AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1026160


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026160 MtrunA17_Chr7g0244441 97.638 127 3 0 23 149 6 132 1.33e-87 251
Msa1026160 MtrunA17_Chr5g0437991 56.209 153 62 2 1 148 25 177 2.04e-50 159
Msa1026160 MtrunA17_Chr3g0106861 47.682 151 72 2 1 144 1 151 3.73e-37 124
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1026160 AT2G40435.1 53.378 148 64 2 1 143 1 148 5.50e-47 150
Msa1026160 AT3G56220.1 54.225 142 64 1 8 148 13 154 4.60e-46 147
Msa1026160 AT2G40435.3 56.800 125 49 2 1 120 1 125 3.98e-42 137
Msa1026160 AT2G40435.2 56.800 125 49 2 1 120 1 125 4.12e-42 136
Msa1026160 AT3G56220.2 57.522 113 48 0 8 120 13 125 1.04e-39 130

Find 61 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAACTCTTCTATGTATT+TGG 0.128186 7_1:-57769145 None:intergenic
AGCTTCTGTCTAGTTGATTT+TGG 0.179546 7_1:-57768682 None:intergenic
TTTCATGATTAATGTGCTTT+TGG 0.236031 7_1:+57769453 Msa1026160:CDS
GGTAGGCACCTCATATATTT+TGG 0.249338 7_1:-57772255 None:intergenic
GCATCTTATTATGGATAGTT+TGG 0.280192 7_1:+57772320 Msa1026160:three_prime_UTR
AGAATAACCTAAAAGTTTCT+AGG 0.285112 7_1:-57772651 None:intergenic
TTGTCATCAGCATCTTATTA+TGG 0.300219 7_1:+57772311 Msa1026160:three_prime_UTR
CTGCAAAGCCACCACATATA+TGG 0.302539 7_1:+57768641 Msa1026160:five_prime_UTR
GCCCTTACATAATATTGATA+TGG 0.303015 7_1:+57772287 Msa1026160:three_prime_UTR
GTTGAAAGGCAATAGGTTGA+TGG 0.387582 7_1:-57772702 None:intergenic
CTAGGATGTAACATGTAATA+AGG 0.391510 7_1:-57772633 None:intergenic
AGCCATATCAATATTATGTA+AGG 0.403871 7_1:-57772289 None:intergenic
TGGTATGCTGGTATCAATAC+TGG 0.411863 7_1:+57769489 Msa1026160:CDS
GTGATATGCCCGCTAATGTA+TGG 0.415150 7_1:+57772418 Msa1026160:three_prime_UTR
AAAAGAATATCGTATCTATA+GGG 0.419953 7_1:+57772457 Msa1026160:three_prime_UTR
CAACTCTTCTATGTATTTGG+AGG 0.422808 7_1:-57769142 None:intergenic
ACACCCTTTGTTCTTGCAAA+AGG 0.431451 7_1:-57772561 None:intergenic
ACCCTTTGGTTCCATATATG+TGG 0.438581 7_1:-57768652 None:intergenic
ATCACGGATATTGTTTCACT+TGG 0.443120 7_1:-57772218 None:intergenic
TATTATGGATAGTTTGGAAA+AGG 0.443533 7_1:+57772326 Msa1026160:three_prime_UTR
GAGTGTGAAAACCCTAGAAA+AGG 0.453059 7_1:+57769429 Msa1026160:CDS
GAGGGAATGAACTCTGAGTT+AGG 0.454266 7_1:+57769177 Msa1026160:CDS
CTCCTCCCACAGCTTCTAGC+TGG 0.462141 7_1:-57769573 None:intergenic
AGTATTGATACCAGCATACC+AGG 0.467026 7_1:-57769487 None:intergenic
TGAGTCCTCAACTACTCAAA+TGG 0.469573 7_1:+57769206 Msa1026160:CDS
TTGTGACATCTCGAAGTTGT+TGG 0.472854 7_1:-57768750 None:intergenic
CTCATCCATTTGAGTAGTTG+AGG 0.479517 7_1:-57769211 None:intergenic
AAAGAATAGCCCTGGTATGC+TGG 0.482593 7_1:+57769477 Msa1026160:CDS
ACCATGGGAATATGTTGATA+AGG 0.486547 7_1:-57772585 None:intergenic
GACTTGATGTACTTGATGCT+AGG 0.505174 7_1:+57769530 Msa1026160:CDS
AAATTCTGCCAAAATATATG+AGG 0.508014 7_1:+57772247 Msa1026160:three_prime_UTR
ACTTGATGTACTTGATGCTA+GGG 0.510074 7_1:+57769531 Msa1026160:CDS
CTTTGGTTCCATATATGTGG+TGG 0.513382 7_1:-57768649 None:intergenic
CACTTTCCAGCTAGAAGCTG+TGG 0.521335 7_1:+57769567 Msa1026160:CDS
TAGTTTGGAAAAGGAATGAA+TGG 0.527311 7_1:+57772335 Msa1026160:three_prime_UTR
GGAGGCGTCCACAATAATTG+AGG 0.529677 7_1:-57769124 None:intergenic
GGCAGAATTTGATGGAATCA+CGG 0.531542 7_1:-57772234 None:intergenic
TGAGGTGCCTACCACTTCAA+TGG 0.538186 7_1:+57772265 Msa1026160:three_prime_UTR
TCAAATGGATGAGCAACCTA+TGG 0.542120 7_1:+57769221 Msa1026160:CDS
AGTGTGAAAACCCTAGAAAA+GGG 0.544492 7_1:+57769430 Msa1026160:CDS
CGATATACCCATACATTAGC+GGG 0.547505 7_1:-57772426 None:intergenic
GAACAAAGCCTCAATTATTG+TGG 0.549027 7_1:+57769116 Msa1026160:CDS
GCCTTATCAACATATTCCCA+TGG 0.549449 7_1:+57772584 Msa1026160:three_prime_UTR
TTAAGAGTTCTCTCATGCAA+TGG 0.568468 7_1:-57772525 None:intergenic
GAAGCTATAAGAAGCTAGCA+TGG 0.570317 7_1:+57768699 Msa1026160:exon
TAACATGTAATAAGGTGCAA+TGG 0.571162 7_1:-57772625 None:intergenic
TGATATGCCCGCTAATGTAT+GGG 0.591360 7_1:+57772419 Msa1026160:three_prime_UTR
GCCATATCAATATTATGTAA+GGG 0.592517 7_1:-57772288 None:intergenic
ACCACATATATGGAACCAAA+GGG 0.598008 7_1:+57768651 Msa1026160:five_prime_UTR
CACCACATATATGGAACCAA+AGG 0.611250 7_1:+57768650 Msa1026160:five_prime_UTR
CTCAAAAGATCAAAGAAGAG+TGG 0.617358 7_1:+57768723 Msa1026160:CDS
CGATAGTATCAATGCGCAAG+TGG 0.619080 7_1:+57772075 Msa1026160:CDS
TCTTACATACATAGAAACCA+TGG 0.619324 7_1:-57772601 None:intergenic
GTAAGGGCCATTGAAGTGGT+AGG 0.625867 7_1:-57772272 None:intergenic
TTATGTAAGGGCCATTGAAG+TGG 0.626980 7_1:-57772276 None:intergenic
ACTTTCCAGCTAGAAGCTGT+GGG 0.644780 7_1:+57769568 Msa1026160:CDS
CTTACATACATAGAAACCAT+GGG 0.650049 7_1:-57772600 None:intergenic
ACGATATACCCATACATTAG+CGG 0.675005 7_1:-57772427 None:intergenic
TTCCAGCTAGAAGCTGTGGG+AGG 0.678404 7_1:+57769571 Msa1026160:CDS
GTATTGATACCAGCATACCA+GGG 0.698292 7_1:-57769486 None:intergenic
GTTGCAAGCAATCAAGAACA+CGG 0.713497 7_1:+57772111 Msa1026160:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+GGG - chr7_1:57771616-57771635 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr7_1:57771617-57771636 None:intergenic 0.0%
!! TATATATATATATATATATA+GGG - chr7_1:57771616-57771635 None:intergenic 0.0%
!! ATATATATATATATATATAT+AGG - chr7_1:57771617-57771636 None:intergenic 0.0%
!! ACATAAAAAAAAAAAAGTTA+AGG + chr7_1:57768858-57768877 Msa1026160:intron 10.0%
!! CATAAAAAAAAAAAAGTTAA+GGG + chr7_1:57768859-57768878 Msa1026160:intron 10.0%
!!! GTATTTTATTTTATTTTTGT+AGG + chr7_1:57769405-57769424 Msa1026160:intron 10.0%
!!! CACAAATTTTTTTTTTTTTT+AGG + chr7_1:57769894-57769913 Msa1026160:intron 10.0%
!!! TTTAATACTTTGTTTTTTAT+TGG + chr7_1:57770215-57770234 Msa1026160:intron 10.0%
