AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0804120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804120 MtrunA17_Chr5g0412131 92.194 474 31 2 1 468 1 474 0.0 884
Msa0804120 MtrunA17_Chr5g0412101 84.421 475 67 2 1 468 1 475 0.0 825
Msa0804120 MtrunA17_Chr5g0412111 81.210 463 82 3 11 468 4 466 0.0 786
Msa0804120 MtrunA17_Chr5g0426431 40.632 475 252 14 8 460 8 474 5.35e-100 308
Msa0804120 MtrunA17_Chr3g0092641 40.042 477 250 16 8 459 8 473 9.90e-99 305
Msa0804120 MtrunA17_Chr3g0118691 36.421 475 274 11 11 463 14 482 1.83e-94 294
Msa0804120 MtrunA17_Chr3g0118661 37.657 478 259 14 11 461 12 477 3.45e-94 293
Msa0804120 MtrunA17_Chr6g0454121 35.818 483 269 12 8 461 6 476 4.34e-92 288
Msa0804120 MtrunA17_Chr6g0454191 36.743 479 270 15 11 463 9 480 6.20e-92 287
Msa0804120 MtrunA17_Chr6g0454291 35.876 485 269 11 9 463 4 476 8.86e-92 286
Msa0804120 MtrunA17_Chr6g0454141 34.990 483 272 11 11 463 9 479 1.32e-91 286
Msa0804120 MtrunA17_Chr6g0454261 34.016 488 270 11 11 463 9 479 3.26e-91 285
Msa0804120 MtrunA17_Chr7g0217881 36.229 472 263 9 11 463 9 461 3.64e-91 285
Msa0804120 MtrunA17_Chr6g0454131 36.157 484 266 12 8 461 6 476 3.72e-91 285
Msa0804120 MtrunA17_Chr2g0278711 36.307 482 282 13 1 463 1 476 1.07e-90 284
Msa0804120 MtrunA17_Chr3g0118771 35.593 472 278 10 11 461 20 486 1.21e-90 284
Msa0804120 MtrunA17_Chr6g0454401 34.244 476 286 10 11 463 9 480 1.51e-90 283
Msa0804120 MtrunA17_Chr4g0050341 36.100 482 268 13 9 460 16 487 3.22e-90 283
Msa0804120 MtrunA17_Chr3g0118671 35.062 482 278 13 12 467 6 478 4.16e-90 282
Msa0804120 MtrunA17_Chr6g0454331 33.958 480 287 11 9 463 4 478 1.44e-89 281
Msa0804120 MtrunA17_Chr3g0118701 35.169 472 278 11 11 460 14 479 2.02e-89 281
Msa0804120 MtrunA17_Chr6g0454181 34.016 488 276 12 8 463 6 479 2.93e-88 278
Msa0804120 MtrunA17_Chr3g0118711 35.010 477 278 12 11 463 12 480 4.70e-88 277
Msa0804120 MtrunA17_Chr6g0453961 33.130 492 288 12 2 463 9 489 6.87e-88 277
Msa0804120 MtrunA17_Chr6g0454301 35.639 477 275 12 11 463 262 730 4.02e-87 281
Msa0804120 MtrunA17_Chr6g0454301 40.889 225 130 3 240 461 3 227 2.21e-50 182
Msa0804120 MtrunA17_Chr6g0453951 34.172 477 284 13 11 463 56 526 5.55e-87 276
Msa0804120 MtrunA17_Chr6g0454361 35.491 479 277 14 7 460 6 477 4.04e-86 272
Msa0804120 MtrunA17_Chr6g0452771 34.864 479 284 11 8 463 6 479 1.09e-85 271
Msa0804120 MtrunA17_Chr3g0078841 34.322 472 284 12 11 461 9 475 1.12e-85 271
Msa0804120 MtrunA17_Chr8g0359821 33.612 479 282 14 11 463 9 477 2.09e-85 270
Msa0804120 MtrunA17_Chr6g0454341 33.402 482 279 12 11 463 9 477 3.81e-84 267
Msa0804120 MtrunA17_Chr6g0454211 35.124 484 270 12 11 463 296 766 1.05e-83 273
Msa0804120 MtrunA17_Chr6g0454211 35.000 260 129 6 132 382 8 236 1.21e-39 152
Msa0804120 MtrunA17_Chr8g0336331 33.546 471 290 10 12 463 10 476 1.16e-83 266
Msa0804120 MtrunA17_Chr5g0423981 34.549 466 268 13 8 463 6 444 1.25e-83 265
Msa0804120 MtrunA17_Chr6g0454201 35.774 478 275 14 11 463 10 480 1.79e-82 263
Msa0804120 MtrunA17_Chr6g0454151 33.745 486 272 11 11 463 9 477 2.40e-82 262
Msa0804120 MtrunA17_Chr6g0454351 33.264 478 270 13 11 463 11 464 1.06e-81 260
Msa0804120 MtrunA17_Chr3g0118751 33.473 478 251 12 11 461 5 442 4.11e-80 255
Msa0804120 MtrunA17_Chr6g0454321 33.983 462 281 11 12 453 10 467 1.49e-79 259
Msa0804120 MtrunA17_Chr3g0112771 33.974 468 267 14 13 465 13 453 7.58e-76 245
Msa0804120 MtrunA17_Chr5g0426401 42.715 302 158 9 173 463 13 310 7.20e-71 227
Msa0804120 MtrunA17_Chr3g0112761 33.974 468 271 13 12 465 8 451 2.00e-70 231
Msa0804120 MtrunA17_Chr6g0454251 34.739 403 220 12 11 383 6 395 5.12e-69 225
Msa0804120 MtrunA17_Chr4g0032331 33.966 474 261 15 13 465 9 451 5.24e-67 221
Msa0804120 MtrunA17_Chr6g0454271 37.102 283 172 4 187 463 4 286 4.13e-65 211
Msa0804120 MtrunA17_Chr8g0380531 33.264 484 279 17 3 466 1 460 5.39e-63 211
Msa0804120 MtrunA17_Chr3g0118721 37.193 285 166 5 190 463 7 289 2.03e-60 199
Msa0804120 MtrunA17_Chr7g0218821 30.544 478 282 13 9 464 2 451 3.17e-60 203
Msa0804120 MtrunA17_Chr5g0414331 32.563 476 270 16 12 467 13 457 9.96e-60 202
Msa0804120 MtrunA17_Chr7g0218811 30.108 465 286 12 9 462 12 448 2.80e-59 201
Msa0804120 MtrunA17_Chr5g0414321 32.563 476 270 17 12 467 11 455 4.08e-59 201
Msa0804120 MtrunA17_Chr7g0218831 30.407 467 279 12 10 462 4 438 6.48e-59 200
Msa0804120 MtrunA17_Chr6g0464871 31.992 472 279 16 6 460 17 463 5.39e-58 198
Msa0804120 MtrunA17_Chr6g0464921 31.983 469 282 15 7 460 6 452 1.52e-57 197
Msa0804120 MtrunA17_Chr7g0250001 30.769 468 276 16 12 460 6 444 4.20e-57 196
Msa0804120 MtrunA17_Chr1g0207861 31.513 476 291 14 12 465 8 470 4.51e-57 196
Msa0804120 MtrunA17_Chr6g0464881 31.799 478 270 18 7 460 6 451 1.25e-56 194
Msa0804120 MtrunA17_Chr7g0218841 30.835 467 278 14 10 462 4 439 1.37e-56 194
Msa0804120 MtrunA17_Chr8g0377921 30.943 488 278 19 10 463 1 463 2.77e-54 188
Msa0804120 MtrunA17_Chr7g0249981 30.720 472 278 16 12 465 25 465 6.76e-54 187
Msa0804120 MtrunA17_Chr1g0161351 29.980 497 290 15 5 464 23 498 8.15e-54 188
Msa0804120 MtrunA17_Chr6g0454221 41.150 226 129 3 240 461 3 228 1.92e-53 181
Msa0804120 MtrunA17_Chr6g0464841 30.977 481 270 16 7 460 6 451 4.15e-53 185
Msa0804120 MtrunA17_Chr8g0366391 30.290 482 301 15 12 467 9 481 4.84e-53 185
Msa0804120 MtrunA17_Chr1g0207981 31.513 476 294 14 12 467 13 476 5.33e-53 185
Msa0804120 MtrunA17_Chr3g0098111 29.622 476 300 13 12 465 9 471 1.41e-52 184
Msa0804120 MtrunA17_Chr8g0365811 30.189 477 296 15 13 465 496 959 3.45e-52 189
Msa0804120 MtrunA17_Chr8g0365811 28.953 449 279 15 12 433 9 444 1.31e-44 167
Msa0804120 MtrunA17_Chr3g0121991 30.689 479 293 11 12 463 79 545 1.19e-51 183
Msa0804120 MtrunA17_Chr5g0401721 29.550 467 286 15 13 452 9 459 1.97e-51 181
Msa0804120 MtrunA17_Chr4g0044511 29.817 493 285 18 12 467 40 508 2.51e-51 181
Msa0804120 MtrunA17_Chr6g0454171 32.938 337 182 8 132 461 8 307 3.21e-51 176
Msa0804120 MtrunA17_Chr8g0355011 30.812 357 192 10 115 460 46 358 5.75e-51 177
Msa0804120 MtrunA17_Chr6g0464861 30.818 477 277 18 6 460 5 450 3.31e-50 177
Msa0804120 MtrunA17_Chr1g0207971 29.436 479 280 17 12 464 8 454 9.00e-50 176
Msa0804120 MtrunA17_Chr7g0249931 28.632 475 286 17 12 465 40 482 1.01e-48 174
Msa0804120 MtrunA17_Chr3g0122001 31.325 498 265 17 12 463 486 952 2.12e-48 178
Msa0804120 MtrunA17_Chr3g0122001 29.752 484 292 13 12 463 6 473 4.40e-47 174
Msa0804120 MtrunA17_Chr5g0429711 30.802 474 288 17 14 467 12 465 4.49e-48 171
Msa0804120 MtrunA17_Chr8g0377941 30.977 481 275 17 13 463 8 461 6.02e-47 169
Msa0804120 MtrunA17_Chr7g0243631 27.968 497 294 19 12 465 13 488 6.51e-47 169
Msa0804120 MtrunA17_Chr8g0347281 29.495 495 274 20 5 460 11 469 2.25e-46 167
Msa0804120 MtrunA17_Chr7g0265151 30.661 499 275 22 12 463 9 483 2.35e-46 167
Msa0804120 MtrunA17_Chr1g0179901 28.776 490 299 14 12 463 16 493 2.68e-46 167
Msa0804120 MtrunA17_Chr1g0207951 29.289 478 283 14 12 464 124 571 3.95e-46 172
Msa0804120 MtrunA17_Chr1g0207951 28.964 473 295 16 12 463 656 1108 7.91e-46 171
Msa0804120 MtrunA17_Chr6g0462531 27.329 483 292 14 13 461 5 462 4.47e-46 166
Msa0804120 MtrunA17_Chr4g0044501 31.148 488 282 20 12 465 10 477 7.42e-46 166
Msa0804120 MtrunA17_Chr7g0243681 27.992 493 294 19 12 465 11 481 1.01e-45 166
Msa0804120 MtrunA17_Chr6g0462571 28.085 470 283 16 13 452 5 449 1.90e-45 165
Msa0804120 MtrunA17_Chr7g0265041 28.457 499 295 16 9 463 8 488 2.17e-45 165
Msa0804120 MtrunA17_Chr7g0218791 27.922 462 292 11 11 456 4 440 4.05e-45 163
Msa0804120 MtrunA17_Chr4g0053321 28.755 466 298 14 13 460 27 476 8.62e-45 163
