Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430790 | KEH35789.1 | 97.260 | 219 | 6 | 0 | 1 | 219 | 1 | 219 | 6.49e-151 | 428 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430790 | sp|P49098|CYB5_TOBAC | 41.221 | 131 | 64 | 3 | 90 | 218 | 12 | 131 | 9.98e-27 | 102 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430790 | G7ZXK9 | 97.260 | 219 | 6 | 0 | 1 | 219 | 1 | 219 | 3.10e-151 | 428 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017900 | Msa0430790 | -0.801303 | 9.595635e-49 | -8.615850e-47 |
| Msa0032580 | Msa0430790 | 0.804397 | 2.203060e-49 | -8.615850e-47 |
| Msa0039330 | Msa0430790 | 0.805627 | 1.218565e-49 | -8.615850e-47 |
| Msa0090100 | Msa0430790 | 0.809861 | 1.534793e-50 | -8.615850e-47 |
| Msa0091570 | Msa0430790 | 0.805230 | 1.475770e-49 | -8.615850e-47 |
| Msa0094920 | Msa0430790 | 0.806226 | 9.116010e-50 | -8.615850e-47 |
| Msa0113970 | Msa0430790 | 0.801052 | 1.079867e-48 | -8.615850e-47 |
| Msa0115270 | Msa0430790 | 0.806332 | 8.661542e-50 | -8.615850e-47 |
| Msa0119850 | Msa0430790 | 0.818315 | 2.089968e-52 | -8.615850e-47 |
| Msa0135380 | Msa0430790 | 0.820191 | 7.815648e-53 | -8.615850e-47 |
| Msa0137570 | Msa0430790 | 0.802003 | 6.893358e-49 | -8.615850e-47 |
| Msa0160550 | Msa0430790 | 0.805179 | 1.512261e-49 | -8.615850e-47 |
| Msa0172970 | Msa0430790 | 0.802581 | 5.240844e-49 | -8.615850e-47 |
| Msa0182570 | Msa0430790 | 0.808564 | 2.911384e-50 | -8.615850e-47 |
| Msa0184960 | Msa0430790 | 0.801243 | 9.872965e-49 | -8.615850e-47 |
| Msa0226530 | Msa0430790 | 0.802612 | 5.166226e-49 | -8.615850e-47 |
| Msa0372340 | Msa0430790 | 0.802992 | 4.311013e-49 | -8.615850e-47 |
| Msa0380040 | Msa0430790 | 0.850952 | 1.217151e-60 | -8.615850e-47 |
| Msa0380890 | Msa0430790 | 0.998576 | 2.814553e-269 | -8.615850e-47 |
| Msa0389810 | Msa0430790 | 0.802331 | 5.901667e-49 | -8.615850e-47 |
| Msa0399340 | Msa0430790 | 0.800799 | 1.216568e-48 | -8.615850e-47 |
| Msa0402790 | Msa0430790 | 0.804678 | 1.924629e-49 | -8.615850e-47 |
| Msa0421780 | Msa0430790 | -0.809871 | 1.527151e-50 | -8.615850e-47 |
| Msa0429290 | Msa0430790 | 0.852229 | 5.293551e-61 | -8.615850e-47 |
| Msa0430620 | Msa0430790 | 0.817385 | 3.389390e-52 | -8.615850e-47 |
| Msa0430790 | Msa0431670 | 0.813447 | 2.548193e-51 | -8.615850e-47 |
| Msa0430790 | Msa0432770 | 0.815395 | 9.451073e-52 | -8.615850e-47 |
| Msa0430790 | Msa0465790 | 0.809281 | 2.045137e-50 | -8.615850e-47 |
| Msa0430790 | Msa0467900 | -0.807154 | 5.804663e-50 | -8.615850e-47 |
| Msa0430790 | Msa0468130 | 0.808895 | 2.473404e-50 | -8.615850e-47 |
| Msa0430790 | Msa0473240 | 0.802688 | 4.982982e-49 | -8.615850e-47 |
| Msa0430790 | Msa0475580 | 0.846237 | 2.464485e-59 | -8.615850e-47 |
| Msa0430790 | Msa0484780 | 0.805869 | 1.084074e-49 | -8.615850e-47 |
| Msa0430790 | Msa0509390 | 0.806933 | 6.466524e-50 | -8.615850e-47 |
| Msa0430790 | Msa0512750 | 0.807955 | 3.924960e-50 | -8.615850e-47 |
| Msa0430790 | Msa0519220 | 0.850936 | 1.230151e-60 | -8.615850e-47 |
| Msa0430790 | Msa0547360 | 0.800400 | 1.467418e-48 | -8.615850e-47 |
| Msa0430790 | Msa0562440 | 0.817044 | 4.043999e-52 | -8.615850e-47 |
| Msa0430790 | Msa0585000 | -0.807483 | 4.944251e-50 | -8.615850e-47 |
| Msa0430790 | Msa0610430 | 0.817935 | 2.547543e-52 | -8.615850e-47 |
| Msa0430790 | Msa0620960 | 0.816914 | 4.324603e-52 | -8.615850e-47 |
| Msa0430790 | Msa0621590 | 0.817980 | 2.489073e-52 | -8.615850e-47 |
| Msa0430790 | Msa0632870 | 0.810264 | 1.256487e-50 | -8.615850e-47 |
| Msa0430790 | Msa0633840 | 0.804204 | 2.416853e-49 | -8.615850e-47 |
| Msa0430790 | Msa0638280 | 0.801482 | 8.819433e-49 | -8.615850e-47 |
| Msa0430790 | Msa0638320 | 0.804104 | 2.535215e-49 | -8.615850e-47 |
| Msa0430790 | Msa0653490 | 0.808783 | 2.613868e-50 | -8.615850e-47 |
| Msa0430790 | Msa0661190 | -0.808287 | 3.335903e-50 | -8.615850e-47 |
| Msa0430790 | Msa0663920 | 0.807564 | 4.753293e-50 | -8.615850e-47 |
| Msa0430790 | Msa0677270 | 0.803090 | 4.114585e-49 | -8.615850e-47 |
| Msa0430790 | Msa0682840 | 0.813473 | 2.514413e-51 | -8.615850e-47 |
| Msa0430790 | Msa0682900 | 0.800139 | 1.658331e-48 | -8.615850e-47 |
| Msa0430790 | Msa0692830 | 0.814236 | 1.707645e-51 | -8.615850e-47 |
| Msa0430790 | Msa0692950 | 0.806322 | 8.701719e-50 | -8.615850e-47 |
| Msa0430790 | Msa0693380 | 0.802975 | 4.345725e-49 | -8.615850e-47 |
| Msa0430790 | Msa0708520 | 0.800424 | 1.450467e-48 | -8.615850e-47 |
| Msa0430790 | Msa0711780 | 0.811626 | 6.373820e-51 | -8.615850e-47 |
| Msa0430790 | Msa0724830 | 0.800415 | 1.457173e-48 | -8.615850e-47 |
| Msa0430790 | Msa0743260 | 0.831386 | 1.719121e-55 | -8.615850e-47 |
| Msa0430790 | Msa0771720 | 0.807739 | 4.362038e-50 | -8.615850e-47 |
| Msa0430790 | Msa0777230 | 0.809093 | 2.243720e-50 | -8.615850e-47 |
| Msa0430790 | Msa0794670 | 0.807534 | 4.823433e-50 | -8.615850e-47 |
| Msa0430790 | Msa0803890 | 0.810832 | 9.471766e-51 | -8.615850e-47 |
| Msa0430790 | Msa0824680 | 0.802995 | 4.306318e-49 | -8.615850e-47 |
| Msa0430790 | Msa0831870 | 0.811020 | 8.627446e-51 | -8.615850e-47 |
| Msa0430790 | Msa0869120 | 0.815193 | 1.047778e-51 | -8.615850e-47 |
| Msa0430790 | Msa0876580 | 0.804843 | 1.777832e-49 | -8.615850e-47 |
| Msa0430790 | Msa0884470 | 0.808129 | 3.604081e-50 | -8.615850e-47 |
| Msa0430790 | Msa0982270 | 0.807477 | 4.958613e-50 | -8.615850e-47 |
| Msa0430790 | Msa0992490 | -0.814643 | 1.387679e-51 | -8.615850e-47 |
| Msa0430790 | Msa1012830 | 0.815618 | 8.430700e-52 | -8.615850e-47 |
