACATAACATATT+AGG + chr1_2:688564-688583 None:intergenic 20.0%
!! GTCACTTGAAATAATTAAAT+AGG - chr1_2:688635-688654 Msa0048410:intron 20.0%
!! TATTAAATTCCTTAACAAGA+AGG + chr1_2:688730-688749 None:intergenic 20.0%
!!! TATGAAATGAAATTTTTAGC+TGG - chr1_2:688768-688787 Msa0048410:intron 20.0%
!!! TCTTTTCTAATAGTTTTTCT+AGG + chr1_2:689202-689221 None:intergenic 20.0%
!!! ATATTTTAGATAGACCATTA+TGG - chr1_2:689232-689251 Msa0048410:intron 20.0%
!! ATGCATATTATAGATTCATT+TGG - chr1_2:689916-689935 Msa0048410:intron 20.0%
!!! AGGAATTCAAATTCTAAAAA+TGG + chr1_2:690461-690480 None:intergenic 20.0%
!! TTAGAAGAAGAAAAATATAC+AGG + chr1_2:691014-691033 None:intergenic 20.0%
!!! ATTTGATAATTGACATAATC+GGG + chr1_2:691766-691785 None:intergenic 20.0%
!!! GATTTGATAATTGACATAAT+CGG + chr1_2:691767-691786 None:intergenic 20.0%
!! ATGTCAATTATCAAATCAAA+AGG - chr1_2:691770-691789 Msa0048410:three_prime_UTR 20.0%
!! TGTCAATTATCAAATCAAAA+GGG - chr1_2:691771-691790 Msa0048410:three_prime_UTR 20.0%
!!! ATAATTTTCTTTGACTCTAA+TGG - chr1_2:692393-692412 Msa0048410:CDS 20.0%
!! ACTAAATTTAATGTTTCAAC+AGG - chr1_2:693052-693071 Msa0048410:CDS 20.0%
!! ACACGAGAAAAAAATAATAA+AGG + chr1_2:693079-693098 None:intergenic 20.0%
!! ATTGTTACCAAATTATTTCA+AGG + chr1_2:693978-693997 None:intergenic 20.0%
!!! ATTGACTTTGAATTTGTTTT+GGG + chr1_2:694363-694382 None:intergenic 20.0%
!!! TATTGACTTTGAATTTGTTT+TGG + chr1_2:694364-694383 None:intergenic 20.0%
!! TTAGCATAACAAAATTATAC+TGG - chr1_2:694612-694631 Msa0048410:intron 20.0%
!!! AATTTTAGTGTAAGAAACAT+CGG + chr1_2:694746-694765 None:intergenic 20.0%
!! GTAAATTAAATCATTCTCTT+CGG - chr1_2:694978-694997 Msa0048410:intron 20.0%
!! ATAATATGTTGAAAAACCAT+TGG + chr1_2:695513-695532 None:intergenic 20.0%
!! TTTAAGAAAGCAATAAATTG+TGG - chr1_2:695564-695583 Msa0048410:intron 20.0%
!! GGGATAATAATAAATTTTGG+TGG + chr1_2:688144-688163 None:intergenic 25.0%
! AAAGAATTAAAGAAGATCGT+TGG - chr1_2:688255-688274 Msa0048410:three_prime_UTR 25.0%
! TAATTAAATAGGACACTTTG+CGG - chr1_2:688646-688665 Msa0048410:intron 25.0%
! ATTATACTTCCTTCTTGTTA+AGG - chr1_2:688718-688737 Msa0048410:intron 25.0%
! TACTTTAAGCAAGCTTAAAT+TGG + chr1_2:689425-689444 None:intergenic 25.0%
! CATTTATTCATCGAATAACT+CGG - chr1_2:689461-689480 Msa0048410:intron 25.0%
! ATTTATTCATCGAATAACTC+GGG - chr1_2:689462-689481 Msa0048410:intron 25.0%
! GAAATTGTTTGAAGATTGAT+TGG + chr1_2:689507-689526 None:intergenic 25.0%
! ATTTAACATGGTATTAGAGT+CGG + chr1_2:689591-689610 None:intergenic 25.0%
! ACTCTAATACCATGTTAAAT+GGG - chr1_2:689591-689610 Msa0048410:intron 25.0%
!! CATCCTTTGAATTATCTTTT+GGG + chr1_2:689629-689648 None:intergenic 25.0%
!! TCATCCTTTGAATTATCTTT+TGG + chr1_2:689630-689649 None:intergenic 25.0%
! AAAAGATAATTCAAAGGATG+AGG - chr1_2:689629-689648 Msa0048410:intron 25.0%
! AAAGATAATTCAAAGGATGA+GGG - chr1_2:689630-689649 Msa0048410:intron 25.0%
!! TTTGGTGTATAAATGTGTTT+GGG + chr1_2:689658-689677 None:intergenic 25.0%
!!! TTTTGGTGTATAAATGTGTT+TGG + chr1_2:689659-689678 None:intergenic 25.0%
! ATTTATACACCAAAAAACCT+GGG - chr1_2:689664-689683 Msa0048410:intron 25.0%
!! ATTTTGTCAAAATTGCAATG+TGG - chr1_2:689737-689756 Msa0048410:intron 25.0%
! CAAGTTCACATTCAAAAAAA+TGG + chr1_2:689886-689905 None:intergenic 25.0%
! TCTATAATATGCATCAAGAT+TGG + chr1_2:689910-689929 None:intergenic 25.0%
!!! ATAGTTTAGTTCTTCTAACT+TGG - chr1_2:690016-690035 Msa0048410:intron 25.0%
! AAATGCGGAAATTCATTTAA+GGG + chr1_2:690343-690362 None:intergenic 25.0%
! AAAATGCGGAAATTCATTTA+AGG + chr1_2:690344-690363 None:intergenic 25.0%
!!! ACTATTTTATCTTCAAGTTG+AGG + chr1_2:690669-690688 None:intergenic 25.0%
! GATAAAATAGTTTCTGTTCT+TGG - chr1_2:690678-690697 Msa0048410:intron 25.0%
! AGGCATTAAATAATTCTGAA+GGG + chr1_2:690871-690890 None:intergenic 25.0%
!! AGAAGTAATATCCTTTTTGA+GGG + chr1_2:691501-691520 None:intergenic 25.0%
!! ATTTTCTTGTACTAGAGAAA+AGG - chr1_2:692239-692258 Msa0048410:CDS 25.0%
! AGTTTCTGTAGTTAATGTAT+AGG - chr1_2:692446-692465 Msa0048410:CDS 25.0%
! TATAGAAACTGGATTAAGAA+TGG + chr1_2:692618-692637 None:intergenic 25.0%
! ACAATAACATTCATTTCTCT+TGG + chr1_2:692673-692692 None:intergenic 25.0%
! AAGAGAAATGAATGTTATTG+TGG - chr1_2:692672-692691 Msa0048410:CDS 25.0%
! CATCTATGTTACAATAATTG+TGG - chr1_2:693156-693175 Msa0048410:CDS 25.0%
! AAATAAAGACAACTACATCA+GGG + chr1_2:693362-693381 None:intergenic 25.0%
! AAAATAAAGACAACTACATC+AGG + chr1_2:693363-693382 None:intergenic 25.0%
! CTTTACGAAAAATTTCACAT+CGG + chr1_2:693543-693562 None:intergenic 25.0%
! TGATAAATTTCAGTCATTGT+TGG - chr1_2:694000-694019 Msa0048410:intron 25.0%
! AAAATAAGTGAAAGAACACA+TGG + chr1_2:694255-694274 None:intergenic 25.0%
! ACAAATCATATTGGATTTCA+TGG - chr1_2:695004-695023 Msa0048410:intron 25.0%
!! TGAATTATGATTTTGGATCT+AGG - chr1_2:695101-695120 Msa0048410:intron 25.0%
!!! AACATTTTAAGGTTTTGCTA+AGG - chr1_2:695139-695158 Msa0048410:intron 25.0%
! TGCTAAGGATATAAGTTATA+TGG - chr1_2:695154-695173 Msa0048410:intron 25.0%
! GATATAAGTTATATGGTGTT+TGG - chr1_2:695161-695180 Msa0048410:intron 25.0%
