Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017900 | sp|O48651|SQE1_PANGI | 76.245 | 522 | 118 | 2 | 62 | 583 | 24 | 539 | 0.0 | 823 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017900 | Q2HY08 | 99.618 | 524 | 2 | 0 | 62 | 585 | 1 | 524 | 0.0 | 1066 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0017900 | 0.802712 | 4.924834e-49 | -8.615850e-47 |
| Msa0017900 | Msa0049400 | 0.800761 | 1.238144e-48 | -8.615850e-47 |
| Msa0017900 | Msa0098140 | 0.986399 | 1.168716e-166 | -8.615850e-47 |
| Msa0017900 | Msa0178990 | -0.803283 | 3.753647e-49 | -8.615850e-47 |
| Msa0017900 | Msa0196130 | 0.832845 | 7.492331e-56 | -8.615850e-47 |
| Msa0017900 | Msa0200950 | 0.808351 | 3.232350e-50 | -8.615850e-47 |
| Msa0017900 | Msa0358170 | -0.830346 | 3.092613e-55 | -8.615850e-47 |
| Msa0017900 | Msa0378080 | -0.802115 | 6.537085e-49 | -8.615850e-47 |
| Msa0017900 | Msa0380040 | -0.815559 | 8.689479e-52 | -8.615850e-47 |
| Msa0017900 | Msa0380890 | -0.801937 | 7.114563e-49 | -8.615850e-47 |
| Msa0017900 | Msa0412970 | -0.801473 | 8.857281e-49 | -8.615850e-47 |
| Msa0017900 | Msa0421780 | 0.810508 | 1.112999e-50 | -8.615850e-47 |
| Msa0017900 | Msa0429290 | -0.801343 | 9.415038e-49 | -8.615850e-47 |
| Msa0017900 | Msa0430790 | -0.801303 | 9.595635e-49 | -8.615850e-47 |
| Msa0017900 | Msa0475580 | -0.809239 | 2.087717e-50 | -8.615850e-47 |
| Msa0017900 | Msa0518040 | -0.805414 | 1.350498e-49 | -8.615850e-47 |
| Msa0017900 | Msa0519220 | -0.809603 | 1.744054e-50 | -8.615850e-47 |
| Msa0017900 | Msa0547140 | -0.830086 | 3.579939e-55 | -8.615850e-47 |
| Msa0017900 | Msa0601850 | -0.813162 | 2.942621e-51 | -8.615850e-47 |
| Msa0017900 | Msa0716840 | -0.819092 | 1.392702e-52 | -8.615850e-47 |
| Msa0017900 | Msa0792790 | 0.802008 | 6.876942e-49 | -8.615850e-47 |
| Msa0017900 | Msa0804120 | -0.806493 | 8.010497e-50 | -8.615850e-47 |
| Msa0017900 | Msa0824680 | -0.828393 | 9.217033e-55 | -8.615850e-47 |
| Msa0017900 | Msa0842210 | -0.834423 | 3.023411e-56 | -8.615850e-47 |
| Msa0017900 | Msa1111630 | -0.802261 | 6.099912e-49 | -8.615850e-47 |
| Msa0017900 | Msa1167170 | -0.800455 | 1.429478e-48 | -8.615850e-47 |
| Msa0017900 | Msa1171870 | -0.822852 | 1.897829e-53 | -8.615850e-47 |
| Msa0017900 | Msa1187520 | -0.802235 | 6.175666e-49 | -8.615850e-47 |
| Msa0017900 | Msa1282920 | -0.805480 | 1.308392e-49 | -8.615850e-47 |
| Msa0017900 | Msa1306430 | -0.822865 | 1.884032e-53 | -8.615850e-47 |
| Msa0017900 | Msa1335860 | -0.812308 | 4.525555e-51 | -8.615850e-47 |
| Msa0017900 | Msa1427830 | -0.802288 | 6.022465e-49 | -8.615850e-47 |
| Msa0017900 | Msa1453620 | -0.816205 | 6.235313e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017900 | MtrunA17_Chr1g0152061 | 97.723 | 527 | 8 | 2 | 62 | 585 | 1 | 526 | 0.0 | 1048 |
| Msa0017900 | MtrunA17_Chr3g0135201 | 82.692 | 520 | 86 | 1 | 62 | 581 | 2 | 517 | 0.0 | 884 |
| Msa0017900 | MtrunA17_Chr4g0049291 | 77.927 | 521 | 113 | 2 | 65 | 583 | 5 | 525 | 0.0 | 805 |
| Msa0017900 | MtrunA17_Chr6g0463581 | 73.367 | 199 | 53 | 0 | 385 | 583 | 1 | 199 | 2.98e-101 | 305 |
| Msa0017900 | MtrunA17_Chr6g0463781 | 73.656 | 186 | 49 | 0 | 364 | 549 | 20 | 205 | 8.95e-96 | 291 |
| Msa0017900 | MtrunA17_Chr6g0463601 | 63.905 | 169 | 59 | 2 | 68 | 234 | 9 | 177 | 2.36e-66 | 214 |
| Msa0017900 | MtrunA17_Chr6g0463751 | 84.211 | 95 | 15 | 0 | 140 | 234 | 38 | 132 | 1.43e-54 | 181 |
| Msa0017900 | MtrunA17_Chr5g0411591 | 79.762 | 84 | 17 | 0 | 458 | 541 | 35 | 118 | 2.76e-38 | 137 |
| Msa0017900 | MtrunA17_Chr7g0240231 | 77.381 | 84 | 19 | 0 | 456 | 539 | 33 | 116 | 2.10e-36 | 131 |
| Msa0017900 | MtrunA17_Chr6g0463591 | 73.750 | 80 | 20 | 1 | 292 | 370 | 6 | 85 | 3.71e-33 | 121 |
| Msa0017900 | MtrunA17_Chr6g0463771 | 76.316 | 76 | 17 | 1 | 291 | 365 | 11 | 86 | 1.48e-32 | 122 |
| Msa0017900 | MtrunA17_Chr6g0463761 | 68.966 | 58 | 18 | 0 | 235 | 292 | 24 | 81 | 1.40e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0017900 | AT1G58440.1 | 76.529 | 507 | 112 | 3 | 79 | 582 | 23 | 525 | 0.0 | 809 |
| Msa0017900 | AT4G37760.1 | 74.263 | 509 | 121 | 2 | 71 | 579 | 17 | 515 | 0.0 | 765 |
| Msa0017900 | AT2G22830.1 | 72.994 | 511 | 135 | 2 | 71 | 581 | 78 | 585 | 0.0 | 762 |
| Msa0017900 | AT5G24150.1 | 49.898 | 489 | 240 | 3 | 94 | 579 | 23 | 509 | 8.71e-177 | 510 |
| Msa0017900 | AT5G24160.1 | 49.688 | 481 | 237 | 4 | 104 | 579 | 30 | 510 | 3.63e-171 | 496 |
| Msa0017900 | AT5G24150.2 | 50.107 | 467 | 228 | 3 | 94 | 557 | 23 | 487 | 2.56e-167 | 485 |
| Msa0017900 | AT5G24140.1 | 44.636 | 522 | 265 | 6 | 65 | 578 | 5 | 510 | 2.53e-160 | 468 |
| Msa0017900 | AT5G24160.3 | 48.268 | 433 | 220 | 3 | 151 | 579 | 1 | 433 | 6.07e-149 | 436 |
| Msa0017900 | AT5G24160.2 | 50.838 | 358 | 171 | 4 | 104 | 456 | 30 | 387 | 1.23e-124 | 372 |
| Msa0017900 | AT5G24155.3 | 49.438 | 89 | 43 | 1 | 94 | 182 | 25 | 111 | 5.67e-21 | 89.0 |
| Msa0017900 | AT5G24155.2 | 51.807 | 83 | 38 | 1 | 94 | 176 | 25 | 105 | 1.26e-20 | 87.8 |
| Msa0017900 | AT5G24155.1 | 51.807 | 83 | 38 | 1 | 94 | 176 | 25 | 105 | 1.66e-20 | 87.8 |
Find 180 sgRNAs with CRISPR-Local
Find 329 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCTTCGGCCTTAATTA+TGG | 0.175341 | 1_1:+29907737 | None:intergenic |
| CGAATCTCTGTACTGCTTAT+AGG | 0.207749 | 1_1:+29908817 | None:intergenic |
| TTCTTTGCTGTCGCAGTATT+TGG | 0.207797 | 1_1:-29907943 | Msa0017900:CDS |
| GGCTCCTGCCAATGTATTTA+TGG | 0.220414 | 1_1:+29908119 | None:intergenic |
| GGACCGATCTCTTTACTTTC+AGG | 0.235514 | 1_1:-29908000 | Msa0017900:CDS |
| TACCTTACGCAAGGTATAAA+AGG | 0.241334 | 1_1:+29908341 | None:intergenic |
| CAATATATGCAGTGTAAATA+TGG | 0.251277 | 1_1:-29909347 | Msa0017900:intron |
| ATAGATATATGTATACATTT+TGG | 0.253698 | 1_1:-29907575 | Msa0017900:three_prime_UTR |
| ATTCCTTCGGCCTTAATTAT+GGG | 0.317534 | 1_1:+29907738 | None:intergenic |
| GGTGATGACGACGGAGAATT+AGG | 0.317603 | 1_1:+29911659 | None:intergenic |
| TTTCATCAATTTCTCAAGAA+TGG | 0.317621 | 1_1:+29907609 | None:intergenic |
| GCTCCAATCCACACCCTCTT+AGG | 0.317731 | 1_1:+29907889 | None:intergenic |
| AACATGCGTCATCCACTAAC+AGG | 0.321463 | 1_1:-29908468 | Msa0017900:CDS |
| ATTTCCTTCCTTGCTTCATC+GGG | 0.330002 | 1_1:+29908072 | None:intergenic |
| TTTGCTATTATGGTCCTATT+CGG | 0.338276 | 1_1:-29907347 | Msa0017900:three_prime_UTR |
| CATTTCCTTCCTTGCTTCAT+CGG | 0.342711 | 1_1:+29908071 | None:intergenic |