| Msa0430790 | Msa1014540 | 0.820884 | 5.417286e-53 | -8.615850e-47 |
| Msa0430790 | Msa1046020 | 0.804333 | 2.271465e-49 | -8.615850e-47 |
| Msa0430790 | Msa1046060 | 0.804259 | 2.353867e-49 | -8.615850e-47 |
| Msa0430790 | Msa1075220 | -0.810534 | 1.099141e-50 | -8.615850e-47 |
| Msa0430790 | Msa1082500 | 0.834370 | 3.117187e-56 | -8.615850e-47 |
| Msa0430790 | Msa1083210 | 0.821061 | 4.931282e-53 | -8.615850e-47 |
| Msa0430790 | Msa1090260 | 0.812483 | 4.144891e-51 | -8.615850e-47 |
| Msa0430790 | Msa1116130 | -0.814243 | 1.701607e-51 | -8.615850e-47 |
| Msa0430790 | Msa1129550 | 0.803333 | 3.664551e-49 | -8.615850e-47 |
| Msa0430790 | Msa1129730 | 0.809959 | 1.461863e-50 | -8.615850e-47 |
| Msa0430790 | Msa1162550 | -0.801829 | 7.484053e-49 | -8.615850e-47 |
| Msa0430790 | Msa1171870 | 0.815573 | 8.626655e-52 | -8.615850e-47 |
| Msa0430790 | Msa1174040 | 0.804581 | 2.016432e-49 | -8.615850e-47 |
| Msa0430790 | Msa1186950 | -0.804353 | 2.249614e-49 | -8.615850e-47 |
| Msa0430790 | Msa1187840 | 0.800528 | 1.381667e-48 | -8.615850e-47 |
| Msa0430790 | Msa1199560 | 0.843098 | 1.726438e-58 | -8.615850e-47 |
| Msa0430790 | Msa1201560 | 0.802127 | 6.501195e-49 | -8.615850e-47 |
| Msa0430790 | Msa1211150 | -0.802629 | 5.123212e-49 | -8.615850e-47 |
| Msa0430790 | Msa1233890 | 0.828299 | 9.712331e-55 | -8.615850e-47 |
| Msa0430790 | Msa1267260 | 0.808682 | 2.746707e-50 | -8.615850e-47 |
| Msa0430790 | Msa1271210 | 0.816282 | 5.991808e-52 | -8.615850e-47 |
| Msa0430790 | Msa1279210 | 0.833104 | 6.458090e-56 | -8.615850e-47 |
| Msa0430790 | Msa1306430 | 0.815286 | 9.990275e-52 | -8.615850e-47 |
| Msa0430790 | Msa1306560 | 0.800287 | 1.547192e-48 | -8.615850e-47 |
| Msa0430790 | Msa1316780 | 0.809402 | 1.925911e-50 | -8.615850e-47 |
| Msa0430790 | Msa1316830 | 0.814484 | 1.504736e-51 | -8.615850e-47 |
| Msa0430790 | Msa1328700 | 0.843822 | 1.105953e-58 | -8.615850e-47 |
| Msa0430790 | Msa1336710 | 0.813950 | 1.974266e-51 | -8.615850e-47 |
| Msa0430790 | Msa1340020 | 0.805750 | 1.147980e-49 | -8.615850e-47 |
| Msa0430790 | Msa1340650 | 0.822325 | 2.516847e-53 | -8.615850e-47 |
| Msa0430790 | Msa1359040 | 0.802362 | 5.815699e-49 | -8.615850e-47 |
| Msa0430790 | Msa1369530 | 0.805063 | 1.599212e-49 | -8.615850e-47 |
| Msa0430790 | Msa1371430 | 0.821089 | 4.858743e-53 | -8.615850e-47 |
| Msa0430790 | Msa1386780 | 0.813416 | 2.587586e-51 | -8.615850e-47 |
| Msa0260210 | Msa0430790 | 0.805858 | 1.089376e-49 | -8.615850e-47 |
| Msa0265380 | Msa0430790 | 0.811642 | 6.321784e-51 | -8.615850e-47 |
| Msa0279790 | Msa0430790 | 0.801312 | 9.555744e-49 | -8.615850e-47 |
| Msa0282250 | Msa0430790 | 0.825818 | 3.808659e-54 | -8.615850e-47 |
| Msa0304290 | Msa0430790 | 0.803702 | 3.072627e-49 | -8.615850e-47 |
| Msa0304330 | Msa0430790 | 0.802295 | 6.002375e-49 | -8.615850e-47 |
| Msa0305890 | Msa0430790 | 0.807040 | 6.138169e-50 | -8.615850e-47 |
| Msa0336040 | Msa0430790 | -0.805387 | 1.367848e-49 | -8.615850e-47 |
| Msa0337620 | Msa0430790 | 0.816914 | 4.325332e-52 | -8.615850e-47 |
| Msa0340810 | Msa0430790 | 0.807287 | 5.442048e-50 | -8.615850e-47 |
| Msa0342360 | Msa0430790 | 0.802765 | 4.802564e-49 | -8.615850e-47 |
| Msa0344830 | Msa0430790 | 0.810811 | 9.571940e-51 | -8.615850e-47 |
| Msa0351080 | Msa0430790 | 0.808864 | 2.511904e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430790 | MtrunA17_Chr3g0134591 | 95.385 | 130 | 6 | 0 | 90 | 219 | 11 | 140 | 2.03e-86 | 252 |
| Msa0430790 | MtrunA17_Chr3g0134581 | 93.684 | 95 | 6 | 0 | 1 | 95 | 1 | 95 | 7.59e-59 | 180 |
| Msa0430790 | MtrunA17_Chr4g0010061 | 40.000 | 130 | 67 | 3 | 90 | 218 | 25 | 144 | 1.01e-24 | 95.1 |
| Msa0430790 | MtrunA17_Chr8g0346311 | 32.824 | 131 | 77 | 2 | 90 | 215 | 12 | 136 | 1.34e-22 | 89.4 |
| Msa0430790 | MtrunA17_Chr3g0127451 | 34.884 | 129 | 75 | 1 | 90 | 218 | 12 | 131 | 1.43e-22 | 89.0 |
| Msa0430790 | MtrunA17_Chr5g0419651 | 41.096 | 73 | 43 | 0 | 90 | 162 | 12 | 84 | 4.39e-20 | 82.4 |
| Msa0430790 | MtrunA17_Chr7g0276081 | 42.105 | 95 | 50 | 1 | 90 | 184 | 13 | 102 | 5.70e-20 | 82.4 |
| Msa0430790 | MtrunA17_Chr3g0115131 | 30.469 | 128 | 72 | 6 | 90 | 204 | 523 | 646 | 9.00e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0430790 | AT5G48810.1 | 43.411 | 129 | 66 | 3 | 90 | 218 | 12 | 133 | 3.42e-27 | 101 |
| Msa0430790 | AT2G32720.1 | 36.923 | 130 | 71 | 3 | 90 | 218 | 12 | 131 | 9.65e-24 | 92.4 |
| Msa0430790 | AT5G53560.1 | 36.667 | 120 | 63 | 3 | 90 | 207 | 12 | 120 | 6.35e-22 | 87.8 |
| Msa0430790 | AT1G26340.1 | 36.364 | 99 | 63 | 0 | 87 | 185 | 9 | 107 | 5.64e-19 | 80.1 |
| Msa0430790 | AT2G46650.1 | 41.892 | 74 | 43 | 0 | 90 | 163 | 9 | 82 | 1.45e-17 | 76.3 |
| Msa0430790 | AT2G32720.2 | 34.821 | 112 | 64 | 1 | 107 | 218 | 29 | 131 | 1.11e-16 | 73.9 |
Find 77 sgRNAs with CRISPR-Local
Find 286 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGGGACTTGGTTGGGGTTT+TGG | 0.178577 | 3_2:+82669108 | Msa0430790:CDS |
| CGTTGGAGTGGGACTTGGTT+GGG | 0.226520 | 3_2:+82669101 | Msa0430790:CDS |
| GTCCAAAACTGTGACATTTC+TGG | 0.242907 | 3_2:+82670967 | Msa0430790:CDS |
| TTCGGTGTTGGTTGCGGTTT+CGG | 0.256247 | 3_2:+82667724 | Msa0430790:CDS |
| TTCGGTGTTGGATGGGGTTT+CGG | 0.286806 | 3_2:+82667742 | Msa0430790:CDS |
| CTCCAGAAATGTCACAGTTT+TGG | 0.314257 | 3_2:-82670969 | None:intergenic |
| ACAGTATCTTAATTCTTAAC+TGG | 0.314778 | 3_2:+82667525 | Msa0430790:five_prime_UTR |
| AACGGTGCCGGCATCGGATT+TGG | 0.316824 | 3_2:+82667607 | Msa0430790:CDS |
