AlfalfaGEDB | Msa1026160

M. sativa cultivar zhongmu-4 / Msa1026160

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1026160	XP_024626508.1	97.638	127	3	0	23	149	1	127	1.29e-83	251

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1026160	G7KX21	97.638	127	3	0	23	149	6	132	6.91e-84	251

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000610	Msa1026160	0.862422	5.127149e-64	-8.615850e-47
Msa0000800	Msa1026160	-0.828823	7.257547e-55	-8.615850e-47
Msa0001510	Msa1026160	0.823022	1.732655e-53	-8.615850e-47
Msa0002110	Msa1026160	0.887729	1.104253e-72	-8.615850e-47
Msa0002690	Msa1026160	0.869136	3.882249e-66	-8.615850e-47
Msa0002700	Msa1026160	0.871576	6.151263e-67	-8.615850e-47
Msa0003340	Msa1026160	0.863573	2.260957e-64	-8.615850e-47
Msa0003840	Msa1026160	-0.817460	3.260707e-52	-8.615850e-47
Msa0004180	Msa1026160	0.872495	3.044571e-67	-8.615850e-47
Msa0005500	Msa1026160	0.877624	5.412958e-69	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1026160	MtrunA17_Chr7g0244441	97.638	127	3	0	23	149	6	132	1.33e-87	251
Msa1026160	MtrunA17_Chr5g0437991	56.209	153	62	2	1	148	25	177	2.04e-50	159
Msa1026160	MtrunA17_Chr3g0106861	47.682	151	72	2	1	144	1	151	3.73e-37	124

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1026160	AT2G40435.1	53.378	148	64	2	1	143	1	148	5.50e-47	150
Msa1026160	AT3G56220.1	54.225	142	64	1	8	148	13	154	4.60e-46	147
Msa1026160	AT2G40435.3	56.800	125	49	2	1	120	1	125	3.98e-42	137
Msa1026160	AT2G40435.2	56.800	125	49	2	1	120	1	125	4.12e-42	136
Msa1026160	AT3G56220.2	57.522	113	48	0	8	120	13	125	1.04e-39	130

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Find 61 sgRNAs with CRISPR-Local

Find 480 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGAATATCGTATCTATA+GGG	0.419953	7_1:+57772457	Msa1026160:three_prime_UTR
AAAGAATAGCCCTGGTATGC+TGG	0.482593	7_1:+57769477	Msa1026160:CDS
AAATTCTGCCAAAATATATG+AGG	0.508014	7_1:+57772247	Msa1026160:three_prime_UTR
ACACCCTTTGTTCTTGCAAA+AGG	0.431451	7_1:-57772561	None:intergenic
ACCACATATATGGAACCAAA+GGG	0.598008	7_1:+57768651	Msa1026160:five_prime_UTR
ACCATGGGAATATGTTGATA+AGG	0.486547	7_1:-57772585	None:intergenic
ACCCTTTGGTTCCATATATG+TGG	0.438581	7_1:-57768652	None:intergenic
ACGATATACCCATACATTAG+CGG	0.675005	7_1:-57772427	None:intergenic
ACTTGATGTACTTGATGCTA+GGG	0.510074	7_1:+57769531	Msa1026160:CDS
ACTTTCCAGCTAGAAGCTGT+GGG	0.644780	7_1:+57769568	Msa1026160:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATATTGAGCTCTTCGTTT+AGG	-	chr7_1:57768924-57768943	None:intergenic	30.0%
CTTCAACTCTTCTATGTATT+TGG	-	chr7_1:57769148-57769167	None:intergenic	30.0%
ATCTAAATACGCAAAAGATG+TGG	-	chr7_1:57769363-57769382	None:intergenic	30.0%
AGTGTTATATATACTCCTCT+TGG	-	chr7_1:57770179-57770198	None:intergenic	30.0%
CAAAGAAAAAACTCTTTGCA+AGG	+	chr7_1:57770629-57770648	Msa1026160:intron	30.0%
AAAAAAAGGGAAGAAATGGA+TGG	-	chr7_1:57770869-57770888	None:intergenic	30.0%
AGGAAAAAAAAGGGAAGAAA+TGG	-	chr7_1:57770873-57770892	None:intergenic	30.0%
CGTCCATACTAACTTATTAA+TGG	+	chr7_1:57770931-57770950	Msa1026160:intron	30.0%
TGTGATTGTGTTAATTTCCT+TGG	+	chr7_1:57771058-57771077	Msa1026160:intron	30.0%
ACCTTCTAACAAAAACAAGT+GGG	+	chr7_1:57771786-57771805	Msa1026160:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_1	gene	57768628	57772710	57768628	ID=Msa1026160;Name=Msa1026160
chr7_1	mRNA	57768628	57772710	57768628	ID=Msa1026160-mRNA-1;Parent=Msa1026160;Name=Msa1026160-mRNA-1;_AED=0.13;_eAED=0.13;_QI=90\|1\|1\|1\|0.33\|0.25\|4\|563\|149
chr7_1	exon	57768628	57768783	57768628	ID=Msa1026160-mRNA-1:exon:11558;Parent=Msa1026160-mRNA-1
chr7_1	exon	57769114	57769242	57769114	ID=Msa1026160-mRNA-1:exon:11559;Parent=Msa1026160-mRNA-1
chr7_1	exon	57769427	57769597	57769427	ID=Msa1026160-mRNA-1:exon:11560;Parent=Msa1026160-mRNA-1
chr7_1	exon	57772064	57772710	57772064	ID=Msa1026160-mRNA-1:exon:11561;Parent=Msa1026160-mRNA-1
chr7_1	five_prime_UTR	57768628	57768717	57768628	ID=Msa1026160-mRNA-1:five_prime_utr;Parent=Msa1026160-mRNA-1
chr7_1	CDS	57768718	57768783	57768718	ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1	CDS	57769114	57769242	57769114	ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1	CDS	57769427	57769597	57769427	ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1	CDS	57772064	57772147	57772064	ID=Msa1026160-mRNA-1:cds;Parent=Msa1026160-mRNA-1
chr7_1	three_prime_UTR	57772148	57772710	57772148	ID=Msa1026160-mRNA-1:three_prime_utr;Parent=Msa1026160-mRNA-1

Gene Sequence

>Msa1026160

ATGGACTCAAAAGATCAAAGAAGAGTGGCTCTCCAACAACTTCGAGATGTCACAAGCTCAACTGCTATGAACAAAGCCTCAATTATTGTGGACGCCTCCAAATACATAGAAGAGTTGAAGCAAAAAGTGGAGGGAATGAACTCTGAGTTAGGAAACGTTGAGTCCTCAACTACTCAAATGGATGAGCAACCTATGGTGAGTGTGAAAACCCTAGAAAAGGGTTTCATGATTAATGTGCTTTTGGAAAAGAATAGCCCTGGTATGCTGGTATCAATACTGGAAGCTTTTGAAGATCTGGGACTTGATGTACTTGATGCTAGGGTTTCTTGTGAAGACACTTTCCAGCTAGAAGCTGTGGGAGGAGATAGTCATAAGGACGATAGTATCAATGCGCAAGTGGTGAAACAAGCAGTGTTGCAAGCAATCAAGAACACGGACTCATCAAAATGA

Protein sequence

>Msa1026160

MDSKDQRRVALQQLRDVTSSTAMNKASIIVDASKYIEELKQKVEGMNSELGNVESSTTQMDEQPMVSVKTLEKGFMINVLLEKNSPGMLVSILEAFEDLGLDVLDARVSCEDTFQLEAVGGDSHKDDSINAQVVKQAVLQAIKNTDSSK*