| ATCTATTCCTAGGGTGCATC+TGG | 0.355582 | 1_1:-29907771 | Msa0017900:intron |
| ATTGTTGGAGCTGGTATTGC+TGG | 0.356020 | 1_1:-29911421 | Msa0017900:CDS |
| TATTCTTTGTAGTTTGTAAC+TGG | 0.364286 | 1_1:-29907543 | Msa0017900:three_prime_UTR |
| CCGGCGAGATTCCTCCGATA+TGG | 0.372235 | 1_1:-29911623 | Msa0017900:CDS |
| TGGTATTGCTGGTGCTGCTT+TGG | 0.375955 | 1_1:-29911410 | Msa0017900:CDS |
| ATCATCATAATTCCTCTTAC+CGG | 0.393754 | 1_1:+29911531 | None:intergenic |
| ATAGAAGGAACCTTCGTTCC+AGG | 0.396833 | 1_1:+29908778 | None:intergenic |
| CTTATAGGATAGAAAAGAAT+TGG | 0.397306 | 1_1:+29908832 | None:intergenic |
| TTCATCAATTTCTCAAGAAT+GGG | 0.398594 | 1_1:+29907610 | None:intergenic |
| ATTGATGCACAGCGAGTGTT+TGG | 0.403213 | 1_1:-29909956 | Msa0017900:CDS |
| TTAGTTGAACTCGGGCTTCA+AGG | 0.404149 | 1_1:-29910097 | Msa0017900:intron |
| TATGTTTCCCGTCCTTGAAA+AGG | 0.423296 | 1_1:+29909927 | None:intergenic |
| CAGTACAGAGATTCGTTGTC+TGG | 0.427940 | 1_1:-29908809 | Msa0017900:CDS |
| AGTGAGCCTGACAGAATTGT+TGG | 0.434089 | 1_1:-29910151 | Msa0017900:CDS |
| GTTTGATATATTAGTCTTTG+CGG | 0.434218 | 1_1:-29907325 | Msa0017900:three_prime_UTR |
| TAATAAGCTGGAACAGTGGC+AGG | 0.434401 | 1_1:+29907699 | None:intergenic |
| CTGGCAGAAGCTTTCACAAC+GGG | 0.439239 | 1_1:-29909862 | Msa0017900:CDS |
| ATATCACCGTTTGAAATAGA+AGG | 0.439792 | 1_1:+29908763 | None:intergenic |
| TACCATTTCCTTCACCTAAG+AGG | 0.439865 | 1_1:-29907903 | Msa0017900:CDS |
| TACTTTCAGGATTAAACCCT+CGG | 0.441584 | 1_1:-29907987 | Msa0017900:CDS |
| AAATGGAGAACCAAGCTTAA+GGG | 0.444726 | 1_1:+29907964 | None:intergenic |
| AATCACGGCCATGTCATACT+TGG | 0.445861 | 1_1:-29908865 | Msa0017900:CDS |
| ATACTGCGACAGCAAAGAAA+TGG | 0.451961 | 1_1:+29907947 | None:intergenic |
| GAAATGGAGAACCAAGCTTA+AGG | 0.452126 | 1_1:+29907963 | None:intergenic |
| ACTAATATATCAAACCGAAT+AGG | 0.453456 | 1_1:+29907333 | None:intergenic |
| ATACAAGAATAAAGATGGTC+AGG | 0.454757 | 1_1:-29909269 | Msa0017900:CDS |
| TTCCTTCACCTAAGAGGGTG+TGG | 0.457909 | 1_1:-29907897 | Msa0017900:CDS |
| CGTTGTCTGGTTGATGTACC+TGG | 0.458380 | 1_1:-29908796 | Msa0017900:CDS |
| GATATGGATCTATACAATAT+CGG | 0.460081 | 1_1:-29911607 | Msa0017900:CDS |
| TTAGTCTTTGCGGTTGCACT+TGG | 0.461555 | 1_1:-29907315 | Msa0017900:three_prime_UTR |
| GATGCTGATGTTATCATTGT+TGG | 0.461594 | 1_1:-29911436 | Msa0017900:CDS |
| TGTTAAAACTCTTGAGGGAA+AGG | 0.463615 | 1_1:-29907372 | Msa0017900:three_prime_UTR |
| ACCAATGTTAAAACTCTTGA+GGG | 0.467077 | 1_1:-29907377 | Msa0017900:three_prime_UTR |
| TTTGATTATCTGAGCCTTGG+AGG | 0.468151 | 1_1:-29908036 | Msa0017900:CDS |
| GAGGTATGGTAGTTATAGTC+TGG | 0.469620 | 1_1:+29907448 | None:intergenic |
| AAGGAAATGGTAATAGTAAA+CGG | 0.471509 | 1_1:+29907914 | None:intergenic |
| TACCCGTCTCTCTTATCCCT+TGG | 0.472132 | 1_1:-29909906 | Msa0017900:CDS |
| TGCACTGAAAACCTTGTAAA+GGG | 0.475652 | 1_1:+29908098 | None:intergenic |
| ATGAATGCATCATAAAGCTC+AGG | 0.476865 | 1_1:+29908591 | None:intergenic |
| ACTGATAACCTCTGATTAAG+AGG | 0.479382 | 1_1:+29907429 | None:intergenic |
| AACTCTCCAACAATTCTGTC+AGG | 0.479622 | 1_1:+29910145 | None:intergenic |
| CTAGCCTTTAGAACTACATT+CGG | 0.480033 | 1_1:+29907406 | None:intergenic |
| CTTTGAAAACCACAAGAGAA+AGG | 0.481779 | 1_1:+29911855 | None:intergenic |
| CGGAGGAATCTCGCCGGAGA+TGG | 0.481835 | 1_1:+29911629 | None:intergenic |
| ACCATTTCCTTCACCTAAGA+GGG | 0.482569 | 1_1:-29907902 | Msa0017900:CDS |
| AAAGTGTAGGTGCATCGTTC+AGG | 0.483815 | 1_1:+29908379 | None:intergenic |
| ATGCAGTGTAAATATGGAGC+AGG | 0.485175 | 1_1:-29909341 | Msa0017900:intron |
| GCAGATCCTCGTCCTACTCC+TGG | 0.487082 | 1_1:-29908516 | Msa0017900:CDS |
| AGATCGGTCCTTCTGAGAAT+AGG | 0.487513 | 1_1:+29908013 | None:intergenic |
| ATTCAATCGGAGAAACTTAA+CGG | 0.487604 | 1_1:-29911460 | Msa0017900:CDS |
| AGTACAAATCCTTTCTCTTG+TGG | 0.488178 | 1_1:-29911864 | Msa0017900:five_prime_UTR |
| AAACCCTCGGCCCTTAAGCT+TGG | 0.488521 | 1_1:-29907974 | Msa0017900:CDS |
| AAACATCTGTCGAATTCCTT+CGG | 0.488723 | 1_1:+29907725 | None:intergenic |
| CCACTTACCATTGTTTGTGA+TGG | 0.489264 | 1_1:-29909229 | Msa0017900:CDS |
| TCGTTCTCTTTGCAACCCTA+AGG | 0.492478 | 1_1:-29909188 | Msa0017900:intron |
| AAGTTTCACTCAGATGTCTC+TGG | 0.495602 | 1_1:-29909881 | Msa0017900:CDS |
| TTGTCCCCTTCTCTTCAAGT+AGG | 0.497068 | 1_1:+29909305 | None:intergenic |
| TTTCTCCGATTGAATATCTC+CGG | 0.497445 | 1_1:+29911468 | None:intergenic |
| ATGTTTCCCGTCCTTGAAAA+GGG | 0.498737 | 1_1:+29909928 | None:intergenic |
| CAGTCCGAATGTAGTTCTAA+AGG | 0.501023 | 1_1:-29907410 | Msa0017900:three_prime_UTR |
| ATGCACTGAAAACCTTGTAA+AGG | 0.506837 | 1_1:+29908097 | None:intergenic |
| TCTCCCATCAGTACGGCTCC+AGG | 0.507821 | 1_1:+29908498 | None:intergenic |
| AGTTATAGTCTGGTATGTAA+TGG | 0.508101 | 1_1:+29907458 | None:intergenic |
| ATCACCACTGTCACCATCTC+CGG | 0.508147 | 1_1:-29911642 | Msa0017900:CDS |
| GGAGTAGGACGAGGATCTGC+TGG | 0.509133 | 1_1:+29908519 | None:intergenic |
| GATATTGTATAGATCCATAT+CGG | 0.509930 | 1_1:+29911609 | None:intergenic |
| TACTCCTGGAGCCGTACTGA+TGG | 0.510278 | 1_1:-29908502 | Msa0017900:CDS |
| TCCACCATAAATACATTGGC+AGG | 0.514312 | 1_1:-29908123 | Msa0017900:CDS |
| TCTGCTGGCATACTTCTGTT+CGG | 0.516285 | 1_1:+29908534 | None:intergenic |
| GCTGCTTTGGCTCATACACT+TGG | 0.517755 | 1_1:-29911397 | Msa0017900:CDS |
| AAGGTTCCTTCTATTTCAAA+CGG | 0.519651 | 1_1:-29908769 | Msa0017900:CDS |
| CATTTCCCTACTTGAAGAGA+AGG | 0.524530 | 1_1:-29909311 | Msa0017900:CDS |
| CACCAATGTTAAAACTCTTG+AGG | 0.529113 | 1_1:-29907378 | Msa0017900:three_prime_UTR |
| AAAGACGACAGTTGCTCCGC+AGG | 0.531503 | 1_1:-29908728 | Msa0017900:intron |
| GAAGAGAAGGGGACAATCAA+AGG | 0.531539 | 1_1:-29909298 | Msa0017900:CDS |
| ACCCTCTTAGGTGAAGGAAA+TGG | 0.532098 | 1_1:+29907901 | None:intergenic |
| GATGTTATCATTGTTGGAGC+TGG | 0.533082 | 1_1:-29911430 | Msa0017900:CDS |
| CAGTGGACAAAGGCAACATA+AGG | 0.534627 | 1_1:-29908563 | Msa0017900:CDS |
| TCACCTAAGAGGGTGTGGAT+TGG | 0.535303 | 1_1:-29907892 | Msa0017900:CDS |
| TGGATCTATACAATATCGGT+TGG | 0.539153 | 1_1:-29911603 | Msa0017900:CDS |
| TGTCCCCTTCTCTTCAAGTA+GGG | 0.539941 | 1_1:+29909306 | None:intergenic |
| TCAGATAATCAAAACAAGCT+TGG | 0.542781 | 1_1:+29908046 | None:intergenic |
| GTATTTATGGTGGATGCCAC+AGG | 0.543363 | 1_1:+29908132 | None:intergenic |
| GAATAAAGATGGTCAGGCAT+TGG | 0.543395 | 1_1:-29909263 | Msa0017900:CDS |