!! CATTTAAATCAAATTATAAA+TGG - chr7_1:57770498-57770517 None:intergenic 10.0%
!!! ATTAATTAGTTTTTTAATGA+GGG - chr7_1:57770763-57770782 None:intergenic 10.0%
!! TATATATATATGTATATATG+GGG + chr7_1:57771662-57771681 Msa1026160:intron 10.0%
!! ATATATATATATATATGATG+AGG + chr7_1:57771994-57772013 Msa1026160:intron 10.0%
!! ACATAAAAAAAAAAAAGTTA+AGG + chr7_1:57768858-57768877 Msa1026160:intron 10.0%
!! CATAAAAAAAAAAAAGTTAA+GGG + chr7_1:57768859-57768878 Msa1026160:intron 10.0%
!!! GTATTTTATTTTATTTTTGT+AGG + chr7_1:57769405-57769424 Msa1026160:intron 10.0%
!!! CACAAATTTTTTTTTTTTTT+AGG + chr7_1:57769894-57769913 Msa1026160:intron 10.0%
!!! TTTAATACTTTGTTTTTTAT+TGG + chr7_1:57770215-57770234 Msa1026160:intron 10.0%
!! CATTTAAATCAAATTATAAA+TGG - chr7_1:57770498-57770517 None:intergenic 10.0%
!!! ATTAATTAGTTTTTTAATGA+GGG - chr7_1:57770763-57770782 None:intergenic 10.0%
!! TATATATATATGTATATATG+GGG + chr7_1:57771662-57771681 Msa1026160:intron 10.0%
!! ATATATATATATATATGATG+AGG + chr7_1:57771994-57772013 Msa1026160:intron 10.0%
!! TAGTAGAAAATATTAAACTA+TGG + chr7_1:57769055-57769074 Msa1026160:intron 15.0%
!! TCCTTTAATTAATTTCAAAT+GGG + chr7_1:57769081-57769100 Msa1026160:intron 15.0%
!!! TCTTCTTTTATATATTAACT+TGG + chr7_1:57769266-57769285 Msa1026160:intron 15.0%
!!! GCTTTATAAATAATTTTAAG+TGG + chr7_1:57769653-57769672 Msa1026160:intron 15.0%
!!! ATTTTTTTTTTTTTTAGGGA+TGG + chr7_1:57769899-57769918 Msa1026160:intron 15.0%
!! AAATATTTGGTTATACAATT+TGG + chr7_1:57769926-57769945 Msa1026160:intron 15.0%
!! AATATTTGGTTATACAATTT+GGG + chr7_1:57769927-57769946 Msa1026160:intron 15.0%
!!! TAAGTATTTTTCATGAATAT+TGG + chr7_1:57770013-57770032 Msa1026160:intron 15.0%
!! TATATCACAAAAACAATTAT+TGG - chr7_1:57770704-57770723 None:intergenic 15.0%
!!! GATTAATTAGTTTTTTAATG+AGG - chr7_1:57770764-57770783 None:intergenic 15.0%
!!! TTTTATTCATTTTGATTTTG+TGG + chr7_1:57770988-57771007 Msa1026160:intron 15.0%
!! TTTAAATAATAAGACACTTA+AGG + chr7_1:57771091-57771110 Msa1026160:intron 15.0%
!!! TCTAATTTTGATTTTTTCTA+AGG + chr7_1:57771466-57771485 Msa1026160:intron 15.0%
!! TAGTAGAAAATATTAAACTA+TGG + chr7_1:57769055-57769074 Msa1026160:intron 15.0%
!! TCCTTTAATTAATTTCAAAT+GGG + chr7_1:57769081-57769100 Msa1026160:intron 15.0%
!!! TCTTCTTTTATATATTAACT+TGG + chr7_1:57769266-57769285 Msa1026160:intron 15.0%
!!! GCTTTATAAATAATTTTAAG+TGG + chr7_1:57769653-57769672 Msa1026160:intron 15.0%
!!! ATTTTTTTTTTTTTTAGGGA+TGG + chr7_1:57769899-57769918 Msa1026160:intron 15.0%
!! AAATATTTGGTTATACAATT+TGG + chr7_1:57769926-57769945 Msa1026160:intron 15.0%
!! AATATTTGGTTATACAATTT+GGG + chr7_1:57769927-57769946 Msa1026160:intron 15.0%
!!! TAAGTATTTTTCATGAATAT+TGG + chr7_1:57770013-57770032 Msa1026160:intron 15.0%
!! TATATCACAAAAACAATTAT+TGG - chr7_1:57770704-57770723 None:intergenic 15.0%
!!! GATTAATTAGTTTTTTAATG+AGG - chr7_1:57770764-57770783 None:intergenic 15.0%
!!! TTTTATTCATTTTGATTTTG+TGG + chr7_1:57770988-57771007 Msa1026160:intron 15.0%
!! TTTAAATAATAAGACACTTA+AGG + chr7_1:57771091-57771110 Msa1026160:intron 15.0%
!!! TCTAATTTTGATTTTTTCTA+AGG + chr7_1:57771466-57771485 Msa1026160:intron 15.0%
!! ATTATCTAGTATATTCACTT+TGG + chr7_1:57768960-57768979 Msa1026160:intron 20.0%
!!! CATTTGAAATTAATTAAAGG+AGG - chr7_1:57769082-57769101 None:intergenic 20.0%
!! CTCCTTTAATTAATTTCAAA+TGG + chr7_1:57769080-57769099 Msa1026160:intron 20.0%
!!! ACCCATTTGAAATTAATTAA+AGG - chr7_1:57769085-57769104 None:intergenic 20.0%
!! ATTAATTTCAAATGGGTAAT+TGG + chr7_1:57769088-57769107 Msa1026160:intron 20.0%
!! ATATAAAAATAGAGTACAAG+AGG - chr7_1:57769296-57769315 None:intergenic 20.0%
!! TTATTTATAAAGCGAGATTA+AGG - chr7_1:57769646-57769665 None:intergenic 20.0%
!! TTAAAACCAATATAAAGAAG+AGG + chr7_1:57769710-57769729 Msa1026160:intron 20.0%
!!! TGAGAAAATCTTAATGTTTT+TGG + chr7_1:57769812-57769831 Msa1026160:intron 20.0%
!! TTAATTCAATTTGAGTAAGA+TGG + chr7_1:57770425-57770444 Msa1026160:intron 20.0%
!! TCTACTAACAAACAAAAATT+TGG + chr7_1:57770449-57770468 Msa1026160:intron 20.0%
!! CTACTAACAAACAAAAATTT+GGG + chr7_1:57770450-57770469 Msa1026160:intron 20.0%
!!! ATTTTTTAAACCCTCAAAAA+AGG - chr7_1:57770603-57770622 None:intergenic 20.0%
!! ATTCTGTAAAGAAAGAAAAA+GGG - chr7_1:57770786-57770805 None:intergenic 20.0%
!! AATTCTGTAAAGAAAGAAAA+AGG - chr7_1:57770787-57770806 None:intergenic 20.0%
!! ATAAATCGAAGGAAAAAAAA+GGG - chr7_1:57770882-57770901 None:intergenic 20.0%
!! ATACCATTAATAAGTTAGTA+TGG - chr7_1:57770937-57770956 None:intergenic 20.0%
!! TGACAATATAAACATCAAAT+TGG - chr7_1:57771328-57771347 None:intergenic 20.0%
!!! ATACCTATTTTTCTTTCATT+CGG + chr7_1:57771505-57771524 Msa1026160:intron 20.0%
!! ATTATTATGTTCTTGTCTAA+AGG + chr7_1:57771590-57771609 Msa1026160:intron 20.0%
!!! ATTTTACAAGTTTCAAGTTA+TGG + chr7_1:57772363-57772382 Msa1026160:three_prime_UTR 20.0%
!!! AGTAACATTTTGTATTTTAG+TGG + chr7_1:57772387-57772406 Msa1026160:three_prime_UTR 20.0%
!!! GTAACATTTTGTATTTTAGT+GGG + chr7_1:57772388-57772407 Msa1026160:three_prime_UTR 20.0%
!! AAAAAGAATATCGTATCTAT+AGG + chr7_1:57772456-57772475 Msa1026160:three_prime_UTR 20.0%
!! AAAAGAATATCGTATCTATA+GGG + chr7_1:57772457-57772476 Msa1026160:three_prime_UTR 20.0%
!! ATTATCTAGTATATTCACTT+TGG + chr7_1:57768960-57768979 Msa1026160:intron 20.0%
!!! CATTTGAAATTAATTAAAGG+AGG - chr7_1:57769082-57769101 None:intergenic 20.0%
!! CTCCTTTAATTAATTTCAAA+TGG + chr7_1:57769080-57769099 Msa1026160:intron 20.0%
!!! ACCCATTTGAAATTAATTAA+AGG - chr7_1:57769085-57769104 None:intergenic 20.0%
!! ATTAATTTCAAATGGGTAAT+TGG + chr7_1:57769088-57769107 Msa1026160:intron 20.0%
