AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1418780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418780 MtrunA17_Chr4g0076941 96.266 482 14 3 1 482 1 478 0.0 959
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1418780 AT2G23390.1 64.237 439 147 5 44 481 39 468 0.0 597
Msa1418780 AT2G23390.2 58.163 294 113 5 44 336 39 323 1.36e-117 348

Find 109 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGCTTCTTCATTGTTT+TGG 0.187588 tig0024643:-4818 Msa1418780:CDS
TATCTCCTCCGATAAGATTT+AGG 0.198654 tig0024643:+2832 None:intergenic
TTCATCCTTTATGACAAAAT+TGG 0.214692 tig0024643:-516 Msa1418780:three_prime_UTR
TATCAAATACTATTATTTAA+TGG 0.223800 tig0024643:+554 None:intergenic
TCCTAAAATCTTCATCAATA+AGG 0.250782 tig0024643:+2024 None:intergenic
ATCGGAGGAGATACTTTGTT+TGG 0.255198 tig0024643:-2822 Msa1418780:CDS
ATCAGTTGTGTTCCTGTAAA+AGG 0.287829 tig0024643:+3065 None:intergenic
ATGAAACTCTTGCGTGATTC+TGG 0.301919 tig0024643:-715 Msa1418780:CDS
TACTTTGTTTGGGCGCCTAT+GGG 0.320826 tig0024643:-2811 Msa1418780:CDS
TGGACTTGAAGCATAATAAA+AGG 0.322434 tig0024643:-4089 Msa1418780:CDS
CTTCATTGTTTCTGCTATCA+AGG 0.339354 tig0024643:-4265 Msa1418780:CDS
AACAGTAGAAGCAGGAGCTC+AGG 0.354032 tig0024643:-2102 Msa1418780:CDS
ATCTCCTCCGATAAGATTTA+GGG 0.357422 tig0024643:+2833 None:intergenic
ATACTTTGTTTGGGCGCCTA+TGG 0.360153 tig0024643:-2812 Msa1418780:CDS
CTCTTCTTCCGTTAAGGAAA+AGG 0.368696 tig0024643:-4532 Msa1418780:CDS
TTCTTCAGATTCTGTTGTGC+TGG 0.371658 tig0024643:+4707 None:intergenic
TAACTTAGGATAATAAGAAT+TGG 0.381000 tig0024643:+4368 None:intergenic
CCTCCGCGGTTATGAAATAA+AGG 0.384557 tig0024643:-4010 Msa1418780:intron
GATGCCATTGTGAACATAAC+TGG 0.385483 tig0024643:-436 Msa1418780:three_prime_UTR
ACTATCCTCTTCTTCCGTTA+AGG 0.393455 tig0024643:-4538 Msa1418780:CDS
GCGTGATTCTGGTCCTTTCA+AGG 0.412822 tig0024643:-704 Msa1418780:CDS
TCGGAGGAGATACTTTGTTT+GGG 0.421122 tig0024643:-2821 Msa1418780:CDS
AAGATCCTTGGACCGGTGAC+AGG 0.427977 tig0024643:+4324 None:intergenic
AAGTATATACACACATTGGC+AGG 0.435627 tig0024643:-666 Msa1418780:three_prime_UTR
TTTAGTTCGTGAATCTTCTC+AGG 0.441303 tig0024643:-1985 Msa1418780:intron
AGAAATGGATTGAACTTGTC+TGG 0.443521 tig0024643:+4588 None:intergenic
TGATACTGCATTCCAATCCT+AGG 0.444656 tig0024643:+4153 None:intergenic
AGAAAAGCATGCGATAGAAA+TGG 0.445063 tig0024643:+4573 None:intergenic
GTTCCTGTAAAAGGTGTAGA+AGG 0.446583 tig0024643:+3074 None:intergenic
CTCAACAAGGTTTCCTCCCT+AGG 0.446994 tig0024643:-4170 Msa1418780:CDS
GTCCCCTTCACCCCTGTCAC+CGG 0.447336 tig0024643:-4336 Msa1418780:CDS
CAAGGTTTCCTCCCTAGGAT+TGG 0.453306 tig0024643:-4165 Msa1418780:CDS
TCTTCTTCCGTTAAGGAAAA+GGG 0.453381 tig0024643:-4531 Msa1418780:CDS
ATAATAGTATTTGATACGTT+GGG 0.458271 tig0024643:-547 Msa1418780:three_prime_UTR
TGGACCGGTGACAGGGGTGA+AGG 0.472861 tig0024643:+4332 None:intergenic
GCAGGTGCCCTAAATCTTAT+CGG 0.472899 tig0024643:-2840 Msa1418780:CDS
CATGCATCCCATTGGGTGGA+TGG 0.473633 tig0024643:+4633 None:intergenic
AACGAATTCACCATAGGAAT+GGG 0.478774 tig0024643:+4434 None:intergenic
TACAGGACACCTTCCTTGAA+AGG 0.480946 tig0024643:+691 None:intergenic
CCTTAGCGACGATGTGGTGT+GGG 0.483870 tig0024643:+4502 None:intergenic
TGCAACGTGGCGAGGAGTGA+GGG 0.484366 tig0024643:-4969 Msa1418780:five_prime_UTR
GCATGTGCTCTTGATGCTAC+AGG 0.485050 tig0024643:-4615 Msa1418780:CDS
ACTTTGTTTGGGCGCCTATG+GGG 0.488318 tig0024643:-2810 Msa1418780:CDS
AATAATAGTATTTGATACGT+TGG 0.492414 tig0024643:-548 Msa1418780:three_prime_UTR
GGGACACAGGATTGTAACTT+AGG 0.494260 tig0024643:+4354 None:intergenic
AATCTTCATCAATAAGGTAA+TGG 0.498534 tig0024643:+2030 None:intergenic
CAAGAGCACATGCATCCCAT+TGG 0.498784 tig0024643:+4625 None:intergenic
AAACGAATTCACCATAGGAA+TGG 0.502628 tig0024643:+4433 None:intergenic
AGATATTCCATCCACCCAAT+GGG 0.507877 tig0024643:-4640 Msa1418780:CDS
AAGAGCACATGCATCCCATT+GGG 0.508867 tig0024643:+4626 None:intergenic
GGACCGGTGACAGGGGTGAA+GGG 0.511776 tig0024643:+4333 None:intergenic
GGATTGGAATGCAGTATCAC+TGG 0.516565 tig0024643:-4149 Msa1418780:CDS
TGTATTGGAAGGCAAAGCAC+TGG 0.517699 tig0024643:-3101 Msa1418780:intron
ACAGTAGAAGCAGGAGCTCA+GGG 0.519444 tig0024643:-2101 Msa1418780:CDS
AATCTTAAAACAGTAGAAGC+AGG 0.528907 tig0024643:-2110 Msa1418780:CDS
CTTTGTTTGGGCGCCTATGG+GGG 0.531740 tig0024643:-2809 Msa1418780:CDS
CAGATATTCCATCCACCCAA+TGG 0.533439 tig0024643:-4641 Msa1418780:CDS
AGTAAATTTGCAACGTGGCG+AGG 0.533665 tig0024643:-4977 Msa1418780:five_prime_UTR
TGTGTGTATATACTTTCTAC+AGG 0.534692 tig0024643:+674 None:intergenic
GACCGGTGACAGGGGTGAAG+GGG 0.538489 tig0024643:+4334 None:intergenic