| GCTGTCGCAGTATTTGGTGT+TGG | 0.545682 | 1_1:-29907937 | Msa0017900:CDS |
| TCTCTCTGCCAAGTTGGCAG+AGG | 0.548300 | 1_1:+29911723 | None:intergenic |
| ATCTCAAATTAGTTGAACTC+GGG | 0.550747 | 1_1:-29910105 | Msa0017900:CDS |
| CCATCACAAACAATGGTAAG+TGG | 0.554704 | 1_1:+29909229 | None:intergenic |
| ATTGGCAGGAGCCCTTTACA+AGG | 0.556237 | 1_1:-29908109 | Msa0017900:CDS |
| ATTTCCCTACTTGAAGAGAA+GGG | 0.556547 | 1_1:-29909310 | Msa0017900:CDS |
| AGAACCAAGCTTAAGGGCCG+AGG | 0.556784 | 1_1:+29907970 | None:intergenic |
| GTGCAATACAAGAATAAAGA+TGG | 0.557801 | 1_1:-29909274 | Msa0017900:CDS |
| GCAAGGTATAAAAGGATTCG+AGG | 0.560224 | 1_1:+29908349 | None:intergenic |
| TTTGGATGTAACAGAAAGTG+AGG | 0.561327 | 1_1:+29911760 | None:intergenic |
| TAACCTCTGATTAAGAGGTA+TGG | 0.565802 | 1_1:+29907434 | None:intergenic |
| TGAGAGATGCGAGACGGCCA+CGG | 0.569024 | 1_1:+29911809 | None:intergenic |
| TTCCTTCCTTGCTTCATCGG+GGG | 0.569233 | 1_1:+29908074 | None:intergenic |
| AGTCTTATCCAACACGTACA+CGG | 0.569549 | 1_1:-29911895 | Msa0017900:five_prime_UTR |
| TATCTCAAATTAGTTGAACT+CGG | 0.569550 | 1_1:-29910106 | Msa0017900:CDS |
| CGTAGCATTGTCTGACATTG+TGG | 0.569995 | 1_1:-29908433 | Msa0017900:CDS |
| TATTCAGAGGATGCGAGAGA+AGG | 0.570757 | 1_1:-29909834 | Msa0017900:CDS |
| ACTCCTGGAGCCGTACTGAT+GGG | 0.575316 | 1_1:-29908501 | Msa0017900:CDS |
| CTTCTGAGAATAGGCCTCCA+AGG | 0.578133 | 1_1:+29908022 | None:intergenic |
| TTCCAAGGGATAAGAGAGAC+GGG | 0.578896 | 1_1:+29909904 | None:intergenic |
| TTACCCATAATTAAGGCCGA+AGG | 0.579355 | 1_1:-29907741 | Msa0017900:CDS |
| ATCCACACCCTCTTAGGTGA+AGG | 0.580520 | 1_1:+29907895 | None:intergenic |
| ATCAGTACGGCTCCAGGAGT+AGG | 0.585947 | 1_1:+29908504 | None:intergenic |
| GTGTTTAACTGCAGATTGTG+TGG | 0.593192 | 1_1:-29909984 | Msa0017900:intron |
| TTTCCAAGGGATAAGAGAGA+CGG | 0.593552 | 1_1:+29909903 | None:intergenic |
| AAATGATTACTTGGGAAGTG+AGG | 0.593662 | 1_1:+29909808 | None:intergenic |
| GAATGCATCTCCCATCAGTA+CGG | 0.593708 | 1_1:+29908491 | None:intergenic |
| AATCCTGAAAGTAAAGAGAT+CGG | 0.595714 | 1_1:+29907997 | None:intergenic |
| TGATGCCGGAGATATTCAAT+CGG | 0.599090 | 1_1:-29911473 | Msa0017900:CDS |
| TGCAGTGTAAATATGGAGCA+GGG | 0.600999 | 1_1:-29909340 | Msa0017900:intron |
| TCGAGGTATTTGCAAAGTGT+AGG | 0.602201 | 1_1:+29908366 | None:intergenic |
| GAACCAAGCTTAAGGGCCGA+GGG | 0.602741 | 1_1:+29907971 | None:intergenic |
| TTCATAGCCGCAGTGGACAA+AGG | 0.603410 | 1_1:-29908573 | Msa0017900:CDS |
| TTTGGCTCATACACTTGGCA+AGG | 0.603791 | 1_1:-29911392 | Msa0017900:intron |
| CTTGGAGGCCTATTCTCAGA+AGG | 0.605501 | 1_1:-29908021 | Msa0017900:CDS |
| TTTCCTTCCTTGCTTCATCG+GGG | 0.610138 | 1_1:+29908073 | None:intergenic |
| AGCGTGACGAGTACTGATGC+CGG | 0.610394 | 1_1:-29911487 | Msa0017900:CDS |
| GTTGGAGAGTTGCTACAACC+TGG | 0.611332 | 1_1:-29910133 | Msa0017900:CDS |
| TGAATGCATCATAAAGCTCA+GGG | 0.611808 | 1_1:+29908592 | None:intergenic |
| TTTCCCTACTTGAAGAGAAG+GGG | 0.612732 | 1_1:-29909309 | Msa0017900:CDS |
| AATTAAGCCAACAAAACAAG+AGG | 0.613978 | 1_1:+29908915 | None:intergenic |
| GGCATCCACCATAAATACAT+TGG | 0.614534 | 1_1:-29908127 | Msa0017900:CDS |
| GGTTGATGTACCTGGAACGA+AGG | 0.615232 | 1_1:-29908788 | Msa0017900:CDS |
| TTTCAAAATGCATTTACTGG+GGG | 0.616100 | 1_1:+29907669 | None:intergenic |
| ACATGCGTCATCCACTAACA+GGG | 0.618189 | 1_1:-29908467 | Msa0017900:CDS |
| TCTGTAATAAGCTGGAACAG+TGG | 0.618702 | 1_1:+29907695 | None:intergenic |
| AACAGAAAGTGAGGGAAAGT+AGG | 0.620174 | 1_1:+29911769 | None:intergenic |
| GGATAGAAAAGAATTGGCGA+AGG | 0.622799 | 1_1:+29908838 | None:intergenic |
| CAGCTAATAACATGCGTCCG+TGG | 0.622861 | 1_1:-29911826 | Msa0017900:five_prime_UTR |
| GCATCGTTCAGGTCACGCAT+AGG | 0.624882 | 1_1:+29908390 | None:intergenic |
| CTACCATACCTCTTAATCAG+AGG | 0.624995 | 1_1:-29907437 | Msa0017900:three_prime_UTR |
| TCCTGCCAATGTATTTATGG+TGG | 0.628205 | 1_1:+29908122 | None:intergenic |
| GAAACAGCCATCACAAACAA+TGG | 0.630963 | 1_1:+29909222 | None:intergenic |
| CACAATGTCAGACAATGCTA+CGG | 0.631265 | 1_1:+29908434 | None:intergenic |
| AATGCATCATAAAGCTCAGG+GGG | 0.632643 | 1_1:+29908594 | None:intergenic |
| GAACTTCCATGTGCTAATCA+CGG | 0.642666 | 1_1:-29908880 | Msa0017900:CDS |
| TGATGCATTCATAGCCGCAG+TGG | 0.644164 | 1_1:-29908580 | Msa0017900:CDS |
| TTGGATGTAACAGAAAGTGA+GGG | 0.649729 | 1_1:+29911761 | None:intergenic |
| AATGTGCGCCGTGTACGTGT+TGG | 0.650046 | 1_1:+29911887 | None:intergenic |
| ACGGCTCCAGGAGTAGGACG+AGG | 0.651326 | 1_1:+29908510 | None:intergenic |
| AGACAACATTACCTTACGCA+AGG | 0.652245 | 1_1:+29908332 | None:intergenic |
| AATAAGCTGGAACAGTGGCA+GGG | 0.653392 | 1_1:+29907700 | None:intergenic |
| ATTAAGCCAACAAAACAAGA+GGG | 0.654720 | 1_1:+29908916 | None:intergenic |
| TATGTTGCCTTTGTCCACTG+CGG | 0.661247 | 1_1:+29908566 | None:intergenic |
| AAGGATCTCCAAGTATGACA+TGG | 0.662022 | 1_1:+29908857 | None:intergenic |
| AATGCATGAGAGATGCGAGA+CGG | 0.663480 | 1_1:+29911803 | None:intergenic |
| ACTAATTTGAGATAGCCACC+AGG | 0.664000 | 1_1:+29910115 | None:intergenic |
| CTCGCCGGAGATGGTGACAG+TGG | 0.666664 | 1_1:+29911638 | None:intergenic |
| CCATATCGGAGGAATCTCGC+CGG | 0.670557 | 1_1:+29911623 | None:intergenic |
| TGATGTGAATGACAAGGTGA+AGG | 0.671331 | 1_1:-29911512 | Msa0017900:CDS |
| ACATGGCCGTGATTAGCACA+TGG | 0.674486 | 1_1:+29908874 | None:intergenic |
| ATTGTATAGATCCATATCGG+AGG | 0.691081 | 1_1:+29911612 | None:intergenic |
| TCTGGCAGAAGCTTTCACAA+CGG | 0.697681 | 1_1:-29909863 | Msa0017900:CDS |
| ATGCGTCATCCACTAACAGG+GGG | 0.711944 | 1_1:-29908465 | Msa0017900:CDS |
| CATGCGTCATCCACTAACAG+GGG | 0.711975 | 1_1:-29908466 | Msa0017900:CDS |
| TTATGATGATGTGAATGACA+AGG | 0.730862 | 1_1:-29911518 | Msa0017900:CDS |
| GGAGAGTTGCTACAACCTGG+TGG | 0.733265 | 1_1:-29910130 | Msa0017900:CDS |
| GAATGCATCATAAAGCTCAG+GGG | 0.736361 | 1_1:+29908593 | None:intergenic |
| GGTGACAGTGGTGATGACGA+CGG | 0.766129 | 1_1:+29911650 | None:intergenic |
| ATGCATCATAAAGCTCAGGG+GGG | 0.790354 | 1_1:+29908595 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATAAAATATTATGCAATAT+AGG | - | chr1_1:29909003-29909022 | Msa0017900:intron | 10.0% |
| !! | AAAAAATAATTTATAGAACT+TGG | + | chr1_1:29910523-29910542 | None:intergenic | 10.0% |
| !! | TGAATATTGAATATTGAATA+TGG | - | chr1_1:29907902-29907921 | Msa0017900:CDS | 15.0% |
