Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098140 | sp|O48651|SQE1_PANGI | 76.245 | 522 | 118 | 2 | 61 | 582 | 24 | 539 | 0.0 | 821 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098140 | Q2HY08 | 99.809 | 524 | 1 | 0 | 61 | 584 | 1 | 524 | 0.0 | 1067 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0098140 | 0.805041 | 1.616428e-49 | -8.615850e-47 |
| Msa0017900 | Msa0098140 | 0.986399 | 1.168716e-166 | -8.615850e-47 |
| Msa0038350 | Msa0098140 | 0.801395 | 9.188548e-49 | -8.615850e-47 |
| Msa0098140 | Msa0196130 | 0.823036 | 1.719057e-53 | -8.615850e-47 |
| Msa0098140 | Msa0200950 | 0.808913 | 2.452067e-50 | -8.615850e-47 |
| Msa0098140 | Msa0219290 | 0.800136 | 1.660020e-48 | -8.615850e-47 |
| Msa0098140 | Msa0238070 | 0.809458 | 1.873538e-50 | -8.615850e-47 |
| Msa0098140 | Msa0358170 | -0.824466 | 7.951283e-54 | -8.615850e-47 |
| Msa0098140 | Msa0380040 | -0.812484 | 4.141485e-51 | -8.615850e-47 |
| Msa0098140 | Msa0421780 | 0.810340 | 1.210399e-50 | -8.615850e-47 |
| Msa0098140 | Msa0442190 | -0.801298 | 9.617305e-49 | -8.615850e-47 |
| Msa0098140 | Msa0465790 | -0.806703 | 7.230828e-50 | -8.615850e-47 |
| Msa0098140 | Msa0475580 | -0.804773 | 1.839184e-49 | -8.615850e-47 |
| Msa0098140 | Msa0519220 | -0.800603 | 1.333963e-48 | -8.615850e-47 |
| Msa0098140 | Msa0547140 | -0.822783 | 1.969376e-53 | -8.615850e-47 |
| Msa0098140 | Msa0601850 | -0.815801 | 7.674955e-52 | -8.615850e-47 |
| Msa0098140 | Msa0716840 | -0.809822 | 1.564800e-50 | -8.615850e-47 |
| Msa0098140 | Msa0804120 | -0.802564 | 5.283594e-49 | -8.615850e-47 |
| Msa0098140 | Msa0819030 | 0.802672 | 5.020051e-49 | -8.615850e-47 |
| Msa0098140 | Msa0824680 | -0.828778 | 7.440875e-55 | -8.615850e-47 |
| Msa0098140 | Msa0842210 | -0.834520 | 2.859112e-56 | -8.615850e-47 |
| Msa0098140 | Msa0970570 | 0.806835 | 6.780620e-50 | -8.615850e-47 |
| Msa0098140 | Msa1111630 | -0.805599 | 1.234991e-49 | -8.615850e-47 |
| Msa0098140 | Msa1171870 | -0.812391 | 4.341885e-51 | -8.615850e-47 |
| Msa0098140 | Msa1187520 | -0.808368 | 3.206106e-50 | -8.615850e-47 |
| Msa0098140 | Msa1282920 | -0.805364 | 1.383242e-49 | -8.615850e-47 |
| Msa0098140 | Msa1306430 | -0.814135 | 1.797424e-51 | -8.615850e-47 |
| Msa0098140 | Msa1335860 | -0.801924 | 7.157079e-49 | -8.615850e-47 |
| Msa0098140 | Msa1453620 | -0.807744 | 4.352555e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098140 | MtrunA17_Chr1g0152061 | 97.913 | 527 | 7 | 2 | 61 | 584 | 1 | 526 | 0.0 | 1048 |
| Msa0098140 | MtrunA17_Chr3g0135201 | 82.692 | 520 | 86 | 1 | 61 | 580 | 2 | 517 | 0.0 | 883 |
| Msa0098140 | MtrunA17_Chr4g0049291 | 78.119 | 521 | 112 | 2 | 64 | 582 | 5 | 525 | 0.0 | 805 |
| Msa0098140 | MtrunA17_Chr6g0463581 | 73.367 | 199 | 53 | 0 | 384 | 582 | 1 | 199 | 4.41e-101 | 304 |
| Msa0098140 | MtrunA17_Chr6g0463781 | 73.656 | 186 | 49 | 0 | 363 | 548 | 20 | 205 | 9.39e-96 | 291 |
| Msa0098140 | MtrunA17_Chr6g0463601 | 63.905 | 169 | 59 | 2 | 67 | 233 | 9 | 177 | 2.49e-66 | 214 |
| Msa0098140 | MtrunA17_Chr6g0463751 | 84.211 | 95 | 15 | 0 | 139 | 233 | 38 | 132 | 1.40e-54 | 181 |
| Msa0098140 | MtrunA17_Chr5g0411591 | 79.762 | 84 | 17 | 0 | 457 | 540 | 35 | 118 | 3.15e-38 | 137 |
| Msa0098140 | MtrunA17_Chr7g0240231 | 77.381 | 84 | 19 | 0 | 455 | 538 | 33 | 116 | 2.55e-36 | 131 |
| Msa0098140 | MtrunA17_Chr6g0463591 | 73.750 | 80 | 20 | 1 | 291 | 369 | 6 | 85 | 3.99e-33 | 121 |
| Msa0098140 | MtrunA17_Chr6g0463771 | 61.856 | 97 | 36 | 1 | 290 | 385 | 11 | 107 | 1.58e-32 | 122 |
| Msa0098140 | MtrunA17_Chr6g0463761 | 70.690 | 58 | 17 | 0 | 234 | 291 | 24 | 81 | 2.90e-22 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098140 | AT1G58440.1 | 76.726 | 507 | 111 | 3 | 78 | 581 | 23 | 525 | 0.0 | 809 |
| Msa0098140 | AT4G37760.1 | 74.263 | 509 | 121 | 2 | 70 | 578 | 17 | 515 | 0.0 | 765 |
| Msa0098140 | AT2G22830.1 | 72.994 | 511 | 135 | 2 | 70 | 580 | 78 | 585 | 0.0 | 761 |
| Msa0098140 | AT5G24150.1 | 50.102 | 489 | 239 | 3 | 93 | 578 | 23 | 509 | 2.54e-177 | 511 |
| Msa0098140 | AT5G24160.1 | 49.896 | 481 | 236 | 4 | 103 | 578 | 30 | 510 | 9.63e-172 | 498 |
| Msa0098140 | AT5G24150.2 | 50.321 | 467 | 227 | 3 | 93 | 556 | 23 | 487 | 5.51e-168 | 487 |
| Msa0098140 | AT5G24140.1 | 44.828 | 522 | 264 | 6 | 64 | 577 | 5 | 510 | 4.07e-161 | 470 |
| Msa0098140 | AT5G24160.3 | 48.499 | 433 | 219 | 3 | 150 | 578 | 1 | 433 | 1.56e-149 | 438 |
| Msa0098140 | AT5G24160.2 | 51.117 | 358 | 170 | 4 | 103 | 455 | 30 | 387 | 2.69e-125 | 374 |
| Msa0098140 | AT5G24155.3 | 49.438 | 89 | 43 | 1 | 93 | 181 | 25 | 111 | 5.66e-21 | 89.0 |
| Msa0098140 | AT5G24155.2 | 51.807 | 83 | 38 | 1 | 93 | 175 | 25 | 105 | 1.25e-20 | 87.8 |
| Msa0098140 | AT5G24155.1 | 51.807 | 83 | 38 | 1 | 93 | 175 | 25 | 105 | 1.66e-20 | 87.8 |
Find 170 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTCCTTCGGCCTTAATTA+TGG | 0.175341 | 1_3:-4086576 | None:intergenic |
| CGAATCTCTGTACTGCTTAT+AGG | 0.207749 | 1_3:-4085496 | None:intergenic |
| TTCTTTGCTGTCGCAGTATT+TGG | 0.207797 | 1_3:+4086370 | Msa0098140:CDS |
| GGCTCCTGCCAATGTATTTA+TGG | 0.220414 | 1_3:-4086194 | None:intergenic |
| GGACCGATCTCTTTACTTTC+AGG | 0.235514 | 1_3:+4086313 | Msa0098140:CDS |
| TACCTTACGCAAGGTATAAA+AGG | 0.241334 | 1_3:-4085972 | None:intergenic |
| ATTCCTTCGGCCTTAATTAT+GGG | 0.317534 | 1_3:-4086575 | None:intergenic |
| GGTGATGACGACGGAGAATT+AGG | 0.317603 | 1_3:-4082601 | None:intergenic |
| TTTCATCAATTTCTCAAGAA+TGG | 0.317621 | 1_3:-4086704 | None:intergenic |
| GCTCCAATCCACACCCTCTT+AGG | 0.317731 | 1_3:-4086424 | None:intergenic |
| AACATGCGTCATCCACTAAC+AGG | 0.321463 | 1_3:+4085845 | Msa0098140:CDS |
| ATTTCCTTCCTTGCTTCATC+GGG | 0.330002 | 1_3:-4086241 | None:intergenic |
| CATTTCCTTCCTTGCTTCAT+CGG | 0.342711 | 1_3:-4086242 | None:intergenic |
| ATCTATTCCTAGGGTGCATC+TGG | 0.355582 | 1_3:+4086542 | Msa0098140:intron |
| ATTGTTGGAGCTGGTATTGC+TGG | 0.356020 | 1_3:+4082839 | Msa0098140:CDS |
| TATTCTTTGTAGTTTGTAAC+TGG | 0.364286 | 1_3:+4086770 | Msa0098140:three_prime_UTR |