TGGCAGCTATATGTTGTCAC+TGG 0.539979 tig0024643:+2050 None:intergenic
TATCTCAAGACCCATTCCTA+TGG 0.542512 tig0024643:-4444 Msa1418780:CDS
TCACCCCTGTCACCGGTCCA+AGG 0.547400 tig0024643:-4329 Msa1418780:CDS
TCCTTAGCGACGATGTGGTG+TGG 0.549897 tig0024643:+4501 None:intergenic
GATTCTGGTCCTTTCAAGGA+AGG 0.553359 tig0024643:-700 Msa1418780:CDS
GACAATGAGGAACTAGTAGC+AGG 0.554102 tig0024643:-2858 Msa1418780:CDS
GTGTTACGAAGTAAGATCCT+TGG 0.554201 tig0024643:+4312 None:intergenic
AAAATTAGTATAGTTGCGGT+TGG 0.560859 tig0024643:+4125 None:intergenic
AGATCCTTGGACCGGTGACA+GGG 0.562433 tig0024643:+4325 None:intergenic
CCCACACCACATCGTCGCTA+AGG 0.564713 tig0024643:-4502 Msa1418780:CDS
CATCAAAATTAGTATAGTTG+CGG 0.572132 tig0024643:+4121 None:intergenic
GCAACGTGGCGAGGAGTGAG+GGG 0.573897 tig0024643:-4968 Msa1418780:five_prime_UTR
TTGCAACGTGGCGAGGAGTG+AGG 0.574434 tig0024643:-4970 Msa1418780:five_prime_UTR
GAAGATTTGCGATGATGAGA+CGG 0.577972 tig0024643:+4894 None:intergenic
GTATTGGAAGGCAAAGCACT+GGG 0.581666 tig0024643:-3100 Msa1418780:intron
CTTTATGACAAAATTGGAGA+CGG 0.585341 tig0024643:-510 Msa1418780:three_prime_UTR
GAATGGGTCTTGAGATAGAG+AGG 0.593847 tig0024643:+4450 None:intergenic
GACAGGGGTGAAGGGGACAC+AGG 0.595023 tig0024643:+4341 None:intergenic
GATACTGCATTCCAATCCTA+GGG 0.601582 tig0024643:+4154 None:intergenic
CTTCCGTTAAGGAAAAGGGA+TGG 0.609262 tig0024643:-4527 Msa1418780:CDS
ACGAAGTAAGATCCTTGGAC+CGG 0.613289 tig0024643:+4317 None:intergenic
AGCACATGCATCCCATTGGG+TGG 0.614598 tig0024643:+4629 None:intergenic
TTTCAGAGGGAAAAGTGACA+TGG 0.623878 tig0024643:+4211 None:intergenic
TATTGTTGCTGAAGACAATG+AGG 0.626085 tig0024643:-2871 Msa1418780:CDS
GGGGTACTCCTTTCCTGACG+AGG 0.627955 tig0024643:-2941 Msa1418780:CDS
TGTATGTACAGTTGAATCAG+TGG 0.630123 tig0024643:-577 Msa1418780:three_prime_UTR
AGTATATACACACATTGGCA+GGG 0.630667 tig0024643:-665 Msa1418780:three_prime_UTR
TAGAAAGTATATACACACAT+TGG 0.632394 tig0024643:-670 Msa1418780:three_prime_UTR
GTGATGGCAGCAGTAGCGAT+AGG 0.633008 tig0024643:-4945 Msa1418780:CDS
GAATATCCTTAGCGACGATG+TGG 0.635094 tig0024643:+4496 None:intergenic
TGGCACAAATTCACTCAACA+AGG 0.637208 tig0024643:-4183 Msa1418780:CDS
CAGCAGTAGCGATAGGAGTG+AGG 0.642392 tig0024643:-4938 Msa1418780:CDS
GATACGTCAAGAGCGCAAGA+AGG 0.642401 tig0024643:-4061 Msa1418780:CDS
CAACGTGGCGAGGAGTGAGG+GGG 0.644733 tig0024643:-4967 Msa1418780:five_prime_UTR
GGTGAACATAAGATTGAGCG+TGG 0.646705 tig0024643:-2080 Msa1418780:CDS
GGGTACTCCTTTCCTGACGA+GGG 0.651005 tig0024643:-2940 Msa1418780:CDS
GATCCTTGGACCGGTGACAG+GGG 0.654306 tig0024643:+4326 None:intergenic
CTTAGCGACGATGTGGTGTG+GGG 0.656713 tig0024643:+4503 None:intergenic
TTGATTATGAAACGCCTCCG+CGG 0.657077 tig0024643:-4024 Msa1418780:CDS
AGAGGGAAAAGTGACATGGA+AGG 0.667089 tig0024643:+4215 None:intergenic
GAAGGAAGAAAGTTGAGACA+TGG 0.667244 tig0024643:+4233 None:intergenic
CCTTTATTTCATAACCGCGG+AGG 0.676519 tig0024643:+4010 None:intergenic
ATACCTTTATTTCATAACCG+CGG 0.679434 tig0024643:+4007 None:intergenic
ACTGCATTCCAATCCTAGGG+AGG 0.691555 tig0024643:+4157 None:intergenic
TGTGCTCTTGATGCTACAGG+AGG 0.695186 tig0024643:-4612 Msa1418780:CDS
TGTACCAGTTATGTTCACAA+TGG 0.706662 tig0024643:+432 None:intergenic
GGTGCCCTAAATCTTATCGG+AGG 0.709526 tig0024643:-2837 Msa1418780:CDS
GTAGCGATAGGAGTGAGGTG+CGG 0.729995 tig0024643:-4933 Msa1418780:CDS
ATCCAAGTAAATTTGCAACG+TGG 0.745608 tig0024643:-4982 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAAAATAGAACAAAAT+GGG + tig0024643:3075-3094 None:intergenic 10.0%
!!! ATTTTGTTCTATTTTTAATA+GGG - tig0024643:3075-3094 Msa1418780:CDS 10.0%
!! TATCAAATACTATTATTTAA+TGG + tig0024643:4858-4877 None:intergenic 10.0%
!!! TATTTTATTGCAAAAACTTT+AGG - tig0024643:2093-2112 Msa1418780:CDS 15.0%
!!! TTATTTTTAGAGATTTTCAT+AGG - tig0024643:2206-2225 Msa1418780:intron 15.0%
!!! AATTTTGTATTACAATATTG+TGG + tig0024643:2394-2413 None:intergenic 15.0%
!! AAATAATTCAACAATATTTG+AGG + tig0024643:2704-2723 None:intergenic 15.0%
!! CTATTAAAAATAGAACAAAA+TGG + tig0024643:3076-3095 None:intergenic 15.0%
!!! CATTTTGTTCTATTTTTAAT+AGG - tig0024643:3074-3093 Msa1418780:CDS 15.0%
!!! CATTTTATATATTTGCATTT+TGG - tig0024643:3239-3258 Msa1418780:intron 15.0%
!!! TAAATCATTTTATCAAATAG+AGG - tig0024643:3515-3534 Msa1418780:intron 15.0%
!! AAACTCAAAAATTATATTGA+AGG - tig0024643:3986-4005 Msa1418780:intron 15.0%
!!! AATGGTTTTATAATTATTAC+TGG - tig0024643:4570-4589 Msa1418780:CDS 15.0%
!!! ATGGTTTTATAATTATTACT+GGG - tig0024643:4571-4590 Msa1418780:CDS 15.0%
!! TAACTTAGGATAATAAGAAT+TGG + tig0024643:1044-1063 None:intergenic 20.0%