| !!! | TTATTTTGTTTTACTTTCAT+TGG | + | chr1_1:29908238-29908257 | None:intergenic | 15.0% |
| !!! | TTAAAAAGCTTTATATATTG+TGG | - | chr1_1:29908458-29908477 | Msa0017900:CDS | 15.0% |
| !!! | TAAAAAGCTTTATATATTGT+GGG | - | chr1_1:29908459-29908478 | Msa0017900:CDS | 15.0% |
| !!! | AACAACTTTATTTTATCTTT+TGG | + | chr1_1:29908561-29908580 | None:intergenic | 15.0% |
| !!! | AATTACGGAAAATTTTTATT+TGG | + | chr1_1:29910131-29910150 | None:intergenic | 15.0% |
| !! | AAATAACAATCAATGAATTA+CGG | + | chr1_1:29910146-29910165 | None:intergenic | 15.0% |
| !!! | TAATTCATTGATTGTTATTT+TGG | - | chr1_1:29910146-29910165 | Msa0017900:CDS | 15.0% |
| !!! | TATAAATTATTTTTTAGCCT+TGG | - | chr1_1:29910528-29910547 | Msa0017900:intron | 15.0% |
| !! | AAACTGAAATAAAAATAATG+CGG | + | chr1_1:29911372-29911391 | None:intergenic | 15.0% |
| !!! | ATAGATATATGTATACATTT+TGG | - | chr1_1:29911637-29911656 | Msa0017900:CDS | 15.0% |
| !!! | AATTTTCTAAAATAGCAAAA+AGG | + | chr1_1:29911730-29911749 | None:intergenic | 15.0% |
| !!! | TTATACAATTTGATTTTCTC+CGG | - | chr1_1:29907662-29907681 | Msa0017900:exon | 20.0% |
| !!! | TATTTTTTAAATTGCGTTTG+TGG | - | chr1_1:29907869-29907888 | Msa0017900:intron | 20.0% |
| !!! | ATAAAGTTGATATAGCTAAA+AGG | - | chr1_1:29907972-29907991 | Msa0017900:CDS | 20.0% |
| !!! | AAATTTTGAATCTATTTGAG+AGG | - | chr1_1:29908038-29908057 | Msa0017900:CDS | 20.0% |
| !! | CAAAATTTAATTCTCTTATG+TGG | + | chr1_1:29908784-29908803 | None:intergenic | 20.0% |
| !! | ACACAAACAATATATATTAC+TGG | + | chr1_1:29908855-29908874 | None:intergenic | 20.0% |
| !! | AAATATTATGCAATATAGGA+TGG | - | chr1_1:29909007-29909026 | Msa0017900:intron | 20.0% |
| !! | GTATAAATTACTGAACATTT+AGG | - | chr1_1:29909140-29909159 | Msa0017900:intron | 20.0% |
| !! | AAATTAAATATCAACCCAAA+GGG | + | chr1_1:29909617-29909636 | None:intergenic | 20.0% |
| !! | TAAATTAAATATCAACCCAA+AGG | + | chr1_1:29909618-29909637 | None:intergenic | 20.0% |
| !! | AACTTTCAATAGAACTAATT+TGG | + | chr1_1:29909656-29909675 | None:intergenic | 20.0% |
| !! | TATTATGAGTTTATATCAAC+TGG | + | chr1_1:29909739-29909758 | None:intergenic | 20.0% |
| !!! | AAATTTTTATTTGGTAGTTG+CGG | + | chr1_1:29910122-29910141 | None:intergenic | 20.0% |
| !!! | AATTCTACTCTGAAATAAAA+GGG | + | chr1_1:29910565-29910584 | None:intergenic | 20.0% |
| !!! | AAATTCTACTCTGAAATAAA+AGG | + | chr1_1:29910566-29910585 | None:intergenic | 20.0% |
| !!! | AATCATTTTACCCATAATTA+AGG | - | chr1_1:29911464-29911483 | Msa0017900:CDS | 20.0% |
| !!! | TTTTTCAAAATGCATTTACT+GGG | + | chr1_1:29911548-29911567 | None:intergenic | 20.0% |
| !!! | TTTTTTCAAAATGCATTTAC+TGG | + | chr1_1:29911549-29911568 | None:intergenic | 20.0% |
| ! | GATATTGTATAGATCCATAT+CGG | + | chr1_1:29907606-29907625 | None:intergenic | 25.0% |
| ! | GATATGGATCTATACAATAT+CGG | - | chr1_1:29907605-29907624 | Msa0017900:three_prime_UTR | 25.0% |
| !! | ATTCTGATGTTGACTAATAT+TGG | - | chr1_1:29908395-29908414 | Msa0017900:CDS | 25.0% |
| !! | ATCTTTTATATATACACCTC+AGG | - | chr1_1:29908429-29908448 | Msa0017900:CDS | 25.0% |
| !! | AGCTTTTTAATAAAATCCTG+AGG | + | chr1_1:29908448-29908467 | None:intergenic | 25.0% |
| ! | TATCTCAAATTAGTTGAACT+CGG | - | chr1_1:29909106-29909125 | Msa0017900:intron | 25.0% |
| !!! | ATTACTGAACATTTAGGTTT+TGG | - | chr1_1:29909146-29909165 | Msa0017900:intron | 25.0% |
| ! | CATATATTATACATTCGCAA+GGG | + | chr1_1:29909433-29909452 | None:intergenic | 25.0% |
| ! | TATATGGAAAATAGAAACTG+GGG | + | chr1_1:29909590-29909609 | None:intergenic | 25.0% |
| ! | CTATATGGAAAATAGAAACT+GGG | + | chr1_1:29909591-29909610 | None:intergenic | 25.0% |
| ! | TCTATATGGAAAATAGAAAC+TGG | + | chr1_1:29909592-29909611 | None:intergenic | 25.0% |
| ! | TACACTGCATATATTGAAAA+AGG | + | chr1_1:29909861-29909880 | None:intergenic | 25.0% |
| ! | CAATATATGCAGTGTAAATA+TGG | - | chr1_1:29909865-29909884 | Msa0017900:CDS | 25.0% |
| ! | AGTATGTAGAATTCTAATTC+TGG | - | chr1_1:29910235-29910254 | Msa0017900:intron | 25.0% |
| ! | CTTATAGGATAGAAAAGAAT+TGG | + | chr1_1:29910383-29910402 | None:intergenic | 25.0% |
| ! | AACTTAAACAAAACCAAGAA+AGG | + | chr1_1:29910907-29910926 | None:intergenic | 25.0% |
| ! | AAGGAAATGGTAATAGTAAA+CGG | + | chr1_1:29911301-29911320 | None:intergenic | 25.0% |
| ! | AACCAAATTTATCTATTCCT+AGG | - | chr1_1:29911431-29911450 | Msa0017900:CDS | 25.0% |
| ! | ACCAAATTTATCTATTCCTA+GGG | - | chr1_1:29911432-29911451 | Msa0017900:CDS | 25.0% |
| !! | TTTTCAAAATGCATTTACTG+GGG | + | chr1_1:29911547-29911566 | None:intergenic | 25.0% |
| ! | TTCATCAATTTCTCAAGAAT+GGG | + | chr1_1:29911605-29911624 | None:intergenic | 25.0% |
| ! | TTTCATCAATTTCTCAAGAA+TGG | + | chr1_1:29911606-29911625 | None:intergenic | 25.0% |
| !! | TATTCTTTGTAGTTTGTAAC+TGG | - | chr1_1:29911669-29911688 | Msa0017900:CDS | 25.0% |
| ! | ACTAATATATCAAACCGAAT+AGG | + | chr1_1:29911882-29911901 | None:intergenic | 25.0% |
| !!! | GTTTGATATATTAGTCTTTG+CGG | - | chr1_1:29911887-29911906 | Msa0017900:five_prime_UTR | 25.0% |
| ATCATCATAATTCCTCTTAC+CGG | + | chr1_1:29907684-29907703 | None:intergenic | 30.0% | |
| ! | TTATGATGATGTGAATGACA+AGG | - | chr1_1:29907694-29907713 | Msa0017900:CDS | 30.0% |
| ATTCAATCGGAGAAACTTAA+CGG | - | chr1_1:29907752-29907771 | Msa0017900:CDS | 30.0% | |
| !!! | GCGTTGTTTTTATATTGTTG+AGG | - | chr1_1:29907924-29907943 | Msa0017900:CDS | 30.0% |
| ! | AGTGATTCATAGCTTTTCAT+TGG | + | chr1_1:29908090-29908109 | None:intergenic | 30.0% |
| ! | TCATTTTCATTCAACAACGA+AGG | + | chr1_1:29908277-29908296 | None:intergenic | 30.0% |
| TTGTTATCCAATTGAACACT+TGG | - | chr1_1:29908344-29908363 | Msa0017900:CDS | 30.0% | |
| CATTATTCCAAGTGTTCAAT+TGG | + | chr1_1:29908354-29908373 | None:intergenic | 30.0% | |
| !! | TATATATTGTGGGTCTTGTT+TGG | - | chr1_1:29908469-29908488 | Msa0017900:CDS | 30.0% |
| !! | GCTATTTTCATAAGATATCC+TGG | - | chr1_1:29908597-29908616 | Msa0017900:CDS | 30.0% |
| AAGATATCCTGGAGAATTTA+TGG | - | chr1_1:29908608-29908627 | Msa0017900:intron | 30.0% | |
| CTTATTTCCATAAATTCTCC+AGG | + | chr1_1:29908618-29908637 | None:intergenic | 30.0% | |
| TATGGAAATAAGCTGAAAAC+AGG | - | chr1_1:29908626-29908645 | Msa0017900:intron | 30.0% | |
| AATAAGCTGAAAACAGGTTA+TGG | - | chr1_1:29908632-29908651 | Msa0017900:intron | 30.0% | |
| AAACACTTGTGAAACTGTTT+GGG | + | chr1_1:29908687-29908706 | None:intergenic | 30.0% | |