| CCATTGAACTTCTTGGGTCT+TGG | 0.348663 | 3_2:+82668108 | Msa0430790:CDS |
| TCGGGTCTTGGGTCGAGATC+CGG | 0.355933 | 3_2:+82667435 | Msa0430790:five_prime_UTR |
| CTTAAGAGTGGATCGGGTCT+TGG | 0.360142 | 3_2:+82667423 | Msa0430790:five_prime_UTR |
| AGGAGTGGAATTTGATAGTA+AGG | 0.379797 | 3_2:+82669176 | Msa0430790:CDS |
| GTTGCGGTTTCGGTGTTGGA+TGG | 0.386697 | 3_2:+82667734 | Msa0430790:CDS |
| TTGCGGTTTCGGTGTTGGAT+GGG | 0.396660 | 3_2:+82667735 | Msa0430790:CDS |
| AGGTATGCCATTGAACTTCT+TGG | 0.399353 | 3_2:+82668101 | Msa0430790:intron |
| TGTGGCGTTGGAGTGGGACT+TGG | 0.400944 | 3_2:+82669096 | Msa0430790:CDS |
| CACAAGCAAACAGTCTTTGT+TGG | 0.402386 | 3_2:-82670594 | None:intergenic |
| AACTTCTTGGGTCTTGGTGC+AGG | 0.405749 | 3_2:+82668114 | Msa0430790:CDS |
| GCACTCATTTCTTTGCTCCT+TGG | 0.406374 | 3_2:-82670920 | None:intergenic |
| CGGGTCTTGGGTCGAGATCC+GGG | 0.413318 | 3_2:+82667436 | Msa0430790:five_prime_UTR |
| GTTGGATGTGACAAAGTTCT+TGG | 0.415632 | 3_2:+82670715 | Msa0430790:CDS |
| GTTGGAGTGGGACTTGGTTG+GGG | 0.418393 | 3_2:+82669102 | Msa0430790:CDS |
| TTAAGAGTGGATCGGGTCTT+GGG | 0.422044 | 3_2:+82667424 | Msa0430790:five_prime_UTR |
| TTGGTACTGCTTATGGTAGC+AGG | 0.426214 | 3_2:+82669127 | Msa0430790:CDS |
| ACAAAAGAAAAGAAAAGAAA+TGG | 0.430338 | 3_2:+82667570 | Msa0430790:exon |
| GATAGTAGAGGTTGCAGGGA+AGG | 0.432700 | 3_2:+82670763 | Msa0430790:CDS |
| GGTATGCCATTGAACTTCTT+GGG | 0.437229 | 3_2:+82668102 | Msa0430790:intron |
| GGAGGCTGTGGCGTTGGAGT+GGG | 0.439466 | 3_2:+82669090 | Msa0430790:CDS |
| ACTATCACTTCTTCTCCTCC+TGG | 0.441969 | 3_2:-82670746 | None:intergenic |
| TGGAGGCTGTGGCGTTGGAG+TGG | 0.449916 | 3_2:+82669089 | Msa0430790:CDS |
| GAAGTGATAGTAGAGGTTGC+AGG | 0.450461 | 3_2:+82670758 | Msa0430790:CDS |
| TAAGGAGAAAAGTGATAGCA+TGG | 0.453419 | 3_2:+82669194 | Msa0430790:CDS |
| GCGTTGGAGTGGGACTTGGT+TGG | 0.454156 | 3_2:+82669100 | Msa0430790:CDS |
| GCAGGTTTCGGTGTTGGTTG+CGG | 0.456771 | 3_2:+82667718 | Msa0430790:intron |
| GTTGGTTGCGGTTTCGGTGT+TGG | 0.457746 | 3_2:+82667730 | Msa0430790:CDS |
| AAGTGATAGTAGAGGTTGCA+GGG | 0.457992 | 3_2:+82670759 | Msa0430790:CDS |
| TGCGGTTTCGGTGTTGGATG+GGG | 0.461719 | 3_2:+82667736 | Msa0430790:CDS |
| GAAATTCTTAAGAGTGGATC+GGG | 0.462861 | 3_2:+82667417 | Msa0430790:five_prime_UTR |
| TGAATTTCTTACTTCTGGAC+TGG | 0.462985 | 3_2:-82669229 | None:intergenic |
| AATTTCAACGGTGCCGGCAT+CGG | 0.473678 | 3_2:+82667601 | Msa0430790:CDS |
| TACCAAGTGGGTGTACTTGA+AGG | 0.475745 | 3_2:+82670848 | Msa0430790:CDS |
| TGTGTGTGGACGGTAGAATT+TGG | 0.475975 | 3_2:-82667460 | None:intergenic |
| TGAAGGAGCCACGGTTGAAA+AGG | 0.476579 | 3_2:+82670865 | Msa0430790:CDS |
| TTGTCAAGGATCACATTTCA+AGG | 0.480370 | 3_2:+82669156 | Msa0430790:CDS |
| GACTGTTTGCTTGTGATCAA+CGG | 0.496871 | 3_2:+82670602 | Msa0430790:CDS |
| CTGCTTATGGTAGCAGGTAT+CGG | 0.496946 | 3_2:+82669133 | Msa0430790:CDS |
| ACAAAGGAATTTGATGCTGT+TGG | 0.500399 | 3_2:+82670791 | Msa0430790:CDS |
| AAGTTCTTGGAGGAACATCC+AGG | 0.502869 | 3_2:+82670728 | Msa0430790:CDS |
| TCTAAAGAAATTCTTAAGAG+TGG | 0.510953 | 3_2:+82667411 | None:intergenic |
| GCGGTAACCAAAATAGATAC+AGG | 0.512932 | 3_2:-82671014 | None:intergenic |
| ATCACAAATTTCAACGGTGC+CGG | 0.513111 | 3_2:+82667595 | Msa0430790:CDS |
| GCCACGGTTGAAAAGGTTGA+TGG | 0.515719 | 3_2:+82670872 | Msa0430790:CDS |
| CCAAGACCCAAGAAGTTCAA+TGG | 0.528859 | 3_2:-82668108 | None:intergenic |
| AGAAATTCTTAAGAGTGGAT+CGG | 0.529883 | 3_2:+82667416 | Msa0430790:five_prime_UTR |
| GGTTGAAAAGGTTGATGGTA+AGG | 0.532584 | 3_2:+82670877 | Msa0430790:CDS |
| GAAGGTGGAGGCTGTGGCGT+TGG | 0.533993 | 3_2:+82669084 | Msa0430790:intron |
| AGGAGAAGAAGTGATAGTAG+AGG | 0.537702 | 3_2:+82670751 | Msa0430790:CDS |
| TTGCATACCAAATCCGATGC+CGG | 0.555970 | 3_2:-82667614 | None:intergenic |
| TTTGTTTCTATGCAGAACAA+AGG | 0.556011 | 3_2:-82667552 | None:intergenic |
| GGTGTTGGATGGGGTTTCGG+AGG | 0.556898 | 3_2:+82667745 | Msa0430790:CDS |
| CTCCTTCAAGTACACCCACT+TGG | 0.569258 | 3_2:-82670850 | None:intergenic |
| AAGGATCACATTTCAAGGAG+TGG | 0.579480 | 3_2:+82669161 | Msa0430790:CDS |
| TGCAGGGAAGGATGCAACAA+AGG | 0.601258 | 3_2:+82670775 | Msa0430790:CDS |
| ATGGTAATCACAAATTTCAA+CGG | 0.616941 | 3_2:+82667589 | Msa0430790:CDS |
| TGATGGTAAGGATGTTGTTG+AGG | 0.621167 | 3_2:+82670889 | Msa0430790:CDS |
| TGGACGGTAGAATTTGGACC+CGG | 0.625245 | 3_2:-82667454 | None:intergenic |
| GTAGCAGGTATCGGTTGTCA+AGG | 0.627465 | 3_2:+82669142 | Msa0430790:CDS |
| GGATGTGACAAAGTTCTTGG+AGG | 0.640567 | 3_2:+82670718 | Msa0430790:CDS |
| ACAGTCTACTCTAGTGTGTG+TGG | 0.642109 | 3_2:-82667474 | None:intergenic |
| GGGTGTACTTGAAGGAGCCA+CGG | 0.643343 | 3_2:+82670856 | Msa0430790:CDS |
| TTTAGTCCTAAAATACCAAG+TGG | 0.646289 | 3_2:+82670835 | Msa0430790:CDS |
| TCTACTCTAGTGTGTGTGGA+CGG | 0.650622 | 3_2:-82667470 | None:intergenic |
| AGTAATCAACAGTGATGAGG+CGG | 0.662216 | 3_2:-82671033 | None:intergenic |
| TCTAGTAATCAACAGTGATG+AGG | 0.667000 | 3_2:-82671036 | None:intergenic |
| TTGTTGAGGACAATGAACCA+AGG | 0.717389 | 3_2:+82670903 | Msa0430790:CDS |
| TTAGTCCTAAAATACCAAGT+GGG | 0.719849 | 3_2:+82670836 | Msa0430790:CDS |
| TTCTTGGAGGAACATCCAGG+AGG | 0.763545 | 3_2:+82670731 | Msa0430790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAGTTAATACATATTATA+GGG | - | chr3_2:82670260-82670279 | None:intergenic | 10.0% |
| !! | AATAAGTTAATACATATTAT+AGG | - | chr3_2:82670261-82670280 | None:intergenic | 10.0% |
| !! | AAAAAAAATAGAAAAAGAGA+AGG | - | chr3_2:82668163-82668182 | None:intergenic | 15.0% |