| TGGTATTGCTGGTGCTGCTT+TGG | 0.375955 | 1_3:+4082850 | Msa0098140:CDS |
| ATTTGATATATTAGTCTTTG+CGG | 0.391219 | 1_3:+4086985 | Msa0098140:three_prime_UTR |
| ATTGATGCACAACGAGTGTT+TGG | 0.393316 | 1_3:+4084368 | Msa0098140:CDS |
| ATCATCATAATTCCTCTTAC+CGG | 0.393754 | 1_3:-4082729 | None:intergenic |
| ATAGAAGGAACCTTCGTTCC+AGG | 0.396833 | 1_3:-4085535 | None:intergenic |
| CTTATAGGATAGAAAAGAAT+TGG | 0.397306 | 1_3:-4085481 | None:intergenic |
| TTCATCAATTTCTCAAGAAT+GGG | 0.398594 | 1_3:-4086703 | None:intergenic |
| CCGGCGAGATTCCTCCGATA+TGG | 0.403844 | 1_3:+4082637 | Msa0098140:CDS |
| TTAGTTGAACTCGGGCTTCA+AGG | 0.404149 | 1_3:+4084227 | Msa0098140:CDS |
| CAGTACAGAGATTCGTTGTC+TGG | 0.427940 | 1_3:+4085504 | Msa0098140:CDS |
| AGTGAGCCTGACAGAATTGT+TGG | 0.434089 | 1_3:+4084173 | Msa0098140:CDS |
| TAATAAGCTGGAACAGTGGC+AGG | 0.434401 | 1_3:-4086614 | None:intergenic |
| ATATCACCGTTTGAAATAGA+AGG | 0.439792 | 1_3:-4085550 | None:intergenic |
| TACCATTTCCTTCACCTAAG+AGG | 0.439865 | 1_3:+4086410 | Msa0098140:CDS |
| TACTTTCAGGATTAAACCCT+CGG | 0.441584 | 1_3:+4086326 | Msa0098140:CDS |
| GCTGCTTTGGCTCATACACT+TGG | 0.443989 | 1_3:+4082863 | Msa0098140:CDS |
| AAATGGAGAACCAAGCTTAA+GGG | 0.444726 | 1_3:-4086349 | None:intergenic |
| AATCACGGCCATGTCATACT+TGG | 0.445861 | 1_3:+4085448 | Msa0098140:CDS |
| ATACTGCGACAGCAAAGAAA+TGG | 0.451961 | 1_3:-4086366 | None:intergenic |
| GAAATGGAGAACCAAGCTTA+AGG | 0.452126 | 1_3:-4086350 | None:intergenic |
| TACTCGTCTCTCTTATCCCT+TGG | 0.452655 | 1_3:+4084418 | Msa0098140:CDS |
| ACTCTTTGAAAACAAGAGAA+AGG | 0.453979 | 1_3:-4082411 | None:intergenic |
| CCTCTTACCATTGTTTGTGA+TGG | 0.454106 | 1_3:+4085090 | Msa0098140:CDS |
| ACTAATATATCAAATCGAAT+AGG | 0.454556 | 1_3:-4086977 | None:intergenic |
| ATACAAGAATAAAGATGGTC+AGG | 0.454757 | 1_3:+4085050 | Msa0098140:CDS |
| TTCCTTCACCTAAGAGGGTG+TGG | 0.457909 | 1_3:+4086416 | Msa0098140:CDS |
| CGTTGTCTGGTTGATGTACC+TGG | 0.458380 | 1_3:+4085517 | Msa0098140:CDS |
| GATATGGATCTATACAATAT+CGG | 0.460081 | 1_3:+4082653 | Msa0098140:CDS |
| TTAGTCTTTGCGGTTGCACT+TGG | 0.461555 | 1_3:+4086995 | Msa0098140:three_prime_UTR |
| GATGCTGATGTTATCATTGT+TGG | 0.461594 | 1_3:+4082824 | Msa0098140:CDS |
| ACTGATAAACTCTGATTAAG+AGG | 0.466374 | 1_3:-4086881 | None:intergenic |
| CTGGCAGAAGCTTTCACAAT+GGG | 0.467158 | 1_3:+4084462 | Msa0098140:CDS |
| TTTGATTATCTGAGCCTTGG+AGG | 0.468151 | 1_3:+4086277 | Msa0098140:CDS |
| GAGGTATGGTAGTTATAGTC+TGG | 0.469620 | 1_3:-4086862 | None:intergenic |
| AAGGAAATGGTAATAGTAAA+CGG | 0.471509 | 1_3:-4086399 | None:intergenic |
| TGCACTGAAAACCTTGTAAA+GGG | 0.475652 | 1_3:-4086215 | None:intergenic |
| ATGAATGCATCATAAAGCTC+AGG | 0.476865 | 1_3:-4085722 | None:intergenic |
| AACTCTCCAACAATTCTGTC+AGG | 0.479622 | 1_3:-4084179 | None:intergenic |
| CTAGCCTTTAGAACTACATT+CGG | 0.480033 | 1_3:-4086904 | None:intergenic |
| ACCATTTCCTTCACCTAAGA+GGG | 0.482569 | 1_3:+4086411 | Msa0098140:CDS |
| AAAGTGTAGGTGCATCGTTC+AGG | 0.483815 | 1_3:-4085934 | None:intergenic |
| GCAGATCCTCGTCCTACTCC+TGG | 0.487082 | 1_3:+4085797 | Msa0098140:CDS |
| AGATCGGTCCTTCTGAGAAT+AGG | 0.487513 | 1_3:-4086300 | None:intergenic |
| ATTCAATCGGAGAAACTTAA+CGG | 0.487604 | 1_3:+4082800 | Msa0098140:CDS |
| AAACCCTCGGCCCTTAAGCT+TGG | 0.488521 | 1_3:+4086339 | Msa0098140:CDS |
| AACTAATTTGAGATAGCCAC+CGG | 0.488708 | 1_3:-4084210 | None:intergenic |
| AAACATCTGTCGAATTCCTT+CGG | 0.488723 | 1_3:-4086588 | None:intergenic |
| TCGTTCTCTTTGCAACCCTA+AGG | 0.492478 | 1_3:+4085131 | Msa0098140:CDS |
| AAGTTTCACTCAGATGTCTC+TGG | 0.495602 | 1_3:+4084443 | Msa0098140:CDS |
| TTGTCCCCTTCTCTTCAAGT+AGG | 0.497068 | 1_3:-4085014 | None:intergenic |
| TTTCTCCGATTGAATATCTC+CGG | 0.497445 | 1_3:-4082792 | None:intergenic |
| CAGTCCGAATGTAGTTCTAA+AGG | 0.501023 | 1_3:+4086900 | Msa0098140:three_prime_UTR |
| ATGCACTGAAAACCTTGTAA+AGG | 0.506837 | 1_3:-4086216 | None:intergenic |
| TCTCCCATCAGTACGGCTCC+AGG | 0.507821 | 1_3:-4085815 | None:intergenic |
| AGTTATAGTCTGGTATGTAA+TGG | 0.508101 | 1_3:-4086852 | None:intergenic |
| GGAGTAGGACGAGGATCTGC+TGG | 0.509133 | 1_3:-4085794 | None:intergenic |
| GATATTGTATAGATCCATAT+CGG | 0.509930 | 1_3:-4082651 | None:intergenic |
| TACTCCTGGAGCCGTACTGA+TGG | 0.510278 | 1_3:+4085811 | Msa0098140:CDS |
| CCATCACAAACAATGGTAAG+AGG | 0.512237 | 1_3:-4085090 | None:intergenic |
| TCCACCATAAATACATTGGC+AGG | 0.514312 | 1_3:+4086190 | Msa0098140:CDS |
| TCTGCTGGCATACTTCTGTT+CGG | 0.516285 | 1_3:-4085779 | None:intergenic |
| AAGGTTCCTTCTATTTCAAA+CGG | 0.519651 | 1_3:+4085544 | Msa0098140:CDS |
| ACCAACGTTAAAACTCTTGA+GGG | 0.526525 | 1_3:+4086933 | Msa0098140:three_prime_UTR |
| GTGCAATACAAGAATAAAGA+TGG | 0.529953 | 1_3:+4085045 | Msa0098140:CDS |
| AATTTCCCTACTTGAAGAGA+AGG | 0.530382 | 1_3:+4085008 | Msa0098140:CDS |
| AAAGACGACAGTTGCTCCGC+AGG | 0.531503 | 1_3:+4085585 | Msa0098140:CDS |
| ACCCTCTTAGGTGAAGGAAA+TGG | 0.532098 | 1_3:-4086412 | None:intergenic |
| GATGTTATCATTGTTGGAGC+TGG | 0.533082 | 1_3:+4082830 | Msa0098140:CDS |
| CAGTGGACAAAGGCAACATA+AGG | 0.534627 | 1_3:+4085750 | Msa0098140:CDS |
| TCACCTAAGAGGGTGTGGAT+TGG | 0.535303 | 1_3:+4086421 | Msa0098140:CDS |
| GAAGAGAAGGGGACAATCAA+AGG | 0.536837 | 1_3:+4085021 | Msa0098140:CDS |
| TGGATCTATACAATATCGGT+TGG | 0.539153 | 1_3:+4082657 | Msa0098140:CDS |
| TTTAGTGTAAATATGGAGCA+AGG | 0.539715 | 1_3:+4084979 | Msa0098140:intron |
| TGTCCCCTTCTCTTCAAGTA+GGG | 0.539941 | 1_3:-4085013 | None:intergenic |
| CGGAGGAATCTCGCCGGCGA+TGG | 0.540161 | 1_3:-4082631 | None:intergenic |
| TCAGATAATCAAAACAAGCT+TGG | 0.542781 | 1_3:-4086267 | None:intergenic |
| ATTTCCCTACTTGAAGAGAA+GGG | 0.543066 | 1_3:+4085009 | Msa0098140:CDS |
| GTATTTATGGTGGATGCCAC+AGG | 0.543363 | 1_3:-4086181 | None:intergenic |
| GCTGTCGCAGTATTTGGTGT+TGG | 0.545682 | 1_3:+4086376 | Msa0098140:CDS |
| TCTCTCTGCCAAGTTGGCAG+AGG | 0.548300 | 1_3:-4082539 | None:intergenic |
| ATCTCAAATTAGTTGAACTC+GGG | 0.550747 | 1_3:+4084219 | Msa0098140:CDS |