!! ATATAAAAATAGAGTACAAG+AGG - chr7_1:57769296-57769315 None:intergenic 20.0%
!! TTATTTATAAAGCGAGATTA+AGG - chr7_1:57769646-57769665 None:intergenic 20.0%
!! TTAAAACCAATATAAAGAAG+AGG + chr7_1:57769710-57769729 Msa1026160:intron 20.0%
!!! TGAGAAAATCTTAATGTTTT+TGG + chr7_1:57769812-57769831 Msa1026160:intron 20.0%
!! TTAATTCAATTTGAGTAAGA+TGG + chr7_1:57770425-57770444 Msa1026160:intron 20.0%
!! TCTACTAACAAACAAAAATT+TGG + chr7_1:57770449-57770468 Msa1026160:intron 20.0%
!! CTACTAACAAACAAAAATTT+GGG + chr7_1:57770450-57770469 Msa1026160:intron 20.0%
!!! ATTTTTTAAACCCTCAAAAA+AGG - chr7_1:57770603-57770622 None:intergenic 20.0%
!! ATTCTGTAAAGAAAGAAAAA+GGG - chr7_1:57770786-57770805 None:intergenic 20.0%
!! AATTCTGTAAAGAAAGAAAA+AGG - chr7_1:57770787-57770806 None:intergenic 20.0%
!! ATAAATCGAAGGAAAAAAAA+GGG - chr7_1:57770882-57770901 None:intergenic 20.0%
!! ATACCATTAATAAGTTAGTA+TGG - chr7_1:57770937-57770956 None:intergenic 20.0%
!! TGACAATATAAACATCAAAT+TGG - chr7_1:57771328-57771347 None:intergenic 20.0%
!!! ATACCTATTTTTCTTTCATT+CGG + chr7_1:57771505-57771524 Msa1026160:intron 20.0%
!! ATTATTATGTTCTTGTCTAA+AGG + chr7_1:57771590-57771609 Msa1026160:intron 20.0%
!!! ATTTTACAAGTTTCAAGTTA+TGG + chr7_1:57772363-57772382 Msa1026160:three_prime_UTR 20.0%
!!! AGTAACATTTTGTATTTTAG+TGG + chr7_1:57772387-57772406 Msa1026160:three_prime_UTR 20.0%
!!! GTAACATTTTGTATTTTAGT+GGG + chr7_1:57772388-57772407 Msa1026160:three_prime_UTR 20.0%
!! AAAAAGAATATCGTATCTAT+AGG + chr7_1:57772456-57772475 Msa1026160:three_prime_UTR 20.0%
!! AAAAGAATATCGTATCTATA+GGG + chr7_1:57772457-57772476 Msa1026160:three_prime_UTR 20.0%
!!! TTTATGTGTGAGTTTTTTTG+TGG + chr7_1:57768823-57768842 Msa1026160:intron 25.0%
! TAATAACATTGTGTCTTCAT+TGG - chr7_1:57769003-57769022 None:intergenic 25.0%
!! TTTCATGATTAATGTGCTTT+TGG + chr7_1:57769453-57769472 Msa1026160:CDS 25.0%
! TAAGAACCTCTTCTTTATAT+TGG - chr7_1:57769719-57769738 None:intergenic 25.0%
! GTGAGTGTATATATATGTTA+AGG + chr7_1:57769758-57769777 Msa1026160:intron 25.0%
!! AAAGGAGTATATAATTCCAT+CGG + chr7_1:57769840-57769859 Msa1026160:intron 25.0%
! TTCAATATTTATATACCCGA+TGG - chr7_1:57769859-57769878 None:intergenic 25.0%
! AATATTGAAGAAGTCTTTCA+TGG + chr7_1:57769870-57769889 Msa1026160:intron 25.0%
! TTATTATCAGTCATTTCAAG+TGG - chr7_1:57770076-57770095 None:intergenic 25.0%
! AAGTATATATACTTACCAAG+AGG + chr7_1:57770161-57770180 Msa1026160:intron 25.0%
!!! AAAAACAATTATTGGCTTAG+TGG - chr7_1:57770696-57770715 None:intergenic 25.0%
! GATAAATCGAAGGAAAAAAA+AGG - chr7_1:57770883-57770902 None:intergenic 25.0%
!!! CAATTTTTAGGATAAATCGA+AGG - chr7_1:57770893-57770912 None:intergenic 25.0%
! GAAATTAACACAATCACAAT+AGG - chr7_1:57771056-57771075 None:intergenic 25.0%
!! ACTCATGCTTTAAATTGTAA+TGG + chr7_1:57771130-57771149 Msa1026160:intron 25.0%
! AAACATTCGAAAATACGATT+TGG - chr7_1:57771177-57771196 None:intergenic 25.0%
! ATTCCGAATGAAAGAAAAAT+AGG - chr7_1:57771511-57771530 None:intergenic 25.0%
! AAGTGATTAAATACATCCTA+AGG + chr7_1:57771745-57771764 Msa1026160:intron 25.0%
! GCAAGTAAATAACTAAAAAG+TGG + chr7_1:57771728-57771747 Msa1026160:intron 25.0%
!!! TTATTTTATGCAGAGTCATA+AGG + chr7_1:57772051-57772070 Msa1026160:intron 25.0%
!!! TATATTTTGGCAGAATTTGA+TGG - chr7_1:57772245-57772264 None:intergenic 25.0%
! AAATTCTGCCAAAATATATG+AGG + chr7_1:57772247-57772266 Msa1026160:three_prime_UTR 25.0%
! GCCATATCAATATTATGTAA+GGG - chr7_1:57772291-57772310 None:intergenic 25.0%
! AGCCATATCAATATTATGTA+AGG - chr7_1:57772292-57772311 None:intergenic 25.0%
! TATTATGGATAGTTTGGAAA+AGG + chr7_1:57772326-57772345 Msa1026160:three_prime_UTR 25.0%
! AGAATAACCTAAAAGTTTCT+AGG - chr7_1:57772654-57772673 None:intergenic 25.0%
!!! TTTATGTGTGAGTTTTTTTG+TGG + chr7_1:57768823-57768842 Msa1026160:intron 25.0%
! TAATAACATTGTGTCTTCAT+TGG - chr7_1:57769003-57769022 None:intergenic 25.0%
!! TTTCATGATTAATGTGCTTT+TGG + chr7_1:57769453-57769472 Msa1026160:CDS 25.0%
! TAAGAACCTCTTCTTTATAT+TGG - chr7_1:57769719-57769738 None:intergenic 25.0%
! GTGAGTGTATATATATGTTA+AGG + chr7_1:57769758-57769777 Msa1026160:intron 25.0%
!! AAAGGAGTATATAATTCCAT+CGG + chr7_1:57769840-57769859 Msa1026160:intron 25.0%
! TTCAATATTTATATACCCGA+TGG - chr7_1:57769859-57769878 None:intergenic 25.0%
! AATATTGAAGAAGTCTTTCA+TGG + chr7_1:57769870-57769889 Msa1026160:intron 25.0%
! TTATTATCAGTCATTTCAAG+TGG - chr7_1:57770076-57770095 None:intergenic 25.0%
! AAGTATATATACTTACCAAG+AGG + chr7_1:57770161-57770180 Msa1026160:intron 25.0%
!!! AAAAACAATTATTGGCTTAG+TGG - chr7_1:57770696-57770715 None:intergenic 25.0%
! GATAAATCGAAGGAAAAAAA+AGG - chr7_1:57770883-57770902 None:intergenic 25.0%
!!! CAATTTTTAGGATAAATCGA+AGG - chr7_1:57770893-57770912 None:intergenic 25.0%
! GAAATTAACACAATCACAAT+AGG - chr7_1:57771056-57771075 None:intergenic 25.0%
!! ACTCATGCTTTAAATTGTAA+TGG + chr7_1:57771130-57771149 Msa1026160:intron 25.0%
! AAACATTCGAAAATACGATT+TGG - chr7_1:57771177-57771196 None:intergenic 25.0%
! ATTCCGAATGAAAGAAAAAT+AGG - chr7_1:57771511-57771530 None:intergenic 25.0%
! AAGTGATTAAATACATCCTA+AGG + chr7_1:57771745-57771764 Msa1026160:intron 25.0%
! GCAAGTAAATAACTAAAAAG+TGG + chr7_1:57771728-57771747 Msa1026160:intron 25.0%
!!! TTATTTTATGCAGAGTCATA+AGG + chr7_1:57772051-57772070 Msa1026160:intron 25.0%
!!! TATATTTTGGCAGAATTTGA+TGG - chr7_1:57772245-57772264 None:intergenic 25.0%
! AAATTCTGCCAAAATATATG+AGG + chr7_1:57772247-57772266 Msa1026160:three_prime_UTR 25.0%
! GCCATATCAATATTATGTAA+GGG - chr7_1:57772291-57772310 None:intergenic 25.0%