! ATACTAGCATTATATTGCAT+TGG - chr1_2:695463-695482 Msa0048410:CDS 25.0%
!!! GGTTTTTCAACATATTATGA+TGG - chr1_2:695515-695534 Msa0048410:CDS 25.0%
!!! TATATCATTTTGAAGCAACT+TGG - chr1_2:695664-695683 Msa0048410:five_prime_UTR 25.0%
!!! ATATCATTTTGAAGCAACTT+GGG - chr1_2:695665-695684 Msa0048410:five_prime_UTR 25.0%
!!! ATAATAAATTTTGGTGGTGG+AGG + chr1_2:688138-688157 None:intergenic 30.0%
AATTAAAGAAGATCGTTGGT+AGG - chr1_2:688259-688278 Msa0048410:three_prime_UTR 30.0%
AGAAGAAGTTGAATGAACTA+CGG + chr1_2:688330-688349 None:intergenic 30.0%
! AATCTATTGTTGGTGAAGAA+TGG + chr1_2:688380-688399 None:intergenic 30.0%
!! AAGTCATTTTCATTCACCTT+CGG - chr1_2:688491-688510 Msa0048410:three_prime_UTR 30.0%
! ATAAGTATAAGAGAGTGTAC+CGG + chr1_2:688527-688546 None:intergenic 30.0%
AAGATCACTTGTGTTATGTT+AGG - chr1_2:688825-688844 Msa0048410:intron 30.0%
AGACTAGACAAGATAAGATT+AGG - chr1_2:689015-689034 Msa0048410:intron 30.0%
ACACAATTAGAGAGAAAGTT+CGG - chr1_2:689042-689061 Msa0048410:intron 30.0%
TAGAAAAGATGATAGAAACC+AGG - chr1_2:689078-689097 Msa0048410:intron 30.0%
TTGATCGAATTATGCCATAA+TGG + chr1_2:689249-689268 None:intergenic 30.0%
AGCTTAAATTGGTATTAGAG+TGG + chr1_2:689414-689433 None:intergenic 30.0%
TTTAACATGGTATTAGAGTC+GGG + chr1_2:689590-689609 None:intergenic 30.0%
GACTCTAATACCATGTTAAA+TGG - chr1_2:689590-689609 Msa0048410:intron 30.0%
CATCCCAAAAGATAATTCAA+AGG - chr1_2:689623-689642 Msa0048410:intron 30.0%
CATTTATACACCAAAAAACC+TGG - chr1_2:689663-689682 Msa0048410:intron 30.0%
TTTGTATGTGTTCTTCACTT+AGG - chr1_2:690071-690090 Msa0048410:intron 30.0%
! GCTCTTTTCATAAGCTATTT+TGG - chr1_2:690206-690225 Msa0048410:three_prime_UTR 30.0%
!! TTTCATAAGCTATTTTGGAG+AGG - chr1_2:690211-690230 Msa0048410:three_prime_UTR 30.0%
AACTCTTGAACTTAATGTCA+TGG - chr1_2:690399-690418 Msa0048410:intron 30.0%
!! ATTTTGATAGATCATGGGAT+TGG + chr1_2:690485-690504 None:intergenic 30.0%
!! CGACAATTTTGATAGATCAT+GGG + chr1_2:690490-690509 None:intergenic 30.0%
!! ACGACAATTTTGATAGATCA+TGG + chr1_2:690491-690510 None:intergenic 30.0%
ATGATCTATCAAAATTGTCG+TGG - chr1_2:690490-690509 Msa0048410:intron 30.0%
CAGGCATTAAATAATTCTGA+AGG + chr1_2:690872-690891 None:intergenic 30.0%
! ATTTAATGCCTGATGATGAT+CGG - chr1_2:690880-690899 Msa0048410:three_prime_UTR 30.0%
! TTCTTCTTCTAAAGAAGACA+CGG - chr1_2:691022-691041 Msa0048410:intron 30.0%
! AAGAATTAGAAACGGCTTTT+TGG - chr1_2:691051-691070 Msa0048410:intron 30.0%
AAGAGACAATTTCTATCAAG+CGG - chr1_2:691160-691179 Msa0048410:three_prime_UTR 30.0%
AATGTGATAACATGTTAGAG+GGG + chr1_2:691424-691443 None:intergenic 30.0%
GAATGTGATAACATGTTAGA+GGG + chr1_2:691425-691444 None:intergenic 30.0%
AGAATGTGATAACATGTTAG+AGG + chr1_2:691426-691445 None:intergenic 30.0%
! CAGAAGTAATATCCTTTTTG+AGG + chr1_2:691502-691521 None:intergenic 30.0%
AAGTATGATGAGAAAACACA+AGG - chr1_2:691587-691606 Msa0048410:three_prime_UTR 30.0%
ATCAGGAGAAATTCCATTTA+AGG + chr1_2:691621-691640 None:intergenic 30.0%
AAATGGAATTTCTCCTGATA+AGG - chr1_2:691622-691641 Msa0048410:three_prime_UTR 30.0%
TTAATCTTGCTGGAAAAACT+TGG + chr1_2:691659-691678 None:intergenic 30.0%
!! TTTTAAAGGGTTAATCTTGC+TGG + chr1_2:691669-691688 None:intergenic 30.0%
!!! GCTTTTTTGGAAAAGATATC+CGG + chr1_2:691706-691725 None:intergenic 30.0%
GAAATTCTTACCGCAATTTA+AGG - chr1_2:691795-691814 Msa0048410:three_prime_UTR 30.0%
ACAATCAAAAGTCTGTGAAT+GGG - chr1_2:691944-691963 Msa0048410:exon 30.0%
ATGTAACAACAAAATCTCCA+AGG - chr1_2:692070-692089 Msa0048410:CDS 30.0%
TTTAACAACAGCACATTCTT+TGG + chr1_2:692333-692352 None:intergenic 30.0%
TGCTGTTGTTAAAAAAGCTT+GGG - chr1_2:692340-692359 Msa0048410:CDS 30.0%
ACTATTGGAAGAAGCAAAAA+TGG - chr1_2:692368-692387 Msa0048410:CDS 30.0%
TGCAGATTAGATATAGAAAC+TGG + chr1_2:692629-692648 None:intergenic 30.0%
AGTTTCTATATCTAATCTGC+AGG - chr1_2:692628-692647 Msa0048410:CDS 30.0%
TACCTTGTATCATGACTAAA+AGG + chr1_2:692752-692771 None:intergenic 30.0%
AAGGTTAAATGACACAATAG+GGG + chr1_2:692947-692966 None:intergenic 30.0%
CAAGGTTAAATGACACAATA+GGG + chr1_2:692948-692967 None:intergenic 30.0%
TAAATTTAGTTAAAGGACGC+TGG + chr1_2:693042-693061 None:intergenic 30.0%
TGTCAACAAATTTGTAACAG+AGG - chr1_2:693223-693242 Msa0048410:CDS 30.0%
! TAAAAATGAAGGTTGGTTCA+AGG - chr1_2:693251-693270 Msa0048410:CDS 30.0%
AATAAAGACAACTACATCAG+GGG + chr1_2:693361-693380 None:intergenic 30.0%
! CGATGTGAAATTTTTCGTAA+AGG - chr1_2:693541-693560 Msa0048410:intron 30.0%
AGTATTTGATATCCTCAATG+AGG - chr1_2:693582-693601 Msa0048410:intron 30.0%
! CATTCAATCTTTGAAAGGTA+TGG + chr1_2:693631-693650 None:intergenic 30.0%
CATAGCATTCAATCTTTGAA+AGG + chr1_2:693636-693655 None:intergenic 30.0%
ATGAACATCTGTCATATAGA+AGG + chr1_2:693807-693826 None:intergenic 30.0%
ATCCATGCCTTGAAATAATT+TGG - chr1_2:693968-693987 Msa0048410:intron 30.0%
TACCAAATTATTTCAAGGCA+TGG + chr1_2:693973-693992 None:intergenic 30.0%
AGCATCATAAACACTTCTTT+AGG - chr1_2:694143-694162 Msa0048410:intron 30.0%
!!! AAACCCTTGTTTTTGATACA+AGG + chr1_2:694185-694204 None:intergenic 30.0%