Msa0804120 MtrunA17_Chr4g0053501 28.485 495 285 18 1 460 1 461 1.53e-44 162
Msa0804120 MtrunA17_Chr8g0347271 29.012 486 272 19 5 452 12 462 3.11e-44 161
Msa0804120 MtrunA17_Chr6g0486251 28.601 479 287 18 13 460 7 461 3.85e-44 161
Msa0804120 MtrunA17_Chr6g0486201 28.601 479 287 18 13 460 7 461 3.85e-44 161
Msa0804120 MtrunA17_Chr5g0419771 29.779 497 294 18 12 468 36 517 6.04e-44 161
Msa0804120 MtrunA17_Chr5g0401851 26.761 497 312 14 4 465 6 485 1.07e-43 160
Msa0804120 MtrunA17_Chr7g0275511 28.862 492 289 18 4 460 7 472 1.11e-43 160
Msa0804120 MtrunA17_Chr5g0431361 27.992 493 289 16 1 465 1 455 2.52e-43 158
Msa0804120 MtrunA17_Chr1g0207831 27.426 474 304 13 13 464 9 464 3.37e-43 159
Msa0804120 MtrunA17_Chr5g0431441 28.266 467 289 16 12 457 18 459 4.13e-43 158
Msa0804120 MtrunA17_Chr7g0275681 28.889 495 287 19 10 463 10 480 4.35e-43 158
Msa0804120 MtrunA17_Chr8g0335141 29.577 497 291 19 1 465 1 470 6.14e-43 157
Msa0804120 MtrunA17_Chr5g0393591 28.266 467 280 12 12 467 17 439 1.19e-42 157
Msa0804120 MtrunA17_Chr6g0459311 27.557 479 292 18 13 460 14 468 1.25e-42 157
Msa0804120 MtrunA17_Chr2g0307961 27.869 488 307 14 1 463 1 468 1.46e-42 157
Msa0804120 MtrunA17_Chr6g0454371 40.588 170 99 2 296 463 1 170 1.58e-42 148
Msa0804120 MtrunA17_Chr7g0243931 27.902 491 302 14 12 465 17 492 3.32e-42 156
Msa0804120 MtrunA17_Chr4g0011051 26.923 494 304 15 12 461 9 489 3.67e-42 156
Msa0804120 MtrunA17_Chr8g0382021 28.247 485 275 19 17 463 39 488 3.92e-42 156
Msa0804120 MtrunA17_Chr4g0060511 27.789 511 301 17 1 465 1 489 6.29e-42 155
Msa0804120 MtrunA17_Chr6g0462551 28.330 473 281 16 13 452 5 452 6.57e-42 155
Msa0804120 MtrunA17_Chr8g0335161 27.941 476 298 17 12 460 6 463 1.47e-41 154
Msa0804120 MtrunA17_Chr5g0442601 27.237 514 292 20 1 463 393 875 2.16e-41 157
Msa0804120 MtrunA17_Chr5g0442601 29.431 299 154 10 115 394 62 322 3.99e-27 115
Msa0804120 MtrunA17_Chr4g0014061 26.694 487 301 15 13 465 10 474 3.47e-41 153
Msa0804120 MtrunA17_Chr5g0448551 26.923 416 283 9 11 420 6 406 5.20e-41 152
Msa0804120 MtrunA17_Chr3g0106231 28.306 484 279 17 5 463 11 451 7.60e-41 152
Msa0804120 MtrunA17_Chr6g0462521 26.160 474 295 13 13 461 5 448 1.07e-40 151
Msa0804120 MtrunA17_Chr1g0159551 27.254 477 281 14 17 463 19 459 1.30e-40 151
Msa0804120 MtrunA17_Chr7g0243951 27.328 494 300 16 12 465 11 485 1.55e-40 152
Msa0804120 MtrunA17_Chr4g0066221 28.067 481 298 16 17 464 16 481 1.62e-40 151
Msa0804120 MtrunA17_Chr6g0462541 28.010 382 229 11 106 464 106 464 1.85e-40 151
Msa0804120 MtrunA17_Chr1g0207931 35.772 246 143 7 219 452 244 486 2.10e-40 151
Msa0804120 MtrunA17_Chr5g0448521 28.400 500 271 20 13 463 6 467 2.75e-40 150
Msa0804120 MtrunA17_Chr6g0463891 28.484 488 300 15 13 465 13 486 3.75e-40 150
Msa0804120 MtrunA17_Chr7g0265141 26.899 487 295 9 12 455 9 477 4.38e-40 150
Msa0804120 MtrunA17_Chr8g0361371 28.337 487 283 22 13 460 8 467 7.82e-40 149
Msa0804120 MtrunA17_Chr5g0440421 31.746 504 274 25 11 463 9 493 9.56e-40 149
Msa0804120 MtrunA17_Chr7g0243771 26.962 497 295 17 12 465 6 477 1.11e-39 149
Msa0804120 MtrunA17_Chr8g0373301 31.152 382 211 17 115 467 112 470 1.33e-39 149
Msa0804120 MtrunA17_Chr7g0243861 26.667 495 303 18 12 465 14 489 1.80e-39 149
Msa0804120 MtrunA17_Chr5g0442541 26.978 493 287 18 12 463 5 465 1.91e-39 148
Msa0804120 MtrunA17_Chr4g0066151 25.806 496 314 15 1 464 7 480 3.39e-39 148
Msa0804120 MtrunA17_Chr5g0431401 28.000 475 287 15 12 465 10 450 4.99e-39 147
Msa0804120 MtrunA17_Chr3g0079731 26.613 496 293 15 13 461 7 478 5.49e-39 147
Msa0804120 MtrunA17_Chr5g0429681 29.895 475 282 20 14 460 45 496 8.25e-39 147
Msa0804120 MtrunA17_Chr4g0066261 27.216 485 298 17 17 464 16 482 9.21e-39 147
Msa0804120 MtrunA17_Chr7g0249961 35.169 236 142 5 240 468 33 264 1.17e-38 141
Msa0804120 MtrunA17_Chr7g0243871 26.358 497 292 17 12 465 9 474 1.40e-38 146
Msa0804120 MtrunA17_Chr7g0243781 25.651 499 296 17 12 465 9 477 1.42e-38 146
Msa0804120 MtrunA17_Chr7g0265111 28.711 512 298 19 1 466 28 518 2.09e-38 146
Msa0804120 MtrunA17_Chr2g0302961 26.122 490 291 14 12 461 5 463 2.66e-38 145
Msa0804120 MtrunA17_Chr5g0419761 27.291 491 306 16 12 462 9 488 2.68e-38 145
Msa0804120 MtrunA17_Chr1g0173121 28.016 489 273 17 13 463 15 462 3.08e-38 145
Msa0804120 MtrunA17_Chr8g0334851 31.026 390 222 12 106 467 103 473 3.08e-38 145
Msa0804120 MtrunA17_Chr7g0265101 27.400 500 293 20 12 463 9 486 3.48e-38 145
Msa0804120 MtrunA17_Chr7g0243801 26.423 492 304 16 12 465 7 478 9.80e-38 144
Msa0804120 MtrunA17_Chr6g0463851 27.723 505 271 19 17 464 16 483 1.00e-37 144
Msa0804120 MtrunA17_Chr8g0334831 28.770 431 247 18 13 408 7 412 1.53e-37 143
Msa0804120 MtrunA17_Chr8g0369341 27.459 488 294 16 12 464 7 469 1.81e-37 143
Msa0804120 MtrunA17_Chr7g0265051 26.899 487 310 17 12 463 9 484 3.22e-37 142
Msa0804120 MtrunA17_Chr8g0339461 29.759 373 219 14 115 459 110 467 4.20e-37 142
Msa0804120 MtrunA17_Chr6g0463861 26.793 474 300 16 17 461 16 471 4.39e-37 142
Msa0804120 MtrunA17_Chr2g0294921 27.066 484 300 15 17 464 165 631 4.86e-37 144
Msa0804120 MtrunA17_Chr5g0442581 30.233 387 211 15 115 463 111 476 5.02e-37 142
Msa0804120 MtrunA17_Chr4g0042891 33.916 286 144 12 198 461 201 463 5.29e-37 141
Msa0804120 MtrunA17_Chr4g0066201 26.793 474 300 12 17 464 23 475 5.90e-37 141
Msa0804120 MtrunA17_Chr7g0235051 26.050 476 291 14 12 461 11 451 6.01e-37 141
Msa0804120 MtrunA17_Chr5g0420801 27.731 476 298 15 12 464 7 459 7.40e-37 141
Msa0804120 MtrunA17_Chr5g0442491 27.345 501 282 20 13 463 6 474 8.09e-37 141
Msa0804120 MtrunA17_Chr6g0454231 32.400 250 129 5 215 461 4 216 9.44e-37 140
Msa0804120 MtrunA17_Chr6g0454231 28.936 235 143 9 11 227 249 477 3.04e-15 77.8
Msa0804120 MtrunA17_Chr8g0336651 27.813 471 291 16 12 452 781 1232 1.06e-36 144
Msa0804120 MtrunA17_Chr8g0336651 27.391 460 290 15 12 446 6 446 4.08e-33 133
Msa0804120 MtrunA17_Chr8g0336651 34.361 227 116 7 240 460 572 771 3.46e-30 124
Msa0804120 MtrunA17_Chr4g0066281 27.310 487 279 17 17 464 17 467 1.09e-36 140
Msa0804120 MtrunA17_Chr2g0294931 27.383 493 299 15 13 466 12 484 1.70e-36 140
Msa0804120 MtrunA17_Chr4g0072771 25.957 470 305 17 12 465 25 467 2.04e-36 140
Msa0804120 MtrunA17_Chr4g0044521 29.836 305 187 9 180 461 164 464 2.69e-36 139
Msa0804120 MtrunA17_Chr8g0339601 30.662 287 164 9 193 453 42 319 3.12e-36 136
Msa0804120 MtrunA17_Chr5g0431421 28.092 477 284 14 12 465 10 450 3.19e-36 139
Msa0804120 MtrunA17_Chr4g0042931 27.721 487 281 19 12 460 7 460 5.45e-36 139
Msa0804120 MtrunA17_Chr2g0302991 30.263 304 183 7 180 461 164 460 1.07e-35 137
Msa0804120 MtrunA17_Chr8g0336261 43.382 136 76 1 296 430 1 136 1.15e-35 129
Msa0804120 MtrunA17_Chr4g0044481 28.818 406 242 11 12 405 27 397 1.39e-35 137
Msa0804120 MtrunA17_Chr7g0243761 27.311 476 294 17 12 465 11 456 2.28e-35 137
Msa0804120 MtrunA17_Chr8g0336691 27.708 480 294 22 12 460 13 470 2.41e-35 140
Msa0804120 MtrunA17_Chr8g0336691 33.209 268 147 8 216 460 1118 1376 4.25e-34 136
Msa0804120 MtrunA17_Chr8g0336691 26.974 456 284 18 12 452 480 901 1.41e-30 125
Msa0804120 MtrunA17_Chr6g0453941 31.562 320 147 9 10 324 9 261 2.60e-35 132
Msa0804120 MtrunA17_Chr2g0329111 27.419 434 246 16 13 407 7 410 3.04e-35 137
Msa0804120 MtrunA17_Chr5g0431371 27.443 481 282 16 12 465 10 450 3.27e-35 136
Msa0804120 MtrunA17_Chr5g0428081 28.484 488 286 16 17 464 16 480 3.50e-35 137
Msa0804120 MtrunA17_Chr6g0449931 25.941 478 265 20 12 440 6 443 4.89e-35 136
Msa0804120 MtrunA17_Chr7g0232401 27.794 349 203 8 124 440 120 451 5.41e-35 136
Msa0804120 MtrunA17_Chr8g0339631 28.022 364 220 13 115 452 110 457 5.63e-35 136