!! AAGAAAGAAAAAAAATTCCA+CGG - tig0024643:1592-1611 Msa1418780:intron 20.0%
!!! TTTTCTTTTTCCATTATTTG+AGG + tig0024643:1815-1834 None:intergenic 20.0%
!! ATTATGTAGTTGAAATTGTT+TGG - tig0024643:1967-1986 Msa1418780:intron 20.0%
!!! AAAAACTTTAGGATGTATTT+GGG - tig0024643:2104-2123 Msa1418780:CDS 20.0%
!!! TTTATTATTTACATTTTGGC+TGG - tig0024643:2721-2740 Msa1418780:intron 20.0%
!!! TTATTATTTACATTTTGGCT+GGG - tig0024643:2722-2741 Msa1418780:intron 20.0%
!! TATTCCATCTAAATCATTTA+TGG - tig0024643:2794-2813 Msa1418780:CDS 20.0%
!! TATTCCATAAATGATTTAGA+TGG + tig0024643:2801-2820 None:intergenic 20.0%
!! AGAAACTATTAGTAAAGATT+TGG - tig0024643:3672-3691 Msa1418780:intron 20.0%
!! AGATTTGGAAATTAATTAGT+TGG - tig0024643:3687-3706 Msa1418780:intron 20.0%
!! TCAAAAATTATATTGAAGGA+GGG - tig0024643:3990-4009 Msa1418780:intron 20.0%
!!! GAACAATCTCTAAAAAAATA+CGG - tig0024643:4108-4127 Msa1418780:CDS 20.0%
!! AATAATAGTATTTGATACGT+TGG - tig0024643:4861-4880 Msa1418780:CDS 20.0%
!! ATAATAGTATTTGATACGTT+GGG - tig0024643:4862-4881 Msa1418780:CDS 20.0%
!!! AATTCGTTTTTGATCATTCT+TGG - tig0024643:990-1009 Msa1418780:intron 25.0%
!!! ATTCGTTTTTGATCATTCTT+GGG - tig0024643:991-1010 Msa1418780:intron 25.0%
! ATAAAAATGAGAGTAAGCAT+TGG + tig0024643:1017-1036 None:intergenic 25.0%
!!! AATGCTTACTCTCATTTTTA+TGG - tig0024643:1016-1035 Msa1418780:intron 25.0%
! CATCAAAATTAGTATAGTTG+CGG + tig0024643:1291-1310 None:intergenic 25.0%
!!! TAATTTTGATGACTTCTTGA+TGG - tig0024643:1300-1319 Msa1418780:intron 25.0%
! AGAAAGAAAAAAAATTCCAC+GGG - tig0024643:1593-1612 Msa1418780:intron 25.0%
! AAAGTCTAAACCTCAAATAA+TGG - tig0024643:1802-1821 Msa1418780:intron 25.0%
! ATATGAAAACACTGAAACAT+TGG + tig0024643:1949-1968 None:intergenic 25.0%
! ACTTCATTGTAATCTCTTAA+AGG + tig0024643:2074-2093 None:intergenic 25.0%
!!! CAAAAACTTTAGGATGTATT+TGG - tig0024643:2103-2122 Msa1418780:CDS 25.0%
! GATACAAAGTGAAAACAATT+TGG + tig0024643:2186-2205 None:intergenic 25.0%
!! TTAGAGATTTTCATAGGAAA+TGG - tig0024643:2212-2231 Msa1418780:intron 25.0%
! TCTATTTGCTTTCTAATTAC+TGG - tig0024643:2272-2291 Msa1418780:intron 25.0%
!!! TATTTCGTTTTTGTATTGGA+AGG - tig0024643:2297-2316 Msa1418780:intron 25.0%
! GTAGTGTCTAAATATTAGTA+TGG - tig0024643:2426-2445 Msa1418780:intron 25.0%
! AAAAATGGATAGTAAGTTTG+TGG + tig0024643:2632-2651 None:intergenic 25.0%
!!! TTTTGAAGCATGTTATTATC+AGG - tig0024643:2655-2674 Msa1418780:intron 25.0%
! ACTATAGCATTATTCTCTAA+TGG + tig0024643:2759-2778 None:intergenic 25.0%
!! ATGGAATAAACTTTTCAGTT+TGG - tig0024643:2813-2832 Msa1418780:CDS 25.0%
! TTAACTTATAGACGGTATTT+GGG - tig0024643:2955-2974 Msa1418780:intron 25.0%
! AATCTTCATCAATAAGGTAA+TGG + tig0024643:3382-3401 None:intergenic 25.0%
!! ACCTTATTGATGAAGATTTT+AGG - tig0024643:3384-3403 Msa1418780:intron 25.0%
! TCCTAAAATCTTCATCAATA+AGG + tig0024643:3388-3407 None:intergenic 25.0%
! TTTGTCTCTACAAAATCTAT+AGG + tig0024643:3630-3649 None:intergenic 25.0%
! TAATTAGTTGGATCGAAATA+TGG - tig0024643:3699-3718 Msa1418780:intron 25.0%
!!! TCTCTTCTTTTTTTTTGTGA+TGG - tig0024643:3769-3788 Msa1418780:intron 25.0%
!!! CTTTTTTTTTGTGATGGTAA+AGG - tig0024643:3775-3794 Msa1418780:intron 25.0%
! CTCAAAAATTATATTGAAGG+AGG - tig0024643:3989-4008 Msa1418780:intron 25.0%
!!! GTTGTTTTTGTTTGTGTTAA+AGG - tig0024643:4287-4306 Msa1418780:CDS 25.0%
!!! TTTTTGTTTGTGTTAAAGGT+GGG - tig0024643:4291-4310 Msa1418780:CDS 25.0%
! GAGAAGTTATAACTACATTA+AGG + tig0024643:4368-4387 None:intergenic 25.0%
! TAACTTCTCATCTAATCAAA+AGG - tig0024643:4379-4398 Msa1418780:CDS 25.0%
! AAAAGTTTGCATTCTTTCAA+TGG - tig0024643:4552-4571 Msa1418780:CDS 25.0%
!! TAGAAAGTATATACACACAT+TGG - tig0024643:4739-4758 Msa1418780:CDS 25.0%
! TTCATCCTTTATGACAAAAT+TGG - tig0024643:4893-4912 Msa1418780:CDS 25.0%
! TCAATGCTTCTTCATTGTTT+TGG - tig0024643:591-610 Msa1418780:three_prime_UTR 30.0%
! CAATGCTTCTTCATTGTTTT+GGG - tig0024643:592-611 Msa1418780:three_prime_UTR 30.0%
!! AATGCTTCTTCATTGTTTTG+GGG - tig0024643:593-612 Msa1418780:three_prime_UTR 30.0%
ATCAAAAACGAATTCACCAT+AGG + tig0024643:984-1003 None:intergenic 30.0%
AAAATTAGTATAGTTGCGGT+TGG + tig0024643:1287-1306 None:intergenic 30.0%
TGGACTTGAAGCATAATAAA+AGG - tig0024643:1320-1339 Msa1418780:intron 30.0%
! ATACCTTTATTTCATAACCG+CGG + tig0024643:1405-1424 None:intergenic 30.0%
GTAAACTTCTGTTGAACAAA+TGG - tig0024643:1483-1502 Msa1418780:intron 30.0%
CTATACAAGACATGACAAAT+TGG + tig0024643:1512-1531 None:intergenic 30.0%
TTTGTCATGTCTTGTATAGT+AGG - tig0024643:1513-1532 Msa1418780:intron 30.0%
! CTTCATAGTTCTATGTTTGT+CGG - tig0024643:1559-1578 Msa1418780:intron 30.0%