! AGCCATATCAATATTATGTA+AGG - chr7_1:57772292-57772311 None:intergenic 25.0%
! TATTATGGATAGTTTGGAAA+AGG + chr7_1:57772326-57772345 Msa1026160:three_prime_UTR 25.0%
! AGAATAACCTAAAAGTTTCT+AGG - chr7_1:57772654-57772673 None:intergenic 25.0%
AAATATTGAGCTCTTCGTTT+AGG - chr7_1:57768924-57768943 None:intergenic 30.0%
CTTCAACTCTTCTATGTATT+TGG - chr7_1:57769148-57769167 None:intergenic 30.0%
ATCTAAATACGCAAAAGATG+TGG - chr7_1:57769363-57769382 None:intergenic 30.0%
! AATCATGAAACCCTTTTCTA+GGG - chr7_1:57769443-57769462 None:intergenic 30.0%
! TAATCATGAAACCCTTTTCT+AGG - chr7_1:57769444-57769463 None:intergenic 30.0%
!!! TTAATGTTTTTGGAGCTCAA+AGG + chr7_1:57769822-57769841 Msa1026160:intron 30.0%
! AAGGAGTATATAATTCCATC+GGG + chr7_1:57769841-57769860 Msa1026160:intron 30.0%
AGTGTTATATATACTCCTCT+TGG - chr7_1:57770179-57770198 None:intergenic 30.0%
! TTTTAAACCCTCAAAAAAGG+CGG - chr7_1:57770600-57770619 None:intergenic 30.0%
CAAAGAAAAAACTCTTTGCA+AGG + chr7_1:57770629-57770648 Msa1026160:intron 30.0%
!! TTAATGAGGGTGTTTGATAT+TGG - chr7_1:57770750-57770769 None:intergenic 30.0%
AAAAAAAGGGAAGAAATGGA+TGG - chr7_1:57770869-57770888 None:intergenic 30.0%
AGGAAAAAAAAGGGAAGAAA+TGG - chr7_1:57770873-57770892 None:intergenic 30.0%
CGTCCATACTAACTTATTAA+TGG + chr7_1:57770931-57770950 Msa1026160:intron 30.0%
TGTGATTGTGTTAATTTCCT+TGG + chr7_1:57771058-57771077 Msa1026160:intron 30.0%
!! ATTTAAAGCATTGACAACCA+AGG - chr7_1:57771078-57771097 None:intergenic 30.0%
!! GTTGGCTAGTTTATTATACA+AGG - chr7_1:57771548-57771567 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + chr7_1:57771786-57771805 Msa1026160:intron 30.0%
! AACAAGACAAAAAAGTGTAC+TGG - chr7_1:57772170-57772189 None:intergenic 30.0%
GCCCTTACATAATATTGATA+TGG + chr7_1:57772287-57772306 Msa1026160:three_prime_UTR 30.0%
TTGTCATCAGCATCTTATTA+TGG + chr7_1:57772311-57772330 Msa1026160:three_prime_UTR 30.0%
GCATCTTATTATGGATAGTT+TGG + chr7_1:57772320-57772339 Msa1026160:three_prime_UTR 30.0%
TAGTTTGGAAAAGGAATGAA+TGG + chr7_1:57772335-57772354 Msa1026160:three_prime_UTR 30.0%
!!! ACATTTTGTATTTTAGTGGG+TGG + chr7_1:57772391-57772410 Msa1026160:three_prime_UTR 30.0%
!!! CATTTTGTATTTTAGTGGGT+GGG + chr7_1:57772392-57772411 Msa1026160:three_prime_UTR 30.0%
!!! ATTTTGTATTTTAGTGGGTG+GGG + chr7_1:57772393-57772412 Msa1026160:three_prime_UTR 30.0%
CTTACATACATAGAAACCAT+GGG - chr7_1:57772603-57772622 None:intergenic 30.0%
TCTTACATACATAGAAACCA+TGG - chr7_1:57772604-57772623 None:intergenic 30.0%
TAACATGTAATAAGGTGCAA+TGG - chr7_1:57772628-57772647 None:intergenic 30.0%
CTAGGATGTAACATGTAATA+AGG - chr7_1:57772636-57772655 None:intergenic 30.0%
! GTTACATCCTAGAAACTTTT+AGG + chr7_1:57772644-57772663 Msa1026160:three_prime_UTR 30.0%
AAATATTGAGCTCTTCGTTT+AGG - chr7_1:57768924-57768943 None:intergenic 30.0%
CTTCAACTCTTCTATGTATT+TGG - chr7_1:57769148-57769167 None:intergenic 30.0%
ATCTAAATACGCAAAAGATG+TGG - chr7_1:57769363-57769382 None:intergenic 30.0%
! AATCATGAAACCCTTTTCTA+GGG - chr7_1:57769443-57769462 None:intergenic 30.0%
! TAATCATGAAACCCTTTTCT+AGG - chr7_1:57769444-57769463 None:intergenic 30.0%
!!! TTAATGTTTTTGGAGCTCAA+AGG + chr7_1:57769822-57769841 Msa1026160:intron 30.0%
! AAGGAGTATATAATTCCATC+GGG + chr7_1:57769841-57769860 Msa1026160:intron 30.0%
AGTGTTATATATACTCCTCT+TGG - chr7_1:57770179-57770198 None:intergenic 30.0%
! TTTTAAACCCTCAAAAAAGG+CGG - chr7_1:57770600-57770619 None:intergenic 30.0%
CAAAGAAAAAACTCTTTGCA+AGG + chr7_1:57770629-57770648 Msa1026160:intron 30.0%
!! TTAATGAGGGTGTTTGATAT+TGG - chr7_1:57770750-57770769 None:intergenic 30.0%
AAAAAAAGGGAAGAAATGGA+TGG - chr7_1:57770869-57770888 None:intergenic 30.0%
AGGAAAAAAAAGGGAAGAAA+TGG - chr7_1:57770873-57770892 None:intergenic 30.0%
CGTCCATACTAACTTATTAA+TGG + chr7_1:57770931-57770950 Msa1026160:intron 30.0%
TGTGATTGTGTTAATTTCCT+TGG + chr7_1:57771058-57771077 Msa1026160:intron 30.0%
!! ATTTAAAGCATTGACAACCA+AGG - chr7_1:57771078-57771097 None:intergenic 30.0%
!! GTTGGCTAGTTTATTATACA+AGG - chr7_1:57771548-57771567 None:intergenic 30.0%
ACCTTCTAACAAAAACAAGT+GGG + chr7_1:57771786-57771805 Msa1026160:intron 30.0%
! AACAAGACAAAAAAGTGTAC+TGG - chr7_1:57772170-57772189 None:intergenic 30.0%
GCCCTTACATAATATTGATA+TGG + chr7_1:57772287-57772306 Msa1026160:three_prime_UTR 30.0%
TTGTCATCAGCATCTTATTA+TGG + chr7_1:57772311-57772330 Msa1026160:three_prime_UTR 30.0%
GCATCTTATTATGGATAGTT+TGG + chr7_1:57772320-57772339 Msa1026160:three_prime_UTR 30.0%
TAGTTTGGAAAAGGAATGAA+TGG + chr7_1:57772335-57772354 Msa1026160:three_prime_UTR 30.0%
!!! ACATTTTGTATTTTAGTGGG+TGG + chr7_1:57772391-57772410 Msa1026160:three_prime_UTR 30.0%
!!! CATTTTGTATTTTAGTGGGT+GGG + chr7_1:57772392-57772411 Msa1026160:three_prime_UTR 30.0%
!!! ATTTTGTATTTTAGTGGGTG+GGG + chr7_1:57772393-57772412 Msa1026160:three_prime_UTR 30.0%
CTTACATACATAGAAACCAT+GGG - chr7_1:57772603-57772622 None:intergenic 30.0%
TCTTACATACATAGAAACCA+TGG - chr7_1:57772604-57772623 None:intergenic 30.0%
TAACATGTAATAAGGTGCAA+TGG - chr7_1:57772628-57772647 None:intergenic 30.0%
CTAGGATGTAACATGTAATA+AGG - chr7_1:57772636-57772655 None:intergenic 30.0%
! GTTACATCCTAGAAACTTTT+AGG + chr7_1:57772644-57772663 Msa1026160:three_prime_UTR 30.0%
ACCACATATATGGAACCAAA+GGG + chr7_1:57768651-57768670 Msa1026160:five_prime_UTR 35.0%
!!! ATTTTGGTTTTCTCACCCTT+TGG - chr7_1:57768669-57768688 None:intergenic 35.0%
!! AGCTTCTGTCTAGTTGATTT+TGG - chr7_1:57768685-57768704 None:intergenic 35.0%
CTCAAAAGATCAAAGAAGAG+TGG + chr7_1:57768723-57768742 Msa1026160:CDS 35.0%
ATATTCCAACCCAATAAAGG+AGG + chr7_1:57768882-57768901 Msa1026160:intron 35.0%