| TAAACACTTGTGAAACTGTT+TGG | + | chr1_1:29908688-29908707 | None:intergenic | 30.0% | |
| AAAAAGTGACCAACAAGTTT+GGG | + | chr1_1:29908739-29908758 | None:intergenic | 30.0% | |
| TAAAAAGTGACCAACAAGTT+TGG | + | chr1_1:29908740-29908759 | None:intergenic | 30.0% | |
| TTTGTGTTGTATTGTTGATC+AGG | - | chr1_1:29908868-29908887 | Msa0017900:CDS | 30.0% | |
| ATCTCAAATTAGTTGAACTC+GGG | - | chr1_1:29909107-29909126 | Msa0017900:intron | 30.0% | |
| TTAAACACAAGACAGTTGTT+AGG | + | chr1_1:29909216-29909235 | None:intergenic | 30.0% | |
| AAGGGAAGAAATGATTACTT+GGG | + | chr1_1:29909415-29909434 | None:intergenic | 30.0% | |
| GCATATATTATACATTCGCA+AGG | + | chr1_1:29909434-29909453 | None:intergenic | 30.0% | |
| GAATGTATAATATATGCGTG+TGG | - | chr1_1:29909437-29909456 | Msa0017900:intron | 30.0% | |
| TGACAAACAGATACTAGTAA+AGG | + | chr1_1:29909469-29909488 | None:intergenic | 30.0% | |
| !! | AGATTGACTTGCTAGATTAT+TGG | - | chr1_1:29909496-29909515 | Msa0017900:intron | 30.0% |
| TAAATGTAGCAACGAATAAC+AGG | + | chr1_1:29909534-29909553 | None:intergenic | 30.0% | |
| TGTTATTCGTTGCTACATTT+AGG | - | chr1_1:29909533-29909552 | Msa0017900:intron | 30.0% | |
| ! | CAATAGAACTAATTTGGTTC+AGG | + | chr1_1:29909650-29909669 | None:intergenic | 30.0% |
| TACTTGATCATATCATCCTA+TGG | - | chr1_1:29909702-29909721 | Msa0017900:intron | 30.0% | |
| TTGCTTAAATACGAGTTAAC+AGG | + | chr1_1:29909831-29909850 | None:intergenic | 30.0% | |
| GTGCAATACAAGAATAAAGA+TGG | - | chr1_1:29909938-29909957 | Msa0017900:CDS | 30.0% | |
| ATACAAGAATAAAGATGGTC+AGG | - | chr1_1:29909943-29909962 | Msa0017900:CDS | 30.0% | |
| CATTACAGAATCATTCTGAA+AGG | + | chr1_1:29910058-29910077 | None:intergenic | 30.0% | |
| CTTTCAGAATGATTCTGTAA+TGG | - | chr1_1:29910056-29910075 | Msa0017900:intron | 30.0% | |
| !!! | TTTTGGTTTACAAAAGCTGT+TGG | - | chr1_1:29910163-29910182 | Msa0017900:CDS | 30.0% |
| ! | CAGAGTTTTCTTACTACTAA+AGG | - | chr1_1:29910188-29910207 | Msa0017900:CDS | 30.0% |
| !! | TCTTATATTGCTTTGTTTGC+AGG | - | chr1_1:29910265-29910284 | Msa0017900:intron | 30.0% |
| ATTAAGCCAACAAAACAAGA+GGG | + | chr1_1:29910299-29910318 | None:intergenic | 30.0% | |
| AATTAAGCCAACAAAACAAG+AGG | + | chr1_1:29910300-29910319 | None:intergenic | 30.0% | |
| AAGGTTCCTTCTATTTCAAA+CGG | - | chr1_1:29910443-29910462 | Msa0017900:intron | 30.0% | |
| ! | ATATCACCGTTTGAAATAGA+AGG | + | chr1_1:29910452-29910471 | None:intergenic | 30.0% |
| TATAGAACTTGGAGAATGAT+TGG | + | chr1_1:29910512-29910531 | None:intergenic | 30.0% | |
| ATTACGTTGAAAATGATTGC+AGG | - | chr1_1:29910593-29910612 | Msa0017900:intron | 30.0% | |
| TCAGATAATCAAAACAAGCT+TGG | + | chr1_1:29911169-29911188 | None:intergenic | 30.0% | |
| AATCCTGAAAGTAAAGAGAT+CGG | + | chr1_1:29911218-29911237 | None:intergenic | 30.0% | |
| ACCCTAGGAATAGATAAATT+TGG | + | chr1_1:29911436-29911455 | None:intergenic | 30.0% | |
| TTTCAAAATGCATTTACTGG+GGG | + | chr1_1:29911546-29911565 | None:intergenic | 30.0% | |
| AGTTATAGTCTGGTATGTAA+TGG | + | chr1_1:29911757-29911776 | None:intergenic | 30.0% | |
| ACCAATGTTAAAACTCTTGA+GGG | - | chr1_1:29911835-29911854 | Msa0017900:five_prime_UTR | 30.0% | |
| !! | TTTGCTATTATGGTCCTATT+CGG | - | chr1_1:29911865-29911884 | Msa0017900:five_prime_UTR | 30.0% |
| AGTACAAATCCTTTCTCTTG+TGG | - | chr1_1:29907348-29907367 | Msa0017900:three_prime_UTR | 35.0% | |
| ! | CTTTGAAAACCACAAGAGAA+AGG | + | chr1_1:29907360-29907379 | None:intergenic | 35.0% |
| TTGGATGTAACAGAAAGTGA+GGG | + | chr1_1:29907454-29907473 | None:intergenic | 35.0% | |
| TTTGGATGTAACAGAAAGTG+AGG | + | chr1_1:29907455-29907474 | None:intergenic | 35.0% | |
| ! | GAGGAAAAAATGAAGGGTTT+TGG | + | chr1_1:29907473-29907492 | None:intergenic | 35.0% |
| TTGGCAGAGGAAAAAATGAA+GGG | + | chr1_1:29907479-29907498 | None:intergenic | 35.0% | |
| ATTGTATAGATCCATATCGG+AGG | + | chr1_1:29907603-29907622 | None:intergenic | 35.0% | |
| TGGATCTATACAATATCGGT+TGG | - | chr1_1:29907609-29907628 | Msa0017900:three_prime_UTR | 35.0% | |
| !! | ATTTGATTTTCTCCGGTAAG+AGG | - | chr1_1:29907669-29907688 | Msa0017900:exon | 35.0% |
| TTTCTCCGATTGAATATCTC+CGG | + | chr1_1:29907747-29907766 | None:intergenic | 35.0% | |
| GATGCTGATGTTATCATTGT+TGG | - | chr1_1:29907776-29907795 | Msa0017900:intron | 35.0% | |
| ! | GCATATTTGAGTTTATCGAC+TGG | + | chr1_1:29908713-29908732 | None:intergenic | 35.0% |
| ATATGCAAACCCAAACTTGT+TGG | - | chr1_1:29908727-29908746 | Msa0017900:intron | 35.0% | |
| ATTGTTGATCAGGTAGATTC+AGG | - | chr1_1:29908878-29908897 | Msa0017900:CDS | 35.0% | |
| AAACAATACTCAACACACAG+AGG | + | chr1_1:29908950-29908969 | None:intergenic | 35.0% | |
| !! | ACTGAACATTTAGGTTTTGG+TGG | - | chr1_1:29909149-29909168 | Msa0017900:intron | 35.0% |
| ! | TCTGAGTGAAACTTTTCCAA+GGG | + | chr1_1:29909325-29909344 | None:intergenic | 35.0% |
| ! | ATCTGAGTGAAACTTTTCCA+AGG | + | chr1_1:29909326-29909345 | None:intergenic | 35.0% |
| AAATGATTACTTGGGAAGTG+AGG | + | chr1_1:29909407-29909426 | None:intergenic | 35.0% | |
| CAAGGGAAGAAATGATTACT+TGG | + | chr1_1:29909416-29909435 | None:intergenic | 35.0% | |
| CTTGCTAGATTATTGGAAGT+TGG | - | chr1_1:29909503-29909522 | Msa0017900:intron | 35.0% | |
| ! | TTTTCCATATAGATGCCCTT+TGG | - | chr1_1:29909599-29909618 | Msa0017900:intron | 35.0% |
| TTTCCATATAGATGCCCTTT+GGG | - | chr1_1:29909600-29909619 | Msa0017900:intron | 35.0% | |
| GGATGATATGATCAAGTACT+AGG | + | chr1_1:29909700-29909719 | None:intergenic | 35.0% | |
| TCATATCATCCTATGGAGTA+AGG | - | chr1_1:29909709-29909728 | Msa0017900:intron | 35.0% | |
| ATTTCCCTACTTGAAGAGAA+GGG | - | chr1_1:29909902-29909921 | Msa0017900:CDS | 35.0% | |
| TGAAAGGAATTCTCACCTTA+GGG | + | chr1_1:29910042-29910061 | None:intergenic | 35.0% | |
| ! | TTGCGGCTTATTTCTTAGAA+AGG | + | chr1_1:29910105-29910124 | None:intergenic | 35.0% |
| !!! | GATAATCCCTCTTGTTTTGT+TGG | - | chr1_1:29910290-29910309 | Msa0017900:intron | 35.0% |
| TGAATGCATCATAAAGCTCA+GGG | + | chr1_1:29910623-29910642 | None:intergenic | 35.0% | |
| ATGAATGCATCATAAAGCTC+AGG | + | chr1_1:29910624-29910643 | None:intergenic | 35.0% | |
| ! | ATCCTTTTATACCTTGCGTA+AGG | - | chr1_1:29910869-29910888 | Msa0017900:intron | 35.0% |
| TACCTTACGCAAGGTATAAA+AGG | + | chr1_1:29910874-29910893 | None:intergenic | 35.0% | |
| GACTGCTTATTTATTTGTGC+TGG | + | chr1_1:29910931-29910950 | None:intergenic | 35.0% | |
| CATCTTATCAATTGGATCAC+TGG | + | chr1_1:29910973-29910992 | None:intergenic | 35.0% | |