GAAAGAAAAAAAATTCCACG+GGG - tig0024643:1594-1613 Msa1418780:intron 30.0%
AGTTAGTTAAAGCCAAATGA+AGG - tig0024643:1699-1718 Msa1418780:intron 30.0%
GTTAGTTAAAGCCAAATGAA+GGG - tig0024643:1700-1719 Msa1418780:intron 30.0%
TCGTTCAGATGTTTAATGAT+TGG + tig0024643:1854-1873 None:intergenic 30.0%
!! GGCATATTTCGTTTTTGTAT+TGG - tig0024643:2293-2312 Msa1418780:intron 30.0%
CTAAATATTAGTATGGCTAC+TGG - tig0024643:2433-2452 Msa1418780:intron 30.0%
!!! AGGGAATTTTTTCATGAGAT+GGG - tig0024643:2488-2507 Msa1418780:intron 30.0%
CATGCTTCAAAATGCAAAAA+TGG + tig0024643:2647-2666 None:intergenic 30.0%
GTTAACTTATAGACGGTATT+TGG - tig0024643:2954-2973 Msa1418780:intron 30.0%
ATAGAACAAAATGGGAGATA+AGG + tig0024643:3067-3086 None:intergenic 30.0%
!!! AGGAGAAACATGCTATTTTT+TGG + tig0024643:3141-3160 None:intergenic 30.0%
TCAAAGGCCTATTTACTATT+AGG - tig0024643:3212-3231 Msa1418780:intron 30.0%
CAAAGGCCTATTTACTATTA+GGG - tig0024643:3213-3232 Msa1418780:intron 30.0%
ATGCTTCCCTAATAGTAAAT+AGG + tig0024643:3222-3241 None:intergenic 30.0%
AATCTTAAAACAGTAGAAGC+AGG - tig0024643:3299-3318 Msa1418780:intron 30.0%
AAAGTGAACTTAGAAAGACA+AGG + tig0024643:3479-3498 None:intergenic 30.0%
AGCGTAATTTGATCCATATA+CGG - tig0024643:3740-3759 Msa1418780:intron 30.0%
GAAGAGAAATATTCCGTATA+TGG + tig0024643:3756-3775 None:intergenic 30.0%
TTATGCTTACTTTGCAAGTT+TGG - tig0024643:3854-3873 Msa1418780:intron 30.0%
! ATAAACCCCATATTCAAGTT+GGG + tig0024643:3936-3955 None:intergenic 30.0%
AATAAACCCCATATTCAAGT+TGG + tig0024643:3937-3956 None:intergenic 30.0%
!! TTTGAGTTTCTCCATTTTGA+GGG + tig0024643:3975-3994 None:intergenic 30.0%
!!! TTTTGAGTTTCTCCATTTTG+AGG + tig0024643:3976-3995 None:intergenic 30.0%
TTAATCATTAAAGCCAAGCT+GGG - tig0024643:4241-4260 Msa1418780:CDS 30.0%
!! GTTTTTGTTTGTGTTAAAGG+TGG - tig0024643:4290-4309 Msa1418780:CDS 30.0%
GATAGTCATAACTAGGATAT+AGG + tig0024643:4336-4355 None:intergenic 30.0%
TAAGTTCTTAAGCCAACAAA+TGG + tig0024643:4479-4498 None:intergenic 30.0%
TGTGTGTATATACTTTCTAC+AGG + tig0024643:4738-4757 None:intergenic 30.0%
CTTTATGACAAAATTGGAGA+CGG - tig0024643:4899-4918 Msa1418780:CDS 30.0%
!!! ATTGTTTTGGGGATCTTCTA+AGG - tig0024643:604-623 Msa1418780:three_prime_UTR 35.0%
!! AGAAATGGATTGAACTTGTC+TGG + tig0024643:824-843 None:intergenic 35.0%
! AGAAAAGCATGCGATAGAAA+TGG + tig0024643:839-858 None:intergenic 35.0%
TCTTCTTCCGTTAAGGAAAA+GGG - tig0024643:878-897 Msa1418780:intron 35.0%
AACGAATTCACCATAGGAAT+GGG + tig0024643:978-997 None:intergenic 35.0%
AAACGAATTCACCATAGGAA+TGG + tig0024643:979-998 None:intergenic 35.0%
!! CTTCATTGTTTCTGCTATCA+AGG - tig0024643:1144-1163 Msa1418780:intron 35.0%
TCATGTCTTGTATAGTAGGA+GGG - tig0024643:1517-1536 Msa1418780:intron 35.0%
ACACAGCATGTTCTAATGAA+TGG - tig0024643:1654-1673 Msa1418780:intron 35.0%
GTAGATGCTAGAGTTTCAAA+AGG - tig0024643:1766-1785 Msa1418780:intron 35.0%
! TAGAGTTTCAAAAGGTGCAA+TGG - tig0024643:1774-1793 Msa1418780:intron 35.0%
ATGTAACACCAAACAATCAG+TGG - tig0024643:1888-1907 Msa1418780:intron 35.0%
TGTAACACCAAACAATCAGT+GGG - tig0024643:1889-1908 Msa1418780:intron 35.0%
! TTCTATTCCTAGAGAAGCAT+TGG + tig0024643:1922-1941 None:intergenic 35.0%
!! TTTAGGATGTATTTGGGTTG+AGG - tig0024643:2110-2129 Msa1418780:CDS 35.0%
AATGGTGAAACAAACCAAAC+AGG - tig0024643:2230-2249 Msa1418780:intron 35.0%
TAGAATGCATCATAACCCAA+GGG + tig0024643:2256-2275 None:intergenic 35.0%
ATAGAATGCATCATAACCCA+AGG + tig0024643:2257-2276 None:intergenic 35.0%
! ATTCCTTCTACACCTTTTAC+AGG - tig0024643:2332-2351 Msa1418780:intron 35.0%
ATCAGTTGTGTTCCTGTAAA+AGG + tig0024643:2347-2366 None:intergenic 35.0%
!!! GAGGGAATTTTTTCATGAGA+TGG - tig0024643:2487-2506 Msa1418780:intron 35.0%
TCATGAGATGGGATCAAAAA+TGG - tig0024643:2499-2518 Msa1418780:intron 35.0%
CATGAGATGGGATCAAAAAT+GGG - tig0024643:2500-2519 Msa1418780:intron 35.0%
TATTGTTGCTGAAGACAATG+AGG - tig0024643:2538-2557 Msa1418780:intron 35.0%
ATCTCCTCCGATAAGATTTA+GGG + tig0024643:2579-2598 None:intergenic 35.0%
TATCTCCTCCGATAAGATTT+AGG + tig0024643:2580-2599 None:intergenic 35.0%
GTTATTATCAGGTTCACACT+TGG - tig0024643:2666-2685 Msa1418780:intron 35.0%
TGTGGGTGTTAACTTATAGA+CGG - tig0024643:2947-2966 Msa1418780:intron 35.0%
TGGGAGATAAGGTAAAAATG+TGG + tig0024643:3056-3075 None:intergenic 35.0%
! TTTAGTTCGTGAATCTTCTC+AGG - tig0024643:3424-3443 Msa1418780:intron 35.0%
AAAGAGAGTAGATCATCAGA+TGG + tig0024643:3606-3625 None:intergenic 35.0%
GTAAAGGCTTACTTTGCAAT+GGG - tig0024643:3791-3810 Msa1418780:intron 35.0%
ATAGTCTCCCAACTTGAATA+TGG - tig0024643:3926-3945 Msa1418780:intron 35.0%