Msa0804120 MtrunA17_Chr5g0442561 26.653 499 288 20 12 463 5 472 6.38e-35 135
Msa0804120 MtrunA17_Chr7g0232411 27.044 477 300 16 12 460 6 462 7.87e-35 135
Msa0804120 MtrunA17_Chr1g0153451 30.623 369 212 15 117 460 111 460 1.30e-34 135
Msa0804120 MtrunA17_Chr4g0066131 25.253 495 294 15 13 464 14 475 1.51e-34 135
Msa0804120 MtrunA17_Chr5g0416741 25.720 486 314 16 13 465 14 485 1.68e-34 135
Msa0804120 MtrunA17_Chr7g0232391 26.141 482 298 16 12 460 6 462 1.79e-34 134
Msa0804120 MtrunA17_Chr8g0374941 26.501 483 302 18 12 460 951 1414 2.58e-34 137
Msa0804120 MtrunA17_Chr8g0374941 25.941 478 281 18 12 445 478 926 3.09e-28 119
Msa0804120 MtrunA17_Chr8g0374941 25.586 469 296 19 12 446 13 462 7.82e-27 114
Msa0804120 MtrunA17_Chr4g0066171 25.979 485 289 15 17 464 26 477 2.71e-34 134
Msa0804120 MtrunA17_Chr7g0232331 27.438 441 271 15 12 424 6 425 5.09e-34 133
Msa0804120 MtrunA17_Chr8g0339451 28.689 366 218 14 115 452 102 452 7.44e-34 132
Msa0804120 MtrunA17_Chr8g0336741 29.234 431 260 19 12 419 13 421 1.01e-33 132
Msa0804120 MtrunA17_Chr8g0374901 30.565 301 166 9 195 464 191 479 1.26e-33 132
Msa0804120 MtrunA17_Chr5g0410941 26.166 493 297 16 13 464 24 490 1.71e-33 132
Msa0804120 MtrunA17_Chr8g0374931 26.598 485 301 16 17 464 16 482 1.73e-33 132
Msa0804120 MtrunA17_Chr4g0072761 26.923 364 234 12 111 465 114 454 2.01e-33 131
Msa0804120 MtrunA17_Chr5g0442511 26.804 485 284 17 12 464 49 494 3.03e-33 131
Msa0804120 MtrunA17_Chr7g0218311 30.201 298 179 8 194 464 189 484 3.18e-33 131
Msa0804120 MtrunA17_Chr7g0232341 27.079 469 283 17 12 445 6 450 3.42e-33 130
Msa0804120 MtrunA17_Chr5g0442521 27.692 390 217 16 115 463 110 475 3.76e-33 130
Msa0804120 MtrunA17_Chr8g0339441 37.129 202 105 6 273 452 217 418 3.90e-33 130
Msa0804120 MtrunA17_Chr2g0294941 30.721 319 188 12 117 417 17 320 8.15e-33 128
Msa0804120 MtrunA17_Chr8g0336731 31.210 314 174 11 128 419 147 440 8.35e-33 130
Msa0804120 MtrunA17_Chr5g0432731 31.418 261 149 7 215 460 48 293 2.17e-32 125
Msa0804120 MtrunA17_Chr8g0355221 23.904 502 324 20 3 465 6 488 2.66e-32 129
Msa0804120 MtrunA17_Chr6g0453981 36.946 203 116 5 132 324 8 208 9.37e-32 121
Msa0804120 MtrunA17_Chr8g0374971 29.236 301 172 9 194 464 192 481 1.54e-31 126
Msa0804120 MtrunA17_Chr8g0334861 31.618 272 144 9 217 460 203 460 1.62e-31 126
Msa0804120 MtrunA17_Chr5g0403641 25.455 495 261 21 12 456 59 495 1.97e-31 126
Msa0804120 MtrunA17_Chr8g0370941 24.902 510 296 18 12 463 8 488 3.20e-31 125
Msa0804120 MtrunA17_Chr7g0243711 35.885 209 115 5 276 465 110 318 4.12e-31 122
Msa0804120 MtrunA17_Chr1g0165701 31.837 245 145 7 241 465 243 485 1.27e-30 124
Msa0804120 MtrunA17_Chr7g0243851 31.852 270 158 8 220 465 177 444 3.09e-30 122
Msa0804120 MtrunA17_Chr7g0241781 27.729 458 263 18 1 441 1 407 6.07e-30 121
Msa0804120 MtrunA17_Chr7g0232311 28.652 356 211 13 130 460 123 460 7.97e-30 121
Msa0804120 MtrunA17_Chr5g0431431 32.787 244 140 8 163 400 99 324 3.33e-29 117
Msa0804120 MtrunA17_Chr1g0153461 34.300 207 117 5 273 460 3 209 6.86e-29 113
Msa0804120 MtrunA17_Chr3g0106251 30.556 288 175 6 191 467 24 297 7.89e-29 115
Msa0804120 MtrunA17_Chr8g0350881 25.866 491 307 19 13 466 13 483 1.23e-28 118
Msa0804120 MtrunA17_Chr7g0243611 31.095 283 169 10 130 405 8 271 1.69e-28 114
Msa0804120 MtrunA17_Chr6g0482061 25.261 479 297 16 12 451 11 467 3.69e-28 116
Msa0804120 MtrunA17_Chr7g0241801 27.815 453 269 17 1 441 1 407 2.26e-27 114
Msa0804120 MtrunA17_Chr7g0243911 35.567 194 112 5 276 458 24 215 3.88e-27 108
Msa0804120 MtrunA17_Chr5g0416821 25.000 476 319 17 13 465 15 475 4.92e-27 113
Msa0804120 MtrunA17_Chr7g0243811 34.043 188 112 5 215 397 187 367 1.54e-25 107
Msa0804120 MtrunA17_Chr8g0367221 27.014 422 256 15 3 399 4 398 1.50e-24 107
Msa0804120 MtrunA17_Chr8g0367221 39.062 128 74 2 276 399 1548 1675 2.27e-20 94.7
Msa0804120 MtrunA17_Chr8g0367221 40.625 128 72 2 276 399 1058 1185 4.09e-20 94.0
Msa0804120 MtrunA17_Chr1g0196851 25.366 410 268 16 12 407 49 434 2.58e-24 105
Msa0804120 MtrunA17_Chr8g0357361 42.029 138 78 2 273 409 117 253 3.40e-24 101
Msa0804120 MtrunA17_Chr5g0409591 28.309 272 166 8 218 461 212 482 4.43e-24 104
Msa0804120 MtrunA17_Chr5g0426411 37.572 173 94 6 6 169 6 173 1.03e-23 97.8
Msa0804120 MtrunA17_Chr1g0207881 35.294 153 92 1 319 464 233 385 1.21e-22 99.8
Msa0804120 MtrunA17_Chr4g0066141 36.709 158 83 4 325 465 196 353 5.51e-22 97.1
Msa0804120 MtrunA17_Chr7g0232351 34.615 182 94 6 217 382 206 378 1.10e-21 96.7
Msa0804120 MtrunA17_Chr4g0069611 26.098 410 249 16 12 399 15 392 1.19e-21 97.4
Msa0804120 MtrunA17_Chr4g0040691 24.834 451 293 14 12 441 8 433 1.42e-21 97.1
Msa0804120 MtrunA17_Chr8g0361411 30.882 204 124 6 218 408 202 401 1.85e-21 96.7
Msa0804120 MtrunA17_Chr8g0337381 39.062 128 71 3 343 465 2 127 4.58e-21 89.0
Msa0804120 MtrunA17_Chr8g0336321 37.324 142 84 4 271 408 265 405 5.65e-21 95.5
Msa0804120 MtrunA17_Chr3g0079711 32.609 184 102 6 300 461 3 186 6.34e-21 90.5
Msa0804120 MtrunA17_Chr7g0231631 30.315 254 166 7 220 465 11 261 8.58e-21 92.0
Msa0804120 MtrunA17_Chr4g0040711 24.714 437 286 14 12 430 8 419 9.02e-21 94.7
Msa0804120 MtrunA17_Chr5g0427571 33.125 160 96 4 252 408 88 239 1.24e-20 92.0
Msa0804120 MtrunA17_Chr6g0454111 36.170 141 85 3 180 316 44 183 1.94e-20 89.0
Msa0804120 MtrunA17_Chr8g0336251 35.211 142 87 4 271 408 265 405 2.78e-20 93.2
Msa0804120 MtrunA17_Chr6g0464091 26.044 407 260 15 12 399 18 402 5.85e-20 92.4
Msa0804120 MtrunA17_Chr2g0302851 24.372 398 271 12 12 399 16 393 1.75e-19 90.9
Msa0804120 MtrunA17_Chr3g0092031 36.508 126 78 2 275 399 5 129 9.53e-19 84.3
Msa0804120 MtrunA17_Chr6g0466831 24.938 405 267 13 8 399 15 395 1.14e-18 88.2
Msa0804120 MtrunA17_Chr2g0278721 25.000 460 303 20 7 440 511 954 1.22e-18 89.4
Msa0804120 MtrunA17_Chr2g0278721 24.096 415 256 15 12 399 15 397 1.70e-17 85.9
Msa0804120 MtrunA17_Chr4g0029151 24.000 450 272 18 12 430 20 430 1.24e-18 88.2
Msa0804120 MtrunA17_Chr2g0278741 24.627 402 270 14 12 399 97 479 2.68e-18 87.4
Msa0804120 MtrunA17_Chr7g0250021 25.948 343 212 13 12 339 12 327 6.14e-18 84.7
Msa0804120 MtrunA17_Chr8g0334841 33.962 159 89 6 180 333 1 148 3.97e-17 79.0
Msa0804120 MtrunA17_Chr8g0336271 26.337 243 160 7 12 239 10 248 4.39e-17 81.6
Msa0804120 MtrunA17_Chr2g0283041 23.864 440 286 14 12 429 7 419 6.30e-17 82.8
Msa0804120 MtrunA17_Chr6g0466841 23.414 457 302 17 8 443 15 444 6.47e-17 82.8
Msa0804120 MtrunA17_Chr4g0029131 23.831 449 274 17 12 430 12 422 5.03e-16 80.9
Msa0804120 MtrunA17_Chr6g0454281 28.638 213 114 9 11 196 9 210 1.83e-15 75.5
Msa0804120 MtrunA17_Chr4g0039881 24.304 395 255 15 22 399 2 369 3.45e-15 77.4
Msa0804120 MtrunA17_Chr3g0118741 60.000 50 19 1 11 59 5 54 1.67e-13 65.5
Msa0804120 MtrunA17_Chr6g0454391 32.381 105 70 1 359 463 13 116 2.04e-13 67.0
Msa0804120 MtrunA17_Chr5g0427561 35.227 88 48 3 381 463 1 84 1.25e-12 63.5
Msa0804120 MtrunA17_Chr7g0243731 41.429 70 41 0 338 407 4 73 3.04e-11 59.3
Msa0804120 MtrunA17_Chr5g0442501 24.695 328 197 13 13 320 6 303 3.42e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0804120 AT1G22380.1 37.185 476 269 12 11 463 12 480 1.08e-97 303
Msa0804120 AT1G22370.2 38.217 471 266 11 11 463 12 475 5.24e-94 293
Msa0804120 AT1G22400.1 35.032 471 281 11 11 460 12 478 8.98e-92 287
Msa0804120 AT1G22360.1 36.897 477 267 13 12 463 10 477 7.12e-91 285
Msa0804120 AT1G22360.2 36.688 477 256 14 12 463 10 465 9.12e-88 276
Msa0804120 AT1G22340.1 35.062 482 272 13 11 463 12 481 7.40e-87 275
Msa0804120 AT1G78270.1 35.232 474 281 12 11 463 12 480 1.55e-86 274
Msa0804120 AT3G11340.1 34.047 467 276 12 7 465 4 446 1.81e-78 251