| CTGCTTTGGCTCATACACTT+GGG | 0.551204 | 1_3:+4082864 | Msa0098140:CDS |
| TAAACTCTGATTAAGAGGTA+TGG | 0.555691 | 1_3:-4086876 | None:intergenic |
| ATTGGCAGGAGCCCTTTACA+AGG | 0.556237 | 1_3:+4086204 | Msa0098140:CDS |
| AGAACCAAGCTTAAGGGCCG+AGG | 0.556784 | 1_3:-4086343 | None:intergenic |
| GCAAGGTATAAAAGGATTCG+AGG | 0.560224 | 1_3:-4085964 | None:intergenic |
| TTTGGATGTAACAGAAAGTG+AGG | 0.561327 | 1_3:-4082503 | None:intergenic |
| AGACTTATCCAACACGTACA+CGG | 0.566223 | 1_3:+4082371 | Msa0098140:five_prime_UTR |
| TGAGAGATGCGAGACGGCCA+CGG | 0.569024 | 1_3:-4082454 | None:intergenic |
| TTCCTTCCTTGCTTCATCGG+GGG | 0.569233 | 1_3:-4086239 | None:intergenic |
| TATCTCAAATTAGTTGAACT+CGG | 0.569550 | 1_3:+4084218 | Msa0098140:CDS |
| CGTAGCATTGTCTGACATTG+TGG | 0.569995 | 1_3:+4085880 | Msa0098140:CDS |
| TATTCAGAGGATGCGAGAGA+AGG | 0.570757 | 1_3:+4084490 | Msa0098140:CDS |
| ACTCCTGGAGCCGTACTGAT+GGG | 0.575316 | 1_3:+4085812 | Msa0098140:CDS |
| CTTCTGAGAATAGGCCTCCA+AGG | 0.578133 | 1_3:-4086291 | None:intergenic |
| TTACCCATAATTAAGGCCGA+AGG | 0.579355 | 1_3:+4086572 | Msa0098140:CDS |
| ATCACCACTGTCACCATCGC+CGG | 0.579385 | 1_3:+4082618 | Msa0098140:CDS |
| CACCAACGTTAAAACTCTTG+AGG | 0.579621 | 1_3:+4086932 | Msa0098140:three_prime_UTR |
| ATCCACACCCTCTTAGGTGA+AGG | 0.580520 | 1_3:-4086418 | None:intergenic |
| GTTGGAGAGTTGCTACAACC+CGG | 0.585930 | 1_3:+4084191 | Msa0098140:CDS |
| ATCAGTACGGCTCCAGGAGT+AGG | 0.585947 | 1_3:-4085809 | None:intergenic |
| GTGTTTAACTGCAGATTGTG+TGG | 0.593192 | 1_3:+4084340 | Msa0098140:intron |
| AAATGATTACTTGGGAAGTG+AGG | 0.593662 | 1_3:-4084516 | None:intergenic |
| GAATGCATCTCCCATCAGTA+CGG | 0.593708 | 1_3:-4085822 | None:intergenic |
| AATCCTGAAAGTAAAGAGAT+CGG | 0.595714 | 1_3:-4086316 | None:intergenic |
| TGATGCCGGAGATATTCAAT+CGG | 0.599090 | 1_3:+4082787 | Msa0098140:CDS |
| TTTCCCTACTTGAAGAGAAG+GGG | 0.599252 | 1_3:+4085010 | Msa0098140:CDS |
| TCGAGGTATTTGCAAAGTGT+AGG | 0.602201 | 1_3:-4085947 | None:intergenic |
| GAACCAAGCTTAAGGGCCGA+GGG | 0.602741 | 1_3:-4086342 | None:intergenic |
| TTCATAGCCGCAGTGGACAA+AGG | 0.603410 | 1_3:+4085740 | Msa0098140:CDS |
| TTTGGCTCATACACTTGGGA+AGG | 0.603577 | 1_3:+4082868 | Msa0098140:CDS |
| CTTGGAGGCCTATTCTCAGA+AGG | 0.605501 | 1_3:+4086292 | Msa0098140:CDS |
| TTTCCTTCCTTGCTTCATCG+GGG | 0.610138 | 1_3:-4086240 | None:intergenic |
| AGCGTGACGAGTACTGATGC+CGG | 0.610394 | 1_3:+4082773 | Msa0098140:CDS |
| TGAATGCATCATAAAGCTCA+GGG | 0.611808 | 1_3:-4085721 | None:intergenic |
| CTCGCCGGCGATGGTGACAG+TGG | 0.612231 | 1_3:-4082622 | None:intergenic |
| AATTAAGCCAACAAAACAAG+AGG | 0.613978 | 1_3:-4085398 | None:intergenic |
| GGCATCCACCATAAATACAT+TGG | 0.614534 | 1_3:+4086186 | Msa0098140:CDS |
| GGTTGATGTACCTGGAACGA+AGG | 0.615232 | 1_3:+4085525 | Msa0098140:CDS |
| TTTCAAAATGCATTTACTGG+GGG | 0.616100 | 1_3:-4086644 | None:intergenic |
| ACATGCGTCATCCACTAACA+GGG | 0.618189 | 1_3:+4085846 | Msa0098140:CDS |
| TCTGTAATAAGCTGGAACAG+TGG | 0.618702 | 1_3:-4086618 | None:intergenic |
| AACAGAAAGTGAGGGAAAGT+AGG | 0.620174 | 1_3:-4082494 | None:intergenic |
| GGATAGAAAAGAATTGGCGA+AGG | 0.622799 | 1_3:-4085475 | None:intergenic |
| CAGCTAATAACATGCGTCCG+TGG | 0.622861 | 1_3:+4082437 | Msa0098140:five_prime_UTR |
| GCATCGTTCAGGTCACGCAT+AGG | 0.624882 | 1_3:-4085923 | None:intergenic |
| TCCTGCCAATGTATTTATGG+TGG | 0.628205 | 1_3:-4086191 | None:intergenic |
| GAAACAGCCATCACAAACAA+TGG | 0.630963 | 1_3:-4085097 | None:intergenic |
| CACAATGTCAGACAATGCTA+CGG | 0.631265 | 1_3:-4085879 | None:intergenic |
| AATGCATCATAAAGCTCAGG+GGG | 0.632643 | 1_3:-4085719 | None:intergenic |
| GAACTTCCATGTGCTAATCA+CGG | 0.642666 | 1_3:+4085433 | Msa0098140:CDS |
| TGATGCATTCATAGCCGCAG+TGG | 0.644164 | 1_3:+4085733 | Msa0098140:CDS |
| TTGGATGTAACAGAAAGTGA+GGG | 0.649729 | 1_3:-4082502 | None:intergenic |
| AATGTGCGCCGTGTACGTGT+TGG | 0.650046 | 1_3:-4082379 | None:intergenic |
| ACGGCTCCAGGAGTAGGACG+AGG | 0.651326 | 1_3:-4085803 | None:intergenic |
| AGACAACATTACCTTACGCA+AGG | 0.652245 | 1_3:-4085981 | None:intergenic |
| AATAAGCTGGAACAGTGGCA+GGG | 0.653392 | 1_3:-4086613 | None:intergenic |
| ATTAAGCCAACAAAACAAGA+GGG | 0.654720 | 1_3:-4085397 | None:intergenic |
| TCTGGCAGAAGCTTTCACAA+TGG | 0.660313 | 1_3:+4084461 | Msa0098140:CDS |
| TATGTTGCCTTTGTCCACTG+CGG | 0.661247 | 1_3:-4085747 | None:intergenic |
| AAGGATCTCCAAGTATGACA+TGG | 0.662022 | 1_3:-4085456 | None:intergenic |
| AATGCATGAGAGATGCGAGA+CGG | 0.663480 | 1_3:-4082460 | None:intergenic |
| CCATATCGGAGGAATCTCGC+CGG | 0.670557 | 1_3:-4082637 | None:intergenic |
| TGATGTGAATGACAAGGTGA+AGG | 0.671331 | 1_3:+4082748 | Msa0098140:CDS |
| ACATGGCCGTGATTAGCACA+TGG | 0.674486 | 1_3:-4085439 | None:intergenic |
| ATTGTATAGATCCATATCGG+AGG | 0.691081 | 1_3:-4082648 | None:intergenic |
| ATGCGTCATCCACTAACAGG+GGG | 0.711944 | 1_3:+4085848 | Msa0098140:CDS |
| CATGCGTCATCCACTAACAG+GGG | 0.711975 | 1_3:+4085847 | Msa0098140:CDS |
| ACTAATTTGAGATAGCCACC+GGG | 0.721477 | 1_3:-4084209 | None:intergenic |
| TTATGATGATGTGAATGACA+AGG | 0.730862 | 1_3:+4082742 | Msa0098140:CDS |
| GAATGCATCATAAAGCTCAG+GGG | 0.736361 | 1_3:-4085720 | None:intergenic |
| GGAGAGTTGCTACAACCCGG+TGG | 0.739001 | 1_3:+4084194 | Msa0098140:CDS |
| ATGCATCATAAAGCTCAGGG+GGG | 0.790354 | 1_3:-4085718 | None:intergenic |
| GGTGACAGTGGTGATGACGA+CGG | 0.795419 | 1_3:-4082610 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAAATATTATGCAATAT+AGG | + | chr1_3:4084115-4084134 | Msa0098140:intron | 10.0% |
| !! | AAAAAATAATTTATAGAACT+TGG | - | chr1_3:4085624-4085643 | None:intergenic | 10.0% |
| !! | TGAATATTGAATATTGAATA+TGG | + | chr1_3:4082950-4082969 | Msa0098140:intron | 15.0% |
| !! | TTGTAATAATTTGAGAAAAT+GGG | + | chr1_3:4083174-4083193 | Msa0098140:intron | 15.0% |
| !!! | TTATTTTGTTTTACTTTCAT+TGG | - | chr1_3:4083286-4083305 | None:intergenic | 15.0% |
| !!! | TTAAAAAGCTTTATATATTG+TGG | + | chr1_3:4083506-4083525 | Msa0098140:intron | 15.0% |
| !!! | TAAAAAGCTTTATATATTGT+GGG | + | chr1_3:4083507-4083526 | Msa0098140:intron | 15.0% |