TAGTCTCCCAACTTGAATAT+GGG - tig0024643:3927-3946 Msa1418780:intron 35.0%
AACACAAAATCCCCTCAAAA+TGG - tig0024643:3961-3980 Msa1418780:intron 35.0%
! TTGAGTTTCTCCATTTTGAG+GGG + tig0024643:3974-3993 None:intergenic 35.0%
GATTAAGGAGTAATCCTATC+AGG + tig0024643:4227-4246 None:intergenic 35.0%
!! CAGCTTGGCTTTAATGATTA+AGG + tig0024643:4242-4261 None:intergenic 35.0%
CTTAATCATTAAAGCCAAGC+TGG - tig0024643:4240-4259 Msa1418780:CDS 35.0%
CAAACAAAAACAACACATCC+TGG + tig0024643:4281-4300 None:intergenic 35.0%
ATCAGTCGATAGTCATAACT+AGG + tig0024643:4343-4362 None:intergenic 35.0%
! TTAAGCACAGTAGTGCATTT+TGG - tig0024643:4518-4537 Msa1418780:CDS 35.0%
TGTCACATTATCAAGTGCTT+TGG + tig0024643:4647-4666 None:intergenic 35.0%
AAGTATATACACACATTGGC+AGG - tig0024643:4743-4762 Msa1418780:CDS 35.0%
AGTATATACACACATTGGCA+GGG - tig0024643:4744-4763 Msa1418780:CDS 35.0%
TGTATGTACAGTTGAATCAG+TGG - tig0024643:4832-4851 Msa1418780:CDS 35.0%
! CGTCTCCAATTTTGTCATAA+AGG + tig0024643:4901-4920 None:intergenic 35.0%
GAAGATTTGCGATGATGAGA+CGG + tig0024643:518-537 None:intergenic 40.0%
TTCTTCAGATTCTGTTGTGC+TGG + tig0024643:705-724 None:intergenic 40.0%
AGATATTCCATCCACCCAAT+GGG - tig0024643:769-788 Msa1418780:intron 40.0%
ACTATCCTCTTCTTCCGTTA+AGG - tig0024643:871-890 Msa1418780:intron 40.0%
! CTTTTCCTTAACGGAAGAAG+AGG + tig0024643:879-898 None:intergenic 40.0%
CTCTTCTTCCGTTAAGGAAA+AGG - tig0024643:877-896 Msa1418780:intron 40.0%
TATCTCAAGACCCATTCCTA+TGG - tig0024643:965-984 Msa1418780:intron 40.0%
GTGTTACGAAGTAAGATCCT+TGG + tig0024643:1100-1119 None:intergenic 40.0%
GAAGGAAGAAAGTTGAGACA+TGG + tig0024643:1179-1198 None:intergenic 40.0%
TTTCAGAGGGAAAAGTGACA+TGG + tig0024643:1201-1220 None:intergenic 40.0%
TGGCACAAATTCACTCAACA+AGG - tig0024643:1226-1245 Msa1418780:intron 40.0%
GATACTGCATTCCAATCCTA+GGG + tig0024643:1258-1277 None:intergenic 40.0%
TGATACTGCATTCCAATCCT+AGG + tig0024643:1259-1278 None:intergenic 40.0%
GTCATGTCTTGTATAGTAGG+AGG - tig0024643:1516-1535 Msa1418780:intron 40.0%
AGTTCTATGTTTGTCGGTGT+TGG - tig0024643:1565-1584 Msa1418780:intron 40.0%
GAAAAAAAATTCCACGGGGT+TGG - tig0024643:1598-1617 Msa1418780:intron 40.0%
ATTAGAACATGCTGTGTCAG+TGG + tig0024643:1651-1670 None:intergenic 40.0%
GCTGTAATTCACCCTTCATT+TGG + tig0024643:1714-1733 None:intergenic 40.0%
CTCTGCATATGGGTCAAAAT+TGG + tig0024643:1747-1766 None:intergenic 40.0%
CTAGCATCTACTCTGCATAT+GGG + tig0024643:1757-1776 None:intergenic 40.0%
TCTAGCATCTACTCTGCATA+TGG + tig0024643:1758-1777 None:intergenic 40.0%
GTAACACCAAACAATCAGTG+GGG - tig0024643:1890-1909 Msa1418780:intron 40.0%
! TAACTTCCCCACTGATTGTT+TGG + tig0024643:1899-1918 None:intergenic 40.0%
GAAGTTACCAATGCTTCTCT+AGG - tig0024643:1912-1931 Msa1418780:intron 40.0%
AAAGTGAACTTCTGTCAGAG+AGG + tig0024643:2047-2066 None:intergenic 40.0%
! CTCTGACAGAAGTTCACTTT+TGG - tig0024643:2047-2066 Msa1418780:CDS 40.0%
! GTTCCTGTAAAAGGTGTAGA+AGG + tig0024643:2338-2357 None:intergenic 40.0%
AAAAATTCCCTCGTCAGGAA+AGG + tig0024643:2479-2498 None:intergenic 40.0%
CATGAAAAAATTCCCTCGTC+AGG + tig0024643:2484-2503 None:intergenic 40.0%
ATCGGAGGAGATACTTTGTT+TGG - tig0024643:2587-2606 Msa1418780:intron 40.0%
! TCGGAGGAGATACTTTGTTT+GGG - tig0024643:2588-2607 Msa1418780:intron 40.0%
!!! TTTACATTTTGGCTGGGCTT+TGG - tig0024643:2728-2747 Msa1418780:intron 40.0%
CTAAATTAGCCCACCCAAAT+CGG - tig0024643:2860-2879 Msa1418780:CDS 40.0%
! TATACTTTAGTTCCGCCACT+TGG + tig0024643:3033-3052 None:intergenic 40.0%
! ACTGCAGTGCGACTTTTAAA+AGG + tig0024643:3161-3180 None:intergenic 40.0%
!!! GCATTTTGGTTTGACATCAC+AGG - tig0024643:3253-3272 Msa1418780:intron 40.0%
TTCGTGAATCTTCTCAGGTA+TGG - tig0024643:3429-3448 Msa1418780:intron 40.0%
GGTAAAGGCTTACTTTGCAA+TGG - tig0024643:3790-3809 Msa1418780:intron 40.0%
GCTTACTTTGCAATGGGAAA+AGG - tig0024643:3797-3816 Msa1418780:intron 40.0%
!! CTTGCTTGTTGTTGTTGTGA+TGG - tig0024643:3820-3839 Msa1418780:intron 40.0%
TGCTTACTTTGCAAGTTTGG+AGG - tig0024643:3857-3876 Msa1418780:intron 40.0%
GCTTACTTTGCAAGTTTGGA+GGG - tig0024643:3858-3877 Msa1418780:intron 40.0%
CTTACTTTGCAAGTTTGGAG+GGG - tig0024643:3859-3878 Msa1418780:intron 40.0%
AGTCTCCCAACTTGAATATG+GGG - tig0024643:3928-3947 Msa1418780:intron 40.0%
TCAGGAGACAAAACCAACTA+CGG + tig0024643:4209-4228 None:intergenic 40.0%
!!! AGTTGGTTTTGTCTCCTGAT+AGG - tig0024643:4210-4229 Msa1418780:CDS 40.0%
TGCAAAGTGAAGGATTGTTC+TGG + tig0024643:4425-4444 None:intergenic 40.0%
CTTGCCTTCAATTCTAATCG+AGG + tig0024643:4449-4468 None:intergenic 40.0%
CTCGATTAGAATTGAAGGCA+AGG - tig0024643:4447-4466 Msa1418780:CDS 40.0%