!! AAATTTTGTTTGGGATGACA+TGG + chr1_2:694293-694312 None:intergenic 30.0%
! CACATGTTCTAGATGTTTAT+GGG + chr1_2:694410-694429 None:intergenic 30.0%
! TCACATGTTCTAGATGTTTA+TGG + chr1_2:694411-694430 None:intergenic 30.0%
! AACATCTAGAACATGTGATA+TGG - chr1_2:694413-694432 Msa0048410:intron 30.0%
! ACATCTAGAACATGTGATAT+GGG - chr1_2:694414-694433 Msa0048410:intron 30.0%
GTCTTTAATAACATGCTAGA+CGG + chr1_2:694510-694529 None:intergenic 30.0%
AAACAAACTAGAGTAGACTA+GGG - chr1_2:694530-694549 Msa0048410:intron 30.0%
GTTATGCTAAGTTTCTAACT+AGG + chr1_2:694602-694621 None:intergenic 30.0%
TCATGCGTTCATTAATATCA+AGG + chr1_2:694781-694800 None:intergenic 30.0%
GTCATTAGATAATAGCATCA+AGG + chr1_2:694841-694860 None:intergenic 30.0%
TAATGACAAAAGAAAACTGC+AGG - chr1_2:694854-694873 Msa0048410:intron 30.0%
TTCTGCTCGATTAGAATTAA+AGG - chr1_2:694956-694975 Msa0048410:intron 30.0%
CTTCGGTAAACAAATCATAT+TGG - chr1_2:694995-695014 Msa0048410:intron 30.0%
CAAACTTAGCATAGCTTAAA+GGG + chr1_2:695066-695085 None:intergenic 30.0%
ACAAACTTAGCATAGCTTAA+AGG + chr1_2:695067-695086 None:intergenic 30.0%
CCAAAATCATAATTCAGCAA+TGG + chr1_2:695097-695116 None:intergenic 30.0%
! CCATTGCTGAATTATGATTT+TGG - chr1_2:695094-695113 Msa0048410:intron 30.0%
!! AAACTTGTTAACAGTTGGAA+GGG + chr1_2:695299-695318 None:intergenic 30.0%
! TCTTGTTCTTCATTTTCAGA+AGG + chr1_2:695401-695420 None:intergenic 30.0%
GGTAGTTTAACTAACACCAA+TGG - chr1_2:688280-688299 Msa0048410:three_prime_UTR 35.0%
GAAGAGTTTGAGAACAAACA+TGG + chr1_2:688356-688375 None:intergenic 35.0%
TTCACCAACAATAGATTCCT+AGG - chr1_2:688383-688402 Msa0048410:three_prime_UTR 35.0%
AACAATAGATTCCTAGGCTT+GGG - chr1_2:688389-688408 Msa0048410:three_prime_UTR 35.0%
AGTATCAAAGGAAAGGAAGA+AGG - chr1_2:688423-688442 Msa0048410:three_prime_UTR 35.0%
GAAGGTGAATGAAAATGACT+TGG + chr1_2:688492-688511 None:intergenic 35.0%
!! AGTCATTTTCATTCACCTTC+GGG - chr1_2:688492-688511 Msa0048410:three_prime_UTR 35.0%
GTTATGTTAGGACAGAACTT+AGG - chr1_2:688837-688856 Msa0048410:intron 35.0%
CACAATTAGAGAGAAAGTTC+GGG - chr1_2:689043-689062 Msa0048410:intron 35.0%
AAGGATTGTAATGTGGGAAT+TGG + chr1_2:689565-689584 None:intergenic 35.0%
AGATTCTAGCCCATTTAACA+TGG + chr1_2:689603-689622 None:intergenic 35.0%
!! GTTTCTCAAGACTTGTTGTT+GGG - chr1_2:689759-689778 Msa0048410:intron 35.0%
GCAATACAGCTAACAAATCA+TGG + chr1_2:689956-689975 None:intergenic 35.0%
ATAAGTTGTTTGCGCAAGTA+GGG + chr1_2:690097-690116 None:intergenic 35.0%
AATAAGTTGTTTGCGCAAGT+AGG + chr1_2:690098-690117 None:intergenic 35.0%
AAGCTCAAATAACTCAATCC+AGG - chr1_2:690317-690336 Msa0048410:three_prime_UTR 35.0%
ATCTATCAAAATTGTCGTGG+AGG - chr1_2:690493-690512 Msa0048410:intron 35.0%
TCTATCAAAATTGTCGTGGA+GGG - chr1_2:690494-690513 Msa0048410:intron 35.0%
TAATGCAGAATGAAGCCTTT+CGG + chr1_2:690577-690596 None:intergenic 35.0%
AAGGCTTCATTCTGCATTAA+TGG - chr1_2:690578-690597 Msa0048410:intron 35.0%
AAGAAAGGGGTTCATAATTG+AGG + chr1_2:690757-690776 None:intergenic 35.0%
! TTTCATCTCGCTTCTGAAAA+CGG + chr1_2:690823-690842 None:intergenic 35.0%
! TTTTCAGAAGCGAGATGAAA+AGG - chr1_2:690823-690842 Msa0048410:intron 35.0%
ATGATCGGAGCTTAAATGTA+TGG - chr1_2:690895-690914 Msa0048410:three_prime_UTR 35.0%
AAGAATGTCTGCTATGATTC+TGG - chr1_2:690936-690955 Msa0048410:three_prime_UTR 35.0%
TTAGCAAATAGTGTAGGACA+GGG + chr1_2:690984-691003 None:intergenic 35.0%
ATTAGCAAATAGTGTAGGAC+AGG + chr1_2:690985-691004 None:intergenic 35.0%
! GTCCTACACTATTTGCTAAT+TGG - chr1_2:690985-691004 Msa0048410:intron 35.0%
CACCAATTAGCAAATAGTGT+AGG + chr1_2:690990-691009 None:intergenic 35.0%
GGAGTCTGAAGAATTAGAAA+CGG - chr1_2:691043-691062 Msa0048410:intron 35.0%
CTAACGTGGTTACTAGATAA+AGG - chr1_2:691101-691120 Msa0048410:three_prime_UTR 35.0%
GAAATTGTCTCTTACAGTCT+CGG + chr1_2:691153-691172 None:intergenic 35.0%
AGATGAAATAGCATCGTTCA+CGG + chr1_2:691186-691205 None:intergenic 35.0%
ATGTTACAGATAGCAGCAAA+AGG - chr1_2:691285-691304 Msa0048410:intron 35.0%
! TCCTTGCTATGAAGATAGAT+AGG + chr1_2:691311-691330 None:intergenic 35.0%
ATCTATCTTCATAGCAAGGA+AGG - chr1_2:691311-691330 Msa0048410:intron 35.0%
ATGTGATAACATGTTAGAGG+GGG + chr1_2:691423-691442 None:intergenic 35.0%
!! AGTAATATCCTTTTTGAGGG+AGG + chr1_2:691498-691517 None:intergenic 35.0%
!! TTTTTGGAAAAGATATCCGG+AGG + chr1_2:691703-691722 None:intergenic 35.0%
!!! AAATGTGGACATCGCTTTTT+TGG + chr1_2:691719-691738 None:intergenic 35.0%
! AAAAGCGATGTCCACATTTT+TGG - chr1_2:691720-691739 Msa0048410:three_prime_UTR 35.0%
! AAAGCGATGTCCACATTTTT+GGG - chr1_2:691721-691740 Msa0048410:three_prime_UTR 35.0%
TGATAATTGACATAATCGGG+AGG + chr1_2:691763-691782 None:intergenic 35.0%
ATAGCCATGTCCTTAAATTG+CGG + chr1_2:691808-691827 None:intergenic 35.0%
CAATTTAAGGACATGGCTAT+TGG - chr1_2:691808-691827 Msa0048410:three_prime_UTR 35.0%
TGTTTCCAATGGTACTATTG+TGG - chr1_2:691852-691871 Msa0048410:three_prime_UTR 35.0%
GTTTCCAATGGTACTATTGT+GGG - chr1_2:691853-691872 Msa0048410:three_prime_UTR 35.0%