| !!! | AACAACTTTATTTTATCTTT+TGG | - | chr1_3:4083609-4083628 | None:intergenic | 15.0% |
| !! | TTAAAAAATATCAACCTAAA+GGG | - | chr1_3:4084720-4084739 | None:intergenic | 15.0% |
| !! | ATTAAAAAATATCAACCTAA+AGG | - | chr1_3:4084721-4084740 | None:intergenic | 15.0% |
| !! | TACACTAAAAAAATTGAAAA+AGG | - | chr1_3:4084968-4084987 | None:intergenic | 15.0% |
| !!! | CAATTTTTTTAGTGTAAATA+TGG | + | chr1_3:4084972-4084991 | Msa0098140:intron | 15.0% |
| !! | AAATAACAATCAATGAATTA+CGG | - | chr1_3:4085253-4085272 | None:intergenic | 15.0% |
| !!! | TAATTCATTGATTGTTATTT+TGG | + | chr1_3:4085253-4085272 | Msa0098140:intron | 15.0% |
| !!! | TATAAATTATTTTTTAGCCT+TGG | + | chr1_3:4085629-4085648 | Msa0098140:intron | 15.0% |
| !! | AAACTGAAATAAAAATAATG+CGG | - | chr1_3:4086473-4086492 | None:intergenic | 15.0% |
| !!! | TTATACAATTTGATTTTCTC+CGG | + | chr1_3:4082710-4082729 | Msa0098140:CDS | 20.0% |
| !!! | TATTTTTTAAATTGCGTTTG+TGG | + | chr1_3:4082917-4082936 | Msa0098140:intron | 20.0% |
| !!! | ATAAAGTTGATATAGCTAAA+AGG | + | chr1_3:4083020-4083039 | Msa0098140:intron | 20.0% |
| !!! | AAATTTTGAATCTATTTGAG+AGG | + | chr1_3:4083086-4083105 | Msa0098140:intron | 20.0% |
| !! | CTTGTAATAATTTGAGAAAA+TGG | + | chr1_3:4083173-4083192 | Msa0098140:intron | 20.0% |
| !! | ACACAAACAATATATATTAC+TGG | - | chr1_3:4083903-4083922 | None:intergenic | 20.0% |
| !! | ACACAAACAATATATATTAC+TGG | - | chr1_3:4083903-4083922 | None:intergenic | 20.0% |
| !! | AAATAATACTCAACACAAAA+AGG | - | chr1_3:4084062-4084081 | None:intergenic | 20.0% |
| !! | AAATATTATGCAATATAGGA+TGG | + | chr1_3:4084119-4084138 | Msa0098140:intron | 20.0% |
| !! | CATATATTATACATTCACAA+GGG | - | chr1_3:4084545-4084564 | None:intergenic | 20.0% |
| !! | AACTTTCAATAGAACTAATT+TGG | - | chr1_3:4084762-4084781 | None:intergenic | 20.0% |
| !! | TTATGAGAATTTATATCAAC+TGG | - | chr1_3:4084845-4084864 | None:intergenic | 20.0% |
| !!! | AATTTTTTGTTTAGTAGTTG+TGG | - | chr1_3:4085229-4085248 | None:intergenic | 20.0% |
| !!! | AATTCTACTCTGAAATAAAA+GGG | - | chr1_3:4085666-4085685 | None:intergenic | 20.0% |
| !!! | AAATTCTACTCTGAAATAAA+AGG | - | chr1_3:4085667-4085686 | None:intergenic | 20.0% |
| !!! | AATCATTTTACCCATAATTA+AGG | + | chr1_3:4086565-4086584 | Msa0098140:CDS | 20.0% |
| !!! | TTTTTCAAAATGCATTTACT+GGG | - | chr1_3:4086649-4086668 | None:intergenic | 20.0% |
| !!! | TTTTTTCAAAATGCATTTAC+TGG | - | chr1_3:4086650-4086669 | None:intergenic | 20.0% |
| !!! | TTCAATTTTCTAAAATAGCA+AGG | - | chr1_3:4086831-4086850 | None:intergenic | 20.0% |
| !! | ACTAATATATCAAATCGAAT+AGG | - | chr1_3:4086980-4086999 | None:intergenic | 20.0% |
| !!! | ATTTGATATATTAGTCTTTG+CGG | + | chr1_3:4086985-4087004 | Msa0098140:three_prime_UTR | 20.0% |
| ! | GATATTGTATAGATCCATAT+CGG | - | chr1_3:4082654-4082673 | None:intergenic | 25.0% |
| ! | GATATGGATCTATACAATAT+CGG | + | chr1_3:4082653-4082672 | Msa0098140:CDS | 25.0% |
| !! | AGTGATTCATAGTTTTTCAT+TGG | - | chr1_3:4083138-4083157 | None:intergenic | 25.0% |
| !! | ATTCTGATGTTGACTAATAT+TGG | + | chr1_3:4083443-4083462 | Msa0098140:intron | 25.0% |
| !! | ATCTTTTATATATACACCTC+AGG | + | chr1_3:4083477-4083496 | Msa0098140:intron | 25.0% |
| !! | AGCTTTTTAATAAAATCCTG+AGG | - | chr1_3:4083496-4083515 | None:intergenic | 25.0% |
| !!! | GCTATTTTCATAAGATATCT+TGG | + | chr1_3:4083645-4083664 | Msa0098140:intron | 25.0% |
| ! | AAGATATCTTGGAGAATTTA+TGG | + | chr1_3:4083656-4083675 | Msa0098140:intron | 25.0% |
| ! | CAAAGTTTAATTCTCTTATG+TGG | - | chr1_3:4083832-4083851 | None:intergenic | 25.0% |
| ! | AAGAGAATTAAACTTTGTGA+TGG | + | chr1_3:4083835-4083854 | Msa0098140:intron | 25.0% |
| ! | AGAGAATTAAACTTTGTGAT+GGG | + | chr1_3:4083836-4083855 | Msa0098140:intron | 25.0% |
| ! | TATCTCAAATTAGTTGAACT+CGG | + | chr1_3:4084218-4084237 | Msa0098140:CDS | 25.0% |
| ! | GCATATATTATACATTCACA+AGG | - | chr1_3:4084546-4084565 | None:intergenic | 25.0% |
| ! | GAATGTATAATATATGCTTG+TGG | + | chr1_3:4084549-4084568 | Msa0098140:intron | 25.0% |
| ! | ATGACAAAAAGAAACTAGTA+AGG | - | chr1_3:4084580-4084599 | None:intergenic | 25.0% |
| ! | TAAATGTAGCAATGAATAAC+AGG | - | chr1_3:4084637-4084656 | None:intergenic | 25.0% |
| ! | TGTTATTCATTGCTACATTT+AGG | + | chr1_3:4084636-4084655 | Msa0098140:intron | 25.0% |
| ! | GAATATATCTTCAGATCAAT+TGG | - | chr1_3:4084916-4084935 | None:intergenic | 25.0% |
| !!! | GTTATTTTGGTTTACAAAAG+TGG | + | chr1_3:4085266-4085285 | Msa0098140:intron | 25.0% |
| ! | CTTATAGGATAGAAAAGAAT+TGG | - | chr1_3:4085484-4085503 | None:intergenic | 25.0% |
| ! | AACTTAAACAAAACCAAGAA+AGG | - | chr1_3:4086008-4086027 | None:intergenic | 25.0% |
| ! | AAGGAAATGGTAATAGTAAA+CGG | - | chr1_3:4086402-4086421 | None:intergenic | 25.0% |
| ! | AACCAAATTTATCTATTCCT+AGG | + | chr1_3:4086532-4086551 | Msa0098140:intron | 25.0% |
| ! | ACCAAATTTATCTATTCCTA+GGG | + | chr1_3:4086533-4086552 | Msa0098140:intron | 25.0% |
| !! | TTTTCAAAATGCATTTACTG+GGG | - | chr1_3:4086648-4086667 | None:intergenic | 25.0% |
| ! | TTCATCAATTTCTCAAGAAT+GGG | - | chr1_3:4086706-4086725 | None:intergenic | 25.0% |
| ! | TTTCATCAATTTCTCAAGAA+TGG | - | chr1_3:4086707-4086726 | None:intergenic | 25.0% |
| !! | TATTCTTTGTAGTTTGTAAC+TGG | + | chr1_3:4086770-4086789 | Msa0098140:three_prime_UTR | 25.0% |
| ! | ACTCTTTGAAAACAAGAGAA+AGG | - | chr1_3:4082414-4082433 | None:intergenic | 30.0% |
| ATCATCATAATTCCTCTTAC+CGG | - | chr1_3:4082732-4082751 | None:intergenic | 30.0% | |
| ! | TTATGATGATGTGAATGACA+AGG | + | chr1_3:4082742-4082761 | Msa0098140:CDS | 30.0% |
| ATTCAATCGGAGAAACTTAA+CGG | + | chr1_3:4082800-4082819 | Msa0098140:CDS | 30.0% | |
| !!! | GCGTTGTTTTTATATTGTTG+AGG | + | chr1_3:4082972-4082991 | Msa0098140:intron | 30.0% |
| ! | TCATTTTCATTCAACAGCAA+AGG | - | chr1_3:4083325-4083344 | None:intergenic | 30.0% |
| TTGTTATCCAATTGAACACT+TGG | + | chr1_3:4083392-4083411 | Msa0098140:intron | 30.0% | |
| CATTATTCCAAGTGTTCAAT+TGG | - | chr1_3:4083402-4083421 | None:intergenic | 30.0% | |