| !!! | TTTGTTAGTCTTATTTAATA+AGG | + | chr3_2:82668914-82668933 | Msa0430790:intron | 15.0% |
| !! | ATTTAATAAGGATATCAATT+TGG | + | chr3_2:82668926-82668945 | Msa0430790:intron | 15.0% |
| !! | TGTTTCATTATAATCAAAAT+AGG | - | chr3_2:82669501-82669520 | None:intergenic | 15.0% |
| !! | AAATGTAATAATTTATAGTG+AGG | + | chr3_2:82669692-82669711 | Msa0430790:intron | 15.0% |
| !!! | AAATAATGAAAACAATGTTT+TGG | - | chr3_2:82669874-82669893 | None:intergenic | 15.0% |
| !! | TATACAAAATTGAATTTAAC+CGG | + | chr3_2:82670023-82670042 | Msa0430790:intron | 15.0% |
| !!! | TTTTTACCTGATATATTTTA+GGG | - | chr3_2:82670143-82670162 | None:intergenic | 15.0% |
| !! | TAAAAAACAATGACTAAAAA+AGG | + | chr3_2:82670179-82670198 | Msa0430790:intron | 15.0% |
| !! | ACAAAAGAAAAGAAAAGAAA+TGG | + | chr3_2:82667570-82667589 | Msa0430790:exon | 20.0% |
| !!! | TTTCATTTCTCAATTCTTTT+AGG | + | chr3_2:82667786-82667805 | Msa0430790:intron | 20.0% |
| !! | GAAATTAATAGAAAAAGAGA+AGG | - | chr3_2:82668194-82668213 | None:intergenic | 20.0% |
| !! | TTTCAATTCTCAGTATTTAA+TGG | + | chr3_2:82668210-82668229 | Msa0430790:intron | 20.0% |
| !! | TATCATGTATGTTAATTTCT+AGG | + | chr3_2:82668279-82668298 | Msa0430790:intron | 20.0% |
| !! | AAATAAAAAATCAGTGTAGA+GGG | + | chr3_2:82668745-82668764 | Msa0430790:intron | 20.0% |
| !! | AATTCCATCAAATCTAATAA+TGG | - | chr3_2:82668772-82668791 | None:intergenic | 20.0% |
| !! | GAATCAATGATTTATTAGAT+AGG | + | chr3_2:82668952-82668971 | Msa0430790:intron | 20.0% |
| !! | TTAGTAGTTTATGAAATGAA+TGG | + | chr3_2:82669432-82669451 | Msa0430790:intron | 20.0% |
| !!! | TTTAGTGAATATTTCTGATA+GGG | - | chr3_2:82669943-82669962 | None:intergenic | 20.0% |
| !!! | TTTTAGTGAATATTTCTGAT+AGG | - | chr3_2:82669944-82669963 | None:intergenic | 20.0% |
| !! | ATCTACAAAACTTCAAATTA+AGG | - | chr3_2:82670085-82670104 | None:intergenic | 20.0% |
| !!! | CTTTTTACCTGATATATTTT+AGG | - | chr3_2:82670144-82670163 | None:intergenic | 20.0% |
| !!! | TTTAATTTACTAGTAGTGAA+TGG | - | chr3_2:82670646-82670665 | None:intergenic | 20.0% |
| !!! | TACTTGAATTTTTGATTTGT+AGG | + | chr3_2:82670691-82670710 | Msa0430790:intron | 20.0% |
| ! | ACAGTATCTTAATTCTTAAC+TGG | + | chr3_2:82667525-82667544 | Msa0430790:five_prime_UTR | 25.0% |
| ! | ATGGTAATCACAAATTTCAA+CGG | + | chr3_2:82667589-82667608 | Msa0430790:CDS | 25.0% |
| !! | TTTTATTCTTTTGCAGGTTT+CGG | + | chr3_2:82667706-82667725 | Msa0430790:intron | 25.0% |
| ! | ATGAAATTGAAGGATTGAAA+CGG | - | chr3_2:82667772-82667791 | None:intergenic | 25.0% |
| ! | GAATTGAGAAATGAAATTGA+AGG | - | chr3_2:82667782-82667801 | None:intergenic | 25.0% |
| ! | AGTAACAAAAACTGAACAAT+AGG | - | chr3_2:82667920-82667939 | None:intergenic | 25.0% |
| ! | GAAATTAACATACATGATAC+TGG | - | chr3_2:82668278-82668297 | None:intergenic | 25.0% |
| ! | ATATGGTTGACAACAATATT+AGG | + | chr3_2:82668322-82668341 | Msa0430790:intron | 25.0% |
| !! | TCTAGAAATAAGGATTTTTG+AGG | - | chr3_2:82668352-82668371 | None:intergenic | 25.0% |
| !! | TATGCATAACTCTAGAAATA+AGG | - | chr3_2:82668362-82668381 | None:intergenic | 25.0% |
| ! | AAGAAATTGAAGAGAAATAC+CGG | - | chr3_2:82668498-82668517 | None:intergenic | 25.0% |
| ! | GAAATAAAAAATCAGTGTAG+AGG | + | chr3_2:82668744-82668763 | Msa0430790:intron | 25.0% |
| ! | TAAAAGAAAGCAACCTATTA+TGG | + | chr3_2:82668813-82668832 | Msa0430790:intron | 25.0% |
| !!! | TGCAAATAATAGTCATTTTG+TGG | - | chr3_2:82669010-82669029 | None:intergenic | 25.0% |
| ! | CAAAATGACTATTATTTGCA+AGG | + | chr3_2:82669010-82669029 | Msa0430790:intron | 25.0% |
| !! | TATGCTCAATTTCATTTTGA+AGG | + | chr3_2:82669066-82669085 | Msa0430790:intron | 25.0% |
| ! | AGCAATCTACATTAAATTGA+AGG | - | chr3_2:82669277-82669296 | None:intergenic | 25.0% |
| !! | ATATTTCTGATAGGGTTATT+GGG | - | chr3_2:82669935-82669954 | None:intergenic | 25.0% |
| !! | AATATTTCTGATAGGGTTAT+TGG | - | chr3_2:82669936-82669955 | None:intergenic | 25.0% |
| !! | TGAAAAAGAGTGTAATTTGA+AGG | + | chr3_2:82670104-82670123 | Msa0430790:intron | 25.0% |
| !! | GAAAAAGAGTGTAATTTGAA+GGG | + | chr3_2:82670105-82670124 | Msa0430790:intron | 25.0% |
| !! | AAAAAGAGTGTAATTTGAAG+GGG | + | chr3_2:82670106-82670125 | Msa0430790:intron | 25.0% |
| ! | ATATTATAGGGCATAGTAAT+AGG | - | chr3_2:82670248-82670267 | None:intergenic | 25.0% |
| ! | GAAAATTGAAACAATAAGCT+TGG | - | chr3_2:82670472-82670491 | None:intergenic | 25.0% |
| !!! | AATTTTTGATTTGTAGGTGT+TGG | + | chr3_2:82670697-82670716 | Msa0430790:intron | 25.0% |
| ! | TAGATACAGGCAAAAATAAT+TGG | - | chr3_2:82671004-82671023 | None:intergenic | 25.0% |
| !! | ATTTTTGCCTGTATCTATTT+TGG | + | chr3_2:82671007-82671026 | Msa0430790:CDS | 25.0% |
| AGAAATTCTTAAGAGTGGAT+CGG | + | chr3_2:82667416-82667435 | Msa0430790:five_prime_UTR | 30.0% | |
| !! | TTTGTTTCTATGCAGAACAA+AGG | - | chr3_2:82667555-82667574 | None:intergenic | 30.0% |
| AATGGATGAATGTTGAGAAA+TGG | - | chr3_2:82667652-82667671 | None:intergenic | 30.0% | |
| AATTAGATAGAGATTGGAGA+AGG | - | chr3_2:82667677-82667696 | None:intergenic | 30.0% | |
| !!! | GCTGTTTTTTATTCTTTTGC+AGG | + | chr3_2:82667700-82667719 | Msa0430790:intron | 30.0% |
| TCACTTTAGACAAATTCGTT+AGG | + | chr3_2:82667876-82667895 | Msa0430790:intron | 30.0% | |
| ! | TCTGATCTTTTGTCTTTATC+TGG | + | chr3_2:82668073-82668092 | Msa0430790:intron | 30.0% |
| ATTCTCAGTATTTAATGGCT+AGG | + | chr3_2:82668215-82668234 | Msa0430790:intron | 30.0% | |
| !!! | ATACATGATACTGGTTTTGA+AGG | - | chr3_2:82668269-82668288 | None:intergenic | 30.0% |