GCTGATCCATTTAAACTATC+AGG + chr1_2:691880-691899 None:intergenic 35.0%
ATTGTCATCGACCGTAATTT+CGG + chr1_2:691929-691948 None:intergenic 35.0%
GACAATCAAAAGTCTGTGAA+TGG - chr1_2:691943-691962 Msa0048410:exon 35.0%
TCTAGTAGGACAACAGTAAA+CGG - chr1_2:691979-691998 Msa0048410:CDS 35.0%
TCAAGGGGAATTACATTACA+TGG - chr1_2:692008-692027 Msa0048410:CDS 35.0%
AAATCTCCAAGGCTTGAAAA+TGG - chr1_2:692081-692100 Msa0048410:CDS 35.0%
AAAGAAAGCTGAGATGTTCT+TGG - chr1_2:692203-692222 Msa0048410:CDS 35.0%
TTGTACTAGAGAAAAGGTCA+CGG - chr1_2:692245-692264 Msa0048410:CDS 35.0%
! GTGCTGTTGTTAAAAAAGCT+TGG - chr1_2:692339-692358 Msa0048410:CDS 35.0%
GCTGTTGTTAAAAAAGCTTG+GGG - chr1_2:692341-692360 Msa0048410:CDS 35.0%
!! TTCATTTCTCTTGGTGATGA+AGG + chr1_2:692664-692683 None:intergenic 35.0%
! GACCTTTTAGTCATGATACA+AGG - chr1_2:692747-692766 Msa0048410:CDS 35.0%
CCACAAAATCTACTTTCTCA+TGG + chr1_2:692865-692884 None:intergenic 35.0%
! CCATGAGAAAGTAGATTTTG+TGG - chr1_2:692862-692881 Msa0048410:CDS 35.0%
AGGTTAAATGACACAATAGG+GGG + chr1_2:692946-692965 None:intergenic 35.0%
CCAAGGTTAAATGACACAAT+AGG + chr1_2:692949-692968 None:intergenic 35.0%
!! CCTATTGTGTCATTTAACCT+TGG - chr1_2:692946-692965 Msa0048410:CDS 35.0%
ATGAGAAGTCAGAAAACCAA+GGG + chr1_2:692974-692993 None:intergenic 35.0%
TATGAGAAGTCAGAAAACCA+AGG + chr1_2:692975-692994 None:intergenic 35.0%
CAACAAATTTGTAACAGAGG+TGG - chr1_2:693226-693245 Msa0048410:CDS 35.0%
GACTTAAGACAAGTCATTCA+CGG - chr1_2:693472-693491 Msa0048410:intron 35.0%
ATGGTGTCTACATTACTCTA+AGG - chr1_2:693509-693528 Msa0048410:intron 35.0%
GTAAAGGTAAAGCAATTCCA+GGG - chr1_2:693557-693576 Msa0048410:intron 35.0%
AGGATATCAAATACTTTCCC+TGG + chr1_2:693577-693596 None:intergenic 35.0%
ATTTGATATCCTCAATGAGG+TGG - chr1_2:693585-693604 Msa0048410:intron 35.0%
TGACACTCACTTTGGTTATA+AGG + chr1_2:693669-693688 None:intergenic 35.0%
ACATAAAGTGACACTCACTT+TGG + chr1_2:693677-693696 None:intergenic 35.0%
TGCACCTTGTATCAAAAACA+AGG - chr1_2:694178-694197 Msa0048410:intron 35.0%
GCACCTTGTATCAAAAACAA+GGG - chr1_2:694179-694198 Msa0048410:intron 35.0%
TAGATGTTTATGGGCATATG+TGG + chr1_2:694401-694420 None:intergenic 35.0%
CAAACAAACTAGAGTAGACT+AGG - chr1_2:694529-694548 Msa0048410:intron 35.0%
!! GCATTGATTCAAATGCATGT+AGG + chr1_2:694569-694588 None:intergenic 35.0%
GCGTTCATTAATATCAAGGA+AGG + chr1_2:694777-694796 None:intergenic 35.0%
ATAGGGGTAAACAATATGCA+CGG + chr1_2:694894-694913 None:intergenic 35.0%
AATTCTAATCGAGCAGAATC+TGG + chr1_2:694954-694973 None:intergenic 35.0%
GCTTAAAGGGAAACATATTC+TGG + chr1_2:695053-695072 None:intergenic 35.0%
AAGCTATGCTAAGTTTGTCT+TGG - chr1_2:695069-695088 Msa0048410:intron 35.0%
!! AACTTGTTAACAGTTGGAAG+GGG + chr1_2:695298-695317 None:intergenic 35.0%
!! CAAACTTGTTAACAGTTGGA+AGG + chr1_2:695300-695319 None:intergenic 35.0%
!! TGGTCAAACTTGTTAACAGT+TGG + chr1_2:695304-695323 None:intergenic 35.0%
GTTAACAAGTTTGACCAAAC+AGG - chr1_2:695307-695326 Msa0048410:intron 35.0%
TTGGCTTCCATTGTAAAGAT+AGG - chr1_2:695482-695501 Msa0048410:CDS 35.0%
TGGCTTCCATTGTAAAGATA+GGG - chr1_2:695483-695502 Msa0048410:CDS 35.0%
ATGTCGATACATGCTACCAT+TGG + chr1_2:688299-688318 None:intergenic 40.0%
! AATGGTAGCATGTATCGACA+TGG - chr1_2:688298-688317 Msa0048410:three_prime_UTR 40.0%
CAAGCCTAGGAATCTATTGT+TGG + chr1_2:688390-688409 None:intergenic 40.0%
CAACAATAGATTCCTAGGCT+TGG - chr1_2:688388-688407 Msa0048410:three_prime_UTR 40.0%
!! GGCTTTGAGTATCAAAGGAA+AGG - chr1_2:688416-688435 Msa0048410:three_prime_UTR 40.0%
GGAAAGGAAGAAGGATACTA+AGG - chr1_2:688432-688451 Msa0048410:three_prime_UTR 40.0%
CGAGAATCAAGTAAGCGTAA+CGG - chr1_2:688962-688981 Msa0048410:intron 40.0%
AGATGATAGAAACCAGGCTT+AGG - chr1_2:689084-689103 Msa0048410:intron 40.0%
ATTATCCCACTAAGTGGTGT+TGG + chr1_2:689277-689296 None:intergenic 40.0%
CGGGTTAAGGATTGTAATGT+GGG + chr1_2:689571-689590 None:intergenic 40.0%
TCGGGTTAAGGATTGTAATG+TGG + chr1_2:689572-689591 None:intergenic 40.0%
ATGGTATTAGAGTCGGGTTA+AGG + chr1_2:689584-689603 None:intergenic 40.0%
!! GGTTTCTCAAGACTTGTTGT+TGG - chr1_2:689758-689777 Msa0048410:intron 40.0%
GGGTAACTCTCATTGTAGTA+TGG - chr1_2:689779-689798 Msa0048410:intron 40.0%
! GTTTTCTTCTCTGCGCATTT+TGG - chr1_2:689837-689856 Msa0048410:intron 40.0%
AAGCGCTTGTGACACTAATT+GGG + chr1_2:690285-690304 None:intergenic 40.0%
TAAGCGCTTGTGACACTAAT+TGG + chr1_2:690286-690305 None:intergenic 40.0%
TGATAGATCATGGGATTGGA+AGG + chr1_2:690481-690500 None:intergenic 40.0%
CTATCAAAATTGTCGTGGAG+GGG - chr1_2:690495-690514 Msa0048410:intron 40.0%
! GGATCTTTAGAAACTCCGAA+AGG - chr1_2:690559-690578 Msa0048410:intron 40.0%
! CATTATGCAATCCGTTGACT+GGG - chr1_2:690604-690623 Msa0048410:intron 40.0%
! ATTATGCAATCCGTTGACTG+GGG - chr1_2:690605-690624 Msa0048410:intron 40.0%
AGTTTCTGTTCTTGGATGCA+TGG - chr1_2:690686-690705 Msa0048410:intron 40.0%
TAATCTCTGCGTCAAGAAAG+GGG + chr1_2:690770-690789 None:intergenic 40.0%
CTAATCTCTGCGTCAAGAAA+GGG + chr1_2:690771-690790 None:intergenic 40.0%
AAGGGCAACATGTAAACTCT+CGG + chr1_2:690853-690872 None:intergenic 40.0%