| !! | TATATATTGTGGGTCTTGTT+TGG | + | chr1_3:4083517-4083536 | Msa0098140:intron | 30.0% |
| TATGGAAATAAGCTGAAAAC+AGG | + | chr1_3:4083674-4083693 | Msa0098140:intron | 30.0% | |
| AATAAGCTGAAAACAGGTTA+TGG | + | chr1_3:4083680-4083699 | Msa0098140:intron | 30.0% | |
| AAAAAGTGACCAACAAGTTT+GGG | - | chr1_3:4083787-4083806 | None:intergenic | 30.0% | |
| TAAAAAGTGACCAACAAGTT+TGG | - | chr1_3:4083788-4083807 | None:intergenic | 30.0% | |
| TTTGTGTTGTATTGTTGATC+AGG | + | chr1_3:4083916-4083935 | Msa0098140:intron | 30.0% | |
| TTTGTGTTGTATTGTTGATC+AGG | + | chr1_3:4083916-4083935 | Msa0098140:intron | 30.0% | |
| ATCTCAAATTAGTTGAACTC+GGG | + | chr1_3:4084219-4084238 | Msa0098140:CDS | 30.0% | |
| GTGTAAATTACTGATCAGTT+AGG | + | chr1_3:4084252-4084271 | Msa0098140:intron | 30.0% | |
| ATTACTGATCAGTTAGGTTA+TGG | + | chr1_3:4084258-4084277 | Msa0098140:intron | 30.0% | |
| TTAAACACAAGACAGTCATT+AGG | - | chr1_3:4084328-4084347 | None:intergenic | 30.0% | |
| ! | GTTTGGTTATGCTCTTTTTA+AGG | + | chr1_3:4084385-4084404 | Msa0098140:CDS | 30.0% |
| AAGGGAAGAAATGATTACTT+GGG | - | chr1_3:4084527-4084546 | None:intergenic | 30.0% | |
| AATATGGACAATAGAAACTG+AGG | - | chr1_3:4084693-4084712 | None:intergenic | 30.0% | |
| TACTTGATCATATCATCCTA+AGG | + | chr1_3:4084808-4084827 | Msa0098140:intron | 30.0% | |
| TTGCTTAAATACGAGTTAAC+AGG | - | chr1_3:4084938-4084957 | None:intergenic | 30.0% | |
| TTTAGTGTAAATATGGAGCA+AGG | + | chr1_3:4084979-4084998 | Msa0098140:intron | 30.0% | |
| GTGCAATACAAGAATAAAGA+TGG | + | chr1_3:4085045-4085064 | Msa0098140:CDS | 30.0% | |
| ATACAAGAATAAAGATGGTC+AGG | + | chr1_3:4085050-4085069 | Msa0098140:CDS | 30.0% | |
| CATTACAGAATCATTCTGAA+AGG | - | chr1_3:4085165-4085184 | None:intergenic | 30.0% | |
| CTTTCAGAATGATTCTGTAA+TGG | + | chr1_3:4085163-4085182 | Msa0098140:intron | 30.0% | |
| ! | TTGTGGCTTATTTCTTAGAA+AGG | - | chr1_3:4085212-4085231 | None:intergenic | 30.0% |
| !!! | TTTTGGTTTACAAAAGTGGT+TGG | + | chr1_3:4085270-4085289 | Msa0098140:intron | 30.0% |
| ! | CTGAGTTTTCTTACTACTAA+AGG | + | chr1_3:4085295-4085314 | Msa0098140:intron | 30.0% |
| !! | TCTTATATTGCTTTGTTTGC+AGG | + | chr1_3:4085366-4085385 | Msa0098140:intron | 30.0% |
| ATTAAGCCAACAAAACAAGA+GGG | - | chr1_3:4085400-4085419 | None:intergenic | 30.0% | |
| AATTAAGCCAACAAAACAAG+AGG | - | chr1_3:4085401-4085420 | None:intergenic | 30.0% | |
| AAGGTTCCTTCTATTTCAAA+CGG | + | chr1_3:4085544-4085563 | Msa0098140:CDS | 30.0% | |
| ! | ATATCACCGTTTGAAATAGA+AGG | - | chr1_3:4085553-4085572 | None:intergenic | 30.0% |
| TATAGAACTTGGAGAATGAT+TGG | - | chr1_3:4085613-4085632 | None:intergenic | 30.0% | |
| ATTACGTTGAAAATGATTGC+AGG | + | chr1_3:4085694-4085713 | Msa0098140:intron | 30.0% | |
| !!! | GTTTTGAGCTTTAAAAGTGT+TGG | - | chr1_3:4086135-4086154 | None:intergenic | 30.0% |
| TCAGATAATCAAAACAAGCT+TGG | - | chr1_3:4086270-4086289 | None:intergenic | 30.0% | |
| AATCCTGAAAGTAAAGAGAT+CGG | - | chr1_3:4086319-4086338 | None:intergenic | 30.0% | |
| ACCCTAGGAATAGATAAATT+TGG | - | chr1_3:4086537-4086556 | None:intergenic | 30.0% | |
| TTTCAAAATGCATTTACTGG+GGG | - | chr1_3:4086647-4086666 | None:intergenic | 30.0% | |
| AGTTATAGTCTGGTATGTAA+TGG | - | chr1_3:4086855-4086874 | None:intergenic | 30.0% | |
| TAAACTCTGATTAAGAGGTA+TGG | - | chr1_3:4086879-4086898 | None:intergenic | 30.0% | |
| ACTGATAAACTCTGATTAAG+AGG | - | chr1_3:4086884-4086903 | None:intergenic | 30.0% | |
| TTGGATGTAACAGAAAGTGA+GGG | - | chr1_3:4082505-4082524 | None:intergenic | 35.0% | |
| TTTGGATGTAACAGAAAGTG+AGG | - | chr1_3:4082506-4082525 | None:intergenic | 35.0% | |
| ! | AGAGGAAAAATGAAGGGTTT+TGG | - | chr1_3:4082524-4082543 | None:intergenic | 35.0% |
| ATTGTATAGATCCATATCGG+AGG | - | chr1_3:4082651-4082670 | None:intergenic | 35.0% | |
| TGGATCTATACAATATCGGT+TGG | + | chr1_3:4082657-4082676 | Msa0098140:CDS | 35.0% | |
| !! | ATTTGATTTTCTCCGGTAAG+AGG | + | chr1_3:4082717-4082736 | Msa0098140:CDS | 35.0% |
| TTTCTCCGATTGAATATCTC+CGG | - | chr1_3:4082795-4082814 | None:intergenic | 35.0% | |
| GATGCTGATGTTATCATTGT+TGG | + | chr1_3:4082824-4082843 | Msa0098140:CDS | 35.0% | |
| AAACACTTGTGAGACAGTTT+GGG | - | chr1_3:4083735-4083754 | None:intergenic | 35.0% | |
| TAAACACTTGTGAGACAGTT+TGG | - | chr1_3:4083736-4083755 | None:intergenic | 35.0% | |
| ! | GCATATTTGAGTTTATCGAC+TGG | - | chr1_3:4083761-4083780 | None:intergenic | 35.0% |
| ATATGCAAACCCAAACTTGT+TGG | + | chr1_3:4083775-4083794 | Msa0098140:intron | 35.0% | |
| CTCTTATGTGGTCAAATTGA+AGG | - | chr1_3:4083820-4083839 | None:intergenic | 35.0% | |
| !!! | AAACTTTGTGATGGGTTTTG+CGG | + | chr1_3:4083844-4083863 | Msa0098140:intron | 35.0% |
| ATTGTTGATCAGGTAGATTC+AGG | + | chr1_3:4083926-4083945 | Msa0098140:intron | 35.0% | |
| ATTGTTGATCAGGTAGATTC+AGG | + | chr1_3:4083926-4083945 | Msa0098140:intron | 35.0% | |
| ! | AACTAATTTGAGATAGCCAC+CGG | - | chr1_3:4084213-4084232 | None:intergenic | 35.0% |
| !! | GGTTATGCTCTTTTTAAGGA+CGG | + | chr1_3:4084389-4084408 | Msa0098140:CDS | 35.0% |
| !! | GTTATGCTCTTTTTAAGGAC+GGG | + | chr1_3:4084390-4084409 | Msa0098140:CDS | 35.0% |
| ! | TCTGAGTGAAACTTTTCCAA+GGG | - | chr1_3:4084437-4084456 | None:intergenic | 35.0% |
| ! | ATCTGAGTGAAACTTTTCCA+AGG | - | chr1_3:4084438-4084457 | None:intergenic | 35.0% |
| AAATGATTACTTGGGAAGTG+AGG | - | chr1_3:4084519-4084538 | None:intergenic | 35.0% | |
| CAAGGGAAGAAATGATTACT+TGG | - | chr1_3:4084528-4084547 | None:intergenic | 35.0% | |
| !! | AGATTGACTTGCTAGATTGT+TGG | + | chr1_3:4084606-4084625 | Msa0098140:intron | 35.0% |
| GGATGATATGATCAAGTACT+AGG | - | chr1_3:4084806-4084825 | None:intergenic | 35.0% | |
| TCATATCATCCTAAGGAGTA+AGG | + | chr1_3:4084815-4084834 | Msa0098140:intron | 35.0% | |
| AATTTCCCTACTTGAAGAGA+AGG | + | chr1_3:4085008-4085027 | Msa0098140:CDS | 35.0% | |
| ATTTCCCTACTTGAAGAGAA+GGG | + | chr1_3:4085009-4085028 | Msa0098140:CDS | 35.0% | |
| TGAAAGGAATTCTCACCTTA+GGG | - | chr1_3:4085149-4085168 | None:intergenic | 35.0% | |
| AAAGGAGTTGACAATATGAC+TGG | - | chr1_3:4085194-4085213 | None:intergenic | 35.0% | |