Msa0804120 AT5G05900.1 35.084 476 249 16 12 463 8 447 1.86e-74 241
Msa0804120 AT3G55710.1 32.353 476 285 14 6 465 2 456 6.35e-71 232
Msa0804120 AT5G05880.1 33.544 474 264 13 12 465 8 450 1.46e-69 228
Msa0804120 AT3G46660.1 34.091 484 268 14 1 465 6 457 4.48e-69 227
Msa0804120 AT5G05860.1 35.232 474 262 13 6 463 3 447 6.62e-69 227
Msa0804120 AT3G55700.1 32.203 472 275 14 12 465 8 452 1.13e-68 226
Msa0804120 AT3G46670.1 33.691 466 273 14 12 465 9 450 2.82e-67 223
Msa0804120 AT5G59590.1 32.489 474 276 15 3 460 1 446 1.64e-66 220
Msa0804120 AT5G05890.1 32.558 473 274 13 12 465 8 454 1.05e-65 218
Msa0804120 AT3G46680.1 32.484 471 263 16 12 460 9 446 2.04e-64 215
Msa0804120 AT5G38010.1 32.495 477 282 14 3 463 1 453 3.36e-64 214
Msa0804120 AT5G59580.1 31.838 468 276 15 12 464 9 448 2.83e-62 209
Msa0804120 AT3G46700.1 31.545 466 279 13 12 465 9 446 5.08e-61 206
Msa0804120 AT1G22370.1 39.000 300 173 6 173 463 7 305 6.68e-61 201
Msa0804120 AT4G15480.1 30.042 476 293 12 12 463 19 478 6.86e-61 207
Msa0804120 AT5G05870.1 31.198 484 276 14 6 463 2 454 9.85e-61 206
Msa0804120 AT3G46690.1 31.847 471 276 14 12 465 9 451 1.38e-60 205
Msa0804120 AT3G46650.1 30.818 477 269 14 3 463 1 432 2.25e-60 204
Msa0804120 AT3G46720.1 30.769 468 274 14 13 465 10 442 7.32e-60 203
Msa0804120 AT5G38040.1 32.391 460 267 16 20 463 18 449 9.46e-60 202
Msa0804120 AT3G02100.1 31.458 480 284 13 6 465 7 461 5.63e-59 201
Msa0804120 AT3G21560.1 31.837 490 285 18 1 461 1 470 2.45e-58 200
Msa0804120 AT4G15490.1 31.092 476 283 15 12 461 8 464 1.06e-56 195
Msa0804120 AT2G26480.1 30.022 463 288 12 12 463 8 445 2.14e-56 194
Msa0804120 AT2G43820.1 30.802 474 276 16 12 465 7 448 1.38e-55 191
Msa0804120 AT2G36970.1 28.947 494 298 14 3 465 1 472 3.56e-55 191
Msa0804120 AT2G43840.2 30.361 471 280 15 12 464 7 447 4.83e-55 190
Msa0804120 AT2G28080.1 30.000 450 284 14 17 447 23 460 9.35e-55 190
Msa0804120 AT2G43840.1 30.591 474 275 17 12 464 7 447 1.70e-54 189
Msa0804120 AT4G15500.1 30.417 480 286 12 7 461 4 460 8.80e-54 187
Msa0804120 AT5G17050.1 30.704 469 284 17 12 463 12 456 3.63e-52 182
Msa0804120 AT2G31750.1 30.672 476 287 18 7 463 3 454 2.44e-51 180
Msa0804120 AT2G31750.2 30.672 476 287 18 7 463 3 454 8.73e-51 180
Msa0804120 AT1G05675.1 31.064 470 277 14 12 460 6 449 1.18e-50 179
Msa0804120 AT2G31790.1 29.474 475 280 18 12 460 8 453 8.75e-50 176
Msa0804120 AT4G15550.1 27.912 498 274 18 11 461 12 471 9.61e-50 176
Msa0804120 AT1G30530.1 30.737 475 284 18 4 463 6 450 1.18e-49 176
Msa0804120 AT5G26310.1 31.148 488 261 22 11 456 6 460 2.06e-49 176
Msa0804120 AT5G17030.1 30.063 479 287 17 4 463 6 455 5.27e-49 174
Msa0804120 AT5G17040.1 28.753 473 278 19 12 463 5 439 6.64e-49 174
Msa0804120 AT2G23260.1 30.983 468 269 20 12 456 10 446 2.92e-48 172
Msa0804120 AT2G23250.1 31.818 462 269 17 21 466 7 438 4.92e-48 171
Msa0804120 AT4G34138.1 28.862 492 296 16 5 461 4 476 2.98e-47 170
Msa0804120 AT2G15490.3 30.894 492 275 22 12 461 7 475 6.32e-47 169
Msa0804120 AT1G05680.1 29.498 478 274 14 12 460 6 449 8.19e-47 168
Msa0804120 AT2G15480.1 29.979 487 286 18 12 461 10 478 8.63e-47 169
Msa0804120 AT2G15490.1 30.707 495 275 22 12 461 7 478 1.06e-46 169
Msa0804120 AT5G66690.1 30.021 483 273 18 11 456 6 460 1.51e-46 168
Msa0804120 AT5G17040.2 32.781 302 182 10 170 463 49 337 2.16e-46 164
Msa0804120 AT2G29710.1 28.125 480 298 14 14 466 6 465 5.87e-46 166
Msa0804120 AT2G15480.2 29.376 497 286 18 12 461 10 488 6.54e-46 167
Msa0804120 AT1G05560.2 28.659 492 278 18 6 463 49 501 6.70e-46 167
Msa0804120 AT1G05560.1 28.542 487 275 18 11 463 4 451 1.47e-45 165
Msa0804120 AT2G36760.1 28.994 507 309 17 1 467 1 496 1.68e-45 166
Msa0804120 AT3G16520.3 27.754 472 298 16 13 461 6 457 2.80e-45 164
Msa0804120 AT1G05530.1 28.367 490 275 19 11 463 4 454 6.98e-45 163
Msa0804120 AT3G16520.2 28.675 415 261 13 13 409 6 403 8.77e-45 162
Msa0804120 AT3G16520.1 28.675 415 261 13 13 409 6 403 1.08e-44 162
Msa0804120 AT1G01420.2 29.787 470 268 18 11 446 10 451 1.53e-44 162
Msa0804120 AT2G29730.1 26.971 482 305 17 14 468 6 467 1.54e-44 162
Msa0804120 AT1G01420.1 29.787 470 268 18 11 446 7 448 1.70e-44 162
Msa0804120 AT1G24100.1 29.735 491 281 19 2 463 3 458 7.15e-44 160
Msa0804120 AT2G36780.1 28.571 504 279 18 12 463 14 488 2.14e-43 160
Msa0804120 AT4G34131.1 28.008 507 297 18 1 465 1 481 3.87e-43 159
Msa0804120 AT4G01070.1 28.846 468 270 16 11 443 7 446 3.89e-43 159
Msa0804120 AT3G50740.1 29.741 501 275 20 7 461 2 471 1.04e-42 158
Msa0804120 AT2G36750.1 29.577 497 282 19 12 463 10 483 1.14e-42 158
Msa0804120 AT2G30140.1 28.481 474 290 18 12 467 13 455 3.94e-42 155
Msa0804120 AT2G30140.2 28.481 474 289 18 12 467 13 454 4.51e-42 155
Msa0804120 AT2G36770.1 28.240 517 272 21 12 465 14 494 6.44e-42 155
Msa0804120 AT4G34135.1 28.163 490 299 15 12 465 11 483 1.17e-41 155
Msa0804120 AT1G01390.1 29.639 415 255 12 11 405 7 404 5.50e-41 153
Msa0804120 AT1G01390.2 29.639 415 255 12 11 405 24 421 9.03e-41 152
Msa0804120 AT3G22250.1 25.799 438 289 12 11 428 7 428 1.61e-40 151
Msa0804120 AT4G14090.1 28.721 477 279 16 11 461 12 453 2.33e-40 150
Msa0804120 AT3G21790.1 27.823 496 293 18 12 463 4 478 4.45e-40 150
Msa0804120 AT2G36800.1 27.129 505 296 17 7 461 7 489 6.71e-40 150
Msa0804120 AT3G21760.1 27.739 429 262 13 12 409 4 415 4.31e-38 145
Msa0804120 AT3G53160.1 27.148 512 284 18 12 467 8 486 8.24e-38 144
Msa0804120 AT2G36790.1 27.767 497 304 20 12 467 13 495 3.52e-37 142
Msa0804120 AT1G73880.1 27.310 487 301 17 6 465 8 468 3.96e-37 142
Msa0804120 AT2G29750.1 26.415 477 305 13 7 453 3 463 1.51e-36 140
Msa0804120 AT1G07250.1 26.971 482 282 18 14 452 7 461 4.15e-36 139
Msa0804120 AT5G03490.1 26.971 482 282 15 11 461 18 460 3.37e-35 137
Msa0804120 AT5G14860.1 29.920 498 269 25 12 461 8 473 7.97e-35 136
Msa0804120 AT2G30150.2 25.786 477 310 15 3 463 4 452 8.49e-35 135
Msa0804120 AT3G21780.1 26.777 422 261 13 12 408 4 402 8.99e-35 135
Msa0804120 AT3G21800.1 26.775 493 301 18 13 463 5 479 2.72e-34 134
Msa0804120 AT2G29740.1 26.087 483 300 16 7 453 3 464 4.54e-34 134
Msa0804120 AT5G37950.2 33.333 276 159 9 113 382 81 337 1.02e-33 130
Msa0804120 AT4G36770.1 26.371 474 281 18 12 447 4 447 3.66e-33 130
Msa0804120 AT1G51210.1 27.447 470 264 17 4 439 7 433 4.92e-33 130
Msa0804120 AT4G15260.1 27.493 371 222 12 123 463 1 354 5.06e-33 129
Msa0804120 AT5G37950.1 33.213 277 164 10 113 382 81 343 8.43e-33 127
Msa0804120 AT2G18570.1 25.749 501 272 20 11 456 4 459 1.08e-32 130
Msa0804120 AT4G15280.2 25.646 503 305 18 3 461 26 503 1.56e-32 130
Msa0804120 AT4G15280.1 25.455 495 301 17 12 463 4 473 2.24e-32 129
Msa0804120 AT1G07260.1 33.333 225 132 5 240 453 244 461 2.59e-32 129
Msa0804120 AT3G53150.1 27.481 524 289 22 3 463 14 509 3.05e-32 129
Msa0804120 AT1G07240.1 30.375 293 175 9 179 452 182 464 3.11e-32 129
Msa0804120 AT2G30150.1 25.702 463 300 15 17 463 2 436 4.14e-32 127
Msa0804120 AT3G21750.1 26.237 465 285 13 12 446 4 440 4.68e-31 125
Msa0804120 AT2G18560.1 31.461 267 143 11 217 456 116 369 3.23e-28 115
Msa0804120 AT5G12890.1 26.369 493 297 19 12 461 10 479 9.29e-27 113
Msa0804120 AT1G10400.1 32.103 271 155 11 202 460 206 459 2.47e-26 111
Msa0804120 AT5G49690.1 26.829 451 291 19 6 440 4 431 2.64e-26 111
Msa0804120 AT2G16890.2 24.628 471 310 17 12 456 9 460 4.92e-26 110
Msa0804120 AT2G16890.3 25.362 414 273 14 12 408 9 403 1.00e-24 106
Msa0804120 AT1G06000.1 28.625 269 169 7 209 460 168 430 2.67e-24 105
Msa0804120 AT5G65550.1 26.014 419 274 13 4 407 3 400 1.75e-23 103