| ! | CATTGTTTCGCTGAATTTTA+AGG | + | chr3_2:82668552-82668571 | Msa0430790:intron | 30.0% |
| GAGTCATAAACATTTGATGT+AGG | - | chr3_2:82668858-82668877 | None:intergenic | 30.0% | |
| GTTGTTAATGTTTATCCTTC+TGG | + | chr3_2:82668890-82668909 | Msa0430790:intron | 30.0% | |
| ATAAGACTAACAAAACCAGA+AGG | - | chr3_2:82668908-82668927 | None:intergenic | 30.0% | |
| TATCGTGAATTTCTTACTTC+TGG | - | chr3_2:82669237-82669256 | None:intergenic | 30.0% | |
| AGAAGTAAGAAATTCACGAT+AGG | + | chr3_2:82669236-82669255 | Msa0430790:intron | 30.0% | |
| !!! | TAAAAGCATTTTGGTTCTCA+TGG | - | chr3_2:82669636-82669655 | None:intergenic | 30.0% |
| ! | CATTGATGATATTTACTGCT+GGG | - | chr3_2:82669662-82669681 | None:intergenic | 30.0% |
| CTTTCGTTTATAATTGAGAC+TGG | + | chr3_2:82669987-82670006 | Msa0430790:intron | 30.0% | |
| AAACCTCCCTAAAATATATC+AGG | + | chr3_2:82670134-82670153 | Msa0430790:intron | 30.0% | |
| !! | TTACCTGATATATTTTAGGG+AGG | - | chr3_2:82670140-82670159 | None:intergenic | 30.0% |
| !!! | TAAATGAGATTTTGGCTTTG+AGG | - | chr3_2:82670520-82670539 | None:intergenic | 30.0% |
| ! | CATGGTTGTAAATGAGATTT+TGG | - | chr3_2:82670528-82670547 | None:intergenic | 30.0% |
| CAAAATCTCATTTACAACCA+TGG | + | chr3_2:82670526-82670545 | Msa0430790:intron | 30.0% | |
| TTTAGTCCTAAAATACCAAG+TGG | + | chr3_2:82670835-82670854 | Msa0430790:CDS | 30.0% | |
| TTAGTCCTAAAATACCAAGT+GGG | + | chr3_2:82670836-82670855 | Msa0430790:CDS | 30.0% | |
| GAAATTCTTAAGAGTGGATC+GGG | + | chr3_2:82667417-82667436 | Msa0430790:five_prime_UTR | 35.0% | |
| AGCGTGAATTAGATAGAGAT+TGG | - | chr3_2:82667683-82667702 | None:intergenic | 35.0% | |
| AATAAGAAAAGTGACGAGAG+CGG | - | chr3_2:82668036-82668055 | None:intergenic | 35.0% | |
| !! | CTAGGCTTGCTATATGATAT+GGG | + | chr3_2:82668233-82668252 | Msa0430790:intron | 35.0% |
| TATATGTTGCCTTGATGTAG+AGG | - | chr3_2:82668305-82668324 | None:intergenic | 35.0% | |
| CTACATCAAGGCAACATATA+TGG | + | chr3_2:82668305-82668324 | Msa0430790:intron | 35.0% | |
| TGGTTGACAACAATATTAGG+TGG | + | chr3_2:82668325-82668344 | Msa0430790:intron | 35.0% | |
| TCCAATGTGATTCCCAATAT+AGG | + | chr3_2:82668405-82668424 | Msa0430790:intron | 35.0% | |
| CCAATGTGATTCCCAATATA+GGG | + | chr3_2:82668406-82668425 | Msa0430790:intron | 35.0% | |
| !! | TGTTTCGCTGAATTTTAAGG+TGG | + | chr3_2:82668555-82668574 | Msa0430790:intron | 35.0% |
| !!! | GTTTCGCTGAATTTTAAGGT+GGG | + | chr3_2:82668556-82668575 | Msa0430790:intron | 35.0% |
| ACTTTGACAGTGATGGTTAT+GGG | + | chr3_2:82668632-82668651 | Msa0430790:intron | 35.0% | |
| TCAATCATGCTGGATGTTAT+GGG | - | chr3_2:82668711-82668730 | None:intergenic | 35.0% | |
| GGGTCCATTATTAGATTTGA+TGG | + | chr3_2:82668765-82668784 | Msa0430790:intron | 35.0% | |
| !! | TCTATGATGGACACCATAAT+AGG | - | chr3_2:82668829-82668848 | None:intergenic | 35.0% |
| ATGTAGGACAATGTCTATGA+TGG | - | chr3_2:82668842-82668861 | None:intergenic | 35.0% | |
| CATTAACAACCAAGTCACTA+CGG | - | chr3_2:82668880-82668899 | None:intergenic | 35.0% | |
| !! | AGTCATTTTGTGGTTACAGT+GGG | - | chr3_2:82669000-82669019 | None:intergenic | 35.0% |
| !! | TAGTCATTTTGTGGTTACAG+TGG | - | chr3_2:82669001-82669020 | None:intergenic | 35.0% |
| !! | GCTCAATTTCATTTTGAAGG+TGG | + | chr3_2:82669069-82669088 | Msa0430790:intron | 35.0% |
| !! | CAATTTCATTTTGAAGGTGG+AGG | + | chr3_2:82669072-82669091 | Msa0430790:intron | 35.0% |
| TTGTCAAGGATCACATTTCA+AGG | + | chr3_2:82669156-82669175 | Msa0430790:CDS | 35.0% | |
| ! | AGGAGTGGAATTTGATAGTA+AGG | + | chr3_2:82669176-82669195 | Msa0430790:CDS | 35.0% |
| TAAGGAGAAAAGTGATAGCA+TGG | + | chr3_2:82669194-82669213 | Msa0430790:CDS | 35.0% | |
| TGAATTTCTTACTTCTGGAC+TGG | - | chr3_2:82669232-82669251 | None:intergenic | 35.0% | |
| ! | TTCATGTTATTTGTGTCCGT+AGG | - | chr3_2:82669346-82669365 | None:intergenic | 35.0% |
| ACACAAATAACATGAAGCCT+GGG | + | chr3_2:82669350-82669369 | Msa0430790:intron | 35.0% | |
| !!! | GAATGGTACTGTTATTTTGC+TGG | + | chr3_2:82669449-82669468 | Msa0430790:intron | 35.0% |
| ! | CCATTGATGATATTTACTGC+TGG | - | chr3_2:82669663-82669682 | None:intergenic | 35.0% |
| CCAGCAGTAAATATCATCAA+TGG | + | chr3_2:82669660-82669679 | Msa0430790:intron | 35.0% | |
| !! | TTAACCGGTTTGAACAGAAT+TGG | + | chr3_2:82670038-82670057 | Msa0430790:intron | 35.0% |
| CAAACAATCTTACGACGTAT+CGG | - | chr3_2:82670363-82670382 | None:intergenic | 35.0% | |
| TGTGGTAGTACATATAACGA+AGG | - | chr3_2:82670426-82670445 | None:intergenic | 35.0% | |
| TTGGTACTTTATAGACAGAG+TGG | - | chr3_2:82670453-82670472 | None:intergenic | 35.0% | |
| !! | GAAAACTCTTTGATTTGCCA+TGG | - | chr3_2:82670546-82670565 | None:intergenic | 35.0% |
| ACAAAGGAATTTGATGCTGT+TGG | + | chr3_2:82670791-82670810 | Msa0430790:CDS | 35.0% | |
| ATCACAAATTTCAACGGTGC+CGG | + | chr3_2:82667595-82667614 | Msa0430790:CDS | 40.0% | |
| TAGAGATTGGAGAAGGTGAA+TGG | - | chr3_2:82667670-82667689 | None:intergenic | 40.0% | |
| TTTAGGCTGCAATTTGACGT+TGG | + | chr3_2:82667803-82667822 | Msa0430790:intron | 40.0% | |
| ATAAGAAAAGTGACGAGAGC+GGG | - | chr3_2:82668035-82668054 | None:intergenic | 40.0% | |
| TTTGTCTTTATCTGGTGCAC+AGG | + | chr3_2:82668081-82668100 | Msa0430790:intron | 40.0% | |
| AGGTATGCCATTGAACTTCT+TGG | + | chr3_2:82668101-82668120 | Msa0430790:intron | 40.0% | |
| GGTATGCCATTGAACTTCTT+GGG | + | chr3_2:82668102-82668121 | Msa0430790:intron | 40.0% | |
| !! | GCTAGGCTTGCTATATGATA+TGG | + | chr3_2:82668232-82668251 | Msa0430790:intron | 40.0% |
| ! | ATTTCTAGGCCTCTACATCA+AGG | + | chr3_2:82668293-82668312 | Msa0430790:intron | 40.0% |