| !!! | GATAATCCCTCTTGTTTTGT+TGG | + | chr1_3:4085391-4085410 | Msa0098140:CDS | 35.0% |
| TGAATGCATCATAAAGCTCA+GGG | - | chr1_3:4085724-4085743 | None:intergenic | 35.0% | |
| ATGAATGCATCATAAAGCTC+AGG | - | chr1_3:4085725-4085744 | None:intergenic | 35.0% | |
| ! | ATCCTTTTATACCTTGCGTA+AGG | + | chr1_3:4085970-4085989 | Msa0098140:CDS | 35.0% |
| TACCTTACGCAAGGTATAAA+AGG | - | chr1_3:4085975-4085994 | None:intergenic | 35.0% | |
| GACTGCTTATTTATTTGTGC+TGG | - | chr1_3:4086032-4086051 | None:intergenic | 35.0% | |
| CATCTTATCAATTGGATCAC+TGG | - | chr1_3:4086074-4086093 | None:intergenic | 35.0% | |
| CAGTGATCCAATTGATAAGA+TGG | + | chr1_3:4086072-4086091 | Msa0098140:intron | 35.0% | |
| TTCTGCTCCATCTTATCAAT+TGG | - | chr1_3:4086082-4086101 | None:intergenic | 35.0% | |
| GTCAATATTGGTGCATTGAA+AGG | - | chr1_3:4086107-4086126 | None:intergenic | 35.0% | |
| GTGTTGGATGAAGTCAATAT+TGG | - | chr1_3:4086119-4086138 | None:intergenic | 35.0% | |
| TGCACTGAAAACCTTGTAAA+GGG | - | chr1_3:4086218-4086237 | None:intergenic | 35.0% | |
| ATGCACTGAAAACCTTGTAA+AGG | - | chr1_3:4086219-4086238 | None:intergenic | 35.0% | |
| !!! | TGTTTTGATTATCTGAGCCT+TGG | + | chr1_3:4086274-4086293 | Msa0098140:CDS | 35.0% |
| TACTTTCAGGATTAAACCCT+CGG | + | chr1_3:4086326-4086345 | Msa0098140:CDS | 35.0% | |
| AAATGGAGAACCAAGCTTAA+GGG | - | chr1_3:4086352-4086371 | None:intergenic | 35.0% | |
| ATTCCTTCGGCCTTAATTAT+GGG | - | chr1_3:4086578-4086597 | None:intergenic | 35.0% | |
| AATTCCTTCGGCCTTAATTA+TGG | - | chr1_3:4086579-4086598 | None:intergenic | 35.0% | |
| AAACATCTGTCGAATTCCTT+CGG | - | chr1_3:4086591-4086610 | None:intergenic | 35.0% | |
| !! | CTAGCCTTTAGAACTACATT+CGG | - | chr1_3:4086907-4086926 | None:intergenic | 35.0% |
| ACCAACGTTAAAACTCTTGA+GGG | + | chr1_3:4086933-4086952 | Msa0098140:three_prime_UTR | 35.0% | |
| !!! | GGGAGAGTTTTTTGCTATTA+TGG | + | chr1_3:4086953-4086972 | Msa0098140:three_prime_UTR | 35.0% |
| AGACTTATCCAACACGTACA+CGG | + | chr1_3:4082371-4082390 | Msa0098140:five_prime_UTR | 40.0% | |
| AACAGAAAGTGAGGGAAAGT+AGG | - | chr1_3:4082497-4082516 | None:intergenic | 40.0% | |
| GTTGGCAGAGGAAAAATGAA+GGG | - | chr1_3:4082530-4082549 | None:intergenic | 40.0% | |
| AGTTGGCAGAGGAAAAATGA+AGG | - | chr1_3:4082531-4082550 | None:intergenic | 40.0% | |
| !! | TCATTTTTCCTCTGCCAACT+TGG | + | chr1_3:4082531-4082550 | Msa0098140:CDS | 40.0% |
| TGATGTGAATGACAAGGTGA+AGG | + | chr1_3:4082748-4082767 | Msa0098140:CDS | 40.0% | |
| TGATGCCGGAGATATTCAAT+CGG | + | chr1_3:4082787-4082806 | Msa0098140:CDS | 40.0% | |
| GATGTTATCATTGTTGGAGC+TGG | + | chr1_3:4082830-4082849 | Msa0098140:CDS | 40.0% | |
| ACAACATGACAATCTGCAGT+AGG | + | chr1_3:4083344-4083363 | Msa0098140:intron | 40.0% | |
| ! | ATGTGTCTTGTTGTCTCTCA+TGG | + | chr1_3:4083419-4083438 | Msa0098140:intron | 40.0% |
| ! | TGTGTCTTGTTGTCTCTCAT+GGG | + | chr1_3:4083420-4083439 | Msa0098140:intron | 40.0% |
| ATAGAAGATCAGCCAGTGAA+AGG | - | chr1_3:4083876-4083895 | None:intergenic | 40.0% | |
| AACTCTCCAACAATTCTGTC+AGG | - | chr1_3:4084182-4084201 | None:intergenic | 40.0% | |
| ! | ACTAATTTGAGATAGCCACC+GGG | - | chr1_3:4084212-4084231 | None:intergenic | 40.0% |
| ACTGATCAGTTAGGTTATGG+CGG | + | chr1_3:4084261-4084280 | Msa0098140:intron | 40.0% | |
| GTGTTTAACTGCAGATTGTG+TGG | + | chr1_3:4084340-4084359 | Msa0098140:intron | 40.0% | |
| ATTGATGCACAACGAGTGTT+TGG | + | chr1_3:4084368-4084387 | Msa0098140:CDS | 40.0% | |
| AAGTTTCACTCAGATGTCTC+TGG | + | chr1_3:4084443-4084462 | Msa0098140:CDS | 40.0% | |
| !! | ACAATGGGCGTTTTATTCAG+AGG | + | chr1_3:4084477-4084496 | Msa0098140:CDS | 40.0% |
| TGTCCATATTGATGCCCTTT+AGG | + | chr1_3:4084703-4084722 | Msa0098140:intron | 40.0% | |
| !! | CAACCTAAAGGGCATCAATA+TGG | - | chr1_3:4084709-4084728 | None:intergenic | 40.0% |
| ATCATCCTAAGGAGTAAGGA+CGG | + | chr1_3:4084819-4084838 | Msa0098140:intron | 40.0% | |
| TTTCCCTACTTGAAGAGAAG+GGG | + | chr1_3:4085010-4085029 | Msa0098140:CDS | 40.0% | |
| CCATCACAAACAATGGTAAG+AGG | - | chr1_3:4085093-4085112 | None:intergenic | 40.0% | |
| CCTCTTACCATTGTTTGTGA+TGG | + | chr1_3:4085090-4085109 | Msa0098140:CDS | 40.0% | |
| GAAACAGCCATCACAAACAA+TGG | - | chr1_3:4085100-4085119 | None:intergenic | 40.0% | |
| CTGAAAGGAATTCTCACCTT+AGG | - | chr1_3:4085150-4085169 | None:intergenic | 40.0% | |
| AGGAGCAGTATGTAGAATTC+TGG | + | chr1_3:4085336-4085355 | Msa0098140:intron | 40.0% | |
| GAACTTCCATGTGCTAATCA+CGG | + | chr1_3:4085433-4085452 | Msa0098140:CDS | 40.0% | |
| AAGGATCTCCAAGTATGACA+TGG | - | chr1_3:4085459-4085478 | None:intergenic | 40.0% | |
| GGATAGAAAAGAATTGGCGA+AGG | - | chr1_3:4085478-4085497 | None:intergenic | 40.0% | |
| CGAATCTCTGTACTGCTTAT+AGG | - | chr1_3:4085499-4085518 | None:intergenic | 40.0% | |
| AATGCATCATAAAGCTCAGG+GGG | - | chr1_3:4085722-4085741 | None:intergenic | 40.0% | |
| GAATGCATCATAAAGCTCAG+GGG | - | chr1_3:4085723-4085742 | None:intergenic | 40.0% | |
| CACAATGTCAGACAATGCTA+CGG | - | chr1_3:4085882-4085901 | None:intergenic | 40.0% | |
| ! | TCGAGGTATTTGCAAAGTGT+AGG | - | chr1_3:4085950-4085969 | None:intergenic | 40.0% |
| GCAAGGTATAAAAGGATTCG+AGG | - | chr1_3:4085967-4085986 | None:intergenic | 40.0% | |
| AGACAACATTACCTTACGCA+AGG | - | chr1_3:4085984-4086003 | None:intergenic | 40.0% | |
| GTAATGTTGTCTGCCTTTCT+TGG | + | chr1_3:4085992-4086011 | Msa0098140:intron | 40.0% | |
| TAAGCAGTCACAAAGCTATC+TGG | + | chr1_3:4086043-4086062 | Msa0098140:intron | 40.0% | |
| GGCATCCACCATAAATACAT+TGG | + | chr1_3:4086186-4086205 | Msa0098140:CDS | 40.0% | |
| TCCACCATAAATACATTGGC+AGG | + | chr1_3:4086190-4086209 | Msa0098140:CDS | 40.0% | |
| TCCTGCCAATGTATTTATGG+TGG | - | chr1_3:4086194-4086213 | None:intergenic | 40.0% | |
| ATTTCCTTCCTTGCTTCATC+GGG | - | chr1_3:4086244-4086263 | None:intergenic | 40.0% | |
| CATTTCCTTCCTTGCTTCAT+CGG | - | chr1_3:4086245-4086264 | None:intergenic | 40.0% | |
| TTTGATTATCTGAGCCTTGG+AGG | + | chr1_3:4086277-4086296 | Msa0098140:CDS | 40.0% | |