Msa0804120 AT5G54010.1 25.728 412 259 14 12 408 6 385 4.51e-22 99.0
Msa0804120 AT4G01070.2 26.911 327 194 11 11 320 7 305 1.05e-19 90.5
Msa0804120 AT2G22590.1 25.118 422 247 13 12 399 15 401 4.39e-19 90.1
Msa0804120 AT4G27560.1 24.694 409 248 16 12 399 7 376 1.08e-17 85.9
Msa0804120 AT4G27570.1 24.450 409 249 16 12 399 7 376 1.76e-17 85.1
Msa0804120 AT4G34135.2 24.625 333 210 12 12 320 11 326 1.80e-15 77.8
Msa0804120 AT5G53990.1 23.465 456 294 16 12 449 6 424 2.12e-15 78.6
Msa0804120 AT1G64910.1 24.265 408 264 15 12 408 6 379 2.70e-15 78.2
Msa0804120 AT4G09500.2 24.726 457 287 20 12 449 6 424 1.30e-14 76.3
Msa0804120 AT3G29630.1 24.319 477 293 18 12 461 6 441 3.34e-14 75.1
Msa0804120 AT5G54060.1 23.591 479 316 16 13 465 14 468 6.44e-13 70.9
Msa0804120 AT4G09500.1 24.009 454 269 17 12 449 6 399 3.02e-12 68.6

Find 124 sgRNAs with CRISPR-Local

Find 239 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTATTAGTGCTTGTTGCTTC+TGG 0.129870 5_3:+19694931 Msa0804120:CDS
GAAAATAAGTTGCATTATTT+TGG 0.129986 5_3:+19694839 Msa0804120:CDS
ATGGCAAAATTCACATCTTA+TGG 0.140958 5_3:-19697287 None:intergenic
CTTAATTTCAGATGATAATT+TGG 0.148721 5_3:+19697511 Msa0804120:three_prime_UTR
GTGAGTGAGGTTTGGGGAAT+TGG 0.163141 5_3:+19697074 Msa0804120:CDS
TCTTCCAAGTTTCTGTAAAA+TGG 0.190412 5_3:+19696458 Msa0804120:CDS
CTGACCCAACAATCACTTAA+AGG 0.194273 5_3:+19696510 Msa0804120:CDS
TGGGGACTTGAAGACGAATT+TGG 0.196816 5_3:-19696584 None:intergenic
ATGATTTCTTCTCTCTTCAT+TGG 0.227915 5_3:-19696768 None:intergenic
TTTATCTGTTCCAAAGCTTT+TGG 0.240602 5_3:+19694959 Msa0804120:CDS
TCAGAGTTATATACCTCTAA+TGG 0.246805 5_3:-19694997 None:intergenic
TACATCCCCACAACATTATA+TGG 0.257242 5_3:+19694426 Msa0804120:five_prime_UTR
ACTGATTTGGCTGCTGAGTT+TGG 0.266869 5_3:+19694885 Msa0804120:CDS
ATTTGTTGATCAGCAAAATA+AGG 0.280250 5_3:-19697038 None:intergenic
TGATTTCTTCTCTCTTCATT+GGG 0.288337 5_3:-19696767 None:intergenic
AAATACAACCTTGTCTAATA+TGG 0.296217 5_3:-19696487 None:intergenic
AAGATTTGGTTGAGTATATA+AGG 0.297268 5_3:+19697255 Msa0804120:CDS
CTACAACAACTTCCAAGATT+TGG 0.297458 5_3:+19697241 Msa0804120:CDS
CCAAACATGGTTCAAGAAAA+AGG 0.304790 5_3:+19696846 Msa0804120:CDS
TATTAGTGCTTGTTGCTTCT+GGG 0.305741 5_3:+19694932 Msa0804120:CDS
TGAGTGAGGTTTGGGGAATT+GGG 0.318346 5_3:+19697075 Msa0804120:CDS
TGTAAAATCAGCCATGGATA+TGG 0.329000 5_3:+19697178 Msa0804120:CDS
GGGCCAATGGTGTAGAGTTT+GGG 0.329587 5_3:-19696603 None:intergenic
AGGGCCAATGGTGTAGAGTT+TGG 0.331795 5_3:-19696604 None:intergenic
CTGATTTGGCTGCTGAGTTT+GGG 0.334780 5_3:+19694886 Msa0804120:CDS
TAGGTTTGTGAGTGAGGTTT+GGG 0.336411 5_3:+19697067 Msa0804120:CDS
GAGAAGAAATCATTGAGATT+TGG 0.337296 5_3:+19696778 Msa0804120:CDS
GAGGAGAAACATCCTGGATT+TGG 0.341896 5_3:+19694741 Msa0804120:CDS
ATCATCTGAAATTAAGTTAA+GGG 0.347177 5_3:-19697504 None:intergenic
GGGGACTTGAAGACGAATTT+GGG 0.347598 5_3:-19696583 None:intergenic
CTGATCAACAAATTAATAGT+AGG 0.360356 5_3:+19697048 Msa0804120:CDS
TGGATGCAATATCATGTTAT+AGG 0.364048 5_3:+19694446 Msa0804120:five_prime_UTR
GTAGCCTTGTAAAATTGTTT+AGG 0.366018 5_3:+19697462 Msa0804120:three_prime_UTR
TGGTGACCTTGCTACTGATT+TGG 0.367535 5_3:+19694872 Msa0804120:CDS
CTGTGTTGAGGAAAGTTATA+TGG 0.368749 5_3:-19694617 None:intergenic
GTGTGACAAAACTTCCTCTT+GGG 0.379240 5_3:-19696931 None:intergenic
TCATTGCACTCCAAAAGCTT+TGG 0.388796 5_3:-19694969 None:intergenic
CACAGTGAGGAGAAACATCC+TGG 0.393643 5_3:+19694735 Msa0804120:CDS
CAGAGTTATATACCTCTAAT+GGG 0.395783 5_3:-19694996 None:intergenic
TATCATCTGAAATTAAGTTA+AGG 0.398365 5_3:-19697505 None:intergenic
CAAATCTTGGAAGTTGTTGT+AGG 0.402443 5_3:-19697240 None:intergenic
TAGGAATGTTGTTGAGAATA+TGG 0.403651 5_3:+19697121 Msa0804120:CDS
GGGAATTGGGTTGGATATGA+AGG 0.408538 5_3:+19697088 Msa0804120:CDS
CACTTCGAAGAAATTGCTCT+TGG 0.410544 5_3:-19696670 None:intergenic
TGGCAAAATTCACATCTTAT+GGG 0.411284 5_3:-19697286 None:intergenic
ATAGTCTTGAATTGAAGCTT+AGG 0.412111 5_3:-19694702 None:intergenic
TTATATACTCAACCAAATCT+TGG 0.416061 5_3:-19697253 None:intergenic
GTAGGTTTGTGAGTGAGGTT+TGG 0.422153 5_3:+19697066 Msa0804120:CDS
TGCAATGAACTTCCCATTAG+AGG 0.423671 5_3:+19694984 Msa0804120:CDS
TGAGGTTTGGGGAATTGGGT+TGG 0.428882 5_3:+19697079 Msa0804120:CDS
CGTTGCCTTTAAGTGATTGT+TGG 0.430560 5_3:-19696515 None:intergenic
TGTGTGACAAAACTTCCTCT+TGG 0.436898 5_3:-19696932 None:intergenic
ACCACCAGGACTCACACTCT+TGG 0.441655 5_3:-19697213 None:intergenic
AGACGAATTTGGGAGAGTAC+TGG 0.442326 5_3:-19696573 None:intergenic
GGATTTACATGGCCTTGTGC+TGG 0.447440 5_3:-19694555 None:intergenic
TTATAGGTCTTTAAGATCGT+TGG 0.449268 5_3:+19694462 Msa0804120:five_prime_UTR
GACGAATTTGGGAGAGTACT+GGG 0.450146 5_3:-19696572 None:intergenic
ACTTTGGAGAGTGTGATTTG+TGG 0.454735 5_3:+19696996 Msa0804120:CDS
AAATAAGGCCAACATATCAT+AGG 0.459700 5_3:-19697023 None:intergenic
TTATAAAATGATAGTGAGAA+TGG 0.459991 5_3:+19697434 Msa0804120:three_prime_UTR
TCAGTTGTATATGTTAGCTT+TGG 0.464636 5_3:+19696735 Msa0804120:CDS
TGAATGATGTTATGGTGAAT+AGG 0.471178 5_3:+19697144 Msa0804120:CDS
TAATAGTAGGTTTGTGAGTG+AGG 0.474155 5_3:+19697061 Msa0804120:CDS
TGGAAAATTGAAGAAATCAA+TGG 0.474169 5_3:+19694482 Msa0804120:exon
GAATATGGTGAATGATGTTA+TGG 0.476831 5_3:+19697136 Msa0804120:CDS
GAAAGGAATGATTGTGGGGT+GGG 0.487132 5_3:+19696905 Msa0804120:CDS
ACATATACAACTGACTTCAA+TGG 0.493056 5_3:-19696726 None:intergenic
AGCCATGGATATGGCTAAGT+TGG 0.496465 5_3:+19697187 Msa0804120:CDS
ACATCCTGGATTTGGAGAAA+AGG 0.498115 5_3:+19694749 Msa0804120:CDS
AAAGAGAAAGGAATGATTGT+GGG 0.503138 5_3:+19696900 Msa0804120:CDS
CAAGAGCAATTTCTTCGAAG+TGG 0.508844 5_3:+19696671 Msa0804120:CDS
GTTGCCTTTAAGTGATTGTT+GGG 0.509980 5_3:-19696514 None:intergenic
TAGTCTTGAATTGAAGCTTA+GGG 0.511757 5_3:-19694701 None:intergenic
TTGCATCCATATAATGTTGT+GGG 0.513327 5_3:-19694432 None:intergenic
TCAAACTAATGAGACGGTTG+TGG 0.517020 5_3:-19694647 None:intergenic
AGTTCAGCTAGCTTTAGCAT+AGG 0.517492 5_3:-19694576 None:intergenic
ATATGAAGGATGTTTGTGAT+AGG 0.519622 5_3:+19697102 Msa0804120:CDS
CATAAGAAACGTGCCAGGCA+TGG 0.531082 5_3:+19696413 Msa0804120:CDS
GTCCCCAAACTCTACACCAT+TGG 0.531566 5_3:+19696600 Msa0804120:CDS
ACATGGCCTTGTGCTGGACA+TGG 0.534043 5_3:-19694549 None:intergenic
GCTTTAGCATAGGATTTACA+TGG 0.537832 5_3:-19694566 None:intergenic
GATTTCTTCTCTCTTCATTG+GGG 0.540894 5_3:-19696766 None:intergenic
TAGTGGGTGGAACTCTACTT+TGG 0.543912 5_3:+19696980 Msa0804120:CDS
GAAGGGACTACAAAAGAGAA+AGG 0.545265 5_3:+19696888 Msa0804120:CDS
GCATCCAAGAGTGTGAGTCC+TGG 0.552305 5_3:+19697209 Msa0804120:CDS
GAAGATCAGCACATGTGGTA+AGG 0.553778 5_3:-19694526 None:intergenic
GTGGAGTGCCTATGATATGT+TGG 0.555355 5_3:+19697015 Msa0804120:CDS
CTATTGAAGGAGCTTGAGGA+AGG 0.558458 5_3:+19696870 Msa0804120:CDS
GGTTAAATTTATAGGAGATG+AGG 0.559641 5_3:+19696377 Msa0804120:intron
AAAAGAGAAAGGAATGATTG+TGG 0.560272 5_3:+19696899 Msa0804120:CDS
CGCATCATAAGAAACGTGCC+AGG 0.561151 5_3:+19696408 Msa0804120:CDS
GTGGGTGATTAGGCCAAACA+TGG 0.567713 5_3:+19696833 Msa0804120:CDS
GTGGTGGTGAAGAGGGCCAA+TGG 0.570422 5_3:-19696616 None:intergenic
AGGACTATTGAAGGAGCTTG+AGG 0.572112 5_3:+19696866 Msa0804120:CDS
AGAAAGGAATGATTGTGGGG+TGG 0.582068 5_3:+19696904 Msa0804120:CDS
TCCAAGAGTGTGAGTCCTGG+TGG 0.586272 5_3:+19697212 Msa0804120:CDS
CGAAGTGGATAGAACTTGCA+TGG 0.587606 5_3:+19696686 Msa0804120:CDS
GGAATTTGTAAAATCAGCCA+TGG 0.587876 5_3:+19697172 Msa0804120:CDS
CATGGCCTTGTGCTGGACAT+GGG 0.589394 5_3:-19694548 None:intergenic
TATTGAGGTGGTGGTGAAGA+GGG 0.591385 5_3:-19696623 None:intergenic
ATTGCATCCATATAATGTTG+TGG 0.598480 5_3:-19694433 None:intergenic
ATCTTCCCATGTCCAGCACA+AGG 0.599307 5_3:+19694543 Msa0804120:CDS