| AGAGTTATGCATAACCCCAA+CGG | + | chr3_2:82668369-82668388 | Msa0430790:intron | 40.0% | |
| CCCTATATTGGGAATCACAT+TGG | - | chr3_2:82668409-82668428 | None:intergenic | 40.0% | |
| !! | CTGATTTGGGACCCTATATT+GGG | - | chr3_2:82668420-82668439 | None:intergenic | 40.0% |
| AATCGTCAAGTGCCTGATTT+GGG | - | chr3_2:82668433-82668452 | None:intergenic | 40.0% | |
| !!! | TGAATTTTAAGGTGGGTGGA+GGG | + | chr3_2:82668563-82668582 | Msa0430790:intron | 40.0% |
| ATTGTGAGAGAATCCCAACT+GGG | + | chr3_2:82668596-82668615 | Msa0430790:intron | 40.0% | |
| TAACCATCACTGTCAAAGTG+CGG | - | chr3_2:82668631-82668650 | None:intergenic | 40.0% | |
| CACTTTGACAGTGATGGTTA+TGG | + | chr3_2:82668631-82668650 | Msa0430790:intron | 40.0% | |
| CTCAATCATGCTGGATGTTA+TGG | - | chr3_2:82668712-82668731 | None:intergenic | 40.0% | |
| ATCCAGCATGATTGAGAGAA+TGG | + | chr3_2:82668716-82668735 | Msa0430790:intron | 40.0% | |
| GATGGAATTGCAAGATCTAG+TGG | + | chr3_2:82668783-82668802 | Msa0430790:intron | 40.0% | |
| TTTATGACTCCGTAGTGACT+TGG | + | chr3_2:82668868-82668887 | Msa0430790:intron | 40.0% | |
| TAGGTTTCCTTAATTCCCCT+AGG | + | chr3_2:82668971-82668990 | Msa0430790:intron | 40.0% | |
| ! | TCATTTTGTGGTTACAGTGG+GGG | - | chr3_2:82668998-82669017 | None:intergenic | 40.0% |
| !! | GTCATTTTGTGGTTACAGTG+GGG | - | chr3_2:82668999-82669018 | None:intergenic | 40.0% |
| AAGGATCACATTTCAAGGAG+TGG | + | chr3_2:82669161-82669180 | Msa0430790:CDS | 40.0% | |
| AGATTGCTACCACCTATTAC+TGG | + | chr3_2:82669289-82669308 | Msa0430790:intron | 40.0% | |
| TATTTGTGTCCGTAGGCATA+GGG | - | chr3_2:82669339-82669358 | None:intergenic | 40.0% | |
| TTATTTGTGTCCGTAGGCAT+AGG | - | chr3_2:82669340-82669359 | None:intergenic | 40.0% | |
| GACACAAATAACATGAAGCC+TGG | + | chr3_2:82669349-82669368 | Msa0430790:intron | 40.0% | |
| CACAAATAACATGAAGCCTG+GGG | + | chr3_2:82669351-82669370 | Msa0430790:intron | 40.0% | |
| CAAGATTTGTATATCTCCCC+AGG | - | chr3_2:82669370-82669389 | None:intergenic | 40.0% | |
| !!! | AGCATTTTGGTTCTCATGGA+TGG | - | chr3_2:82669632-82669651 | None:intergenic | 40.0% |
| !!! | GCTGGGTTGTAAAAGCATTT+TGG | - | chr3_2:82669645-82669664 | None:intergenic | 40.0% |
| GAGTCCAATTCTGTTCAAAC+CGG | - | chr3_2:82670045-82670064 | None:intergenic | 40.0% | |
| GTTTGATCTTCCTATCCAAG+TGG | + | chr3_2:82670378-82670397 | Msa0430790:intron | 40.0% | |
| TATAGACAGAGTGGTAGATG+TGG | - | chr3_2:82670444-82670463 | None:intergenic | 40.0% | |
| CACAAGCAAACAGTCTTTGT+TGG | - | chr3_2:82670597-82670616 | None:intergenic | 40.0% | |
| GACTGTTTGCTTGTGATCAA+CGG | + | chr3_2:82670602-82670621 | Msa0430790:CDS | 40.0% | |
| GTTGGATGTGACAAAGTTCT+TGG | + | chr3_2:82670715-82670734 | Msa0430790:CDS | 40.0% | |
| AGGAGAAGAAGTGATAGTAG+AGG | + | chr3_2:82670751-82670770 | Msa0430790:CDS | 40.0% | |
| AAGTGATAGTAGAGGTTGCA+GGG | + | chr3_2:82670759-82670778 | Msa0430790:CDS | 40.0% | |
| ! | GTACACCCACTTGGTATTTT+AGG | - | chr3_2:82670844-82670863 | None:intergenic | 40.0% |
| !! | GGTTGAAAAGGTTGATGGTA+AGG | + | chr3_2:82670877-82670896 | Msa0430790:CDS | 40.0% |
| TGATGGTAAGGATGTTGTTG+AGG | + | chr3_2:82670889-82670908 | Msa0430790:CDS | 40.0% | |
| TTGTTGAGGACAATGAACCA+AGG | + | chr3_2:82670903-82670922 | Msa0430790:CDS | 40.0% | |
| ! | GAGTGCTTTTGTGATCAAAG+AGG | + | chr3_2:82670937-82670956 | Msa0430790:CDS | 40.0% |
| GTCCAAAACTGTGACATTTC+TGG | + | chr3_2:82670967-82670986 | Msa0430790:CDS | 40.0% | |
| ! | CTCCAGAAATGTCACAGTTT+TGG | - | chr3_2:82670972-82670991 | None:intergenic | 40.0% |
| GCGGTAACCAAAATAGATAC+AGG | - | chr3_2:82671017-82671036 | None:intergenic | 40.0% | |
| AGTAATCAACAGTGATGAGG+CGG | - | chr3_2:82671036-82671055 | None:intergenic | 40.0% | |
| TTAAGAGTGGATCGGGTCTT+GGG | + | chr3_2:82667424-82667443 | Msa0430790:five_prime_UTR | 45.0% | |
| TGTGTGTGGACGGTAGAATT+TGG | - | chr3_2:82667463-82667482 | None:intergenic | 45.0% | |
| TCTACTCTAGTGTGTGTGGA+CGG | - | chr3_2:82667473-82667492 | None:intergenic | 45.0% | |
| ACAGTCTACTCTAGTGTGTG+TGG | - | chr3_2:82667477-82667496 | None:intergenic | 45.0% | |
| TTGCATACCAAATCCGATGC+CGG | - | chr3_2:82667617-82667636 | None:intergenic | 45.0% | |
| !! | TCTTTTGCAGGTTTCGGTGT+TGG | + | chr3_2:82667712-82667731 | Msa0430790:intron | 45.0% |
| TAAGAAAAGTGACGAGAGCG+GGG | - | chr3_2:82668034-82668053 | None:intergenic | 45.0% | |
| CCAAGACCCAAGAAGTTCAA+TGG | - | chr3_2:82668111-82668130 | None:intergenic | 45.0% | |
| CCATTGAACTTCTTGGGTCT+TGG | + | chr3_2:82668108-82668127 | Msa0430790:CDS | 45.0% | |
| ACTCTAATAACACGCCGTTG+GGG | - | chr3_2:82668386-82668405 | None:intergenic | 45.0% | |
| GACTCTAATAACACGCCGTT+GGG | - | chr3_2:82668387-82668406 | None:intergenic | 45.0% | |
| !! | CCTGATTTGGGACCCTATAT+TGG | - | chr3_2:82668421-82668440 | None:intergenic | 45.0% |
| CCAATATAGGGTCCCAAATC+AGG | + | chr3_2:82668418-82668437 | Msa0430790:intron | 45.0% | |
| CAATCGTCAAGTGCCTGATT+TGG | - | chr3_2:82668434-82668453 | None:intergenic | 45.0% | |
| CAAATCAGGCACTTGACGAT+TGG | + | chr3_2:82668432-82668451 | Msa0430790:intron | 45.0% | |
| AAATACCGGAGAACAAGCGT+TGG | - | chr3_2:82668484-82668503 | None:intergenic | 45.0% | |
| TCTTGTACTTCAACGTCGTG+TGG | + | chr3_2:82668514-82668533 | Msa0430790:intron | 45.0% | |
| CTTGTACTTCAACGTCGTGT+GGG | + | chr3_2:82668515-82668534 | Msa0430790:intron | 45.0% | |
| TTGTACTTCAACGTCGTGTG+GGG | + | chr3_2:82668516-82668535 | Msa0430790:intron | 45.0% | |