TTTAAGCTCCGATCATCATC+AGG + chr1_2:690891-690910 None:intergenic 40.0%
ATCGGAGCTTAAATGTATGG+AGG - chr1_2:690898-690917 Msa0048410:three_prime_UTR 40.0%
!!! TATGATTCTGGTTTTCCTCG+TGG - chr1_2:690948-690967 Msa0048410:three_prime_UTR 40.0%
! TTAGAAACGGCTTTTTGGAC+TGG - chr1_2:691056-691075 Msa0048410:intron 40.0%
TAACAGAAGAAGGACTAACG+TGG - chr1_2:691087-691106 Msa0048410:three_prime_UTR 40.0%
!! GTGAACGATGCTATTTCATC+TGG - chr1_2:691185-691204 Msa0048410:intron 40.0%
GTGCAGTCATAACTTCAACT+GGG + chr1_2:691232-691251 None:intergenic 40.0%
AGTTATGACTGCACCAACAA+TGG - chr1_2:691238-691257 Msa0048410:intron 40.0%
GCCTATCTATCTTCATAGCA+AGG - chr1_2:691307-691326 Msa0048410:intron 40.0%
TTCATAGCAAGGAAGGAGTT+TGG - chr1_2:691318-691337 Msa0048410:intron 40.0%
AGTTTGGAGATCATCTGCTA+TGG - chr1_2:691334-691353 Msa0048410:intron 40.0%
AACATGTTAGAGGGGGTAAT+TGG + chr1_2:691416-691435 None:intergenic 40.0%
! AAATAGCTCTGCAAAACTGC+AGG - chr1_2:691448-691467 Msa0048410:intron 40.0%
AGAAAGATCCTCCCTCAAAA+AGG - chr1_2:691487-691506 Msa0048410:three_prime_UTR 40.0%
GATGCAACATGCAGTTCTAT+TGG - chr1_2:691536-691555 Msa0048410:three_prime_UTR 40.0%
! CTTTTCAGAGACACTTCTGT+CGG + chr1_2:691567-691586 None:intergenic 40.0%
CAAGGTAATGCAGCCTTAAA+TGG - chr1_2:691605-691624 Msa0048410:three_prime_UTR 40.0%
GGAATTTCTCCTGATAAGGA+AGG - chr1_2:691626-691645 Msa0048410:three_prime_UTR 40.0%
GGAAAAGATCCTTCCTTATC+AGG + chr1_2:691638-691657 None:intergenic 40.0%
! GGAGGAACTGAGCTTTTAAA+GGG + chr1_2:691682-691701 None:intergenic 40.0%
! AGGAGGAACTGAGCTTTTAA+AGG + chr1_2:691683-691702 None:intergenic 40.0%
CTTACCGCAATTTAAGGACA+TGG - chr1_2:691801-691820 Msa0048410:three_prime_UTR 40.0%
GTGGGTCCTGATAGTTTAAA+TGG - chr1_2:691871-691890 Msa0048410:three_prime_UTR 40.0%
TTGTCATCGACCGTAATTTC+GGG + chr1_2:691928-691947 None:intergenic 40.0%
!! GGAATGCTTCTAGTTCTAGT+AGG - chr1_2:691965-691984 Msa0048410:CDS 40.0%
ACAGTAAACGGATCAAGTCA+AGG - chr1_2:691991-692010 Msa0048410:CDS 40.0%
CAGTAAACGGATCAAGTCAA+GGG - chr1_2:691992-692011 Msa0048410:CDS 40.0%
AGTAAACGGATCAAGTCAAG+GGG - chr1_2:691993-692012 Msa0048410:CDS 40.0%
!! ACTGTTCCATTTTCAAGCCT+TGG + chr1_2:692090-692109 None:intergenic 40.0%
GCTTGAAAATGGAACAGTCA+AGG - chr1_2:692092-692111 Msa0048410:CDS 40.0%
AAGCTGAGATGTTCTTGGTT+CGG - chr1_2:692208-692227 Msa0048410:CDS 40.0%
AAAGGTCACGGAATCTTCTT+TGG - chr1_2:692257-692276 Msa0048410:CDS 40.0%
GAATCCAAAACCTGGAATTC+TGG + chr1_2:692722-692741 None:intergenic 40.0%
! AGTAGATTTTGTGGCATGCT+TGG - chr1_2:692871-692890 Msa0048410:CDS 40.0%
! GTAGATTTTGTGGCATGCTT+GGG - chr1_2:692872-692891 Msa0048410:CDS 40.0%
! TAGATTTTGTGGCATGCTTG+GGG - chr1_2:692873-692892 Msa0048410:CDS 40.0%
TCATTTAACCTTGGTTCCCT+TGG - chr1_2:692955-692974 Msa0048410:CDS 40.0%
!! CAGAGGTGGACTAAAAATGA+AGG - chr1_2:693240-693259 Msa0048410:CDS 40.0%
!! GGTGGACTAAAAATGAAGGT+TGG - chr1_2:693244-693263 Msa0048410:CDS 40.0%
TAGTCGTCAAACTACATACG+CGG + chr1_2:693445-693464 None:intergenic 40.0%
GTATGTAGTTTGACGACTAC+AGG - chr1_2:693446-693465 Msa0048410:intron 40.0%
CGTAAAGGTAAAGCAATTCC+AGG - chr1_2:693556-693575 Msa0048410:intron 40.0%
TCAATGAGGTGGTTGTTGAT+CGG - chr1_2:693596-693615 Msa0048410:intron 40.0%
GACAGATGTTCATGTCTTTC+AGG - chr1_2:693814-693833 Msa0048410:intron 40.0%
! GTTCATGTCTTTCAGGTACA+AGG - chr1_2:693821-693840 Msa0048410:intron 40.0%
AGTCATTGTTGGAACTCCTA+CGG - chr1_2:693850-693869 Msa0048410:intron 40.0%
!! GGGAAGTACTGCATATTCTA+CGG - chr1_2:693871-693890 Msa0048410:intron 40.0%
AAACTCCTACAAGCTTACCA+TGG + chr1_2:693909-693928 None:intergenic 40.0%
TATTTCAAGGCATGGATACC+AGG + chr1_2:693965-693984 None:intergenic 40.0%
! TGTTTGGGATGACATGGAAT+TGG + chr1_2:694287-694306 None:intergenic 40.0%
TAGTCGTCAAATTGATGTGC+TGG + chr1_2:694323-694342 None:intergenic 40.0%
AACTAGAGTAGACTAGGGTT+TGG - chr1_2:694535-694554 Msa0048410:intron 40.0%
!! CTGGTATTGATGCAAATGAC+TGG - chr1_2:694631-694650 Msa0048410:intron 40.0%
AACAATATGCACGGAACGTT+TGG + chr1_2:694885-694904 None:intergenic 40.0%
ACAGTGAATGTGGACAGATA+GGG + chr1_2:694911-694930 None:intergenic 40.0%
GGTCTAAATGACAGTGAATG+TGG + chr1_2:694921-694940 None:intergenic 40.0%
GATGCTCACTCATATGTATC+CGG + chr1_2:695276-695295 None:intergenic 40.0%
AGTTTGACCAAACAGGTGAT+TGG - chr1_2:695314-695333 Msa0048410:intron 40.0%
GGCAAACCCTATCTTTACAA+TGG + chr1_2:695492-695511 None:intergenic 40.0%
GTAAAGATAGGGTTTGCCAA+TGG - chr1_2:695494-695513 Msa0048410:CDS 40.0%
!! GCTTGGGCTTTGAGTATCAA+AGG - chr1_2:688411-688430 Msa0048410:three_prime_UTR 45.0%
CGCTTACTTGATTCTCGTGT+TGG + chr1_2:688959-688978 None:intergenic 45.0%
! AAGTAAGCGTAACGGAGATG+AGG - chr1_2:688970-688989 Msa0048410:intron 45.0%
TGATAGAAACCAGGCTTAGG+TGG - chr1_2:689087-689106 Msa0048410:intron 45.0%
AGTACGAAGAGCAGATCAGA+TGG - chr1_2:689144-689163 Msa0048410:intron 45.0%
GTCAGACCAAAAGAGGTAGA+TGG - chr1_2:689173-689192 Msa0048410:intron 45.0%
ATGTAGCCAACACCACTTAG+TGG - chr1_2:689268-689287 Msa0048410:intron 45.0%