GTATTGAGGTGGTGGTGAAG+AGG 0.603611 5_3:-19696624 None:intergenic
CATGGGAAGATCAGCACATG+TGG 0.604991 5_3:-19694531 None:intergenic
TGCCAACTTAGCCATATCCA+TGG 0.606456 5_3:-19697189 None:intergenic
TGTGACAAAACTTCCTCTTG+GGG 0.606724 5_3:-19696930 None:intergenic
GAAATCATTGAGATTTGGCA+CGG 0.614016 5_3:+19696783 Msa0804120:CDS
CCTGGATTTGGAGAAAAGGT+AGG 0.615543 5_3:+19694753 Msa0804120:CDS
TATTGAAGGAGCTTGAGGAA+GGG 0.618899 5_3:+19696871 Msa0804120:CDS
AGGTTTGTGAGTGAGGTTTG+GGG 0.619191 5_3:+19697068 Msa0804120:CDS
GGCCAATGGTGTAGAGTTTG+GGG 0.619371 5_3:-19696602 None:intergenic
CATCATTCAAACTAATGAGA+CGG 0.619910 5_3:-19694653 None:intergenic
CAGCAGCCAAATCAGTAGCA+AGG 0.634571 5_3:-19694878 None:intergenic
ACGAATTTGGGAGAGTACTG+GGG 0.634682 5_3:-19696571 None:intergenic
ATTTATAGGAGATGAGGACA+TGG 0.638183 5_3:+19696383 Msa0804120:intron
TTGTGGGGATGTATGTCCAT+TGG 0.644881 5_3:-19694416 None:intergenic
TGTGGGGTGGGTTCCCCAAG+AGG 0.646579 5_3:+19696917 Msa0804120:CDS
TGTTATGGTGAATAGGAATG+AGG 0.655361 5_3:+19697151 Msa0804120:CDS
AAGAGAAAGGAATGATTGTG+GGG 0.662428 5_3:+19696901 Msa0804120:CDS
TGGATAGAACTTGCATGGTG+TGG 0.668370 5_3:+19696691 Msa0804120:CDS
TGTGGATGTACTCTGTGTTG+AGG 0.670603 5_3:-19694629 None:intergenic
TTGTTGTAGGAAGAACCACC+AGG 0.680627 5_3:-19697227 None:intergenic
GGAAGATACCATATTAGACA+AGG 0.691986 5_3:+19696479 Msa0804120:CDS
TGCATCCATATAATGTTGTG+GGG 0.704099 5_3:-19694431 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAATGTTCATTTTATCA+TGG + chr5_3:19695162-19695181 Msa0804120:intron 15.0%
!! TTATCTAACTATTTAGTTAA+AGG - chr5_3:19695212-19695231 None:intergenic 15.0%
!!! AAAATAAATACATTTTGTCA+GGG - chr5_3:19696123-19696142 None:intergenic 15.0%
!!! AAAAATAAATACATTTTGTC+AGG - chr5_3:19696124-19696143 None:intergenic 15.0%
!! AGATCATAAAAATAAGTATT+TGG + chr5_3:19697357-19697376 Msa0804120:three_prime_UTR 15.0%
!!! GTTTTTTACCAAAAAAAATT+TGG + chr5_3:19697397-19697416 Msa0804120:three_prime_UTR 15.0%
!!! AAAAACAACCAAATTTTTTT+TGG - chr5_3:19697408-19697427 None:intergenic 15.0%
!! ACAATTATATCTCTCAAAAA+AGG - chr5_3:19694813-19694832 None:intergenic 20.0%
!!! GAAAATAAGTTGCATTATTT+TGG + chr5_3:19694839-19694858 Msa0804120:CDS 20.0%
!!! ATTATTTTGGATGGAATATT+TGG + chr5_3:19694852-19694871 Msa0804120:CDS 20.0%
!!! CATTTTTTACTCAATTATTC+TGG - chr5_3:19695095-19695114 None:intergenic 20.0%
!! TAAGTAAACTAACTAAAGTA+CGG + chr5_3:19695237-19695256 Msa0804120:intron 20.0%
!! AGGGATAATATTACTAAAAT+GGG - chr5_3:19695617-19695636 None:intergenic 20.0%
!!! AATTATGGAGTATTTTATGT+TGG - chr5_3:19695677-19695696 None:intergenic 20.0%
!! ATACAAAGTAGTTTGAAAAA+TGG + chr5_3:19695848-19695867 Msa0804120:intron 20.0%
!!! CTTTTTTTTGTTGTAACTTT+TGG + chr5_3:19696153-19696172 Msa0804120:intron 20.0%
!!! ATGATTTTTTTGTTGTATTG+AGG - chr5_3:19696641-19696660 None:intergenic 20.0%
!!! TTTTTAGTAGGAGAATTAAA+TGG - chr5_3:19697309-19697328 None:intergenic 20.0%
!!! AAATATGAGAAGTTTTTAGT+AGG - chr5_3:19697321-19697340 None:intergenic 20.0%
!!! TTATAAAATGATAGTGAGAA+TGG + chr5_3:19697434-19697453 Msa0804120:three_prime_UTR 20.0%
!!! ATCATCTGAAATTAAGTTAA+GGG - chr5_3:19697507-19697526 None:intergenic 20.0%
!!! TATCATCTGAAATTAAGTTA+AGG - chr5_3:19697508-19697527 None:intergenic 20.0%
!! CTTAATTTCAGATGATAATT+TGG + chr5_3:19697511-19697530 Msa0804120:three_prime_UTR 20.0%
!!! TCTCATAATTTTGATTCTTT+AGG + chr5_3:19697574-19697593 Msa0804120:three_prime_UTR 20.0%
!! ATCAAGATATTTTGTACCAA+TGG + chr5_3:19694400-19694419 Msa0804120:five_prime_UTR 25.0%
! TGGAAAATTGAAGAAATCAA+TGG + chr5_3:19694482-19694501 Msa0804120:exon 25.0%
!!! ATAAGTTGCATTATTTTGGA+TGG + chr5_3:19694843-19694862 Msa0804120:CDS 25.0%
! CTGTTAATTAAAACTCTAAG+AGG - chr5_3:19695027-19695046 None:intergenic 25.0%
! TAGTTAAAGGAAAAGTAAAG+AGG - chr5_3:19695199-19695218 None:intergenic 25.0%
!! GTACTTTAGTTAGTTTACTT+AGG - chr5_3:19695238-19695257 None:intergenic 25.0%
! AAGTAAACTAACTAAAGTAC+GGG + chr5_3:19695238-19695257 Msa0804120:intron 25.0%
! TTATTGAAAACTCACATAAG+TGG - chr5_3:19695268-19695287 None:intergenic 25.0%
! ACTATATTGTCATCTATTCT+AGG + chr5_3:19695287-19695306 Msa0804120:intron 25.0%
!!! AACATGGTCAAATACTTTTT+CGG - chr5_3:19695478-19695497 None:intergenic 25.0%
! GGGATAATATTACTAAAATG+GGG - chr5_3:19695616-19695635 None:intergenic 25.0%
! GAGGGATAATATTACTAAAA+TGG - chr5_3:19695618-19695637 None:intergenic 25.0%
! ATGATTAAGCTCAAAGTTAA+AGG + chr5_3:19695651-19695670 Msa0804120:intron 25.0%
! TTGAAAAAACTAACAAGAGA+TGG - chr5_3:19695821-19695840 None:intergenic 25.0%
!! GGTGTTATAGACTTTAATTA+TGG + chr5_3:19696271-19696290 Msa0804120:intron 25.0%
!! AGTGTTCTGGTTAAATTTAT+AGG + chr5_3:19696369-19696388 Msa0804120:intron 25.0%
! AAATACAACCTTGTCTAATA+TGG - chr5_3:19696490-19696509 None:intergenic 25.0%
!!! ATTTTTTTGTTGTATTGAGG+TGG - chr5_3:19696638-19696657 None:intergenic 25.0%
!! ATAGCAAAAAACGATTTTTG+TGG + chr5_3:19696814-19696833 Msa0804120:CDS 25.0%
!! TAGCAAAAAACGATTTTTGT+GGG + chr5_3:19696815-19696834 Msa0804120:CDS 25.0%
!! ATTTGTTGATCAGCAAAATA+AGG - chr5_3:19697041-19697060 None:intergenic 25.0%
! CTGATCAACAAATTAATAGT+AGG + chr5_3:19697048-19697067 Msa0804120:CDS 25.0%
! TTATATACTCAACCAAATCT+TGG - chr5_3:19697256-19697275 None:intergenic 25.0%
!! AAGATTTGGTTGAGTATATA+AGG + chr5_3:19697255-19697274 Msa0804120:CDS 25.0%
!! TCTACCTAAACAATTTTACA+AGG - chr5_3:19697469-19697488 None:intergenic 25.0%
TTGCATCCATATAATGTTGT+GGG - chr5_3:19694435-19694454 None:intergenic 30.0%
ATTGCATCCATATAATGTTG+TGG - chr5_3:19694436-19694455 None:intergenic 30.0%
TGGATGCAATATCATGTTAT+AGG + chr5_3:19694446-19694465 Msa0804120:five_prime_UTR 30.0%
!! TTATAGGTCTTTAAGATCGT+TGG + chr5_3:19694462-19694481 Msa0804120:five_prime_UTR 30.0%
!!! TGTGGTAAGGATTTTTTCTT+AGG - chr5_3:19694516-19694535 None:intergenic 30.0%
CATCATTCAAACTAATGAGA+CGG - chr5_3:19694656-19694675 None:intergenic 30.0%
! TAGTCTTGAATTGAAGCTTA+GGG - chr5_3:19694704-19694723 None:intergenic 30.0%
! ATAGTCTTGAATTGAAGCTT+AGG - chr5_3:19694705-19694724 None:intergenic 30.0%
! ATTTTGTCACTGAGTTTGTA+TGG + chr5_3:19694783-19694802 Msa0804120:CDS 30.0%
! TTTATCTGTTCCAAAGCTTT+TGG + chr5_3:19694959-19694978 Msa0804120:CDS 30.0%
CAGAGTTATATACCTCTAAT+GGG - chr5_3:19694999-19695018 None:intergenic 30.0%
TCAGAGTTATATACCTCTAA+TGG - chr5_3:19695000-19695019 None:intergenic 30.0%
AGTAAACTAACTAAAGTACG+GGG + chr5_3:19695239-19695258 Msa0804120:intron 30.0%
ATGCAACCTTTGAATTAACT+AGG + chr5_3:19695357-19695376 Msa0804120:intron 30.0%
AGCATACCTAGTTAATTCAA+AGG - chr5_3:19695366-19695385 None:intergenic 30.0%
!! TAACTAGGTATGCTTGTTAT+AGG + chr5_3:19695372-19695391 Msa0804120:intron 30.0%
TTCTAACGCAACAAAATGTA+GGG + chr5_3:19695399-19695418 Msa0804120:intron 30.0%
GTATTTGACCATGTTTGTTT+CGG + chr5_3:19695483-19695502 Msa0804120:intron 30.0%
CTTAATCATAAGTGTTTGTG+AGG - chr5_3:19695640-19695659 None:intergenic 30.0%
AGTTTGAAAAATGGAGAACA+TGG + chr5_3:19695857-19695876 Msa0804120:intron 30.0%
TGAACCAATGAAATCTTCAT+CGG - chr5_3:19696056-19696075 None:intergenic 30.0%
! AGATGAATTTTGCTACACAT+TGG + chr5_3:19696216-19696235 Msa0804120:intron 30.0%
TATGAAACACTTCTAACAGA+AGG + chr5_3:19696250-19696269 Msa0804120:intron 30.0%
AATGAGTTATACTAGTGTTC+TGG + chr5_3:19696356-19696375 Msa0804120:intron 30.0%
GGTTAAATTTATAGGAGATG+AGG + chr5_3:19696377-19696396 Msa0804120:intron 30.0%
TCTTCCAAGTTTCTGTAAAA+TGG + chr5_3:19696458-19696477 Msa0804120:CDS 30.0%
! TCTTCCATTTTACAGAAACT+TGG - chr5_3:19696465-19696484 None:intergenic 30.0%
! ACATATACAACTGACTTCAA+TGG - chr5_3:19696729-19696748 None:intergenic 30.0%