GCAAGGATGTAACCATTTGT+TGG - tig0024643:4464-4483 Msa1418780:CDS 40.0%
!! ACAGTAGTTGGTAGCATGAA+TGG + tig0024643:4620-4639 None:intergenic 40.0%
!! TGCTTTGGAATCACAGTAGT+TGG + tig0024643:4632-4651 None:intergenic 40.0%
! TGTGACATTTTTGCCTGTAC+AGG - tig0024643:4660-4679 Msa1418780:CDS 40.0%
ATAACAAGCTTCACCTGTAC+AGG + tig0024643:4676-4695 None:intergenic 40.0%
ATGAAACTCTTGCGTGATTC+TGG - tig0024643:4694-4713 Msa1418780:CDS 40.0%
GATGCCATTGTGAACATAAC+TGG - tig0024643:4973-4992 Msa1418780:five_prime_UTR 40.0%
CAGATATTCCATCCACCCAA+TGG - tig0024643:768-787 Msa1418780:intron 45.0%
! AAGAGCACATGCATCCCATT+GGG + tig0024643:786-805 None:intergenic 45.0%
CTTCCGTTAAGGAAAAGGGA+TGG - tig0024643:882-901 Msa1418780:intron 45.0%
! GGTCCATCCCTTTTCCTTAA+CGG + tig0024643:888-907 None:intergenic 45.0%
GAATATCCTTAGCGACGATG+TGG + tig0024643:916-935 None:intergenic 45.0%
GAATGGGTCTTGAGATAGAG+AGG + tig0024643:962-981 None:intergenic 45.0%
GGGACACAGGATTGTAACTT+AGG + tig0024643:1058-1077 None:intergenic 45.0%
ACGAAGTAAGATCCTTGGAC+CGG + tig0024643:1095-1114 None:intergenic 45.0%
AGAGGGAAAAGTGACATGGA+AGG + tig0024643:1197-1216 None:intergenic 45.0%
!! CTTTTCCCTCTGAAAACGAG+TGG - tig0024643:1206-1225 Msa1418780:intron 45.0%
!! TTGTGCCACTCGTTTTCAGA+GGG + tig0024643:1214-1233 None:intergenic 45.0%
!! TTTGTGCCACTCGTTTTCAG+AGG + tig0024643:1215-1234 None:intergenic 45.0%
GGATTGGAATGCAGTATCAC+TGG - tig0024643:1260-1279 Msa1418780:intron 45.0%
TTGATTATGAAACGCCTCCG+CGG - tig0024643:1385-1404 Msa1418780:intron 45.0%
! CCTTTATTTCATAACCGCGG+AGG + tig0024643:1402-1421 None:intergenic 45.0%
CCTCCGCGGTTATGAAATAA+AGG - tig0024643:1399-1418 Msa1418780:intron 45.0%
TTCTGATATATCCAACCCCG+TGG + tig0024643:1612-1631 None:intergenic 45.0%
! TGTCAGTGGAAAAAGTGCAC+TGG + tig0024643:1637-1656 None:intergenic 45.0%
CTGTCAGAGAGGTAAACATC+AGG + tig0024643:2036-2055 None:intergenic 45.0%
AAACAAACCAAACAGGCCCT+TGG - tig0024643:2237-2256 Msa1418780:intron 45.0%
AACAAACCAAACAGGCCCTT+GGG - tig0024643:2238-2257 Msa1418780:intron 45.0%
TGTATTGGAAGGCAAAGCAC+TGG - tig0024643:2308-2327 Msa1418780:intron 45.0%
! GTATTGGAAGGCAAAGCACT+GGG - tig0024643:2309-2328 Msa1418780:intron 45.0%
!! GCTACTGGTCTTTGACAGAT+GGG - tig0024643:2448-2467 Msa1418780:intron 45.0%
!! CTACTGGTCTTTGACAGATG+GGG - tig0024643:2449-2468 Msa1418780:intron 45.0%
GACAATGAGGAACTAGTAGC+AGG - tig0024643:2551-2570 Msa1418780:intron 45.0%
GCAGGTGCCCTAAATCTTAT+CGG - tig0024643:2569-2588 Msa1418780:intron 45.0%
! ATACTTTGTTTGGGCGCCTA+TGG - tig0024643:2597-2616 Msa1418780:intron 45.0%
! TACTTTGTTTGGGCGCCTAT+GGG - tig0024643:2598-2617 Msa1418780:intron 45.0%
GAATCGAACCTGAGACCTTA+AGG - tig0024643:2892-2911 Msa1418780:CDS 45.0%
CATCAAAGCCACACTGGAAA+AGG + tig0024643:2929-2948 None:intergenic 45.0%
!! TTTCCAGTGTGGCTTTGATG+TGG - tig0024643:2929-2948 Msa1418780:CDS 45.0%
!! TTCCAGTGTGGCTTTGATGT+GGG - tig0024643:2930-2949 Msa1418780:CDS 45.0%
TTCTCTTCAGTTCCACCAAG+TGG - tig0024643:3015-3034 Msa1418780:intron 45.0%
GACCCTGTGATTTCTGTCAA+AGG - tig0024643:3196-3215 Msa1418780:intron 45.0%
GGCCTTTGACAGAAATCACA+GGG + tig0024643:3201-3220 None:intergenic 45.0%
AGGCCTTTGACAGAAATCAC+AGG + tig0024643:3202-3221 None:intergenic 45.0%
GGTGAACATAAGATTGAGCG+TGG - tig0024643:3329-3348 Msa1418780:intron 45.0%
TGGCAGCTATATGTTGTCAC+TGG + tig0024643:3362-3381 None:intergenic 45.0%
TCTAGATCTTCCTCTGCCTT+TGG - tig0024643:3565-3584 Msa1418780:intron 45.0%
GAGGATAGTCAGATCACCAA+AGG + tig0024643:3584-3603 None:intergenic 45.0%
GAGAGTAGATCATCAGATGG+AGG + tig0024643:3603-3622 None:intergenic 45.0%
TGGGTATGAGGAAGGAAGTA+AGG - tig0024643:3888-3907 Msa1418780:intron 45.0%
GGGTATGAGGAAGGAAGTAA+GGG - tig0024643:3889-3908 Msa1418780:intron 45.0%
GTTTGTGAGTTTGGAGGGTA+GGG + tig0024643:4182-4201 None:intergenic 45.0%
CTACCCTCCAAACTCACAAA+CGG - tig0024643:4181-4200 Msa1418780:CDS 45.0%
TAATCGAGGCTGCAAAGTGA+AGG + tig0024643:4435-4454 None:intergenic 45.0%
GCAGCCTCGATTAGAATTGA+AGG - tig0024643:4442-4461 Msa1418780:CDS 45.0%
GATTCTGGTCCTTTCAAGGA+AGG - tig0024643:4709-4728 Msa1418780:CDS 45.0%
TACAGGACACCTTCCTTGAA+AGG + tig0024643:4721-4740 None:intergenic 45.0%
!!! ATTATTTATTATTTACATTT+TGG - tig0024643:2717-2736 Msa1418780:intron 5.0%
! CAAGAGCACATGCATCCCAT+TGG + tig0024643:787-806 None:intergenic 50.0%
GCATGTGCTCTTGATGCTAC+AGG - tig0024643:794-813 Msa1418780:intron 50.0%
TGTGCTCTTGATGCTACAGG+AGG - tig0024643:797-816 Msa1418780:intron 50.0%
CTCAACAAGGTTTCCTCCCT+AGG - tig0024643:1239-1258 Msa1418780:intron 50.0%
CAAGGTTTCCTCCCTAGGAT+TGG - tig0024643:1244-1263 Msa1418780:intron 50.0%