TGTAGCCAACACCACTTAGT+GGG - chr1_2:689269-689288 Msa0048410:intron 45.0%
CCAAGCATTATCCCACTAAG+TGG + chr1_2:689283-689302 None:intergenic 45.0%
CCACTTAGTGGGATAATGCT+TGG - chr1_2:689280-689299 Msa0048410:intron 45.0%
ACCCATACTCACATCTATCC+TGG - chr1_2:689362-689381 Msa0048410:intron 45.0%
CCCAGGATAGATGTGAGTAT+GGG + chr1_2:689366-689385 None:intergenic 45.0%
CCCATACTCACATCTATCCT+GGG - chr1_2:689363-689382 Msa0048410:intron 45.0%
TCCCAGGATAGATGTGAGTA+TGG + chr1_2:689367-689386 None:intergenic 45.0%
AACTCGGGAACTGAACAATG+TGG - chr1_2:689477-689496 Msa0048410:intron 45.0%
ACTCGGGAACTGAACAATGT+GGG - chr1_2:689478-689497 Msa0048410:intron 45.0%
ACCAAAAAACCTGGGAACCT+GGG - chr1_2:689672-689691 Msa0048410:intron 45.0%
ATTGAAGTCTCACATTGCCC+AGG + chr1_2:689692-689711 None:intergenic 45.0%
CGGAAATTCATTTAAGGGCC+TGG + chr1_2:690338-690357 None:intergenic 45.0%
TCGACTTCAGCAATATCACC+CGG + chr1_2:690528-690547 None:intergenic 45.0%
CTGAAGTCGAGGCATATTGT+AGG - chr1_2:690538-690557 Msa0048410:intron 45.0%
GCATTATGCAATCCGTTGAC+TGG - chr1_2:690603-690622 Msa0048410:intron 45.0%
ATGGTATCCCTCGTGAACAA+AGG - chr1_2:690705-690724 Msa0048410:intron 45.0%
GCTAATCTCTGCGTCAAGAA+AGG + chr1_2:690772-690791 None:intergenic 45.0%
! TTCTGAAAACGGCAAGTGGA+GGG + chr1_2:690812-690831 None:intergenic 45.0%
GGTGCAGTCATAACTTCAAC+TGG + chr1_2:691233-691252 None:intergenic 45.0%
CATCTGCTATGGTGTCTAGA+TGG - chr1_2:691345-691364 Msa0048410:intron 45.0%
ATGTTAGAGGGGGTAATTGG+TGG + chr1_2:691413-691432 None:intergenic 45.0%
TAAAAGCTCAGTTCCTCCTC+CGG - chr1_2:691684-691703 Msa0048410:three_prime_UTR 45.0%
TTGGAAAAGATATCCGGAGG+AGG + chr1_2:691700-691719 None:intergenic 45.0%
!!! TGTCCACATTTTTGGGTAGC+AGG - chr1_2:691728-691747 Msa0048410:three_prime_UTR 45.0%
CTTCCTGCTACCCAAAAATG+TGG + chr1_2:691734-691753 None:intergenic 45.0%
ATGGCTATTGGAAGACGTGA+AGG - chr1_2:691820-691839 Msa0048410:three_prime_UTR 45.0%
! GGAGATGTGGTTGTTTCCAA+TGG - chr1_2:691841-691860 Msa0048410:three_prime_UTR 45.0%
AGGACCCACAATAGTACCAT+TGG + chr1_2:691860-691879 None:intergenic 45.0%
GCTCATGTTGATCATCCATC+TGG - chr1_2:691898-691917 Msa0048410:three_prime_UTR 45.0%
ATCTGGAGAGCCCGAAATTA+CGG - chr1_2:691915-691934 Msa0048410:three_prime_UTR 45.0%
GAAAATGGAACAGTCAAGGC+CGG - chr1_2:692096-692115 Msa0048410:CDS 45.0%
AAAATGGAACAGTCAAGGCC+GGG - chr1_2:692097-692116 Msa0048410:CDS 45.0%
TTCATCGCGTAAAGCTAACC+CGG + chr1_2:692118-692137 None:intergenic 45.0%
AGCTTTACGCGATGAAGAGT+TGG - chr1_2:692122-692141 Msa0048410:CDS 45.0%
GCTTTACGCGATGAAGAGTT+GGG - chr1_2:692123-692142 Msa0048410:CDS 45.0%
!! ATGTTCTTGGTTCGGACAGA+TGG - chr1_2:692216-692235 Msa0048410:CDS 45.0%
CTCAGCAACAGATGCTTATG+TGG - chr1_2:692298-692317 Msa0048410:CDS 45.0%
AAAGCTTGGGGACGAACTAT+TGG - chr1_2:692353-692372 Msa0048410:CDS 45.0%
GCAAGTACATCATGCACATC+AGG + chr1_2:692700-692719 None:intergenic 45.0%
GATGTACTTGCCAGAATTCC+AGG - chr1_2:692709-692728 Msa0048410:CDS 45.0%
! CTTGCCAGAATTCCAGGTTT+TGG - chr1_2:692715-692734 Msa0048410:CDS 45.0%
! AGATTTTGTGGCATGCTTGG+GGG - chr1_2:692874-692893 Msa0048410:CDS 45.0%
TCAGAAAACCAAGGGAACCA+AGG + chr1_2:692966-692985 None:intergenic 45.0%
CACGGAAATACTTCACGAGA+TGG - chr1_2:693490-693509 Msa0048410:intron 45.0%
GATCAACAACCACCTCATTG+AGG + chr1_2:693597-693616 None:intergenic 45.0%
CAATGAGGTGGTTGTTGATC+GGG - chr1_2:693597-693616 Msa0048410:intron 45.0%
AATGAGGTGGTTGTTGATCG+GGG - chr1_2:693598-693617 Msa0048410:intron 45.0%
! GTCTTTCAGGTACAAGGTGA+TGG - chr1_2:693827-693846 Msa0048410:intron 45.0%
!! CAAGGTGATGGAGTCATTGT+TGG - chr1_2:693839-693858 Msa0048410:intron 45.0%
GTCATTGTTGGAACTCCTAC+GGG - chr1_2:693851-693870 Msa0048410:intron 45.0%
GAATATGCAGTACTTCCCGT+AGG + chr1_2:693869-693888 None:intergenic 45.0%
AGGTTCCATGGTAAGCTTGT+AGG - chr1_2:693901-693920 Msa0048410:intron 45.0%
GGCGCTATGAATAAGACTCA+TGG - chr1_2:694058-694077 Msa0048410:intron 45.0%
AGACTCATGGTCAATCGTGA+AGG - chr1_2:694071-694090 Msa0048410:intron 45.0%
CTCAAAGACCTCTACTTAGC+TGG - chr1_2:694466-694485 Msa0048410:intron 45.0%
ATATGCACGGAACGTTTGGA+TGG + chr1_2:694881-694900 None:intergenic 45.0%
CAGTGAATGTGGACAGATAG+GGG + chr1_2:694910-694929 None:intergenic 45.0%
GACAGTGAATGTGGACAGAT+AGG + chr1_2:694912-694931 None:intergenic 45.0%
! GCAGAATCTGGAAGTATGAC+AGG + chr1_2:694942-694961 None:intergenic 45.0%
GCGTTACTTCTAGCATCTTC+TGG + chr1_2:695199-695218 None:intergenic 45.0%
AAGATGCTAGAAGTAACGCG+TGG - chr1_2:695200-695219 Msa0048410:intron 45.0%
AGATGCTAGAAGTAACGCGT+GGG - chr1_2:695201-695220 Msa0048410:intron 45.0%
AGAAGACAACAGCTCTCAAG+AGG - chr1_2:695241-695260 Msa0048410:intron 45.0%
! GCTTGATTCGCTGCCTAAAT+TGG - chr1_2:695344-695363 Msa0048410:CDS 45.0%
CAAGCCTCTCGTTCCAATTT+AGG + chr1_2:695360-695379 None:intergenic 45.0%
GAACGAGAGGCTTGATCAAA+AGG - chr1_2:695366-695385 Msa0048410:CDS 45.0%
!! AAAAAAAAAATTAAAAAATG+CGG + chr1_2:690358-690377 None:intergenic 5.0%
TAGATTCCTAGGCTTGGGCT+TGG - chr1_2:688394-688413 Msa0048410:three_prime_UTR 50.0%