! TCAGTTGTATATGTTAGCTT+TGG + chr5_3:19696735-19696754 Msa0804120:CDS 30.0%
TGATTTCTTCTCTCTTCATT+GGG - chr5_3:19696770-19696789 None:intergenic 30.0%
ATGATTTCTTCTCTCTTCAT+TGG - chr5_3:19696771-19696790 None:intergenic 30.0%
GAGAAGAAATCATTGAGATT+TGG + chr5_3:19696778-19696797 Msa0804120:CDS 30.0%
TCAAGAAAAAGGACTATTGA+AGG + chr5_3:19696857-19696876 Msa0804120:CDS 30.0%
AAAAGAGAAAGGAATGATTG+TGG + chr5_3:19696899-19696918 Msa0804120:CDS 30.0%
AAAGAGAAAGGAATGATTGT+GGG + chr5_3:19696900-19696919 Msa0804120:CDS 30.0%
AAATAAGGCCAACATATCAT+AGG - chr5_3:19697026-19697045 None:intergenic 30.0%
ATATGAAGGATGTTTGTGAT+AGG + chr5_3:19697102-19697121 Msa0804120:CDS 30.0%
TAGGAATGTTGTTGAGAATA+TGG + chr5_3:19697121-19697140 Msa0804120:CDS 30.0%
GAATATGGTGAATGATGTTA+TGG + chr5_3:19697136-19697155 Msa0804120:CDS 30.0%
TGAATGATGTTATGGTGAAT+AGG + chr5_3:19697144-19697163 Msa0804120:CDS 30.0%
TGGCAAAATTCACATCTTAT+GGG - chr5_3:19697289-19697308 None:intergenic 30.0%
ATGGCAAAATTCACATCTTA+TGG - chr5_3:19697290-19697309 None:intergenic 30.0%
TTTGGACGTGAAAAAATTGA+TGG + chr5_3:19697375-19697394 Msa0804120:three_prime_UTR 30.0%
!! GTAGCCTTGTAAAATTGTTT+AGG + chr5_3:19697462-19697481 Msa0804120:three_prime_UTR 30.0%
TACATCCCCACAACATTATA+TGG + chr5_3:19694426-19694445 Msa0804120:five_prime_UTR 35.0%
TGCATCCATATAATGTTGTG+GGG - chr5_3:19694434-19694453 None:intergenic 35.0%
GCTTTAGCATAGGATTTACA+TGG - chr5_3:19694569-19694588 None:intergenic 35.0%
CTGTGTTGAGGAAAGTTATA+TGG - chr5_3:19694620-19694639 None:intergenic 35.0%
! TATCTCTGATTTTCACAGTG+AGG + chr5_3:19694722-19694741 Msa0804120:CDS 35.0%
! TATTAGTGCTTGTTGCTTCT+GGG + chr5_3:19694932-19694951 Msa0804120:CDS 35.0%
CTTCTAACGCAACAAAATGT+AGG + chr5_3:19695398-19695417 Msa0804120:intron 35.0%
TCTAACGCAACAAAATGTAG+GGG + chr5_3:19695400-19695419 Msa0804120:intron 35.0%
!!! TTTTTCGGTTTGGTTCGATT+TGG - chr5_3:19695463-19695482 None:intergenic 35.0%
!!! GGTCAAATACTTTTTCGGTT+TGG - chr5_3:19695473-19695492 None:intergenic 35.0%
!! GTTTTGAACCGAAACAAACA+TGG - chr5_3:19695494-19695513 None:intergenic 35.0%
! TAAACCGATCTAGTTTGGTT+CGG + chr5_3:19695529-19695548 Msa0804120:intron 35.0%
TATTACTAAAATGGGGAGTG+AGG - chr5_3:19695609-19695628 None:intergenic 35.0%
ATCATAAGTGTTTGTGAGGA+GGG - chr5_3:19695636-19695655 None:intergenic 35.0%
AATCATAAGTGTTTGTGAGG+AGG - chr5_3:19695637-19695656 None:intergenic 35.0%
GGGAGAAAGTGAATGAATTA+TGG - chr5_3:19695692-19695711 None:intergenic 35.0%
TGATGAGATGAGATGATGAT+GGG - chr5_3:19695712-19695731 None:intergenic 35.0%
!! TTTAGATTGGTTCGGTTGAT+CGG - chr5_3:19695976-19695995 None:intergenic 35.0%
!! TGGTTTGGTTTAGATTGGTT+CGG - chr5_3:19695984-19696003 None:intergenic 35.0%
CAATCTAAACCAAACCAAAC+CGG + chr5_3:19695987-19696006 Msa0804120:intron 35.0%
CAAACCGATGAAGATTTCAT+TGG + chr5_3:19696049-19696068 Msa0804120:intron 35.0%
TGCGACTGATGCAAATAATA+TGG + chr5_3:19696313-19696332 Msa0804120:intron 35.0%
ATTTATAGGAGATGAGGACA+TGG + chr5_3:19696383-19696402 Msa0804120:intron 35.0%
GGAAGATACCATATTAGACA+AGG + chr5_3:19696479-19696498 Msa0804120:CDS 35.0%
GTTGCCTTTAAGTGATTGTT+GGG - chr5_3:19696517-19696536 None:intergenic 35.0%
!! TTTTTGTTGTATTGAGGTGG+TGG - chr5_3:19696635-19696654 None:intergenic 35.0%
GATTTCTTCTCTCTTCATTG+GGG - chr5_3:19696769-19696788 None:intergenic 35.0%
GAAATCATTGAGATTTGGCA+CGG + chr5_3:19696783-19696802 Msa0804120:CDS 35.0%
! AACGATTTTTGTGGGTGATT+AGG + chr5_3:19696823-19696842 Msa0804120:CDS 35.0%
! CCTTTTTCTTGAACCATGTT+TGG - chr5_3:19696849-19696868 None:intergenic 35.0%
CCAAACATGGTTCAAGAAAA+AGG + chr5_3:19696846-19696865 Msa0804120:CDS 35.0%
AAGAGAAAGGAATGATTGTG+GGG + chr5_3:19696901-19696920 Msa0804120:CDS 35.0%
! GTTTTGTCACACAAAGCAAT+TGG + chr5_3:19696942-19696961 Msa0804120:CDS 35.0%
!!! GTGCTTTTTTGACACATAGT+GGG + chr5_3:19696964-19696983 Msa0804120:CDS 35.0%
TAATAGTAGGTTTGTGAGTG+AGG + chr5_3:19697061-19697080 Msa0804120:CDS 35.0%
TGTTATGGTGAATAGGAATG+AGG + chr5_3:19697151-19697170 Msa0804120:CDS 35.0%
GGAATTTGTAAAATCAGCCA+TGG + chr5_3:19697172-19697191 Msa0804120:CDS 35.0%
TGTAAAATCAGCCATGGATA+TGG + chr5_3:19697178-19697197 Msa0804120:CDS 35.0%
CAAATCTTGGAAGTTGTTGT+AGG - chr5_3:19697243-19697262 None:intergenic 35.0%
CTACAACAACTTCCAAGATT+TGG + chr5_3:19697241-19697260 Msa0804120:CDS 35.0%
!! AGTTCAGCTAGCTTTAGCAT+AGG - chr5_3:19694579-19694598 None:intergenic 40.0%
TCAAACTAATGAGACGGTTG+TGG - chr5_3:19694650-19694669 None:intergenic 40.0%
ACATCCTGGATTTGGAGAAA+AGG + chr5_3:19694749-19694768 Msa0804120:CDS 40.0%
! CTATTAGTGCTTGTTGCTTC+TGG + chr5_3:19694931-19694950 Msa0804120:CDS 40.0%
TCATTGCACTCCAAAAGCTT+TGG - chr5_3:19694972-19694991 None:intergenic 40.0%
TGCAATGAACTTCCCATTAG+AGG + chr5_3:19694984-19695003 Msa0804120:CDS 40.0%
!! CCATAAGATGGTGTTTTGAG+TGG - chr5_3:19695120-19695139 None:intergenic 40.0%
CCACTCAAAACACCATCTTA+TGG + chr5_3:19695117-19695136 Msa0804120:intron 40.0%
CACCATCTTATGGATCTAGT+AGG + chr5_3:19695127-19695146 Msa0804120:intron 40.0%
CACCTACTAGATCCATAAGA+TGG - chr5_3:19695132-19695151 None:intergenic 40.0%
TCTTATGGATCTAGTAGGTG+AGG + chr5_3:19695132-19695151 Msa0804120:intron 40.0%
! ACAAAATGTAGGGGTGTAAG+TGG + chr5_3:19695409-19695428 Msa0804120:intron 40.0%
!! TAGATCGGTTTAGGTTGGTT+TGG - chr5_3:19695521-19695540 None:intergenic 40.0%
! CAAACTAGATCGGTTTAGGT+TGG - chr5_3:19695526-19695545 None:intergenic 40.0%
CAACCTAAACCGATCTAGTT+TGG + chr5_3:19695524-19695543 Msa0804120:intron 40.0%
! GAACCAAACTAGATCGGTTT+AGG - chr5_3:19695530-19695549 None:intergenic 40.0%
AGAACCGAACCAAACTAGAT+CGG - chr5_3:19695536-19695555 None:intergenic 40.0%
!! ATCTAGTTTGGTTCGGTTCT+CGG + chr5_3:19695536-19695555 Msa0804120:intron 40.0%
GTGATGAGATGAGATGATGA+TGG - chr5_3:19695713-19695732 None:intergenic 40.0%
!! CGGTTTGGTTTGGTTTAGAT+TGG - chr5_3:19695989-19696008 None:intergenic 40.0%
! ACATTTTGTCAGGGAAGCAA+CGG - chr5_3:19696114-19696133 None:intergenic 40.0%
CTGACCCAACAATCACTTAA+AGG + chr5_3:19696510-19696529 Msa0804120:CDS 40.0%
CGTTGCCTTTAAGTGATTGT+TGG - chr5_3:19696518-19696537 None:intergenic 40.0%
CACTTCGAAGAAATTGCTCT+TGG - chr5_3:19696673-19696692 None:intergenic 40.0%
CAAGAGCAATTTCTTCGAAG+TGG + chr5_3:19696671-19696690 Msa0804120:CDS 40.0%
TATTGAAGGAGCTTGAGGAA+GGG + chr5_3:19696871-19696890 Msa0804120:CDS 40.0%
GAAGGGACTACAAAAGAGAA+AGG + chr5_3:19696888-19696907 Msa0804120:CDS 40.0%
TGTGACAAAACTTCCTCTTG+GGG - chr5_3:19696933-19696952 None:intergenic 40.0%
GTGTGACAAAACTTCCTCTT+GGG - chr5_3:19696934-19696953 None:intergenic 40.0%
TGTGTGACAAAACTTCCTCT+TGG - chr5_3:19696935-19696954 None:intergenic 40.0%
!!! GGTGCTTTTTTGACACATAG+TGG + chr5_3:19696963-19696982 Msa0804120:CDS 40.0%
!!! CTTTTTTGACACATAGTGGG+TGG + chr5_3:19696967-19696986 Msa0804120:CDS 40.0%
! ACTTTGGAGAGTGTGATTTG+TGG + chr5_3:19696996-19697015 Msa0804120:CDS 40.0%
TAGGTTTGTGAGTGAGGTTT+GGG + chr5_3:19697067-19697086 Msa0804120:CDS 40.0%
TTGTGGGGATGTATGTCCAT+TGG - chr5_3:19694419-19694438 None:intergenic 45.0%
GAAGATCAGCACATGTGGTA+AGG - chr5_3:19694529-19694548 None:intergenic 45.0%
TGTGGATGTACTCTGTGTTG+AGG - chr5_3:19694632-19694651 None:intergenic 45.0%
GAGGAGAAACATCCTGGATT+TGG + chr5_3:19694741-19694760 Msa0804120:CDS 45.0%
! CCTACCTTTTCTCCAAATCC+AGG - chr5_3:19694756-19694775 None:intergenic 45.0%
CCTGGATTTGGAGAAAAGGT+AGG + chr5_3:19694753-19694772 Msa0804120:CDS 45.0%
! TGGTGACCTTGCTACTGATT+TGG + chr5_3:19694872-19694891 Msa0804120:CDS 45.0%
!! ACTGATTTGGCTGCTGAGTT+TGG + chr5_3:19694885-19694904 Msa0804120:CDS 45.0%
!! CTGATTTGGCTGCTGAGTTT+GGG + chr5_3:19694886-19694905 Msa0804120:CDS 45.0%