| CAGTGATCCAATTGATAAGA+TGG | - | chr1_1:29910971-29910990 | Msa0017900:intron | 35.0% | |
| TTCTGCTCCATCTTATCAAT+TGG | + | chr1_1:29910981-29911000 | None:intergenic | 35.0% | |
| GTCAATATTGGTGCATTGAA+AGG | + | chr1_1:29911006-29911025 | None:intergenic | 35.0% | |
| GTGTTGGATGAAGTCAATAT+TGG | + | chr1_1:29911018-29911037 | None:intergenic | 35.0% | |
| !!! | GTTTTGAGCTTTAGAAGTGT+TGG | + | chr1_1:29911034-29911053 | None:intergenic | 35.0% |
| TGCACTGAAAACCTTGTAAA+GGG | + | chr1_1:29911117-29911136 | None:intergenic | 35.0% | |
| ATGCACTGAAAACCTTGTAA+AGG | + | chr1_1:29911118-29911137 | None:intergenic | 35.0% | |
| !!! | TGTTTTGATTATCTGAGCCT+TGG | - | chr1_1:29911173-29911192 | Msa0017900:intron | 35.0% |
| TACTTTCAGGATTAAACCCT+CGG | - | chr1_1:29911225-29911244 | Msa0017900:intron | 35.0% | |
| AAATGGAGAACCAAGCTTAA+GGG | + | chr1_1:29911251-29911270 | None:intergenic | 35.0% | |
| ATTCCTTCGGCCTTAATTAT+GGG | + | chr1_1:29911477-29911496 | None:intergenic | 35.0% | |
| AATTCCTTCGGCCTTAATTA+TGG | + | chr1_1:29911478-29911497 | None:intergenic | 35.0% | |
| AAACATCTGTCGAATTCCTT+CGG | + | chr1_1:29911490-29911509 | None:intergenic | 35.0% | |
| TAACCTCTGATTAAGAGGTA+TGG | + | chr1_1:29911781-29911800 | None:intergenic | 35.0% | |
| ACTGATAACCTCTGATTAAG+AGG | + | chr1_1:29911786-29911805 | None:intergenic | 35.0% | |
| !! | CTAGCCTTTAGAACTACATT+CGG | + | chr1_1:29911809-29911828 | None:intergenic | 35.0% |
| CACCAATGTTAAAACTCTTG+AGG | - | chr1_1:29911834-29911853 | Msa0017900:five_prime_UTR | 35.0% | |
| !! | TCCCTCAAGAGTTTTAACAT+TGG | + | chr1_1:29911839-29911858 | None:intergenic | 35.0% |
| TGTTAAAACTCTTGAGGGAA+AGG | - | chr1_1:29911840-29911859 | Msa0017900:five_prime_UTR | 35.0% | |
| !!! | GGGAAAGGTTTTTGCTATTA+TGG | - | chr1_1:29911855-29911874 | Msa0017900:five_prime_UTR | 35.0% |
| ! | AGTCTTATCCAACACGTACA+CGG | - | chr1_1:29907317-29907336 | Msa0017900:three_prime_UTR | 40.0% |
| AACAGAAAGTGAGGGAAAGT+AGG | + | chr1_1:29907446-29907465 | None:intergenic | 40.0% | |
| GTTGGCAGAGGAAAAAATGA+AGG | + | chr1_1:29907480-29907499 | None:intergenic | 40.0% | |
| !!! | CATTTTTTCCTCTGCCAACT+TGG | - | chr1_1:29907481-29907500 | Msa0017900:three_prime_UTR | 40.0% |
| TGATGTGAATGACAAGGTGA+AGG | - | chr1_1:29907700-29907719 | Msa0017900:CDS | 40.0% | |
| TGATGCCGGAGATATTCAAT+CGG | - | chr1_1:29907739-29907758 | Msa0017900:CDS | 40.0% | |
| GATGTTATCATTGTTGGAGC+TGG | - | chr1_1:29907782-29907801 | Msa0017900:intron | 40.0% | |
| ACAACATGACAATCTGCAGT+AGG | - | chr1_1:29908296-29908315 | Msa0017900:intron | 40.0% | |
| ! | ATGTGTCTTGTTGTCTCTCA+TGG | - | chr1_1:29908371-29908390 | Msa0017900:CDS | 40.0% |
| ! | TGTGTCTTGTTGTCTCTCAT+GGG | - | chr1_1:29908372-29908391 | Msa0017900:CDS | 40.0% |
| CTCTTATGTGGTCAAATTGC+AGG | + | chr1_1:29908772-29908791 | None:intergenic | 40.0% | |
| ATAGAAGATCAGCCAGTGAA+AGG | + | chr1_1:29908828-29908847 | None:intergenic | 40.0% | |
| AACTCTCCAACAATTCTGTC+AGG | + | chr1_1:29909070-29909089 | None:intergenic | 40.0% | |
| ! | ACTAATTTGAGATAGCCACC+AGG | + | chr1_1:29909100-29909119 | None:intergenic | 40.0% |
| ! | GTGGATTATGAGTGCTATAG+AGG | - | chr1_1:29909168-29909187 | Msa0017900:intron | 40.0% |
| GTGTTTAACTGCAGATTGTG+TGG | - | chr1_1:29909228-29909247 | Msa0017900:CDS | 40.0% | |
| ! | GTTTGGTTATGCCCTTTTCA+AGG | - | chr1_1:29909273-29909292 | Msa0017900:CDS | 40.0% |
| ATGTTTCCCGTCCTTGAAAA+GGG | + | chr1_1:29909287-29909306 | None:intergenic | 40.0% | |
| TATGTTTCCCGTCCTTGAAA+AGG | + | chr1_1:29909288-29909307 | None:intergenic | 40.0% | |
| TTTCCAAGGGATAAGAGAGA+CGG | + | chr1_1:29909312-29909331 | None:intergenic | 40.0% | |
| AAGTTTCACTCAGATGTCTC+TGG | - | chr1_1:29909331-29909350 | Msa0017900:CDS | 40.0% | |
| ATGCAGTGTAAATATGGAGC+AGG | - | chr1_1:29909871-29909890 | Msa0017900:CDS | 40.0% | |
| TGCAGTGTAAATATGGAGCA+GGG | - | chr1_1:29909872-29909891 | Msa0017900:CDS | 40.0% | |
| CATTTCCCTACTTGAAGAGA+AGG | - | chr1_1:29909901-29909920 | Msa0017900:CDS | 40.0% | |
| TTTCCCTACTTGAAGAGAAG+GGG | - | chr1_1:29909903-29909922 | Msa0017900:CDS | 40.0% | |
| GAATAAAGATGGTCAGGCAT+TGG | - | chr1_1:29909949-29909968 | Msa0017900:CDS | 40.0% | |
| CCATCACAAACAATGGTAAG+TGG | + | chr1_1:29909986-29910005 | None:intergenic | 40.0% | |
| CCACTTACCATTGTTTGTGA+TGG | - | chr1_1:29909983-29910002 | Msa0017900:intron | 40.0% | |
| GAAACAGCCATCACAAACAA+TGG | + | chr1_1:29909993-29910012 | None:intergenic | 40.0% | |
| CTGAAAGGAATTCTCACCTT+AGG | + | chr1_1:29910043-29910062 | None:intergenic | 40.0% | |
| AAAGGAGTTGACAACATGAC+TGG | + | chr1_1:29910087-29910106 | None:intergenic | 40.0% | |
| GAACTTCCATGTGCTAATCA+CGG | - | chr1_1:29910332-29910351 | Msa0017900:intron | 40.0% | |
| AAGGATCTCCAAGTATGACA+TGG | + | chr1_1:29910358-29910377 | None:intergenic | 40.0% | |
| GGATAGAAAAGAATTGGCGA+AGG | + | chr1_1:29910377-29910396 | None:intergenic | 40.0% | |
| CGAATCTCTGTACTGCTTAT+AGG | + | chr1_1:29910398-29910417 | None:intergenic | 40.0% | |
| AATGCATCATAAAGCTCAGG+GGG | + | chr1_1:29910621-29910640 | None:intergenic | 40.0% | |
| GAATGCATCATAAAGCTCAG+GGG | + | chr1_1:29910622-29910641 | None:intergenic | 40.0% | |
| CACAATGTCAGACAATGCTA+CGG | + | chr1_1:29910781-29910800 | None:intergenic | 40.0% | |
| ! | TCGAGGTATTTGCAAAGTGT+AGG | + | chr1_1:29910849-29910868 | None:intergenic | 40.0% |
| GCAAGGTATAAAAGGATTCG+AGG | + | chr1_1:29910866-29910885 | None:intergenic | 40.0% | |
| AGACAACATTACCTTACGCA+AGG | + | chr1_1:29910883-29910902 | None:intergenic | 40.0% | |
| GTAATGTTGTCTGCCTTTCT+TGG | - | chr1_1:29910891-29910910 | Msa0017900:intron | 40.0% | |
| TAAGCAGTCACAAAGCTATC+TGG | - | chr1_1:29910942-29910961 | Msa0017900:intron | 40.0% | |
| GGCATCCACCATAAATACAT+TGG | - | chr1_1:29911085-29911104 | Msa0017900:intron | 40.0% | |
| TCCACCATAAATACATTGGC+AGG | - | chr1_1:29911089-29911108 | Msa0017900:intron | 40.0% | |
| TCCTGCCAATGTATTTATGG+TGG | + | chr1_1:29911093-29911112 | None:intergenic | 40.0% | |
| ATTTCCTTCCTTGCTTCATC+GGG | + | chr1_1:29911143-29911162 | None:intergenic | 40.0% | |
| CATTTCCTTCCTTGCTTCAT+CGG | + | chr1_1:29911144-29911163 | None:intergenic | 40.0% | |
| TTTGATTATCTGAGCCTTGG+AGG | - | chr1_1:29911176-29911195 | Msa0017900:intron | 40.0% | |
| GAAATGGAGAACCAAGCTTA+AGG | + | chr1_1:29911252-29911271 | None:intergenic | 40.0% | |