AGATTCCTAGGCTTGGGCTT+GGG - chr1_2:688395-688414 Msa0048410:three_prime_UTR 50.0%
CGGAGATGAGGACATTGCAT+TGG - chr1_2:688982-689001 Msa0048410:intron 50.0%
CATGTCAAACCACCTAAGCC+TGG + chr1_2:689099-689118 None:intergenic 50.0%
ACGAAGAGCAGATCAGATGG+AGG - chr1_2:689147-689166 Msa0048410:intron 50.0%
GAGGAGAGTCAGACCAAAAG+AGG - chr1_2:689166-689185 Msa0048410:intron 50.0%
! AGGTCGCCATCTACCTCTTT+TGG + chr1_2:689182-689201 None:intergenic 50.0%
GTGTGAATTAGACTCGTCCC+AGG + chr1_2:689383-689402 None:intergenic 50.0%
CACCAAAAAACCTGGGAACC+TGG - chr1_2:689671-689690 Msa0048410:intron 50.0%
TCAGCAATATCACCCGGAAC+TGG + chr1_2:690522-690541 None:intergenic 50.0%
GGGTGATATTGCTGAAGTCG+AGG - chr1_2:690527-690546 Msa0048410:intron 50.0%
ACGCTACATTCCCCAGTCAA+CGG + chr1_2:690618-690637 None:intergenic 50.0%
GGAATGTAGCGTCTCGTATG+AGG - chr1_2:690626-690645 Msa0048410:intron 50.0%
TATCCCTCGTGAACAAAGGC+AGG - chr1_2:690709-690728 Msa0048410:intron 50.0%
ATCCCTCGTGAACAAAGGCA+GGG - chr1_2:690710-690729 Msa0048410:intron 50.0%
GGGACGATGTTCTTACTGGA+AGG - chr1_2:690730-690749 Msa0048410:intron 50.0%
CGCAGAGATTAGCGAGATTG+AGG - chr1_2:690779-690798 Msa0048410:intron 50.0%
! CTTCTGAAAACGGCAAGTGG+AGG + chr1_2:690813-690832 None:intergenic 50.0%
! TCGCTTCTGAAAACGGCAAG+TGG + chr1_2:690816-690835 None:intergenic 50.0%
!!! TTCTGGTTTTCCTCGTGGTG+AGG - chr1_2:690953-690972 Msa0048410:three_prime_UTR 50.0%
!!! TCTGGTTTTCCTCGTGGTGA+GGG - chr1_2:690954-690973 Msa0048410:three_prime_UTR 50.0%
!! GAAACGGCTTTTTGGACTGG+TGG - chr1_2:691059-691078 Msa0048410:intron 50.0%
GGTGGTCAGGTAACAGAAGA+AGG - chr1_2:691077-691096 Msa0048410:intron 50.0%
GACTGCACCAACAATGGAAC+AGG - chr1_2:691244-691263 Msa0048410:intron 50.0%
CTCGCAACCTGTTCCATTGT+TGG + chr1_2:691254-691273 None:intergenic 50.0%
CAACAATGGAACAGGTTGCG+AGG - chr1_2:691252-691271 Msa0048410:intron 50.0%
CTGCTATGGTGTCTAGATGG+AGG - chr1_2:691348-691367 Msa0048410:intron 50.0%
TGGAAGACGTGAAGGAGATG+TGG - chr1_2:691828-691847 Msa0048410:three_prime_UTR 50.0%
GTAATTTCGGGCTCTCCAGA+TGG + chr1_2:691916-691935 None:intergenic 50.0%
ATTCACAACGGCAGAGACGT+CGG + chr1_2:692040-692059 None:intergenic 50.0%
GAAGAGTTGGGATCCCTTGA+AGG - chr1_2:692135-692154 Msa0048410:CDS 50.0%
CGCACACATATCGCCTTCAA+GGG + chr1_2:692151-692170 None:intergenic 50.0%
ACGCACACATATCGCCTTCA+AGG + chr1_2:692152-692171 None:intergenic 50.0%
CGATATGTGTGCGTCGTCAA+CGG - chr1_2:692158-692177 Msa0048410:CDS 50.0%
GATATGTGTGCGTCGTCAAC+GGG - chr1_2:692159-692178 Msa0048410:CDS 50.0%
GTCGTCAACGGGAGTTGTAA+GGG - chr1_2:692170-692189 Msa0048410:CDS 50.0%
AGCATCTGTTGCTGAGTGCT+AGG + chr1_2:692294-692313 None:intergenic 50.0%
GTCTGCACGAATCCAAAACC+TGG + chr1_2:692730-692749 None:intergenic 50.0%
! GATTTTGTGGCATGCTTGGG+GGG - chr1_2:692875-692894 Msa0048410:CDS 50.0%
ACTGCATATTCTACGGCTGC+TGG - chr1_2:693878-693897 Msa0048410:intron 50.0%
! GTCACTTGGTGAGTGACAGT+GGG + chr1_2:694034-694053 None:intergenic 50.0%
! AGTCACTTGGTGAGTGACAG+TGG + chr1_2:694035-694054 None:intergenic 50.0%
TGTCACTCACCAAGTGACTG+CGG - chr1_2:694036-694055 Msa0048410:intron 50.0%
CTTGCACTCCAGCTAAGTAG+AGG + chr1_2:694477-694496 None:intergenic 50.0%
TCTCAAGAGGAGACTCAGTC+CGG - chr1_2:695254-695273 Msa0048410:intron 50.0%
TGCGGAACCAATCACCTGTT+TGG + chr1_2:695324-695343 None:intergenic 50.0%
TTAGGCAGCGAATCAAGCTG+CGG + chr1_2:695342-695361 None:intergenic 50.0%
GCTGCCTAAATTGGAACGAG+AGG - chr1_2:695353-695372 Msa0048410:CDS 50.0%
!!! GCCCAGGTTCCCAGGTTTTT+TGG + chr1_2:689676-689695 None:intergenic 55.0%
GTCCCTGCCTTTGTTCACGA+GGG + chr1_2:690715-690734 None:intergenic 55.0%
GGCAGGGACGATGTTCTTAC+TGG - chr1_2:690726-690745 Msa0048410:intron 55.0%
!!! GGCTTTTTGGACTGGTGGTC+AGG - chr1_2:691064-691083 Msa0048410:intron 55.0%
CGTCGTCAACGGGAGTTGTA+AGG - chr1_2:692169-692188 Msa0048410:CDS 55.0%
GCATATTCTACGGCTGCTGG+AGG - chr1_2:693881-693900 Msa0048410:intron 55.0%
! ACTTGGTGAGTGACAGTGGG+TGG + chr1_2:694031-694050 None:intergenic 55.0%
GTCACTCACCAAGTGACTGC+GGG - chr1_2:694037-694056 Msa0048410:intron 55.0%
CAAAGCCCAAGCCCAAGCCT+AGG + chr1_2:688403-688422 None:intergenic 60.0%
CACCTTCGGGCTTGACTCTC+CGG - chr1_2:688505-688524 Msa0048410:three_prime_UTR 60.0%
TACCGGAGAGTCAAGCCCGA+AGG + chr1_2:688510-688529 None:intergenic 60.0%
ATCCACCCTCACGCCTAGCA+CGG - chr1_2:689530-689549 Msa0048410:intron 60.0%
TTGGACACATGCCCCGTGCT+AGG + chr1_2:689546-689565 None:intergenic 60.0%
CTCACATTGCCCAGGTTCCC+AGG + chr1_2:689684-689703 None:intergenic 60.0%
CGTCCCTGCCTTTGTTCACG+AGG + chr1_2:690716-690735 None:intergenic 60.0%
CAGGGATAACCCTCACCACG+AGG + chr1_2:690966-690985 None:intergenic 60.0%
TACGGCTGCTGGAGGTTCCA+TGG - chr1_2:693889-693908 Msa0048410:intron 60.0%
TCATAGCGCCCGCAGTCACT+TGG + chr1_2:694048-694067 None:intergenic 60.0%
AACGCGTGGGTCTCGTTCGA+TGG - chr1_2:695214-695233 Msa0048410:intron 60.0%
TCCACCCTCACGCCTAGCAC+GGG - chr1_2:689531-689550 Msa0048410:intron 65.0%
ATGCCCCGTGCTAGGCGTGA+GGG + chr1_2:689538-689557 None:intergenic 65.0%