ACTGCATTCCAATCCTAGGG+AGG + tig0024643:1255-1274 None:intergenic 50.0%
! GATACGTCAAGAGCGCAAGA+AGG - tig0024643:1348-1367 Msa1418780:intron 50.0%
TCATAACCCAAGGGCCTGTT+TGG + tig0024643:2247-2266 None:intergenic 50.0%
!! GGCTACTGGTCTTTGACAGA+TGG - tig0024643:2447-2466 Msa1418780:intron 50.0%
GGTGCCCTAAATCTTATCGG+AGG - tig0024643:2572-2591 Msa1418780:intron 50.0%
! ACTTTGTTTGGGCGCCTATG+GGG - tig0024643:2599-2618 Msa1418780:intron 50.0%
TTTGTGGATGACACCCCCAT+AGG + tig0024643:2616-2635 None:intergenic 50.0%
TCGAACCTGAGACCTTAAGG+AGG - tig0024643:2895-2914 Msa1418780:CDS 50.0%
! AAGGAGTGTGCTCCTCCTTA+AGG + tig0024643:2910-2929 None:intergenic 50.0%
! AGCACACTCCTTTTCCAGTG+TGG - tig0024643:2918-2937 Msa1418780:CDS 50.0%
TCTTCAGTTCCACCAAGTGG+CGG - tig0024643:3018-3037 Msa1418780:intron 50.0%
! ACTTTAGTTCCGCCACTTGG+TGG + tig0024643:3030-3049 None:intergenic 50.0%
GACAGAAATCACAGGGTCAC+AGG + tig0024643:3194-3213 None:intergenic 50.0%
AACAGTAGAAGCAGGAGCTC+AGG - tig0024643:3307-3326 Msa1418780:intron 50.0%
ACAGTAGAAGCAGGAGCTCA+GGG - tig0024643:3308-3327 Msa1418780:intron 50.0%
TTCTCAGGTATGGTGCAGCA+GGG - tig0024643:3439-3458 Msa1418780:intron 50.0%
AGTCAGATCACCAAAGGCAG+AGG + tig0024643:3578-3597 None:intergenic 50.0%
ACTTTGCAAGTTTGGAGGGG+AGG - tig0024643:3862-3881 Msa1418780:intron 50.0%
AAGTTTGGAGGGGAGGCTTT+GGG - tig0024643:3869-3888 Msa1418780:intron 50.0%
CGTTTGTGAGTTTGGAGGGT+AGG + tig0024643:4183-4202 None:intergenic 50.0%
GCTCCGTTTGTGAGTTTGGA+GGG + tig0024643:4187-4206 None:intergenic 50.0%
TACGGCTCCGTTTGTGAGTT+TGG + tig0024643:4191-4210 None:intergenic 50.0%
ACTCACAACAGTTCCCAGCT+TGG + tig0024643:4257-4276 None:intergenic 50.0%
TGGGAACTGTTGTGAGTACC+AGG - tig0024643:4260-4279 Msa1418780:CDS 50.0%
GCGTGATTCTGGTCCTTTCA+AGG - tig0024643:4705-4724 Msa1418780:CDS 50.0%
GTGATGGCAGCAGTAGCGAT+AGG - tig0024643:464-483 Msa1418780:three_prime_UTR 55.0%
CAGCAGTAGCGATAGGAGTG+AGG - tig0024643:471-490 Msa1418780:three_prime_UTR 55.0%
GTAGCGATAGGAGTGAGGTG+CGG - tig0024643:476-495 Msa1418780:three_prime_UTR 55.0%
CATGCATCCCATTGGGTGGA+TGG + tig0024643:779-798 None:intergenic 55.0%
AGCACATGCATCCCATTGGG+TGG + tig0024643:783-802 None:intergenic 55.0%
CTTAGCGACGATGTGGTGTG+GGG + tig0024643:909-928 None:intergenic 55.0%
CCTTAGCGACGATGTGGTGT+GGG + tig0024643:910-929 None:intergenic 55.0%
TCCTTAGCGACGATGTGGTG+TGG + tig0024643:911-930 None:intergenic 55.0%
AGATCCTTGGACCGGTGACA+GGG + tig0024643:1087-1106 None:intergenic 55.0%
AAGATCCTTGGACCGGTGAC+AGG + tig0024643:1088-1107 None:intergenic 55.0%
GGGTACTCCTTTCCTGACGA+GGG - tig0024643:2469-2488 Msa1418780:intron 55.0%
! CTTTGTTTGGGCGCCTATGG+GGG - tig0024643:2600-2619 Msa1418780:intron 55.0%
TCTCAGGTTCGATTCTCCCC+GGG + tig0024643:2887-2906 None:intergenic 55.0%
GTCTCAGGTTCGATTCTCCC+CGG + tig0024643:2888-2907 None:intergenic 55.0%
GTGCTCCTCCTTAAGGTCTC+AGG + tig0024643:2903-2922 None:intergenic 55.0%
CACCCACATCAAAGCCACAC+TGG + tig0024643:2935-2954 None:intergenic 55.0%
CTTCTCAGGTATGGTGCAGC+AGG - tig0024643:3438-3457 Msa1418780:intron 55.0%
CAAGTTTGGAGGGGAGGCTT+TGG - tig0024643:3868-3887 Msa1418780:intron 55.0%
!! GGAGGCTTTGGGTATGAGGA+AGG - tig0024643:3880-3899 Msa1418780:intron 55.0%
! CTTTGGGGGGAAGAGAGTAG+GGG + tig0024643:4155-4174 None:intergenic 55.0%
!! GCTTTGGGGGGAAGAGAGTA+GGG + tig0024643:4156-4175 None:intergenic 55.0%
GTGAGTTTGGAGGGTAGGGA+GGG + tig0024643:4178-4197 None:intergenic 55.0%
TGTGAGTTTGGAGGGTAGGG+AGG + tig0024643:4179-4198 None:intergenic 55.0%
GGCTCCGTTTGTGAGTTTGG+AGG + tig0024643:4188-4207 None:intergenic 55.0%
CTCACAAACGGAGCCGTAGT+TGG - tig0024643:4193-4212 Msa1418780:CDS 55.0%
TTGCAACGTGGCGAGGAGTG+AGG - tig0024643:439-458 Msa1418780:three_prime_UTR 60.0%
TGCAACGTGGCGAGGAGTGA+GGG - tig0024643:440-459 Msa1418780:three_prime_UTR 60.0%
CCCACACCACATCGTCGCTA+AGG - tig0024643:907-926 Msa1418780:intron 60.0%
GATCCTTGGACCGGTGACAG+GGG + tig0024643:1086-1105 None:intergenic 60.0%
! GGGGTACTCCTTTCCTGACG+AGG - tig0024643:2468-2487 Msa1418780:intron 60.0%
! ATTCTCCCCGGGGCCGATTT+GGG + tig0024643:2876-2895 None:intergenic 60.0%
CTCAGGTTCGATTCTCCCCG+GGG + tig0024643:2886-2905 None:intergenic 60.0%
!! GAGGGGAGGCTTTGGGTATG+AGG - tig0024643:3876-3895 Msa1418780:intron 60.0%
!! GGCTTTGGGGGGAAGAGAGT+AGG + tig0024643:4157-4176 None:intergenic 60.0%
TGGAGGGTAGGGAGGGCTTT+GGG + tig0024643:4171-4190 None:intergenic 60.0%
TTGGAGGGTAGGGAGGGCTT+TGG + tig0024643:4172-4191 None:intergenic 60.0%
GCAACGTGGCGAGGAGTGAG+GGG - tig0024643:441-460 Msa1418780:three_prime_UTR 65.0%