| ATACTGCGACAGCAAAGAAA+TGG | + | chr1_1:29911268-29911287 | None:intergenic | 40.0% | |
| ! | TTCTTTGCTGTCGCAGTATT+TGG | - | chr1_1:29911269-29911288 | Msa0017900:intron | 40.0% |
| TACCATTTCCTTCACCTAAG+AGG | - | chr1_1:29911309-29911328 | Msa0017900:intron | 40.0% | |
| ACCATTTCCTTCACCTAAGA+GGG | - | chr1_1:29911310-29911329 | Msa0017900:intron | 40.0% | |
| TTACCCATAATTAAGGCCGA+AGG | - | chr1_1:29911471-29911490 | Msa0017900:CDS | 40.0% | |
| TCTGTAATAAGCTGGAACAG+TGG | + | chr1_1:29911520-29911539 | None:intergenic | 40.0% | |
| GAGGTATGGTAGTTATAGTC+TGG | + | chr1_1:29911767-29911786 | None:intergenic | 40.0% | |
| CTACCATACCTCTTAATCAG+AGG | - | chr1_1:29911775-29911794 | Msa0017900:CDS | 40.0% | |
| !! | CAGTCCGAATGTAGTTCTAA+AGG | - | chr1_1:29911802-29911821 | Msa0017900:exon | 40.0% |
| AATGCATGAGAGATGCGAGA+CGG | + | chr1_1:29907412-29907431 | None:intergenic | 45.0% | |
| ATTGTTGGAGCTGGTATTGC+TGG | - | chr1_1:29907791-29907810 | Msa0017900:intron | 45.0% | |
| ! | TTTGGCTCATACACTTGGCA+AGG | - | chr1_1:29907820-29907839 | Msa0017900:intron | 45.0% |
| CACAGACACATGTTGAACAC+CGG | - | chr1_1:29908191-29908210 | Msa0017900:intron | 45.0% | |
| CATGTTGAACACCGGATAAG+AGG | - | chr1_1:29908199-29908218 | Msa0017900:intron | 45.0% | |
| TACCACTGACACCTCTTATC+CGG | + | chr1_1:29908213-29908232 | None:intergenic | 45.0% | |
| TCTGCAGTAGGCTGTAATCA+CGG | - | chr1_1:29908308-29908327 | Msa0017900:intron | 45.0% | |
| TTGCAGCCTATACCTTTCAC+TGG | - | chr1_1:29908813-29908832 | Msa0017900:CDS | 45.0% | |
| ! | GATCAGCCAGTGAAAGGTAT+AGG | + | chr1_1:29908822-29908841 | None:intergenic | 45.0% |
| AGTGAGCCTGACAGAATTGT+TGG | - | chr1_1:29909061-29909080 | Msa0017900:intron | 45.0% | |
| TTAGTTGAACTCGGGCTTCA+AGG | - | chr1_1:29909115-29909134 | Msa0017900:intron | 45.0% | |
| ACACAAGACAGTTGTTAGGC+AGG | + | chr1_1:29909212-29909231 | None:intergenic | 45.0% | |
| ATTGATGCACAGCGAGTGTT+TGG | - | chr1_1:29909256-29909275 | Msa0017900:CDS | 45.0% | |
| !! | GGTTATGCCCTTTTCAAGGA+CGG | - | chr1_1:29909277-29909296 | Msa0017900:CDS | 45.0% |
| !! | GTTATGCCCTTTTCAAGGAC+GGG | - | chr1_1:29909278-29909297 | Msa0017900:CDS | 45.0% |
| TTCCAAGGGATAAGAGAGAC+GGG | + | chr1_1:29909311-29909330 | None:intergenic | 45.0% | |
| TCTGGCAGAAGCTTTCACAA+CGG | - | chr1_1:29909349-29909368 | Msa0017900:intron | 45.0% | |
| !! | ACAACGGGCGTTTTATTCAG+AGG | - | chr1_1:29909365-29909384 | Msa0017900:intron | 45.0% |
| TATTCAGAGGATGCGAGAGA+AGG | - | chr1_1:29909378-29909397 | Msa0017900:intron | 45.0% | |
| !! | CAACCCAAAGGGCATCTATA+TGG | + | chr1_1:29909606-29909625 | None:intergenic | 45.0% |
| TGTCCCCTTCTCTTCAAGTA+GGG | + | chr1_1:29909909-29909928 | None:intergenic | 45.0% | |
| TTGTCCCCTTCTCTTCAAGT+AGG | + | chr1_1:29909910-29909929 | None:intergenic | 45.0% | |
| GAAGAGAAGGGGACAATCAA+AGG | - | chr1_1:29909914-29909933 | Msa0017900:CDS | 45.0% | |
| TCGTTCTCTTTGCAACCCTA+AGG | - | chr1_1:29910024-29910043 | Msa0017900:intron | 45.0% | |
| GGCTCTTAGTCATGCATAGA+AGG | - | chr1_1:29910209-29910228 | Msa0017900:intron | 45.0% | |
| AATCACGGCCATGTCATACT+TGG | - | chr1_1:29910347-29910366 | Msa0017900:intron | 45.0% | |
| CAGTACAGAGATTCGTTGTC+TGG | - | chr1_1:29910403-29910422 | Msa0017900:intron | 45.0% | |
| ATAGAAGGAACCTTCGTTCC+AGG | + | chr1_1:29910437-29910456 | None:intergenic | 45.0% | |
| TGGAGAATGATTGGTACCTG+CGG | + | chr1_1:29910503-29910522 | None:intergenic | 45.0% | |
| AAAGGGTAAACGACATGCCA+AGG | + | chr1_1:29910548-29910567 | None:intergenic | 45.0% | |
| ATGCATCATAAAGCTCAGGG+GGG | + | chr1_1:29910620-29910639 | None:intergenic | 45.0% | |
| TATGTTGCCTTTGTCCACTG+CGG | + | chr1_1:29910649-29910668 | None:intergenic | 45.0% | |
| CAGTGGACAAAGGCAACATA+AGG | - | chr1_1:29910649-29910668 | Msa0017900:intron | 45.0% | |
| TCTGCTGGCATACTTCTGTT+CGG | + | chr1_1:29910681-29910700 | None:intergenic | 45.0% | |
| GAATGCATCTCCCATCAGTA+CGG | + | chr1_1:29910724-29910743 | None:intergenic | 45.0% | |
| AACATGCGTCATCCACTAAC+AGG | - | chr1_1:29910744-29910763 | Msa0017900:intron | 45.0% | |
| ACATGCGTCATCCACTAACA+GGG | - | chr1_1:29910745-29910764 | Msa0017900:intron | 45.0% | |
| CGTAGCATTGTCTGACATTG+TGG | - | chr1_1:29910779-29910798 | Msa0017900:intron | 45.0% | |
| AAAGTGTAGGTGCATCGTTC+AGG | + | chr1_1:29910836-29910855 | None:intergenic | 45.0% | |
| GTCATTCAATTTGCAGCCTG+TGG | - | chr1_1:29911064-29911083 | Msa0017900:intron | 45.0% | |
| !! | GTATTTATGGTGGATGCCAC+AGG | + | chr1_1:29911083-29911102 | None:intergenic | 45.0% |
| GGCTCCTGCCAATGTATTTA+TGG | + | chr1_1:29911096-29911115 | None:intergenic | 45.0% | |
| TTTCCTTCCTTGCTTCATCG+GGG | + | chr1_1:29911142-29911161 | None:intergenic | 45.0% | |
| ! | AGATCGGTCCTTCTGAGAAT+AGG | + | chr1_1:29911202-29911221 | None:intergenic | 45.0% |
| GGACCGATCTCTTTACTTTC+AGG | - | chr1_1:29911212-29911231 | Msa0017900:intron | 45.0% | |
| ACCCTCTTAGGTGAAGGAAA+TGG | + | chr1_1:29911314-29911333 | None:intergenic | 45.0% | |
| ATCTATTCCTAGGGTGCATC+TGG | - | chr1_1:29911441-29911460 | Msa0017900:CDS | 45.0% | |
| AATGATTCCAGATGCACCCT+AGG | + | chr1_1:29911451-29911470 | None:intergenic | 45.0% | |
| AATAAGCTGGAACAGTGGCA+GGG | + | chr1_1:29911515-29911534 | None:intergenic | 45.0% | |
| TAATAAGCTGGAACAGTGGC+AGG | + | chr1_1:29911516-29911535 | None:intergenic | 45.0% | |
| ! | TTAGTCTTTGCGGTTGCACT+TGG | - | chr1_1:29911897-29911916 | Msa0017900:five_prime_UTR | 45.0% |
| CAGCTAATAACATGCGTCCG+TGG | - | chr1_1:29907386-29907405 | Msa0017900:three_prime_UTR | 50.0% | |
| TCTCTCTCTCTCTGCCAAGT+TGG | + | chr1_1:29907498-29907517 | None:intergenic | 50.0% | |
| ! | GGTGATGACGACGGAGAATT+AGG | + | chr1_1:29907556-29907575 | None:intergenic | 50.0% |
| ATCACCACTGTCACCATCTC+CGG | - | chr1_1:29907570-29907589 | Msa0017900:three_prime_UTR | 50.0% | |
| !! | TGGTATTGCTGGTGCTGCTT+TGG | - | chr1_1:29907802-29907821 | Msa0017900:intron | 50.0% |
| ! | GCTGCTTTGGCTCATACACT+TGG | - | chr1_1:29907815-29907834 | Msa0017900:intron | 50.0% |
| CTGCAGTAGGCTGTAATCAC+GGG | - | chr1_1:29908309-29908328 | Msa0017900:intron | 50.0% | |
| !! | GTAATCACGGGCTTGTTGTG+TGG | - | chr1_1:29908321-29908340 | Msa0017900:intron | 50.0% |
| GTTGGAGAGTTGCTACAACC+TGG | - | chr1_1:29909079-29909098 | Msa0017900:intron | 50.0% | |
| TACCCGTCTCTCTTATCCCT+TGG | - | chr1_1:29909306-29909325 | Msa0017900:CDS | 50.0% | |