GTCGTGGAGGGGACCAGTTC+CGG - chr1_2:690506-690525 Msa0048410:intron 65.0%
TCGTGGAGGGGACCAGTTCC+GGG - chr1_2:690507-690526 Msa0048410:intron 65.0%
GTGGCATGCTTGGGGGGAGA+CGG - chr1_2:692881-692900 Msa0048410:CDS 65.0%
CCACCCTCACGCCTAGCACG+GGG - chr1_2:689532-689551 Msa0048410:intron 70.0%
CATGCCCCGTGCTAGGCGTG+AGG + chr1_2:689539-689558 None:intergenic 70.0%
CCCCGTGCTAGGCGTGAGGG+TGG + chr1_2:689535-689554 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_2 gene 688125 695721 688125 ID=Msa0048410;Name=Msa0048410
chr1_2 mRNA 688125 695721 688125 ID=Msa0048410-mRNA-1;Parent=Msa0048410;Name=Msa0048410-mRNA-1;_AED=0.05;_eAED=0.05;_QI=154|1|1|1|0.62|0.44|9|1691|549
chr1_2 exon 688125 688653 688125 ID=Msa0048410-mRNA-1:exon:134;Parent=Msa0048410-mRNA-1
chr1_2 exon 688869 688970 688869 ID=Msa0048410-mRNA-1:exon:133;Parent=Msa0048410-mRNA-1
chr1_2 exon 689936 690010 689936 ID=Msa0048410-mRNA-1:exon:132;Parent=Msa0048410-mRNA-1
chr1_2 exon 690168 690392 690168 ID=Msa0048410-mRNA-1:exon:131;Parent=Msa0048410-mRNA-1
chr1_2 exon 690850 690990 690850 ID=Msa0048410-mRNA-1:exon:130;Parent=Msa0048410-mRNA-1
chr1_2 exon 691078 691196 691078 ID=Msa0048410-mRNA-1:exon:129;Parent=Msa0048410-mRNA-1
chr1_2 exon 691457 693378 691457 ID=Msa0048410-mRNA-1:exon:128;Parent=Msa0048410-mRNA-1
chr1_2 exon 695320 695565 695320 ID=Msa0048410-mRNA-1:exon:127;Parent=Msa0048410-mRNA-1
chr1_2 exon 695586 695721 695586 ID=Msa0048410-mRNA-1:exon:126;Parent=Msa0048410-mRNA-1
chr1_2 five_prime_UTR 695586 695721 695586 ID=Msa0048410-mRNA-1:five_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 five_prime_UTR 695548 695565 695548 ID=Msa0048410-mRNA-1:five_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 CDS 695320 695547 695320 ID=Msa0048410-mRNA-1:cds;Parent=Msa0048410-mRNA-1
chr1_2 CDS 691957 693378 691957 ID=Msa0048410-mRNA-1:cds;Parent=Msa0048410-mRNA-1
chr1_2 three_prime_UTR 691457 691956 691457 ID=Msa0048410-mRNA-1:three_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 three_prime_UTR 691078 691196 691078 ID=Msa0048410-mRNA-1:three_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 three_prime_UTR 690850 690990 690850 ID=Msa0048410-mRNA-1:three_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 three_prime_UTR 690168 690392 690168 ID=Msa0048410-mRNA-1:three_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 three_prime_UTR 689936 690010 689936 ID=Msa0048410-mRNA-1:three_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 three_prime_UTR 688869 688970 688869 ID=Msa0048410-mRNA-1:three_prime_utr;Parent=Msa0048410-mRNA-1
chr1_2 three_prime_UTR 688125 688653 688125 ID=Msa0048410-mRNA-1:three_prime_utr;Parent=Msa0048410-mRNA-1
Gene Sequence

>Msa0048410

ATGGTAGCATGTATCGACATGGCATTCTCCGTAGTTCATTCAACTTCTTCTTATCCATGTTTGTTCTCAAACTCTTCTCCATTCTTCACCAACAATAGATTCCTAGGCTTGGGCTTGGGCTTTGAGTATCAAAGGAAAGGAAGAAGGATACTAAGGAGACATGTCAAGTTTGTTATCAGTGCACAGCTTTCCAAGTCATTTTCATTCACCTTCGGGCTTGACTCTCCGAATTTGAATTCCTTCCAATCCCATGATCTATCAAAATTGTCGTGGAGGGGACCAGTTCCGGGTGATATTGCTGAAGTCGAGGCATATTGTAGGATCTTTAGAAACTCCGAAAGGCTTCATTCTGCATTAATGGATGCATTATGCAATCCGTTGACTGGGGAATGTAGCGTCTCGTATGAGGTTTCATCAGATGAGAAACCTCAACTTGAAGATAAAATAGTTTCTGTTCTTGGATGCATGGTATCCCTCGTGAACAAAGGCAGGGACGATGTTCTTACTGGAAGGTCCTCAATTATGAACCCCTTTCTTGACGCAGAGATTAGCGAGATTGAGGATAAGCTCCCTCCACTTGCCGTTTTCAGAAGCGAGATGAAAAGGTGTTCCGAGAGTTTACATGTTGCCCTTCAGAATTATTTAATGCCTGATGATGATCGGAGCTTAAATGTATGGAGGAAACTTCAGAAACTGAAGAATGTCTGCTATGATTCTGGTTTTCCTCGTGGTGAGGGTTATCCCTGTCCTACACTATTTGCTAATTGGTGTCCTGTATATTTTTCTTCTTCTAAAGAAGACACGGAGTCTGAAGAATTAGAAACGGCTTTTTGGACTGGTGGTCAGGTAACAGAAGAAGGACTAACGTGGTTACTAGATAAAGGATATAAAACAATTATAGATATCAGAGCCGAGACTGTAAGAGACAATTTCTATCAAGCGGCCGTGAACGATGCTATTTCATCTGGCAAAATTAATTTAGTAAAAATCCCAGTTGAAGTTATGACTGCACCAACAATGGAACAGGTTGCGAGGTTTGCATCTTATGTTACAGATAGCAGCAAAAGGCCTATCTATCTTCATAGCAAGGAAGGAGTTTGGAGATCATCTGCTATGGTGTCTAGATGGAGGCAGTATATGACTCGCTCTTCGTCACAGAATGTTTCTAGTCCACCAATTACCCCCTCTAACATGTTATCACATTCTACAAATAGCTCTGCAAAACTGCAGGATTCTTCAGCGACTGCAGAAAGATCCTCCCTCAAAAAGGATATTACTTCTGTGCAAGACAATTTCGATGCAACATGCAGTTCTATTGGAACATCCGACAGAAGTGTCTCTGAAAAGAAGTATGATGAGAAAACACAAGGTAATGCAGCCTTAAATGGAATTTCTCCTGATAAGGAAGGATCTTTTCCAAGTTTTTCCAGCAAGATTAACCCTTTAAAAGCTCAGTTCCTCCTCCGGATATCTTTTCCAAAAAAGCGATGTCCACATTTTTGGGTAGCAGGAAGATCTCACCTCCCGATTATGTCAATTATCAAATCAAAAGGGCGAAATTCTTACCGCAATTTAAGGACATGGCTATTGGAAGACGTGAAGGAGATGTGGTTGTTTCCAATGGTACTATTGTGGGTCCTGATAGTTTAA
Protein sequence

>Msa0048410

MVACIDMAFSVVHSTSSYPCLFSNSSPFFTNNRFLGLGLGFEYQRKGRRILRRHVKFVISAQLSKSFSFTFGLDSPNLNSFQSHDLSKLSWRGPVPGDIAEVEAYCRIFRNSERLHSALMDALCNPLTGECSVSYEVSSDEKPQLEDKIVSVLGCMVSLVNKGRDDVLTGRSSIMNPFLDAEISEIEDKLPPLAVFRSEMKRCSESLHVALQNYLMPDDDRSLNVWRKLQKLKNVCYDSGFPRGEGYPCPTLFANWCPVYFSSSKEDTESEELETAFWTGGQVTEEGLTWLLDKGYKTIIDIRAETVRDNFYQAAVNDAISSGKINLVKIPVEVMTAPTMEQVARFASYVTDSSKRPIYLHSKEGVWRSSAMVSRWRQYMTRSSSQNVSSPPITPSNMLSHSTNSSAKLQDSSATAERSSLKKDITSVQDNFDATCSSIGTSDRSVSEKKYDEKTQGNAALNGISPDKEGSFPSFSSKINPLKAQFLLRISFPKKRCPHFWVAGRSHLPIMSIIKSKGRNSYRNLRTWLLEDVKEMWLFPMVLLWVLIV*