| !!! | TCGCTGAATTTTAAGGTGGG+TGG | + | chr3_2:82668559-82668578 | Msa0430790:intron | 45.0% |
| !!! | CTGAATTTTAAGGTGGGTGG+AGG | + | chr3_2:82668562-82668581 | Msa0430790:intron | 45.0% |
| GGATTCTCTCACAATGGAAC+CGG | - | chr3_2:82668591-82668610 | None:intergenic | 45.0% | |
| CAGTTGGGATTCTCTCACAA+TGG | - | chr3_2:82668597-82668616 | None:intergenic | 45.0% | |
| CATTGTGAGAGAATCCCAAC+TGG | + | chr3_2:82668595-82668614 | Msa0430790:intron | 45.0% | |
| GACAGTGATGGTTATGGGAT+TGG | + | chr3_2:82668637-82668656 | Msa0430790:intron | 45.0% | |
| AGTGATGGTTATGGGATTGG+AGG | + | chr3_2:82668640-82668659 | Msa0430790:intron | 45.0% | |
| GTTATGGGATTGGAGGAAAC+AGG | + | chr3_2:82668647-82668666 | Msa0430790:intron | 45.0% | |
| ! | GAAACAGGAACGGTACTGAA+TGG | + | chr3_2:82668662-82668681 | Msa0430790:intron | 45.0% |
| CTCCATTCTCTCAATCATGC+TGG | - | chr3_2:82668721-82668740 | None:intergenic | 45.0% | |
| CAGCATGATTGAGAGAATGG+AGG | + | chr3_2:82668719-82668738 | Msa0430790:intron | 45.0% | |
| ! | CATTTTGTGGTTACAGTGGG+GGG | - | chr3_2:82668997-82669016 | None:intergenic | 45.0% |
| !! | TGGGGTTTTGGTACTGCTTA+TGG | + | chr3_2:82669120-82669139 | Msa0430790:CDS | 45.0% |
| TTGGTACTGCTTATGGTAGC+AGG | + | chr3_2:82669127-82669146 | Msa0430790:CDS | 45.0% | |
| CTGCTTATGGTAGCAGGTAT+CGG | + | chr3_2:82669133-82669152 | Msa0430790:CDS | 45.0% | |
| TGCTACCACCTATTACTGGT+CGG | + | chr3_2:82669293-82669312 | Msa0430790:intron | 45.0% | |
| ATAGGGTTATTGGGAGAAGG+TGG | - | chr3_2:82669926-82669945 | None:intergenic | 45.0% | |
| CTGATAGGGTTATTGGGAGA+AGG | - | chr3_2:82669929-82669948 | None:intergenic | 45.0% | |
| ATTGCACAAGTTGTGGTACG+TGG | - | chr3_2:82670301-82670320 | None:intergenic | 45.0% | |
| CATGCACATTGCACAAGTTG+TGG | - | chr3_2:82670308-82670327 | None:intergenic | 45.0% | |
| ! | ACGACGTATCGGTCGTTTAT+TGG | - | chr3_2:82670352-82670371 | None:intergenic | 45.0% |
| GATCTTCCTATCCAAGTGGT+AGG | + | chr3_2:82670382-82670401 | Msa0430790:intron | 45.0% | |
| AGTCTACCTACCACTTGGAT+AGG | - | chr3_2:82670391-82670410 | None:intergenic | 45.0% | |
| TATCCAAGTGGTAGGTAGAC+TGG | + | chr3_2:82670390-82670409 | Msa0430790:intron | 45.0% | |
| GGATGTGACAAAGTTCTTGG+AGG | + | chr3_2:82670718-82670737 | Msa0430790:CDS | 45.0% | |
| AAGTTCTTGGAGGAACATCC+AGG | + | chr3_2:82670728-82670747 | Msa0430790:CDS | 45.0% | |
| ACTATCACTTCTTCTCCTCC+TGG | - | chr3_2:82670749-82670768 | None:intergenic | 45.0% | |
| GAAGTGATAGTAGAGGTTGC+AGG | + | chr3_2:82670758-82670777 | Msa0430790:CDS | 45.0% | |
| TACCAAGTGGGTGTACTTGA+AGG | + | chr3_2:82670848-82670867 | Msa0430790:CDS | 45.0% | |
| ! | ACCATCAACCTTTTCAACCG+TGG | - | chr3_2:82670876-82670895 | None:intergenic | 45.0% |
| GCACTCATTTCTTTGCTCCT+TGG | - | chr3_2:82670923-82670942 | None:intergenic | 45.0% | |
| CTTAAGAGTGGATCGGGTCT+TGG | + | chr3_2:82667423-82667442 | Msa0430790:five_prime_UTR | 50.0% | |
| TGGACGGTAGAATTTGGACC+CGG | - | chr3_2:82667457-82667476 | None:intergenic | 50.0% | |
| !! | AATTTCAACGGTGCCGGCAT+CGG | + | chr3_2:82667601-82667620 | Msa0430790:CDS | 50.0% |
| !! | TTCGGTGTTGGTTGCGGTTT+CGG | + | chr3_2:82667724-82667743 | Msa0430790:CDS | 50.0% |
| !! | TTGCGGTTTCGGTGTTGGAT+GGG | + | chr3_2:82667735-82667754 | Msa0430790:CDS | 50.0% |
| !! | TTCGGTGTTGGATGGGGTTT+CGG | + | chr3_2:82667742-82667761 | Msa0430790:CDS | 50.0% |
| ! | AACTTCTTGGGTCTTGGTGC+AGG | + | chr3_2:82668114-82668133 | Msa0430790:CDS | 50.0% |
| GGACTCTAATAACACGCCGT+TGG | - | chr3_2:82668388-82668407 | None:intergenic | 50.0% | |
| TCACCGCACTTTGACAGTGA+TGG | + | chr3_2:82668625-82668644 | Msa0430790:intron | 50.0% | |
| GGGATTGGAGGAAACAGGAA+CGG | + | chr3_2:82668652-82668671 | Msa0430790:intron | 50.0% | |
| !! | CATTTTGAAGGTGGAGGCTG+TGG | + | chr3_2:82669078-82669097 | Msa0430790:intron | 50.0% |
| !! | GTAGCAGGTATCGGTTGTCA+AGG | + | chr3_2:82669142-82669161 | Msa0430790:CDS | 50.0% |
| GGTTATTGGGAGAAGGTGGA+AGG | - | chr3_2:82669922-82669941 | None:intergenic | 50.0% | |
| CTACCAGTCTACCTACCACT+TGG | - | chr3_2:82670396-82670415 | None:intergenic | 50.0% | |
| GCGTTGAGAGATCTGTGAGA+GGG | - | chr3_2:82670570-82670589 | None:intergenic | 50.0% | |
| TGCGTTGAGAGATCTGTGAG+AGG | - | chr3_2:82670571-82670590 | None:intergenic | 50.0% | |
| TTCTTGGAGGAACATCCAGG+AGG | + | chr3_2:82670731-82670750 | Msa0430790:CDS | 50.0% | |
| GATAGTAGAGGTTGCAGGGA+AGG | + | chr3_2:82670763-82670782 | Msa0430790:CDS | 50.0% | |
| TGCAGGGAAGGATGCAACAA+AGG | + | chr3_2:82670775-82670794 | Msa0430790:CDS | 50.0% | |
| CTCCTTCAAGTACACCCACT+TGG | - | chr3_2:82670853-82670872 | None:intergenic | 50.0% | |
| TGAAGGAGCCACGGTTGAAA+AGG | + | chr3_2:82670865-82670884 | Msa0430790:CDS | 50.0% | |
| GCCACGGTTGAAAAGGTTGA+TGG | + | chr3_2:82670872-82670891 | Msa0430790:CDS | 50.0% | |
| !! | GCAGGTTTCGGTGTTGGTTG+CGG | + | chr3_2:82667718-82667737 | Msa0430790:intron | 55.0% |
| ! | GTTGGTTGCGGTTTCGGTGT+TGG | + | chr3_2:82667730-82667749 | Msa0430790:CDS | 55.0% |
| !! | GTTGCGGTTTCGGTGTTGGA+TGG | + | chr3_2:82667734-82667753 | Msa0430790:CDS | 55.0% |
| !! | TGCGGTTTCGGTGTTGGATG+GGG | + | chr3_2:82667736-82667755 | Msa0430790:CDS | 55.0% |
| AAAAGTGACGAGAGCGGGGT+GGG | - | chr3_2:82668030-82668049 | None:intergenic | 55.0% | |
| GCGTTCCAACGCTTGTTCTC+CGG | + | chr3_2:82668476-82668495 | Msa0430790:intron | 55.0% | |
| ACGTCGTGTGGGGAGCAAAA+TGG | + | chr3_2:82668526-82668545 | Msa0430790:intron | 55.0% | |
| TTAAGGTGGGTGGAGGGTTC+CGG | + | chr3_2:82668569-82668588 | Msa0430790:intron | 55.0% | |