| CTGGCAGAAGCTTTCACAAC+GGG | - | chr1_1:29909350-29909369 | Msa0017900:intron | 50.0% | |
| ACTGGCTGTCCTTACTCCAT+AGG | + | chr1_1:29909721-29909740 | None:intergenic | 50.0% | |
| ACATGGCCGTGATTAGCACA+TGG | + | chr1_1:29910341-29910360 | None:intergenic | 50.0% | |
| ! | CGTTGTCTGGTTGATGTACC+TGG | - | chr1_1:29910416-29910435 | Msa0017900:intron | 50.0% |
| ! | GGTTGATGTACCTGGAACGA+AGG | - | chr1_1:29910424-29910443 | Msa0017900:intron | 50.0% |
| TGATGCATTCATAGCCGCAG+TGG | - | chr1_1:29910632-29910651 | Msa0017900:intron | 50.0% | |
| TTCATAGCCGCAGTGGACAA+AGG | - | chr1_1:29910639-29910658 | Msa0017900:intron | 50.0% | |
| CATGCGTCATCCACTAACAG+GGG | - | chr1_1:29910746-29910765 | Msa0017900:intron | 50.0% | |
| ATGCGTCATCCACTAACAGG+GGG | - | chr1_1:29910747-29910766 | Msa0017900:intron | 50.0% | |
| ATTGGCAGGAGCCCTTTACA+AGG | - | chr1_1:29911103-29911122 | Msa0017900:intron | 50.0% | |
| TTCCTTCCTTGCTTCATCGG+GGG | + | chr1_1:29911141-29911160 | None:intergenic | 50.0% | |
| ! | CTTCTGAGAATAGGCCTCCA+AGG | + | chr1_1:29911193-29911212 | None:intergenic | 50.0% |
| CTTGGAGGCCTATTCTCAGA+AGG | - | chr1_1:29911191-29911210 | Msa0017900:intron | 50.0% | |
| !! | GCTGTCGCAGTATTTGGTGT+TGG | - | chr1_1:29911275-29911294 | Msa0017900:intron | 50.0% |
| TTCCTTCACCTAAGAGGGTG+TGG | - | chr1_1:29911315-29911334 | Msa0017900:intron | 50.0% | |
| ATCCACACCCTCTTAGGTGA+AGG | + | chr1_1:29911320-29911339 | None:intergenic | 50.0% | |
| ! | TCACCTAAGAGGGTGTGGAT+TGG | - | chr1_1:29911320-29911339 | Msa0017900:intron | 50.0% |
| AATGTGCGCCGTGTACGTGT+TGG | + | chr1_1:29907328-29907347 | None:intergenic | 55.0% | |
| ! | TCTCTCTGCCAAGTTGGCAG+AGG | + | chr1_1:29907492-29907511 | None:intergenic | 55.0% |
| ! | GGTGACAGTGGTGATGACGA+CGG | + | chr1_1:29907565-29907584 | None:intergenic | 55.0% |
| CCATATCGGAGGAATCTCGC+CGG | + | chr1_1:29907592-29907611 | None:intergenic | 55.0% | |
| !! | AGCGTGACGAGTACTGATGC+CGG | - | chr1_1:29907725-29907744 | Msa0017900:CDS | 55.0% |
| !! | CACCGGATAAGAGGTGTCAG+TGG | - | chr1_1:29908208-29908227 | Msa0017900:intron | 55.0% |
| GGAGAGTTGCTACAACCTGG+TGG | - | chr1_1:29909082-29909101 | Msa0017900:intron | 55.0% | |
| AAAGACGACAGTTGCTCCGC+AGG | - | chr1_1:29910484-29910503 | Msa0017900:intron | 55.0% | |
| ATCAGTACGGCTCCAGGAGT+AGG | + | chr1_1:29910711-29910730 | None:intergenic | 55.0% | |
| TACTCCTGGAGCCGTACTGA+TGG | - | chr1_1:29910710-29910729 | Msa0017900:intron | 55.0% | |
| ! | ACTCCTGGAGCCGTACTGAT+GGG | - | chr1_1:29910711-29910730 | Msa0017900:intron | 55.0% |
| GCATCGTTCAGGTCACGCAT+AGG | + | chr1_1:29910825-29910844 | None:intergenic | 55.0% | |
| ATCCCCCGATGAAGCAAGGA+AGG | - | chr1_1:29911136-29911155 | Msa0017900:intron | 55.0% | |
| AAACCCTCGGCCCTTAAGCT+TGG | - | chr1_1:29911238-29911257 | Msa0017900:intron | 55.0% | |
| GAACCAAGCTTAAGGGCCGA+GGG | + | chr1_1:29911244-29911263 | None:intergenic | 55.0% | |
| AGAACCAAGCTTAAGGGCCG+AGG | + | chr1_1:29911245-29911264 | None:intergenic | 55.0% | |
| GCTCCAATCCACACCCTCTT+AGG | + | chr1_1:29911326-29911345 | None:intergenic | 55.0% | |
| GGGGGAGCTCTGTAATAAGC+TGG | + | chr1_1:29911528-29911547 | None:intergenic | 55.0% | |
| TGAGAGATGCGAGACGGCCA+CGG | + | chr1_1:29907406-29907425 | None:intergenic | 60.0% | |
| CCGGCGAGATTCCTCCGATA+TGG | - | chr1_1:29907589-29907608 | Msa0017900:three_prime_UTR | 60.0% | |
| GGAGTAGGACGAGGATCTGC+TGG | + | chr1_1:29910696-29910715 | None:intergenic | 60.0% | |
| GCAGATCCTCGTCCTACTCC+TGG | - | chr1_1:29910696-29910715 | Msa0017900:intron | 60.0% | |
| TCTCCCATCAGTACGGCTCC+AGG | + | chr1_1:29910717-29910736 | None:intergenic | 60.0% | |
| CGTCATCCACTAACAGGGGG+CGG | - | chr1_1:29910750-29910769 | Msa0017900:intron | 60.0% | |
| GTCATTCCGCCCCCTGTTAG+TGG | + | chr1_1:29910759-29910778 | None:intergenic | 60.0% | |
| GTGCATCCCCCGATGAAGCA+AGG | - | chr1_1:29911132-29911151 | Msa0017900:intron | 60.0% | |
| CTCGCCGGAGATGGTGACAG+TGG | + | chr1_1:29907577-29907596 | None:intergenic | 65.0% | |
| CGGAGGAATCTCGCCGGAGA+TGG | + | chr1_1:29907586-29907605 | None:intergenic | 65.0% | |
| ACGGCTCCAGGAGTAGGACG+AGG | + | chr1_1:29910705-29910724 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_1 | gene | 29907306 | 29911928 | 29907306 | ID=Msa0017900;Name=Msa0017900 |
| chr1_1 | mRNA | 29907306 | 29911928 | 29907306 | ID=Msa0017900-mRNA-1;Parent=Msa0017900;Name=Msa0017900-mRNA-1;_AED=0.08;_eAED=0.08;_QI=119|1|1|1|1|1|8|365|585 |
| chr1_1 | exon | 29907306 | 29907781 | 29907306 | ID=Msa0017900-mRNA-1:exon:9994;Parent=Msa0017900-mRNA-1 |
| chr1_1 | exon | 29907876 | 29908154 | 29907876 | ID=Msa0017900-mRNA-1:exon:9993;Parent=Msa0017900-mRNA-1 |
| chr1_1 | exon | 29908344 | 29908619 | 29908344 | ID=Msa0017900-mRNA-1:exon:9992;Parent=Msa0017900-mRNA-1 |
| chr1_1 | exon | 29908729 | 29908947 | 29908729 | ID=Msa0017900-mRNA-1:exon:9991;Parent=Msa0017900-mRNA-1 |
| chr1_1 | exon | 29909189 | 29909357 | 29909189 | ID=Msa0017900-mRNA-1:exon:9990;Parent=Msa0017900-mRNA-1 |
| chr1_1 | exon | 29909818 | 29909992 | 29909818 | ID=Msa0017900-mRNA-1:exon:9989;Parent=Msa0017900-mRNA-1 |
| chr1_1 | exon | 29910098 | 29910209 | 29910098 | ID=Msa0017900-mRNA-1:exon:9988;Parent=Msa0017900-mRNA-1 |
| chr1_1 | exon | 29911393 | 29911928 | 29911393 | ID=Msa0017900-mRNA-1:exon:9987;Parent=Msa0017900-mRNA-1 |
| chr1_1 | five_prime_UTR | 29911810 | 29911928 | 29911810 | ID=Msa0017900-mRNA-1:five_prime_utr;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29911393 | 29911809 | 29911393 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29910098 | 29910209 | 29910098 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29909818 | 29909992 | 29909818 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29909189 | 29909357 | 29909189 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29908729 | 29908947 | 29908729 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29908344 | 29908619 | 29908344 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29907876 | 29908154 | 29907876 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | CDS | 29907671 | 29907781 | 29907671 | ID=Msa0017900-mRNA-1:cds;Parent=Msa0017900-mRNA-1 |
| chr1_1 | three_prime_UTR | 29907306 | 29907670 | 29907306 | ID=Msa0017900-mRNA-1:three_prime_utr;Parent=Msa0017900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