| GAAATGGAGAACCAAGCTTA+AGG | - | chr1_3:4086353-4086372 | None:intergenic | 40.0% | |
| ATACTGCGACAGCAAAGAAA+TGG | - | chr1_3:4086369-4086388 | None:intergenic | 40.0% | |
| ! | TTCTTTGCTGTCGCAGTATT+TGG | + | chr1_3:4086370-4086389 | Msa0098140:CDS | 40.0% |
| TACCATTTCCTTCACCTAAG+AGG | + | chr1_3:4086410-4086429 | Msa0098140:CDS | 40.0% | |
| ACCATTTCCTTCACCTAAGA+GGG | + | chr1_3:4086411-4086430 | Msa0098140:CDS | 40.0% | |
| TTACCCATAATTAAGGCCGA+AGG | + | chr1_3:4086572-4086591 | Msa0098140:CDS | 40.0% | |
| TCTGTAATAAGCTGGAACAG+TGG | - | chr1_3:4086621-4086640 | None:intergenic | 40.0% | |
| GAGGTATGGTAGTTATAGTC+TGG | - | chr1_3:4086865-4086884 | None:intergenic | 40.0% | |
| !! | CAGTCCGAATGTAGTTCTAA+AGG | + | chr1_3:4086900-4086919 | Msa0098140:three_prime_UTR | 40.0% |
| CACCAACGTTAAAACTCTTG+AGG | + | chr1_3:4086932-4086951 | Msa0098140:three_prime_UTR | 40.0% | |
| !! | TCCCTCAAGAGTTTTAACGT+TGG | - | chr1_3:4086937-4086956 | None:intergenic | 40.0% |
| AATGCATGAGAGATGCGAGA+CGG | - | chr1_3:4082463-4082482 | None:intergenic | 45.0% | |
| ATTGTTGGAGCTGGTATTGC+TGG | + | chr1_3:4082839-4082858 | Msa0098140:CDS | 45.0% | |
| ! | CTGCTTTGGCTCATACACTT+GGG | + | chr1_3:4082864-4082883 | Msa0098140:CDS | 45.0% |
| ! | TTTGGCTCATACACTTGGGA+AGG | + | chr1_3:4082868-4082887 | Msa0098140:CDS | 45.0% |
| CACAGACACATGTTGAACAC+CGG | + | chr1_3:4083239-4083258 | Msa0098140:intron | 45.0% | |
| CATGTTGAACACCGGATAAG+AGG | + | chr1_3:4083247-4083266 | Msa0098140:intron | 45.0% | |
| TACCACTGACACCTCTTATC+CGG | - | chr1_3:4083261-4083280 | None:intergenic | 45.0% | |
| TCTGCAGTAGGCTGTAATCA+CGG | + | chr1_3:4083356-4083375 | Msa0098140:intron | 45.0% | |
| ! | GATCAGCCAGTGAAAGGTAT+AGG | - | chr1_3:4083870-4083889 | None:intergenic | 45.0% |
| AGTGAGCCTGACAGAATTGT+TGG | + | chr1_3:4084173-4084192 | Msa0098140:CDS | 45.0% | |
| TTAGTTGAACTCGGGCTTCA+AGG | + | chr1_3:4084227-4084246 | Msa0098140:CDS | 45.0% | |
| GCGGATCATGAGTGCTATAA+AGG | + | chr1_3:4084280-4084299 | Msa0098140:intron | 45.0% | |
| ACACAAGACAGTCATTAGGC+AGG | - | chr1_3:4084324-4084343 | None:intergenic | 45.0% | |
| TACTCGTCTCTCTTATCCCT+TGG | + | chr1_3:4084418-4084437 | Msa0098140:CDS | 45.0% | |
| TCTGGCAGAAGCTTTCACAA+TGG | + | chr1_3:4084461-4084480 | Msa0098140:CDS | 45.0% | |
| CTGGCAGAAGCTTTCACAAT+GGG | + | chr1_3:4084462-4084481 | Msa0098140:CDS | 45.0% | |
| TATTCAGAGGATGCGAGAGA+AGG | + | chr1_3:4084490-4084509 | Msa0098140:CDS | 45.0% | |
| TGTCCCCTTCTCTTCAAGTA+GGG | - | chr1_3:4085016-4085035 | None:intergenic | 45.0% | |
| TTGTCCCCTTCTCTTCAAGT+AGG | - | chr1_3:4085017-4085036 | None:intergenic | 45.0% | |
| GAAGAGAAGGGGACAATCAA+AGG | + | chr1_3:4085021-4085040 | Msa0098140:CDS | 45.0% | |
| TCGTTCTCTTTGCAACCCTA+AGG | + | chr1_3:4085131-4085150 | Msa0098140:CDS | 45.0% | |
| GGCTCTTAGTCATGCATAGA+AGG | + | chr1_3:4085316-4085335 | Msa0098140:intron | 45.0% | |
| AATCACGGCCATGTCATACT+TGG | + | chr1_3:4085448-4085467 | Msa0098140:CDS | 45.0% | |
| CAGTACAGAGATTCGTTGTC+TGG | + | chr1_3:4085504-4085523 | Msa0098140:CDS | 45.0% | |
| ATAGAAGGAACCTTCGTTCC+AGG | - | chr1_3:4085538-4085557 | None:intergenic | 45.0% | |
| TGGAGAATGATTGGTACCTG+CGG | - | chr1_3:4085604-4085623 | None:intergenic | 45.0% | |
| AAAGGGTAAACGACATGCCA+AGG | - | chr1_3:4085649-4085668 | None:intergenic | 45.0% | |
| ATGCATCATAAAGCTCAGGG+GGG | - | chr1_3:4085721-4085740 | None:intergenic | 45.0% | |
| TATGTTGCCTTTGTCCACTG+CGG | - | chr1_3:4085750-4085769 | None:intergenic | 45.0% | |
| CAGTGGACAAAGGCAACATA+AGG | + | chr1_3:4085750-4085769 | Msa0098140:CDS | 45.0% | |
| TCTGCTGGCATACTTCTGTT+CGG | - | chr1_3:4085782-4085801 | None:intergenic | 45.0% | |
| GAATGCATCTCCCATCAGTA+CGG | - | chr1_3:4085825-4085844 | None:intergenic | 45.0% | |
| AACATGCGTCATCCACTAAC+AGG | + | chr1_3:4085845-4085864 | Msa0098140:CDS | 45.0% | |
| ACATGCGTCATCCACTAACA+GGG | + | chr1_3:4085846-4085865 | Msa0098140:CDS | 45.0% | |
| CGTAGCATTGTCTGACATTG+TGG | + | chr1_3:4085880-4085899 | Msa0098140:CDS | 45.0% | |
| AAAGTGTAGGTGCATCGTTC+AGG | - | chr1_3:4085937-4085956 | None:intergenic | 45.0% | |
| GTCATTCAATTTGCAGCCTG+TGG | + | chr1_3:4086165-4086184 | Msa0098140:intron | 45.0% | |
| !! | GTATTTATGGTGGATGCCAC+AGG | - | chr1_3:4086184-4086203 | None:intergenic | 45.0% |
| GGCTCCTGCCAATGTATTTA+TGG | - | chr1_3:4086197-4086216 | None:intergenic | 45.0% | |
| TTTCCTTCCTTGCTTCATCG+GGG | - | chr1_3:4086243-4086262 | None:intergenic | 45.0% | |
| ! | AGATCGGTCCTTCTGAGAAT+AGG | - | chr1_3:4086303-4086322 | None:intergenic | 45.0% |
| GGACCGATCTCTTTACTTTC+AGG | + | chr1_3:4086313-4086332 | Msa0098140:CDS | 45.0% | |
| ACCCTCTTAGGTGAAGGAAA+TGG | - | chr1_3:4086415-4086434 | None:intergenic | 45.0% | |
| ATCTATTCCTAGGGTGCATC+TGG | + | chr1_3:4086542-4086561 | Msa0098140:intron | 45.0% | |
| AATGATTCCAGATGCACCCT+AGG | - | chr1_3:4086552-4086571 | None:intergenic | 45.0% | |
| AATAAGCTGGAACAGTGGCA+GGG | - | chr1_3:4086616-4086635 | None:intergenic | 45.0% | |
| TAATAAGCTGGAACAGTGGC+AGG | - | chr1_3:4086617-4086636 | None:intergenic | 45.0% | |
| ! | TTAGTCTTTGCGGTTGCACT+TGG | + | chr1_3:4086995-4087014 | Msa0098140:three_prime_UTR | 45.0% |
| CAGCTAATAACATGCGTCCG+TGG | + | chr1_3:4082437-4082456 | Msa0098140:five_prime_UTR | 50.0% | |
| TCTCTCTCTCTCTGCCAAGT+TGG | - | chr1_3:4082548-4082567 | None:intergenic | 50.0% | |
| ! | GGTGATGACGACGGAGAATT+AGG | - | chr1_3:4082604-4082623 | None:intergenic | 50.0% |
| !! | TGGTATTGCTGGTGCTGCTT+TGG | + | chr1_3:4082850-4082869 | Msa0098140:CDS | 50.0% |
| ! | GCTGCTTTGGCTCATACACT+TGG | + | chr1_3:4082863-4082882 | Msa0098140:CDS | 50.0% |
| CTGCAGTAGGCTGTAATCAC+GGG | + | chr1_3:4083357-4083376 | Msa0098140:intron | 50.0% | |
| !! | GTAATCACGGGCTTGTTGTG+TGG | + | chr1_3:4083369-4083388 | Msa0098140:intron | 50.0% |
| TTGCGGCCTATACCTTTCAC+TGG | + | chr1_3:4083861-4083880 | Msa0098140:intron | 50.0% | |
| GTTGGAGAGTTGCTACAACC+CGG | + | chr1_3:4084191-4084210 | Msa0098140:CDS | 50.0% | |
| ACATGGCCGTGATTAGCACA+TGG | - | chr1_3:4085442-4085461 | None:intergenic | 50.0% | |