!! CGGTTTAGGTTGGTTTGGTT+TGG - chr5_3:19695516-19695535 None:intergenic 45.0%
AGAAGAACCGATGAACCGAA+CGG + chr5_3:19695576-19695595 Msa0804120:intron 45.0%
TTAGCATCCGTTCGGTTCAT+CGG - chr5_3:19695586-19695605 None:intergenic 45.0%
GATGAGTTAGGTGTGACTAG+TGG - chr5_3:19695774-19695793 None:intergenic 45.0%
AAGAAACCGAACCAACTAGC+CGG - chr5_3:19696009-19696028 None:intergenic 45.0%
!!! GTTCGGTTTGGATCGGTTTT+TGG - chr5_3:19696092-19696111 None:intergenic 45.0%
! CGAAGCAAATTTTCCATGCC+TGG - chr5_3:19696429-19696448 None:intergenic 45.0%
!! ACGAATTTGGGAGAGTACTG+GGG - chr5_3:19696574-19696593 None:intergenic 45.0%
!! GACGAATTTGGGAGAGTACT+GGG - chr5_3:19696575-19696594 None:intergenic 45.0%
! AGACGAATTTGGGAGAGTAC+TGG - chr5_3:19696576-19696595 None:intergenic 45.0%
GGGGACTTGAAGACGAATTT+GGG - chr5_3:19696586-19696605 None:intergenic 45.0%
TGGGGACTTGAAGACGAATT+TGG - chr5_3:19696587-19696606 None:intergenic 45.0%
! TATTGAGGTGGTGGTGAAGA+GGG - chr5_3:19696626-19696645 None:intergenic 45.0%
CGAAGTGGATAGAACTTGCA+TGG + chr5_3:19696686-19696705 Msa0804120:CDS 45.0%
TGGATAGAACTTGCATGGTG+TGG + chr5_3:19696691-19696710 Msa0804120:CDS 45.0%
AGGACTATTGAAGGAGCTTG+AGG + chr5_3:19696866-19696885 Msa0804120:CDS 45.0%
CTATTGAAGGAGCTTGAGGA+AGG + chr5_3:19696870-19696889 Msa0804120:CDS 45.0%
AGAAAGGAATGATTGTGGGG+TGG + chr5_3:19696904-19696923 Msa0804120:CDS 45.0%
GAAAGGAATGATTGTGGGGT+GGG + chr5_3:19696905-19696924 Msa0804120:CDS 45.0%
! TAGTGGGTGGAACTCTACTT+TGG + chr5_3:19696980-19696999 Msa0804120:CDS 45.0%
! GTGGAGTGCCTATGATATGT+TGG + chr5_3:19697015-19697034 Msa0804120:CDS 45.0%
GTAGGTTTGTGAGTGAGGTT+TGG + chr5_3:19697066-19697085 Msa0804120:CDS 45.0%
AGGTTTGTGAGTGAGGTTTG+GGG + chr5_3:19697068-19697087 Msa0804120:CDS 45.0%
TGAGTGAGGTTTGGGGAATT+GGG + chr5_3:19697075-19697094 Msa0804120:CDS 45.0%
!! GGGAATTGGGTTGGATATGA+AGG + chr5_3:19697088-19697107 Msa0804120:CDS 45.0%
AGCCATGGATATGGCTAAGT+TGG + chr5_3:19697187-19697206 Msa0804120:CDS 45.0%
TGCCAACTTAGCCATATCCA+TGG - chr5_3:19697192-19697211 None:intergenic 45.0%
TTGTTGTAGGAAGAACCACC+AGG - chr5_3:19697230-19697249 None:intergenic 45.0%
CATGGGAAGATCAGCACATG+TGG - chr5_3:19694534-19694553 None:intergenic 50.0%
ATCTTCCCATGTCCAGCACA+AGG + chr5_3:19694543-19694562 Msa0804120:CDS 50.0%
!! GGATTTACATGGCCTTGTGC+TGG - chr5_3:19694558-19694577 None:intergenic 50.0%
CACAGTGAGGAGAAACATCC+TGG + chr5_3:19694735-19694754 Msa0804120:CDS 50.0%
CAGCAGCCAAATCAGTAGCA+AGG - chr5_3:19694881-19694900 None:intergenic 50.0%
GAGTGAGGTTAGCATCCGTT+CGG - chr5_3:19695594-19695613 None:intergenic 50.0%
GTGGTGAGGAACGATGAGTT+AGG - chr5_3:19695786-19695805 None:intergenic 50.0%
CAAGAGATGGACGATCCTAG+CGG - chr5_3:19695808-19695827 None:intergenic 50.0%
ACCAAACCAAACCGGCTAGT+TGG + chr5_3:19695995-19696014 Msa0804120:intron 50.0%
!! ACCAACTAGCCGGTTTGGTT+TGG - chr5_3:19695999-19696018 None:intergenic 50.0%
! ACCAAACCGGCTAGTTGGTT+CGG + chr5_3:19696000-19696019 Msa0804120:intron 50.0%
!! AGCAACGGTTCGGTTTGGAT+CGG - chr5_3:19696099-19696118 None:intergenic 50.0%
TTGTCAGGGAAGCAACGGTT+CGG - chr5_3:19696109-19696128 None:intergenic 50.0%
CGCATCATAAGAAACGTGCC+AGG + chr5_3:19696408-19696427 Msa0804120:CDS 50.0%
CATAAGAAACGTGCCAGGCA+TGG + chr5_3:19696413-19696432 Msa0804120:CDS 50.0%
GTCCCCAAACTCTACACCAT+TGG + chr5_3:19696600-19696619 Msa0804120:CDS 50.0%
GGCCAATGGTGTAGAGTTTG+GGG - chr5_3:19696605-19696624 None:intergenic 50.0%
GGGCCAATGGTGTAGAGTTT+GGG - chr5_3:19696606-19696625 None:intergenic 50.0%
AGGGCCAATGGTGTAGAGTT+TGG - chr5_3:19696607-19696626 None:intergenic 50.0%
! GTATTGAGGTGGTGGTGAAG+AGG - chr5_3:19696627-19696646 None:intergenic 50.0%
GTGGGTGATTAGGCCAAACA+TGG + chr5_3:19696833-19696852 Msa0804120:CDS 50.0%
GTGAGTGAGGTTTGGGGAAT+TGG + chr5_3:19697074-19697093 Msa0804120:CDS 50.0%
TGAGGTTTGGGGAATTGGGT+TGG + chr5_3:19697079-19697098 Msa0804120:CDS 50.0%
!! CATGGCCTTGTGCTGGACAT+GGG - chr5_3:19694551-19694570 None:intergenic 55.0%
!! ACATGGCCTTGTGCTGGACA+TGG - chr5_3:19694552-19694571 None:intergenic 55.0%
ACCGAACCAACTAGCCGGTT+TGG - chr5_3:19696004-19696023 None:intergenic 55.0%
!! AGGGAAGCAACGGTTCGGTT+TGG - chr5_3:19696104-19696123 None:intergenic 55.0%
! GCATCCAAGAGTGTGAGTCC+TGG + chr5_3:19697209-19697228 Msa0804120:CDS 55.0%
! TCCAAGAGTGTGAGTCCTGG+TGG + chr5_3:19697212-19697231 Msa0804120:CDS 55.0%
ACCACCAGGACTCACACTCT+TGG - chr5_3:19697216-19697235 None:intergenic 55.0%
CATCGTTCCTCACCACCGCT+AGG + chr5_3:19695790-19695809 Msa0804120:intron 60.0%
GAGATGGACGATCCTAGCGG+TGG - chr5_3:19695805-19695824 None:intergenic 60.0%
! GTGGTGGTGAAGAGGGCCAA+TGG - chr5_3:19696619-19696638 None:intergenic 60.0%
GGACGATCCTAGCGGTGGTG+AGG - chr5_3:19695800-19695819 None:intergenic 65.0%
! TGTGGGGTGGGTTCCCCAAG+AGG + chr5_3:19696917-19696936 Msa0804120:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 19694392 19697671 19694392 ID=Msa0804120;Name=Msa0804120
chr5_3 mRNA 19694392 19697671 19694392 ID=Msa0804120-mRNA-1;Parent=Msa0804120;Name=Msa0804120-mRNA-1;_AED=0.32;_eAED=0.32;_QI=109|1|1|1|1|1|2|379|468
chr5_3 exon 19694392 19695005 19694392 ID=Msa0804120-mRNA-1:exon:8075;Parent=Msa0804120-mRNA-1
chr5_3 exon 19696391 19697671 19696391 ID=Msa0804120-mRNA-1:exon:8076;Parent=Msa0804120-mRNA-1
chr5_3 five_prime_UTR 19694392 19694500 19694392 ID=Msa0804120-mRNA-1:five_prime_utr;Parent=Msa0804120-mRNA-1
chr5_3 CDS 19694501 19695005 19694501 ID=Msa0804120-mRNA-1:cds;Parent=Msa0804120-mRNA-1
chr5_3 CDS 19696391 19697292 19696391 ID=Msa0804120-mRNA-1:cds;Parent=Msa0804120-mRNA-1
chr5_3 three_prime_UTR 19697293 19697671 19697293 ID=Msa0804120-mRNA-1:three_prime_utr;Parent=Msa0804120-mRNA-1
Gene Sequence

>Msa0804120

ATGGATATACAACCTAAGAAAAAATCCTTACCACATGTGCTGATCTTCCCATGTCCAGCACAAGGCCATGTAAATCCTATGCTAAAGCTAGCTGAACTTCTTGCTATTCAAAATCTCCATATAACTTTCCTCAACACAGAGTACATCCACAACCGTCTCATTAGTTTGAATGATGATATTCAAGCTCTTTTAGAATGTTACCCTAAGCTTCAATTCAAGACTATCTCTGATTTTCACAGTGAGGAGAAACATCCTGGATTTGGAGAAAAGGTAGGTGATGTAATTTTGTCACTGAGTTTGTATGGTAAGCCTTTTTTGAGAGATATAATTGTCTCTGAGAAAATAAGTTGCATTATTTTGGATGGAATATTTGGTGACCTTGCTACTGATTTGGCTGCTGAGTTTGGGATACAATTGATTCATTTTCGTACTATTAGTGCTTGTTGCTTCTGGGCTTATTTATCTGTTCCAAAGCTTTTGGAGTGCAATGAACTTCCCATTAGAGGAGATGAGGACATGGATCGCATCATAAGAAACGTGCCAGGCATGGAAAATTTGCTTCGATGTAGAGATCTTCCAAGTTTCTGTAAAATGGAAGATACCATATTAGACAAGGTTGTATTTCTGACCCAACAATCACTTAAAGGCAACGCATTAATACTCAACACGTTCGAGAATCTAGAATCCCCAGTACTCTCCCAAATTCGTCTTCAAGTCCCCAAACTCTACACCATTGGCCCTCTTCACCACCACCTCAATACAACAAAAAAATCATCATCATCATCCAAGAGCAATTTCTTCGAAGTGGATAGAACTTGCATGGTGTGGCTCGAATCTCAACCATTGAAGTCAGTTGTATATGTTAGCTTTGGTAGCATCACCCCAATGAAGAGAGAAGAAATCATTGAGATTTGGCACGGTTTATTGAATAGCAAAAAACGATTTTTGTGGGTGATTAGGCCAAACATGGTTCAAGAAAAAGGACTATTGAAGGAGCTTGAGGAAGGGACTACAAAAGAGAAAGGAATGATTGTGGGGTGGGTTCCCCAAGAGGAAGTTTTGTCACACAAAGCAATTGGTGCTTTTTTGACACATAGTGGGTGGAACTCTACTTTGGAGAGTGTGATTTGTGGAGTGCCTATGATATGTTGGCCTTATTTTGCTGATCAACAAATTAATAGTAGGTTTGTGAGTGAGGTTTGGGGAATTGGGTTGGATATGAAGGATGTTTGTGATAGGAATGTTGTTGAGAATATGGTGAATGATGTTATGGTGAATAGGAATGAGGAATTTGTAAAATCAGCCATGGATATGGCTAAGTTGGCATCCAAGAGTGTGAGTCCTGGTGGTTCTTCCTACAACAACTTCCAAGATTTGGTTGAGTATATAAGGTCTACTAGCCCATAA
Protein sequence

>Msa0804120

MDIQPKKKSLPHVLIFPCPAQGHVNPMLKLAELLAIQNLHITFLNTEYIHNRLISLNDDIQALLECYPKLQFKTISDFHSEEKHPGFGEKVGDVILSLSLYGKPFLRDIIVSEKISCIILDGIFGDLATDLAAEFGIQLIHFRTISACCFWAYLSVPKLLECNELPIRGDEDMDRIIRNVPGMENLLRCRDLPSFCKMEDTILDKVVFLTQQSLKGNALILNTFENLESPVLSQIRLQVPKLYTIGPLHHHLNTTKKSSSSSKSNFFEVDRTCMVWLESQPLKSVVYVSFGSITPMKREEIIEIWHGLLNSKKRFLWVIRPNMVQEKGLLKELEEGTTKEKGMIVGWVPQEEVLSHKAIGAFLTHSGWNSTLESVICGVPMICWPYFADQQINSRFVSEVWGIGLDMKDVCDRNVVENMVNDVMVNRNEEFVKSAMDMAKLASKSVSPGGSSYNNFQDLVEYIRSTSP*