! TCTTCGTTTAGGTTATATGC+TGG - chr7_1:57768913-57768932 None:intergenic 35.0%
GAACAAAGCCTCAATTATTG+TGG + chr7_1:57769116-57769135 Msa1026160:CDS 35.0%
CAACTCTTCTATGTATTTGG+AGG - chr7_1:57769145-57769164 None:intergenic 35.0%
AGAAGAGTTGAAGCAAAAAG+TGG + chr7_1:57769155-57769174 Msa1026160:CDS 35.0%
! GAGAAATAGAGTACTACCAT+AGG - chr7_1:57769240-57769259 None:intergenic 35.0%
AGTGTGAAAACCCTAGAAAA+GGG + chr7_1:57769430-57769449 Msa1026160:CDS 35.0%
ACTTGATGTACTTGATGCTA+GGG + chr7_1:57769531-57769550 Msa1026160:CDS 35.0%
TAGGGATGGTCACAAATATT+TGG + chr7_1:57769913-57769932 Msa1026160:intron 35.0%
! TGGGAAAAGGGTATACTAAT+GGG - chr7_1:57770043-57770062 None:intergenic 35.0%
! ATGGGAAAAGGGTATACTAA+TGG - chr7_1:57770044-57770063 None:intergenic 35.0%
! ATTAGTATACCCTTTTCCCA+TGG + chr7_1:57770043-57770062 Msa1026160:intron 35.0%
! CAAGTAATCACGTGAGTTTT+AGG - chr7_1:57770404-57770423 None:intergenic 35.0%
TTTAAACCCTCAAAAAAGGC+GGG - chr7_1:57770599-57770618 None:intergenic 35.0%
ACATGGAACCATAATGTTGT+GGG - chr7_1:57770662-57770681 None:intergenic 35.0%
TACATGGAACCATAATGTTG+TGG - chr7_1:57770663-57770682 None:intergenic 35.0%
!! ACAATTATTGGCTTAGTGGT+TGG - chr7_1:57770692-57770711 None:intergenic 35.0%
TGATATTGGATATGAGGTAG+TGG - chr7_1:57770736-57770755 None:intergenic 35.0%
GGTGTTTGATATTGGATATG+AGG - chr7_1:57770742-57770761 None:intergenic 35.0%
! GCATCACAGTCACAATTTTT+AGG - chr7_1:57770905-57770924 None:intergenic 35.0%
! TAATGCGCTCTTTCTTTTGT+TGG - chr7_1:57771566-57771585 None:intergenic 35.0%
GTTATAGCAACATACACCTT+AGG - chr7_1:57771764-57771783 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG + chr7_1:57771785-57771804 Msa1026160:intron 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - chr7_1:57771790-57771809 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr7_1:57771809-57771828 Msa1026160:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr7_1:57771845-57771864 Msa1026160:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr7_1:57771934-57771953 None:intergenic 35.0%
AAGTGGTTAATTACACCCTA+AGG + chr7_1:57771894-57771913 Msa1026160:intron 35.0%
TTTAGCAAAGCTACTCCTTA+GGG - chr7_1:57771912-57771931 None:intergenic 35.0%
! TTTTAGCAAAGCTACTCCTT+AGG - chr7_1:57771913-57771932 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr7_1:57771934-57771953 Msa1026160:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr7_1:57771845-57771864 None:intergenic 35.0%
TCAACAAGAATCACATGAGA+GGG - chr7_1:57772028-57772047 None:intergenic 35.0%
TTCAACAAGAATCACATGAG+AGG - chr7_1:57772029-57772048 None:intergenic 35.0%
ATCACGGATATTGTTTCACT+TGG - chr7_1:57772221-57772240 None:intergenic 35.0%
ACGATATACCCATACATTAG+CGG - chr7_1:57772430-57772449 None:intergenic 35.0%
TTAAGAGTTCTCTCATGCAA+TGG - chr7_1:57772528-57772547 None:intergenic 35.0%
! TTGTCCTTTTGCAAGAACAA+AGG + chr7_1:57772557-57772576 Msa1026160:three_prime_UTR 35.0%
! TGTCCTTTTGCAAGAACAAA+GGG + chr7_1:57772558-57772577 Msa1026160:three_prime_UTR 35.0%
ACCATGGGAATATGTTGATA+AGG - chr7_1:57772588-57772607 None:intergenic 35.0%
ACCACATATATGGAACCAAA+GGG + chr7_1:57768651-57768670 Msa1026160:five_prime_UTR 35.0%
!!! ATTTTGGTTTTCTCACCCTT+TGG - chr7_1:57768669-57768688 None:intergenic 35.0%
!! AGCTTCTGTCTAGTTGATTT+TGG - chr7_1:57768685-57768704 None:intergenic 35.0%
CTCAAAAGATCAAAGAAGAG+TGG + chr7_1:57768723-57768742 Msa1026160:CDS 35.0%
ATATTCCAACCCAATAAAGG+AGG + chr7_1:57768882-57768901 Msa1026160:intron 35.0%
! TCTTCGTTTAGGTTATATGC+TGG - chr7_1:57768913-57768932 None:intergenic 35.0%
GAACAAAGCCTCAATTATTG+TGG + chr7_1:57769116-57769135 Msa1026160:CDS 35.0%
CAACTCTTCTATGTATTTGG+AGG - chr7_1:57769145-57769164 None:intergenic 35.0%
AGAAGAGTTGAAGCAAAAAG+TGG + chr7_1:57769155-57769174 Msa1026160:CDS 35.0%
! GAGAAATAGAGTACTACCAT+AGG - chr7_1:57769240-57769259 None:intergenic 35.0%
AGTGTGAAAACCCTAGAAAA+GGG + chr7_1:57769430-57769449 Msa1026160:CDS 35.0%
ACTTGATGTACTTGATGCTA+GGG + chr7_1:57769531-57769550 Msa1026160:CDS 35.0%
TAGGGATGGTCACAAATATT+TGG + chr7_1:57769913-57769932 Msa1026160:intron 35.0%
! TGGGAAAAGGGTATACTAAT+GGG - chr7_1:57770043-57770062 None:intergenic 35.0%
! ATGGGAAAAGGGTATACTAA+TGG - chr7_1:57770044-57770063 None:intergenic 35.0%
! ATTAGTATACCCTTTTCCCA+TGG + chr7_1:57770043-57770062 Msa1026160:intron 35.0%
! CAAGTAATCACGTGAGTTTT+AGG - chr7_1:57770404-57770423 None:intergenic 35.0%
TTTAAACCCTCAAAAAAGGC+GGG - chr7_1:57770599-57770618 None:intergenic 35.0%
ACATGGAACCATAATGTTGT+GGG - chr7_1:57770662-57770681 None:intergenic 35.0%
TACATGGAACCATAATGTTG+TGG - chr7_1:57770663-57770682 None:intergenic 35.0%
!! ACAATTATTGGCTTAGTGGT+TGG - chr7_1:57770692-57770711 None:intergenic 35.0%
TGATATTGGATATGAGGTAG+TGG - chr7_1:57770736-57770755 None:intergenic 35.0%
GGTGTTTGATATTGGATATG+AGG - chr7_1:57770742-57770761 None:intergenic 35.0%
! GCATCACAGTCACAATTTTT+AGG - chr7_1:57770905-57770924 None:intergenic 35.0%
! TAATGCGCTCTTTCTTTTGT+TGG - chr7_1:57771566-57771585 None:intergenic 35.0%
GTTATAGCAACATACACCTT+AGG - chr7_1:57771764-57771783 None:intergenic 35.0%
CACCTTCTAACAAAAACAAG+TGG + chr7_1:57771785-57771804 Msa1026160:intron 35.0%
!!! ACCCACTTGTTTTTGTTAGA+AGG - chr7_1:57771790-57771809 None:intergenic 35.0%
TGTGTTCTAGCAAATCCTAT+AGG + chr7_1:57771809-57771828 Msa1026160:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG + chr7_1:57771845-57771864 Msa1026160:intron 35.0%
ACTCCCACATAAAAACTAGT+GGG - chr7_1:57771934-57771953 None:intergenic 35.0%
AAGTGGTTAATTACACCCTA+AGG + chr7_1:57771894-57771913 Msa1026160:intron 35.0%
TTTAGCAAAGCTACTCCTTA+GGG - chr7_1:57771912-57771931 None:intergenic 35.0%