| ! | CGTTGTCTGGTTGATGTACC+TGG | + | chr1_3:4085517-4085536 | Msa0098140:CDS | 50.0% |
| ! | GGTTGATGTACCTGGAACGA+AGG | + | chr1_3:4085525-4085544 | Msa0098140:CDS | 50.0% |
| TGATGCATTCATAGCCGCAG+TGG | + | chr1_3:4085733-4085752 | Msa0098140:CDS | 50.0% | |
| TTCATAGCCGCAGTGGACAA+AGG | + | chr1_3:4085740-4085759 | Msa0098140:CDS | 50.0% | |
| CATGCGTCATCCACTAACAG+GGG | + | chr1_3:4085847-4085866 | Msa0098140:CDS | 50.0% | |
| ATGCGTCATCCACTAACAGG+GGG | + | chr1_3:4085848-4085867 | Msa0098140:CDS | 50.0% | |
| ATTGGCAGGAGCCCTTTACA+AGG | + | chr1_3:4086204-4086223 | Msa0098140:CDS | 50.0% | |
| TTCCTTCCTTGCTTCATCGG+GGG | - | chr1_3:4086242-4086261 | None:intergenic | 50.0% | |
| ! | CTTCTGAGAATAGGCCTCCA+AGG | - | chr1_3:4086294-4086313 | None:intergenic | 50.0% |
| CTTGGAGGCCTATTCTCAGA+AGG | + | chr1_3:4086292-4086311 | Msa0098140:CDS | 50.0% | |
| !! | GCTGTCGCAGTATTTGGTGT+TGG | + | chr1_3:4086376-4086395 | Msa0098140:CDS | 50.0% |
| TTCCTTCACCTAAGAGGGTG+TGG | + | chr1_3:4086416-4086435 | Msa0098140:CDS | 50.0% | |
| ATCCACACCCTCTTAGGTGA+AGG | - | chr1_3:4086421-4086440 | None:intergenic | 50.0% | |
| ! | TCACCTAAGAGGGTGTGGAT+TGG | + | chr1_3:4086421-4086440 | Msa0098140:CDS | 50.0% |
| AATGTGCGCCGTGTACGTGT+TGG | - | chr1_3:4082382-4082401 | None:intergenic | 55.0% | |
| ! | TCTCTCTGCCAAGTTGGCAG+AGG | - | chr1_3:4082542-4082561 | None:intergenic | 55.0% |
| ! | GGTGACAGTGGTGATGACGA+CGG | - | chr1_3:4082613-4082632 | None:intergenic | 55.0% |
| ATCACCACTGTCACCATCGC+CGG | + | chr1_3:4082618-4082637 | Msa0098140:CDS | 55.0% | |
| CCATATCGGAGGAATCTCGC+CGG | - | chr1_3:4082640-4082659 | None:intergenic | 55.0% | |
| !! | AGCGTGACGAGTACTGATGC+CGG | + | chr1_3:4082773-4082792 | Msa0098140:CDS | 55.0% |
| !! | CACCGGATAAGAGGTGTCAG+TGG | + | chr1_3:4083256-4083275 | Msa0098140:intron | 55.0% |
| ACTGGCCGTCCTTACTCCTT+AGG | - | chr1_3:4084827-4084846 | None:intergenic | 55.0% | |
| AAAGACGACAGTTGCTCCGC+AGG | + | chr1_3:4085585-4085604 | Msa0098140:CDS | 55.0% | |
| ATCAGTACGGCTCCAGGAGT+AGG | - | chr1_3:4085812-4085831 | None:intergenic | 55.0% | |
| TACTCCTGGAGCCGTACTGA+TGG | + | chr1_3:4085811-4085830 | Msa0098140:CDS | 55.0% | |
| ! | ACTCCTGGAGCCGTACTGAT+GGG | + | chr1_3:4085812-4085831 | Msa0098140:CDS | 55.0% |
| GCATCGTTCAGGTCACGCAT+AGG | - | chr1_3:4085926-4085945 | None:intergenic | 55.0% | |
| ATCCCCCGATGAAGCAAGGA+AGG | + | chr1_3:4086237-4086256 | Msa0098140:CDS | 55.0% | |
| AAACCCTCGGCCCTTAAGCT+TGG | + | chr1_3:4086339-4086358 | Msa0098140:CDS | 55.0% | |
| GAACCAAGCTTAAGGGCCGA+GGG | - | chr1_3:4086345-4086364 | None:intergenic | 55.0% | |
| AGAACCAAGCTTAAGGGCCG+AGG | - | chr1_3:4086346-4086365 | None:intergenic | 55.0% | |
| GCTCCAATCCACACCCTCTT+AGG | - | chr1_3:4086427-4086446 | None:intergenic | 55.0% | |
| GGGGGAGCTCTGTAATAAGC+TGG | - | chr1_3:4086629-4086648 | None:intergenic | 55.0% | |
| TGAGAGATGCGAGACGGCCA+CGG | - | chr1_3:4082457-4082476 | None:intergenic | 60.0% | |
| CCGGCGAGATTCCTCCGATA+TGG | + | chr1_3:4082637-4082656 | Msa0098140:CDS | 60.0% | |
| GGAGAGTTGCTACAACCCGG+TGG | + | chr1_3:4084194-4084213 | Msa0098140:CDS | 60.0% | |
| GGAGTAGGACGAGGATCTGC+TGG | - | chr1_3:4085797-4085816 | None:intergenic | 60.0% | |
| GCAGATCCTCGTCCTACTCC+TGG | + | chr1_3:4085797-4085816 | Msa0098140:CDS | 60.0% | |
| TCTCCCATCAGTACGGCTCC+AGG | - | chr1_3:4085818-4085837 | None:intergenic | 60.0% | |
| CGTCATCCACTAACAGGGGG+CGG | + | chr1_3:4085851-4085870 | Msa0098140:CDS | 60.0% | |
| GTCATTCCGCCCCCTGTTAG+TGG | - | chr1_3:4085860-4085879 | None:intergenic | 60.0% | |
| GTGCATCCCCCGATGAAGCA+AGG | + | chr1_3:4086233-4086252 | Msa0098140:CDS | 60.0% | |
| ACGGCTCCAGGAGTAGGACG+AGG | - | chr1_3:4085806-4085825 | None:intergenic | 65.0% | |
| CTCGCCGGCGATGGTGACAG+TGG | - | chr1_3:4082625-4082644 | None:intergenic | 70.0% | |
| CGGAGGAATCTCGCCGGCGA+TGG | - | chr1_3:4082634-4082653 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4082360 | 4087026 | 4082360 | ID=Msa0098140;Name=Msa0098140 |
| chr1_3 | mRNA | 4082360 | 4087026 | 4082360 | ID=Msa0098140-mRNA-1;Parent=Msa0098140;Name=Msa0098140-mRNA-1;_AED=0.15;_eAED=0.15;_QI=116|1|1|1|1|1|8|362|584 |
| chr1_3 | exon | 4082360 | 4082889 | 4082360 | ID=Msa0098140-mRNA-1:exon:1294;Parent=Msa0098140-mRNA-1 |
| chr1_3 | exon | 4084137 | 4084248 | 4084137 | ID=Msa0098140-mRNA-1:exon:1295;Parent=Msa0098140-mRNA-1 |
| chr1_3 | exon | 4084354 | 4084528 | 4084354 | ID=Msa0098140-mRNA-1:exon:1296;Parent=Msa0098140-mRNA-1 |
| chr1_3 | exon | 4084984 | 4085152 | 4084984 | ID=Msa0098140-mRNA-1:exon:1297;Parent=Msa0098140-mRNA-1 |
| chr1_3 | exon | 4085388 | 4085606 | 4085388 | ID=Msa0098140-mRNA-1:exon:1298;Parent=Msa0098140-mRNA-1 |
| chr1_3 | exon | 4085716 | 4085991 | 4085716 | ID=Msa0098140-mRNA-1:exon:1299;Parent=Msa0098140-mRNA-1 |
| chr1_3 | exon | 4086181 | 4086459 | 4086181 | ID=Msa0098140-mRNA-1:exon:1300;Parent=Msa0098140-mRNA-1 |
| chr1_3 | exon | 4086554 | 4087026 | 4086554 | ID=Msa0098140-mRNA-1:exon:1301;Parent=Msa0098140-mRNA-1 |
| chr1_3 | five_prime_UTR | 4082360 | 4082475 | 4082360 | ID=Msa0098140-mRNA-1:five_prime_utr;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4082476 | 4082889 | 4082476 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4084137 | 4084248 | 4084137 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4084354 | 4084528 | 4084354 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4084984 | 4085152 | 4084984 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4085388 | 4085606 | 4085388 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4085716 | 4085991 | 4085716 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4086181 | 4086459 | 4086181 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | CDS | 4086554 | 4086664 | 4086554 | ID=Msa0098140-mRNA-1:cds;Parent=Msa0098140-mRNA-1 |
| chr1_3 | three_prime_UTR | 4086665 | 4087026 | 4086665 | ID=Msa0098140-mRNA-1:three_prime_utr;Parent=Msa0098140-mRNA-1 |
| Gene Sequence |
| Protein sequence |