| GCGGTGAAGCAAACCCAGTT+GGG | - | chr3_2:82668612-82668631 | None:intergenic | 55.0% | |
| TGCGGTGAAGCAAACCCAGT+TGG | - | chr3_2:82668613-82668632 | None:intergenic | 55.0% | |
| ! | CAGGAACGGTACTGAATGGC+TGG | + | chr3_2:82668666-82668685 | Msa0430790:intron | 55.0% |
| ! | CGTTGGAGTGGGACTTGGTT+GGG | + | chr3_2:82669101-82669120 | Msa0430790:CDS | 55.0% |
| ! | GTTGGAGTGGGACTTGGTTG+GGG | + | chr3_2:82669102-82669121 | Msa0430790:CDS | 55.0% |
| !! | GTGGGACTTGGTTGGGGTTT+TGG | + | chr3_2:82669108-82669127 | Msa0430790:CDS | 55.0% |
| CATGGCCGACCAGTAATAGG+TGG | - | chr3_2:82669301-82669320 | None:intergenic | 55.0% | |
| GCTCATGGCCGACCAGTAAT+AGG | - | chr3_2:82669304-82669323 | None:intergenic | 55.0% | |
| ATTACTGGTCGGCCATGAGC+AGG | + | chr3_2:82669304-82669323 | Msa0430790:intron | 55.0% | |
| TTACTGGTCGGCCATGAGCA+GGG | + | chr3_2:82669305-82669324 | Msa0430790:intron | 55.0% | |
| GTTGCATGGCCCTATGCCTA+CGG | + | chr3_2:82669327-82669346 | Msa0430790:intron | 55.0% | |
| GGGTGTACTTGAAGGAGCCA+CGG | + | chr3_2:82670856-82670875 | Msa0430790:CDS | 55.0% | |
| TCGGGTCTTGGGTCGAGATC+CGG | + | chr3_2:82667435-82667454 | Msa0430790:five_prime_UTR | 60.0% | |
| !! | AACGGTGCCGGCATCGGATT+TGG | + | chr3_2:82667607-82667626 | Msa0430790:CDS | 60.0% |
| ! | GGTGTTGGATGGGGTTTCGG+AGG | + | chr3_2:82667745-82667764 | Msa0430790:CDS | 60.0% |
| AAAGTGACGAGAGCGGGGTG+GGG | - | chr3_2:82668029-82668048 | None:intergenic | 60.0% | |
| GAAAAGTGACGAGAGCGGGG+TGG | - | chr3_2:82668031-82668050 | None:intergenic | 60.0% | |
| TGGGGGGCCTAGGGGAATTA+AGG | - | chr3_2:82668981-82669000 | None:intergenic | 60.0% | |
| TGGTTACAGTGGGGGGCCTA+GGG | - | chr3_2:82668990-82669009 | None:intergenic | 60.0% | |
| ! | TGTGGCGTTGGAGTGGGACT+TGG | + | chr3_2:82669096-82669115 | Msa0430790:CDS | 60.0% |
| ! | GCGTTGGAGTGGGACTTGGT+TGG | + | chr3_2:82669100-82669119 | Msa0430790:CDS | 60.0% |
| CGGGTCTTGGGTCGAGATCC+GGG | + | chr3_2:82667436-82667455 | Msa0430790:five_prime_UTR | 65.0% | |
| GTGGGGGGGAGGAGCTAACT+TGG | - | chr3_2:82667995-82668014 | None:intergenic | 65.0% | |
| GGTTACAGTGGGGGGCCTAG+GGG | - | chr3_2:82668989-82669008 | None:intergenic | 65.0% | |
| GTGGTTACAGTGGGGGGCCT+AGG | - | chr3_2:82668991-82669010 | None:intergenic | 65.0% | |
| GAAGGTGGAGGCTGTGGCGT+TGG | + | chr3_2:82669084-82669103 | Msa0430790:intron | 65.0% | |
| ! | TGGAGGCTGTGGCGTTGGAG+TGG | + | chr3_2:82669089-82669108 | Msa0430790:CDS | 65.0% |
| ! | GGAGGCTGTGGCGTTGGAGT+GGG | + | chr3_2:82669090-82669109 | Msa0430790:CDS | 65.0% |
| CGGCCATGAGCAGGGTTGCA+TGG | + | chr3_2:82669313-82669332 | Msa0430790:intron | 65.0% | |
| GGGCCATGCAACCCTGCTCA+TGG | - | chr3_2:82669319-82669338 | None:intergenic | 65.0% | |
| TGGGGTGCAGGTGGGGGTGG+GGG | - | chr3_2:82668011-82668030 | None:intergenic | 75.0% | |
| GTGGGGTGCAGGTGGGGGTG+GGG | - | chr3_2:82668012-82668031 | None:intergenic | 75.0% | |
| GGTGGGGTGCAGGTGGGGGT+GGG | - | chr3_2:82668013-82668032 | None:intergenic | 75.0% | |
| AGCGGGGTGGGGTGCAGGTG+GGG | - | chr3_2:82668018-82668037 | None:intergenic | 75.0% | |
| GAGCGGGGTGGGGTGCAGGT+GGG | - | chr3_2:82668019-82668038 | None:intergenic | 75.0% | |
| AGAGCGGGGTGGGGTGCAGG+TGG | - | chr3_2:82668020-82668039 | None:intergenic | 75.0% | |
| ACGAGAGCGGGGTGGGGTGC+AGG | - | chr3_2:82668023-82668042 | None:intergenic | 75.0% | |
| ! | TGCAGGTGGGGGTGGGGGGG+AGG | - | chr3_2:82668006-82668025 | None:intergenic | 80.0% |
| ! | GGGTGCAGGTGGGGGTGGGG+GGG | - | chr3_2:82668009-82668028 | None:intergenic | 80.0% |
| ! | GGGGTGCAGGTGGGGGTGGG+GGG | - | chr3_2:82668010-82668029 | None:intergenic | 80.0% |
| ! | GGGTGGGGTGCAGGTGGGGG+TGG | - | chr3_2:82668014-82668033 | None:intergenic | 80.0% |
| ! | GCGGGGTGGGGTGCAGGTGG+GGG | - | chr3_2:82668017-82668036 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 82667416 | 82671057 | 82667416 | ID=Msa0430790;Name=Msa0430790 |
| chr3_2 | mRNA | 82667416 | 82671057 | 82667416 | ID=Msa0430790-mRNA-1;Parent=Msa0430790;Name=Msa0430790-mRNA-1;_AED=0.16;_eAED=0.16;_QI=173|0.6|0.5|1|0.6|0.83|6|0|221 |
| chr3_2 | exon | 82667416 | 82667628 | 82667416 | ID=Msa0430790-mRNA-1:exon:22955;Parent=Msa0430790-mRNA-1 |
| chr3_2 | exon | 82667722 | 82667766 | 82667722 | ID=Msa0430790-mRNA-1:exon:22956;Parent=Msa0430790-mRNA-1 |
| chr3_2 | exon | 82668103 | 82668135 | 82668103 | ID=Msa0430790-mRNA-1:exon:22957;Parent=Msa0430790-mRNA-1 |
| chr3_2 | exon | 82669088 | 82669239 | 82669088 | ID=Msa0430790-mRNA-1:exon:22958;Parent=Msa0430790-mRNA-1 |
| chr3_2 | exon | 82670578 | 82670628 | 82670578 | ID=Msa0430790-mRNA-1:exon:22959;Parent=Msa0430790-mRNA-1 |
| chr3_2 | exon | 82670713 | 82671057 | 82670713 | ID=Msa0430790-mRNA-1:exon:22960;Parent=Msa0430790-mRNA-1 |
| chr3_2 | five_prime_UTR | 82667416 | 82667588 | 82667416 | ID=Msa0430790-mRNA-1:five_prime_utr;Parent=Msa0430790-mRNA-1 |
| chr3_2 | CDS | 82667589 | 82667628 | 82667589 | ID=Msa0430790-mRNA-1:cds;Parent=Msa0430790-mRNA-1 |
| chr3_2 | CDS | 82667722 | 82667766 | 82667722 | ID=Msa0430790-mRNA-1:cds;Parent=Msa0430790-mRNA-1 |
| chr3_2 | CDS | 82668103 | 82668135 | 82668103 | ID=Msa0430790-mRNA-1:cds;Parent=Msa0430790-mRNA-1 |
| chr3_2 | CDS | 82669088 | 82669239 | 82669088 | ID=Msa0430790-mRNA-1:cds;Parent=Msa0430790-mRNA-1 |
| chr3_2 | CDS | 82670578 | 82670628 | 82670578 | ID=Msa0430790-mRNA-1:cds;Parent=Msa0430790-mRNA-1 |
| chr3_2 | CDS | 82670713 | 82671057 | 82670713 | ID=Msa0430790-mRNA-1:cds;Parent=Msa0430790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