! TTTTAGCAAAGCTACTCCTT+AGG - chr7_1:57771913-57771932 None:intergenic 35.0%
ACTCCCACATAAAAACTAGT+GGG + chr7_1:57771934-57771953 Msa1026160:intron 35.0%
!!! ACACCCACTAGTTTTTATGT+GGG - chr7_1:57771845-57771864 None:intergenic 35.0%
TCAACAAGAATCACATGAGA+GGG - chr7_1:57772028-57772047 None:intergenic 35.0%
TTCAACAAGAATCACATGAG+AGG - chr7_1:57772029-57772048 None:intergenic 35.0%
ATCACGGATATTGTTTCACT+TGG - chr7_1:57772221-57772240 None:intergenic 35.0%
ACGATATACCCATACATTAG+CGG - chr7_1:57772430-57772449 None:intergenic 35.0%
TTAAGAGTTCTCTCATGCAA+TGG - chr7_1:57772528-57772547 None:intergenic 35.0%
! TTGTCCTTTTGCAAGAACAA+AGG + chr7_1:57772557-57772576 Msa1026160:three_prime_UTR 35.0%
! TGTCCTTTTGCAAGAACAAA+GGG + chr7_1:57772558-57772577 Msa1026160:three_prime_UTR 35.0%
ACCATGGGAATATGTTGATA+AGG - chr7_1:57772588-57772607 None:intergenic 35.0%
! CTTTGGTTCCATATATGTGG+TGG - chr7_1:57768652-57768671 None:intergenic 40.0%
CACCACATATATGGAACCAA+AGG + chr7_1:57768650-57768669 Msa1026160:five_prime_UTR 40.0%
! ACCCTTTGGTTCCATATATG+TGG - chr7_1:57768655-57768674 None:intergenic 40.0%
GAAGCTATAAGAAGCTAGCA+TGG + chr7_1:57768699-57768718 Msa1026160:exon 40.0%
TTGTGACATCTCGAAGTTGT+TGG - chr7_1:57768753-57768772 None:intergenic 40.0%
ACAAGCTCAACTGCTGTAAT+TGG + chr7_1:57768769-57768788 Msa1026160:intron 40.0%
GGGATATTCCAACCCAATAA+AGG + chr7_1:57768879-57768898 Msa1026160:intron 40.0%
AGAGTTGAAGCAAAAAGTGG+AGG + chr7_1:57769158-57769177 Msa1026160:CDS 40.0%
GAGTTGAAGCAAAAAGTGGA+GGG + chr7_1:57769159-57769178 Msa1026160:CDS 40.0%
TGAGTCCTCAACTACTCAAA+TGG + chr7_1:57769206-57769225 Msa1026160:CDS 40.0%
CTCATCCATTTGAGTAGTTG+AGG - chr7_1:57769214-57769233 None:intergenic 40.0%
TCAAATGGATGAGCAACCTA+TGG + chr7_1:57769221-57769240 Msa1026160:CDS 40.0%
GAGTGTGAAAACCCTAGAAA+AGG + chr7_1:57769429-57769448 Msa1026160:CDS 40.0%
!! CTTTTGGAAAAGAATAGCCC+TGG + chr7_1:57769469-57769488 Msa1026160:CDS 40.0%
! GTATTGATACCAGCATACCA+GGG - chr7_1:57769489-57769508 None:intergenic 40.0%
!! AGTATTGATACCAGCATACC+AGG - chr7_1:57769490-57769509 None:intergenic 40.0%
TGGTATGCTGGTATCAATAC+TGG + chr7_1:57769489-57769508 Msa1026160:CDS 40.0%
!! ACTGGAAGCTTTTGAAGATC+TGG + chr7_1:57769507-57769526 Msa1026160:CDS 40.0%
!! CTGGAAGCTTTTGAAGATCT+GGG + chr7_1:57769508-57769527 Msa1026160:CDS 40.0%
GACTTGATGTACTTGATGCT+AGG + chr7_1:57769530-57769549 Msa1026160:CDS 40.0%
!! GTGTGAGCGTTGTACAATTT+TGG + chr7_1:57769789-57769808 Msa1026160:intron 40.0%
! TTCAAGTGGTTTGTCACCAT+GGG - chr7_1:57770062-57770081 None:intergenic 40.0%
! TTTCAAGTGGTTTGTCACCA+TGG - chr7_1:57770063-57770082 None:intergenic 40.0%
GATTCGAACCCACAACATTA+TGG + chr7_1:57770651-57770670 Msa1026160:intron 40.0%
GGGTGAGATCAAAGGAATAA+GGG - chr7_1:57770830-57770849 None:intergenic 40.0%
AAAAATACCCGTGTATCGCA+CGG + chr7_1:57771366-57771385 Msa1026160:intron 40.0%
!!! ACACCCACTAGTTTTCATGT+GGG + chr7_1:57771696-57771715 Msa1026160:intron 40.0%
ACTCCCACATGAAAACTAGT+GGG - chr7_1:57771702-57771721 None:intergenic 40.0%
GTGTTCTAGCAAATGCCTAT+AGG - chr7_1:57771827-57771846 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr7_1:57771844-57771863 Msa1026160:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr7_1:57771933-57771952 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG + chr7_1:57771933-57771952 Msa1026160:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr7_1:57771844-57771863 None:intergenic 40.0%
AATCACATGAGAGGGGAATT+TGG - chr7_1:57772020-57772039 None:intergenic 40.0%
CAACAAGAATCACATGAGAG+GGG - chr7_1:57772027-57772046 None:intergenic 40.0%
GTTGCAAGCAATCAAGAACA+CGG + chr7_1:57772111-57772130 Msa1026160:CDS 40.0%
GGCAGAATTTGATGGAATCA+CGG - chr7_1:57772237-57772256 None:intergenic 40.0%
! GGTAGGCACCTCATATATTT+TGG - chr7_1:57772258-57772277 None:intergenic 40.0%
TTATGTAAGGGCCATTGAAG+TGG - chr7_1:57772279-57772298 None:intergenic 40.0%
TGATATGCCCGCTAATGTAT+GGG + chr7_1:57772419-57772438 Msa1026160:three_prime_UTR 40.0%
CGATATACCCATACATTAGC+GGG - chr7_1:57772429-57772448 None:intergenic 40.0%
ACACCCTTTGTTCTTGCAAA+AGG - chr7_1:57772564-57772583 None:intergenic 40.0%
GCCTTATCAACATATTCCCA+TGG + chr7_1:57772584-57772603 Msa1026160:three_prime_UTR 40.0%
! CTTTGGTTCCATATATGTGG+TGG - chr7_1:57768652-57768671 None:intergenic 40.0%
CACCACATATATGGAACCAA+AGG + chr7_1:57768650-57768669 Msa1026160:five_prime_UTR 40.0%
! ACCCTTTGGTTCCATATATG+TGG - chr7_1:57768655-57768674 None:intergenic 40.0%
GAAGCTATAAGAAGCTAGCA+TGG + chr7_1:57768699-57768718 Msa1026160:exon 40.0%
TTGTGACATCTCGAAGTTGT+TGG - chr7_1:57768753-57768772 None:intergenic 40.0%
ACAAGCTCAACTGCTGTAAT+TGG + chr7_1:57768769-57768788 Msa1026160:intron 40.0%
GGGATATTCCAACCCAATAA+AGG + chr7_1:57768879-57768898 Msa1026160:intron 40.0%
AGAGTTGAAGCAAAAAGTGG+AGG + chr7_1:57769158-57769177 Msa1026160:CDS 40.0%
GAGTTGAAGCAAAAAGTGGA+GGG + chr7_1:57769159-57769178 Msa1026160:CDS 40.0%
TGAGTCCTCAACTACTCAAA+TGG + chr7_1:57769206-57769225 Msa1026160:CDS 40.0%
CTCATCCATTTGAGTAGTTG+AGG - chr7_1:57769214-57769233 None:intergenic 40.0%
TCAAATGGATGAGCAACCTA+TGG + chr7_1:57769221-57769240 Msa1026160:CDS 40.0%
GAGTGTGAAAACCCTAGAAA+AGG + chr7_1:57769429-57769448 Msa1026160:CDS 40.0%
!! CTTTTGGAAAAGAATAGCCC+TGG + chr7_1:57769469-57769488 Msa1026160:CDS 40.0%
! GTATTGATACCAGCATACCA+GGG - chr7_1:57769489-57769508 None:intergenic 40.0%
!! AGTATTGATACCAGCATACC+AGG - chr7_1:57769490-57769509 None:intergenic 40.0%
TGGTATGCTGGTATCAATAC+TGG + chr7_1:57769489-57769508 Msa1026160:CDS 40.0%
!! ACTGGAAGCTTTTGAAGATC+TGG + chr7_1:57769507-57769526 Msa1026160:CDS 40.0%