CAACGTGGCGAGGAGTGAGG+GGG - tig0024643:442-461 Msa1418780:three_prime_UTR 65.0%
GACAGGGGTGAAGGGGACAC+AGG + tig0024643:1071-1090 None:intergenic 65.0%
GTCCCCTTCACCCCTGTCAC+CGG - tig0024643:1073-1092 Msa1418780:intron 65.0%
GACCGGTGACAGGGGTGAAG+GGG + tig0024643:1078-1097 None:intergenic 65.0%
GGACCGGTGACAGGGGTGAA+GGG + tig0024643:1079-1098 None:intergenic 65.0%
TGGACCGGTGACAGGGGTGA+AGG + tig0024643:1080-1099 None:intergenic 65.0%
TCACCCCTGTCACCGGTCCA+AGG - tig0024643:1080-1099 Msa1418780:intron 65.0%
TAGCCCACCCAAATCGGCCC+CGG - tig0024643:2866-2885 Msa1418780:CDS 65.0%
GATTCTCCCCGGGGCCGATT+TGG + tig0024643:2877-2896 None:intergenic 65.0%
!! AGGGTAGGGAGGGCTTTGGG+GGG + tig0024643:4168-4187 None:intergenic 65.0%
! GAGGGTAGGGAGGGCTTTGG+GGG + tig0024643:4169-4188 None:intergenic 65.0%
GGAGGGTAGGGAGGGCTTTG+GGG + tig0024643:4170-4189 None:intergenic 65.0%
GGCGAGGAGTGAGGGGGTGA+TGG - tig0024643:448-467 Msa1418780:three_prime_UTR 70.0%
AGCCCACCCAAATCGGCCCC+GGG - tig0024643:2867-2886 Msa1418780:CDS 70.0%
!! TCCCCGGGGCCGATTTGGGT+GGG + tig0024643:2872-2891 None:intergenic 70.0%
GCCCACCCAAATCGGCCCCG+GGG - tig0024643:2868-2887 Msa1418780:CDS 75.0%
!! CTCCCCGGGGCCGATTTGGG+TGG + tig0024643:2873-2892 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
tig0024643 gene 435 4996 435 ID=Msa1418780;Name=Msa1418780
tig0024643 mRNA 435 4996 435 ID=Msa1418780-mRNA-1;Parent=Msa1418780;Name=Msa1418780-mRNA-1;_AED=0.08;_eAED=0.08;_QI=32|1|1|1|1|1|5|255|482
tig0024643 exon 435 749 435 ID=Msa1418780-mRNA-1:exon:550;Parent=Msa1418780-mRNA-1
tig0024643 exon 1986 2156 1986 ID=Msa1418780-mRNA-1:exon:549;Parent=Msa1418780-mRNA-1
tig0024643 exon 2755 2965 2755 ID=Msa1418780-mRNA-1:exon:548;Parent=Msa1418780-mRNA-1
tig0024643 exon 3060 3112 3060 ID=Msa1418780-mRNA-1:exon:547;Parent=Msa1418780-mRNA-1
tig0024643 exon 4011 4996 4011 ID=Msa1418780-mRNA-1:exon:546;Parent=Msa1418780-mRNA-1
tig0024643 five_prime_UTR 4965 4996 4965 ID=Msa1418780-mRNA-1:five_prime_utr;Parent=Msa1418780-mRNA-1
tig0024643 CDS 4011 4964 4011 ID=Msa1418780-mRNA-1:cds;Parent=Msa1418780-mRNA-1
tig0024643 CDS 3060 3112 3060 ID=Msa1418780-mRNA-1:cds;Parent=Msa1418780-mRNA-1
tig0024643 CDS 2755 2965 2755 ID=Msa1418780-mRNA-1:cds;Parent=Msa1418780-mRNA-1
tig0024643 CDS 1986 2156 1986 ID=Msa1418780-mRNA-1:cds;Parent=Msa1418780-mRNA-1
tig0024643 CDS 690 749 690 ID=Msa1418780-mRNA-1:cds;Parent=Msa1418780-mRNA-1
tig0024643 three_prime_UTR 435 689 435 ID=Msa1418780-mRNA-1:three_prime_utr;Parent=Msa1418780-mRNA-1
Gene Sequence

>Msa1418780

ATGGCAGCAGTAGCGATAGGAGTGAGGTGCGGCTGCTCATTGTCGTTTCCGTCTCATCATCGCAAATCTTCTTCTTCTTCTTCTTCTTCTGATTATTACTATTATTACAGAAGAAGAAGTAGAATCAATGCTTCTTCATTGTTTTGGGGATCTTCTAAGGACAAGAACAAACATAACAACATTTCTTCTTCTTCTTCTTCTTCTTCGCATCAGCAACAATTCAGCTTCAATGTTACCAGCACAACAGAATCTGAAGAAGAAAAAGATAAGATTATCACTGTTTCTTTTGTATCTTCAATTTCAGATATTCCATCCACCCAATGGGATGCATGTGCTCTTGATGCTACAGGAGGACCAGACAAGTTCAATCCATTTCTATCGCATGCTTTTCTATCATCTTTAGAACTATCCTCTTCTTCCGTTAAGGAAAAGGGATGGACCCCACACCACATCGTCGCTAAGGATATTCATAATCATATTCTCGCTGTTGTTCCTCTCTATCTCAAGACCCATTCCTATGGTGAATTCGTTTTTGATCATTCTTGGGCCAATGCTTACTCTCATTTTTATGGTTCCAATTCTTATTATCCTAAGTTACAATCCTGTGTCCCCTTCACCCCTGTCACCGGTCCAAGGATCTTACTTCGTAACACTTCTTTCAAACATCATGTTTTTGACTTCATTGTTTCTGCTATCAAGGATCTCACTGCCATGTCTCAACTTTCTTCCTTCCATGTCACTTTTCCCTCTGAAAACGAGTGGCACAAATTCACTCAACAAGGTTTCCTCCCTAGGATTGGAATGCAGTATCACTGGACCAACCGCAACTATACTAATTTTGATGACTTCTTGATGGACTTGAAGCATAATAAAAGGAAAAAGATACGTCAAGAGCGCAAGAAGGTTGCAGCTCAGAACTTGATTATGAAACGCCTCCGCGGTTATGAAATAAAGGCAAAGCACTGGGATTCCTTCTACACCTTTTACAGGAACACAACTGATAACAAATGGGGTACTCCTTTCCTGACGAGGGAATTTTTTCATGAGATGGGATCAAAAATGGGAGATCAAGTACTACTTATTGTTGCTGAAGACAATGAGGAACTAGTAGCAGGTGCCCTAAATCTTATCGGAGGAGATACTTTGTTTGGGCGCCTATGGGGGTGTCATCCACAAACTTACTATCCATTTTTGCATTTTGAAGCATGTTATTATCAGGCAATTGAAGCAGCGATTGAACTCAATCTTAAAACAGTAGAAGCAGGAGCTCAGGGTGAACATAAGATTGAGCGTGGATATCTTCCAGTGACAACATATAGCTGCCATTACCTTATTGATGAAGATTTTAGGAAAGCTATAGAAGATTTTTTAGTTCGTGAATCTTCTCAGGTGAAGCTTGTTATGAAACTCTTGCGTGATTCTGGTCCTTTCAAGGAAGGTGTCCTGTAG

Protein sequence

>Msa1418780

MAAVAIGVRCGCSLSFPSHHRKSSSSSSSSDYYYYYRRRSRINASSLFWGSSKDKNKHNNISSSSSSSSHQQQFSFNVTSTTESEEEKDKIITVSFVSSISDIPSTQWDACALDATGGPDKFNPFLSHAFLSSLELSSSSVKEKGWTPHHIVAKDIHNHILAVVPLYLKTHSYGEFVFDHSWANAYSHFYGSNSYYPKLQSCVPFTPVTGPRILLRNTSFKHHVFDFIVSAIKDLTAMSQLSSFHVTFPSENEWHKFTQQGFLPRIGMQYHWTNRNYTNFDDFLMDLKHNKRKKIRQERKKVAAQNLIMKRLRGYEIKAKHWDSFYTFYRNTTDNKWGTPFLTREFFHEMGSKMGDQVLLIVAEDNEELVAGALNLIGGDTLFGRLWGCHPQTYYPFLHFEACYYQAIEAAIELNLKTVEAGAQGEHKIERGYLPVTTYSCHYLIDEDFRKAIEDFLVRESSQVKLVMKLLRDSGPFKEGVL*