!! CTGGAAGCTTTTGAAGATCT+GGG + chr7_1:57769508-57769527 Msa1026160:CDS 40.0%
GACTTGATGTACTTGATGCT+AGG + chr7_1:57769530-57769549 Msa1026160:CDS 40.0%
!! GTGTGAGCGTTGTACAATTT+TGG + chr7_1:57769789-57769808 Msa1026160:intron 40.0%
! TTCAAGTGGTTTGTCACCAT+GGG - chr7_1:57770062-57770081 None:intergenic 40.0%
! TTTCAAGTGGTTTGTCACCA+TGG - chr7_1:57770063-57770082 None:intergenic 40.0%
GATTCGAACCCACAACATTA+TGG + chr7_1:57770651-57770670 Msa1026160:intron 40.0%
GGGTGAGATCAAAGGAATAA+GGG - chr7_1:57770830-57770849 None:intergenic 40.0%
AAAAATACCCGTGTATCGCA+CGG + chr7_1:57771366-57771385 Msa1026160:intron 40.0%
!!! ACACCCACTAGTTTTCATGT+GGG + chr7_1:57771696-57771715 Msa1026160:intron 40.0%
ACTCCCACATGAAAACTAGT+GGG - chr7_1:57771702-57771721 None:intergenic 40.0%
GTGTTCTAGCAAATGCCTAT+AGG - chr7_1:57771827-57771846 None:intergenic 40.0%
!!! CACACCCACTAGTTTTTATG+TGG + chr7_1:57771844-57771863 Msa1026160:intron 40.0%
CACTCCCACATAAAAACTAG+TGG - chr7_1:57771933-57771952 None:intergenic 40.0%
CACTCCCACATAAAAACTAG+TGG + chr7_1:57771933-57771952 Msa1026160:intron 40.0%
!!! CACACCCACTAGTTTTTATG+TGG - chr7_1:57771844-57771863 None:intergenic 40.0%
AATCACATGAGAGGGGAATT+TGG - chr7_1:57772020-57772039 None:intergenic 40.0%
CAACAAGAATCACATGAGAG+GGG - chr7_1:57772027-57772046 None:intergenic 40.0%
GTTGCAAGCAATCAAGAACA+CGG + chr7_1:57772111-57772130 Msa1026160:CDS 40.0%
GGCAGAATTTGATGGAATCA+CGG - chr7_1:57772237-57772256 None:intergenic 40.0%
! GGTAGGCACCTCATATATTT+TGG - chr7_1:57772258-57772277 None:intergenic 40.0%
TTATGTAAGGGCCATTGAAG+TGG - chr7_1:57772279-57772298 None:intergenic 40.0%
TGATATGCCCGCTAATGTAT+GGG + chr7_1:57772419-57772438 Msa1026160:three_prime_UTR 40.0%
CGATATACCCATACATTAGC+GGG - chr7_1:57772429-57772448 None:intergenic 40.0%
ACACCCTTTGTTCTTGCAAA+AGG - chr7_1:57772564-57772583 None:intergenic 40.0%
GCCTTATCAACATATTCCCA+TGG + chr7_1:57772584-57772603 Msa1026160:three_prime_UTR 40.0%
CTGCAAAGCCACCACATATA+TGG + chr7_1:57768641-57768660 Msa1026160:five_prime_UTR 45.0%
CTTCTCCTCCTTTATTGGGT+TGG - chr7_1:57768890-57768909 None:intergenic 45.0%
CTGGCTTCTCCTCCTTTATT+GGG - chr7_1:57768894-57768913 None:intergenic 45.0%
GAGGGAATGAACTCTGAGTT+AGG + chr7_1:57769177-57769196 Msa1026160:CDS 45.0%
AAAGAATAGCCCTGGTATGC+TGG + chr7_1:57769477-57769496 Msa1026160:CDS 45.0%
ACTTTCCAGCTAGAAGCTGT+GGG + chr7_1:57769568-57769587 Msa1026160:CDS 45.0%
GGTTTGTCACCATGGGAAAA+GGG - chr7_1:57770055-57770074 None:intergenic 45.0%
! TGGTTTGTCACCATGGGAAA+AGG - chr7_1:57770056-57770075 None:intergenic 45.0%
!!! CGTGAGTTTTAGGTGCTCAA+GGG - chr7_1:57770394-57770413 None:intergenic 45.0%
!!! ACGTGAGTTTTAGGTGCTCA+AGG - chr7_1:57770395-57770414 None:intergenic 45.0%
! GTTAAACAGTGGCGGGATTA+GGG - chr7_1:57770571-57770590 None:intergenic 45.0%
GGATTAGGTTAAACAGTGGC+GGG - chr7_1:57770578-57770597 None:intergenic 45.0%
GGGATTAGGTTAAACAGTGG+CGG - chr7_1:57770579-57770598 None:intergenic 45.0%
!!! ACCTAATCCCGCCTTTTTTG+AGG + chr7_1:57770589-57770608 Msa1026160:intron 45.0%
!!! CCTAATCCCGCCTTTTTTGA+GGG + chr7_1:57770590-57770609 Msa1026160:intron 45.0%
! TAGTGGTTGGAGTGCTTACA+TGG - chr7_1:57770679-57770698 None:intergenic 45.0%
GGGGTGAGATCAAAGGAATA+AGG - chr7_1:57770831-57770850 None:intergenic 45.0%
AAAATACCCGTGTATCGCAC+GGG + chr7_1:57771367-57771386 Msa1026160:intron 45.0%
!!! CACACCCACTAGTTTTCATG+TGG + chr7_1:57771695-57771714 Msa1026160:intron 45.0%
CACTCCCACATGAAAACTAG+TGG - chr7_1:57771703-57771722 None:intergenic 45.0%
CGATAGTATCAATGCGCAAG+TGG + chr7_1:57772075-57772094 Msa1026160:CDS 45.0%
GTGATATGCCCGCTAATGTA+TGG + chr7_1:57772418-57772437 Msa1026160:three_prime_UTR 45.0%
CTGCAAAGCCACCACATATA+TGG + chr7_1:57768641-57768660 Msa1026160:five_prime_UTR 45.0%
CTTCTCCTCCTTTATTGGGT+TGG - chr7_1:57768890-57768909 None:intergenic 45.0%
CTGGCTTCTCCTCCTTTATT+GGG - chr7_1:57768894-57768913 None:intergenic 45.0%
GAGGGAATGAACTCTGAGTT+AGG + chr7_1:57769177-57769196 Msa1026160:CDS 45.0%
AAAGAATAGCCCTGGTATGC+TGG + chr7_1:57769477-57769496 Msa1026160:CDS 45.0%
ACTTTCCAGCTAGAAGCTGT+GGG + chr7_1:57769568-57769587 Msa1026160:CDS 45.0%
GGTTTGTCACCATGGGAAAA+GGG - chr7_1:57770055-57770074 None:intergenic 45.0%
! TGGTTTGTCACCATGGGAAA+AGG - chr7_1:57770056-57770075 None:intergenic 45.0%
!!! CGTGAGTTTTAGGTGCTCAA+GGG - chr7_1:57770394-57770413 None:intergenic 45.0%
!!! ACGTGAGTTTTAGGTGCTCA+AGG - chr7_1:57770395-57770414 None:intergenic 45.0%
! GTTAAACAGTGGCGGGATTA+GGG - chr7_1:57770571-57770590 None:intergenic 45.0%
GGATTAGGTTAAACAGTGGC+GGG - chr7_1:57770578-57770597 None:intergenic 45.0%
GGGATTAGGTTAAACAGTGG+CGG - chr7_1:57770579-57770598 None:intergenic 45.0%
!!! ACCTAATCCCGCCTTTTTTG+AGG + chr7_1:57770589-57770608 Msa1026160:intron 45.0%
!!! CCTAATCCCGCCTTTTTTGA+GGG + chr7_1:57770590-57770609 Msa1026160:intron 45.0%
! TAGTGGTTGGAGTGCTTACA+TGG - chr7_1:57770679-57770698 None:intergenic 45.0%
GGGGTGAGATCAAAGGAATA+AGG - chr7_1:57770831-57770850 None:intergenic 45.0%
AAAATACCCGTGTATCGCAC+GGG + chr7_1:57771367-57771386 Msa1026160:intron 45.0%
!!! CACACCCACTAGTTTTCATG+TGG + chr7_1:57771695-57771714 Msa1026160:intron 45.0%
CACTCCCACATGAAAACTAG+TGG - chr7_1:57771703-57771722 None:intergenic 45.0%
CGATAGTATCAATGCGCAAG+TGG + chr7_1:57772075-57772094 Msa1026160:CDS 45.0%
GTGATATGCCCGCTAATGTA+TGG + chr7_1:57772418-57772437 Msa1026160:three_prime_UTR 45.0%
!!! ACAAATTTTTTTTTTTTTTA+GGG + chr7_1:57769895-57769914 Msa1026160:intron 5.0%
!! AATAAATAAAATTTAAAAAG+AGG - chr7_1:57770360-57770379 None:intergenic 5.0%
!!! TCTTTTTAAATTTTATTTAT+TGG + chr7_1:57770359-57770378 Msa1026160:intron 5.0%
!! TATATATATATATGTATATA+TGG + chr7_1:57771660-57771679 Msa1026160:intron 5.0%
!! ATATATATATATGTATATAT+GGG + chr7_1:57771661-57771680 Msa1026160:intron 5.0%
!! ATATATATATATATATATAG+GGG - chr7_1:57771974-57771993 None:intergenic 5.0%
!!! ACAAATTTTTTTTTTTTTTA+GGG + chr7_1:57769895-57769914 Msa1026160:intron 5.0%
!! AATAAATAAAATTTAAAAAG+AGG - chr7_1:57770360-57770379 None:intergenic 5.0%
!!! TCTTTTTAAATTTTATTTAT+TGG + chr7_1:57770359-57770378 Msa1026160:intron 5.0%
!! TATATATATATATGTATATA+TGG + chr7_1:57771660-57771679 Msa1026160:intron 5.0%
!! ATATATATATATGTATATAT+GGG + chr7_1:57771661-57771680 Msa1026160:intron 5.0%
!! ATATATATATATATATATAG+GGG - chr7_1:57771974-57771993 None:intergenic 5.0%
! GCTGGCTTCTCCTCCTTTAT+TGG - chr7_1:57768895-57768914 None:intergenic 50.0%
!! GGAGGCGTCCACAATAATTG+AGG - chr7_1:57769127-57769146 None:intergenic 50.0%
CACTTTCCAGCTAGAAGCTG+TGG + chr7_1:57769567-57769586 Msa1026160:CDS 50.0%
! GGTTAAACAGTGGCGGGATT+AGG - chr7_1:57770572-57770591 None:intergenic 50.0%
GGCGGGATTAGGTTAAACAG+TGG - chr7_1:57770582-57770601 None:intergenic 50.0%
CCCTCAAAAAAGGCGGGATT+AGG - chr7_1:57770593-57770612 None:intergenic 50.0%
TCCTTTGATCTCACCCCAGA+AGG + chr7_1:57770834-57770853 Msa1026160:intron 50.0%
! TGAGGTGCCTACCACTTCAA+TGG + chr7_1:57772265-57772284 Msa1026160:three_prime_UTR 50.0%
GTAAGGGCCATTGAAGTGGT+AGG - chr7_1:57772275-57772294 None:intergenic 50.0%
! GCTGGCTTCTCCTCCTTTAT+TGG - chr7_1:57768895-57768914 None:intergenic 50.0%
!! GGAGGCGTCCACAATAATTG+AGG - chr7_1:57769127-57769146 None:intergenic 50.0%
CACTTTCCAGCTAGAAGCTG+TGG + chr7_1:57769567-57769586 Msa1026160:CDS 50.0%
! GGTTAAACAGTGGCGGGATT+AGG - chr7_1:57770572-57770591 None:intergenic 50.0%
GGCGGGATTAGGTTAAACAG+TGG - chr7_1:57770582-57770601 None:intergenic 50.0%
CCCTCAAAAAAGGCGGGATT+AGG - chr7_1:57770593-57770612 None:intergenic 50.0%
TCCTTTGATCTCACCCCAGA+AGG + chr7_1:57770834-57770853 Msa1026160:intron 50.0%
! TGAGGTGCCTACCACTTCAA+TGG + chr7_1:57772265-57772284 Msa1026160:three_prime_UTR 50.0%
GTAAGGGCCATTGAAGTGGT+AGG - chr7_1:57772275-57772294 None:intergenic 50.0%
TTCCAGCTAGAAGCTGTGGG+AGG + chr7_1:57769571-57769590 Msa1026160:CDS 55.0%
!! GCCTTCTGGGGTGAGATCAA+AGG - chr7_1:57770838-57770857 None:intergenic 55.0%
ATGGAAACCGCTGCCTTCTG+GGG - chr7_1:57770850-57770869 None:intergenic 55.0%
GATGGAAACCGCTGCCTTCT+GGG - chr7_1:57770851-57770870 None:intergenic 55.0%
ACCTTGACCCGTGCGATACA+CGG - chr7_1:57771377-57771396 None:intergenic 55.0%
TTCCAGCTAGAAGCTGTGGG+AGG + chr7_1:57769571-57769590 Msa1026160:CDS 55.0%
!! GCCTTCTGGGGTGAGATCAA+AGG - chr7_1:57770838-57770857 None:intergenic 55.0%
ATGGAAACCGCTGCCTTCTG+GGG - chr7_1:57770850-57770869 None:intergenic 55.0%
GATGGAAACCGCTGCCTTCT+GGG - chr7_1:57770851-57770870 None:intergenic 55.0%
ACCTTGACCCGTGCGATACA+CGG - chr7_1:57771377-57771396 None:intergenic 55.0%
CTCCTCCCACAGCTTCTAGC+TGG - chr7_1:57769576-57769595 None:intergenic 60.0%
GATCTCACCCCAGAAGGCAG+CGG + chr7_1:57770840-57770859 Msa1026160:intron 60.0%
GGATGGAAACCGCTGCCTTC+TGG - chr7_1:57770852-57770871 None:intergenic 60.0%
CCTTGACCCGTGCGATACAC+GGG - chr7_1:57771376-57771395 None:intergenic 60.0%
CTCCTCCCACAGCTTCTAGC+TGG - chr7_1:57769576-57769595 None:intergenic 60.0%
GATCTCACCCCAGAAGGCAG+CGG + chr7_1:57770840-57770859 Msa1026160:intron 60.0%
GGATGGAAACCGCTGCCTTC+TGG - chr7_1:57770852-57770871 None:intergenic 60.0%
CCTTGACCCGTGCGATACAC+GGG - chr7_1:57771376-57771395 None:intergenic 60.0%
CCCGTGTATCGCACGGGTCA+AGG + chr7_1:57771373-57771392 Msa1026160:intron 65.0%
CCCGTGTATCGCACGGGTCA+AGG + chr7_1:57771373-57771392 Msa1026160:intron 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 57768628 57772710 57768628 ID=Msa1026160;Name=Msa1026160
chr7_1 mRNA 57768628 57772710 57768628 ID=Msa1026160-mRNA-1;Parent=Msa1026160;Name=Msa1026160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=90|1|1|1|0.33|0.25|4|563|149
chr7_1 exon 57768628 57768783 57768628 ID=Msa1026160-mRNA-1:exon:11558;Parent=Msa1026160-mRNA-1
chr7_1 exon 57769114 57769242 57769114 ID=Msa1026160-mRNA-1:exon:11559;Parent=Msa1026160-mRNA-1
chr7_1 exon 57769427 57769597 57769427 ID=Msa1026160-mRNA-1:exon:11560;Parent=Msa1026160-mRNA-1
chr7_1 exon 57772064 57772710 57772064 ID=Msa1026160-mRNA-1:exon:11561;Parent=Msa1026160-mRNA-1
chr7_1 five_prime_UTR 57768628 57768717 57768628 ID=Msa1026160-mRNA-1:five_prime_utr;Parent=Msa1026160-mRNA-1
chr7_1 CDS 57768718 57768783 57768718 ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1 CDS 57769114 57769242 57769114 ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1 CDS 57769427 57769597 57769427 ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1 CDS 57772064 57772147 57772064 ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1 three_prime_UTR 57772148 57772710 57772148 ID=Msa1026160-mRNA-1:three_prime_utr;Parent=Msa1026160-mRNA-1
Gene Sequence

>Msa1026160

ATGGACTCAAAAGATCAAAGAAGAGTGGCTCTCCAACAACTTCGAGATGTCACAAGCTCAACTGCTATGAACAAAGCCTCAATTATTGTGGACGCCTCCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCTGAGTTAGGAAACGTTGAGTCCTCAACTACTCAAATGGATGAGCAACCTATGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCATGATTAATGTGCTTTTGGAAAAGAATAGCCCTGGTATGCTGGTATCAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTACTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGATAGTCATAAGGACGATAGTATCAATGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACTCATCAAAATGA

Protein sequence

>Msa1026160

MDSKDQRRVALQQLRDVTSSTAMNKASIIVDASKYIEELKQKVEGMNSELGNVESSTTQMDEQPMVSVKTLEKGFMINVLLEKNSPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDSSK*