AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0316910


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316910 MtrunA17_Chr2g0289651 98.113 106 2 0 1 106 1 106 9.19e-76 218
Msa0316910 MtrunA17_Chr2g0289641 68.868 106 33 0 1 106 1 106 8.17e-55 166
Msa0316910 MtrunA17_Chr1g0210881 36.634 101 64 0 6 106 4 104 1.47e-18 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0316910 AT4G22310.1 86.000 100 14 0 1 100 1 100 2.23e-64 190
Msa0316910 AT4G14695.3 77.778 108 22 1 1 106 1 108 1.97e-60 180
Msa0316910 AT4G14695.1 77.778 108 22 1 1 106 1 108 1.97e-60 180
Msa0316910 AT4G05590.1 80.000 100 20 0 1 100 1 100 5.84e-60 179
Msa0316910 AT4G05590.2 57.971 138 20 1 1 100 1 138 9.31e-53 162
Msa0316910 AT4G05590.3 88.406 69 8 0 1 69 1 69 1.50e-42 134
Msa0316910 AT4G14695.2 61.111 108 22 2 1 106 1 90 4.74e-41 130
Msa0316910 AT5G20090.2 41.121 107 62 1 1 106 1 107 2.76e-22 84.3
Msa0316910 AT5G20090.1 41.121 107 62 1 1 106 1 107 2.76e-22 84.3
Msa0316910 AT5G20090.4 41.121 107 62 1 1 106 1 107 2.76e-22 84.3
Msa0316910 AT5G20090.3 41.489 94 55 0 1 94 1 94 6.38e-21 80.5

Find 37 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAAAGCTTCAAGCTTTC+TGG 0.044366 2_4:-14206291 Msa0316910:CDS
TGTTAAATAAATAAATAAAA+AGG 0.191542 2_4:+14203065 None:intergenic
ATATATTTGAAATTTCATTT+TGG 0.208618 2_4:-14203136 Msa0316910:three_prime_UTR
TCGAAGTAACTCACTGGTTT+TGG 0.211024 2_4:+14206252 None:intergenic
GATTGAAAGCGAATTCGATT+TGG 0.315077 2_4:+14206355 None:intergenic
TATCAAGTTATTTGTGTACT+TGG 0.339842 2_4:-14203194 Msa0316910:three_prime_UTR
CTTTCCTATCCTCAACAAAT+AGG 0.357519 2_4:-14204735 Msa0316910:intron
TTGCAACGTTCACAGCAAAA+AGG 0.357937 2_4:+14203719 None:intergenic
AAGAAGAACGATTAAATTCA+TGG 0.368955 2_4:-14206317 Msa0316910:exon
ATTGAAAGCGAATTCGATTT+GGG 0.381444 2_4:+14206356 None:intergenic
TGAGGATAGGAAAGCTTCTC+TGG 0.382144 2_4:+14204744 None:intergenic
ATTTGCGTGACAGTTGGTAT+AGG 0.405723 2_4:+14203683 None:intergenic
GACACAGCTGTTACAGCTAC+TGG 0.418439 2_4:-14204502 Msa0316910:intron
TTACAGCTACTGGACTTATC+TGG 0.420347 2_4:-14204492 Msa0316910:CDS
CAAAAGCACAGGTCTTAACT+TGG 0.425631 2_4:+14202999 None:intergenic
CAACATGAAAATTGCAATCC+AGG 0.446735 2_4:+14203162 None:intergenic
AACGTTGCAATGGCAGGAAC+TGG 0.478710 2_4:-14203706 Msa0316910:CDS
TGTACTTGGAGCTCGATACC+TGG 0.488738 2_4:-14203180 Msa0316910:three_prime_UTR
CTGATACCCCACTTAAATGT+AGG 0.491087 2_4:+14204798 None:intergenic
TTTGGGCACCTACATTTAAG+TGG 0.501597 2_4:-14204806 Msa0316910:CDS
CATACCTATTTGTTGAGGAT+AGG 0.535886 2_4:+14204731 None:intergenic
AGGGGATGAATTACGGCAGA+TGG 0.539765 2_4:+14203085 None:intergenic
TTGGGCACCTACATTTAAGT+GGG 0.548150 2_4:-14204805 Msa0316910:CDS
GCTGTGAACGTTGCAATGGC+AGG 0.549298 2_4:-14203712 Msa0316910:CDS
TGACATTCCTTCAAAAGCAC+AGG 0.561077 2_4:+14202988 None:intergenic
GCTTTCTGGAATCATCCAGC+TGG 0.566796 2_4:-14206277 Msa0316910:CDS
ATAATATAGTTTGCAAGTGG+TGG 0.572798 2_4:-14206387 Msa0316910:five_prime_UTR
ACCGCAATTTGCGTGACAGT+TGG 0.573648 2_4:+14203677 None:intergenic
ACCAACTGTCACGCAAATTG+CGG 0.595594 2_4:-14203678 Msa0316910:intron
ATGCGCATACCTATTTGTTG+AGG 0.604492 2_4:+14204726 None:intergenic
GCAAGATTATTCGTCAGAGA+AGG 0.608255 2_4:-14203252 Msa0316910:CDS
TGCAAAGAAGACTTACAACA+AGG 0.615838 2_4:+14203029 None:intergenic
CAAATAATATAGTTTGCAAG+TGG 0.621929 2_4:-14206390 Msa0316910:five_prime_UTR
GGATGAATTACGGCAGATGG+AGG 0.622804 2_4:+14203088 None:intergenic
GGATAGGAAAGCTTCTCTGG+TGG 0.644326 2_4:+14204747 None:intergenic
GCAAAGAAGACTTACAACAA+GGG 0.649985 2_4:+14203030 None:intergenic
TGGGCACCTACATTTAAGTG+GGG 0.659300 2_4:-14204804 Msa0316910:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATATATTTGAAATTTCATTT+TGG - chr2_4:14206263-14206282 Msa0316910:intron 10.0%
!!! TATATTTGAAATTTCATTTT+GGG - chr2_4:14206264-14206283 Msa0316910:intron 10.0%
!! AAAAGTCAAATTAAGTTAAT+CGG + chr2_4:14203328-14203347 None:intergenic 15.0%
!!! TAACTTTGTATATATGATTT+TGG + chr2_4:14204072-14204091 None:intergenic 15.0%
!! AAATCATATATACAAAGTTA+TGG - chr2_4:14203671-14203690 Msa0316910:intron 15.0%
!!! TAACTTTGTATATATGATTT+TGG - chr2_4:14204072-14204091 Msa0316910:intron 15.0%
!!! TTTTTAAGGTTTTTATTTCT+TGG + chr2_4:14205371-14205390 None:intergenic 15.0%
!! TTAAGATACATATATAAGTA+TGG + chr2_4:14206108-14206127 None:intergenic 15.0%
!! TTCATAAATAAAAACACGAA+TGG + chr2_4:14203192-14203211 None:intergenic 20.0%
!! TTTGATTGCTTTGTAAAAAT+TGG - chr2_4:14203345-14203364 Msa0316910:intron 20.0%
!! TTGATTGCTTTGTAAAAATT+GGG - chr2_4:14203346-14203365 Msa0316910:intron 20.0%
!!! TAAAAATTGGGTCATTTTTA+GGG - chr2_4:14203358-14203377 Msa0316910:intron 20.0%
!! ACTTATTATTATCAAAGATC+TGG - chr2_4:14203459-14203478 Msa0316910:intron 20.0%
!! GATAAAAGTGGTTAAATATA+GGG + chr2_4:14204149-14204168 None:intergenic 20.0%
!! TGATAAAAGTGGTTAAATAT+AGG + chr2_4:14204150-14204169 None:intergenic 20.0%
!! AAGGATTTAATTGATAAAAG+TGG + chr2_4:14204161-14204180 None:intergenic 20.0%
!! CCAAATTCAATAGAAATATT+AGG + chr2_4:14204246-14204265 None:intergenic 20.0%
!!! CCTAATATTTCTATTGAATT+TGG - chr2_4:14204243-14204262 Msa0316910:intron 20.0%
!!! AGAAATACACATTTTCAAAA+GGG + chr2_4:14204738-14204757 None:intergenic 20.0%
!! TAGTATATATTCTCATGTAT+TGG - chr2_4:14204833-14204852 Msa0316910:intron 20.0%
!! AGTATATATTCTCATGTATT+GGG - chr2_4:14204834-14204853 Msa0316910:intron 20.0%
!!! AAGTTTTGTTGTTTTTTCAA+AGG - chr2_4:14204959-14204978 Msa0316910:intron 20.0%
!! ATATTTCATGAACAAGTTAA+AGG + chr2_4:14204992-14205011 None:intergenic 20.0%
!! ATGAAATATAGAAATACTAG+TGG - chr2_4:14205003-14205022 Msa0316910:intron 20.0%
!! ACAATTAACTAAATGAACTT+TGG - chr2_4:14205479-14205498 Msa0316910:intron 20.0%
!!! ATCTAGTTTATTTTCTTTAG+TGG - chr2_4:14205898-14205917 Msa0316910:intron 20.0%
!!! TCTAGTTTATTTTCTTTAGT+GGG - chr2_4:14205899-14205918 Msa0316910:intron 20.0%
!! AAGGTTAAACTACAAAATAA+AGG + chr2_4:14206021-14206040 None:intergenic 20.0%
!! CAAATAATATAGTTTGCAAG+TGG - chr2_4:14203009-14203028 Msa0316910:three_prime_UTR 25.0%
! AAGAAGAACGATTAAATTCA+TGG - chr2_4:14203082-14203101 Msa0316910:three_prime_UTR 25.0%
!!! TCGTTGTTTTTCATTTGATA+AGG - chr2_4:14203213-14203232 Msa0316910:three_prime_UTR 25.0%
! CAAATCCAATAACTGTTATA+CGG + chr2_4:14203244-14203263 None:intergenic 25.0%
!!! GTAAAAATTGGGTCATTTTT+AGG - chr2_4:14203357-14203376 Msa0316910:intron 25.0%
! GAATTATAGAACGAAATTGT+TGG - chr2_4:14203481-14203500 Msa0316910:intron 25.0%
! AAAGTAGAGGACTAATTTAT+TGG + chr2_4:14203571-14203590 None:intergenic 25.0%
!! TATATACTGACTATCCAATT+AGG - chr2_4:14203891-14203910 Msa0316910:intron 25.0%
! GGTGAAAAATGTAATCTATT+TGG + chr2_4:14204453-14204472 None:intergenic 25.0%
!! CAGAAATACACATTTTCAAA+AGG + chr2_4:14204739-14204758 None:intergenic 25.0%
!! GTATTTCTGAATTCTTTGAA+AGG - chr2_4:14204750-14204769 Msa0316910:CDS 25.0%
! ATTCCATAATTCATTCACTT+GGG + chr2_4:14204786-14204805 None:intergenic 25.0%
! GAAAAAACAACAAAACTTAC+TGG + chr2_4:14204957-14204976 None:intergenic 25.0%
! TAACTAAGCAACAAAAAAAC+AGG + chr2_4:14205245-14205264 None:intergenic 25.0%
! TTACTATGTTGCAGAAAAAT+TGG - chr2_4:14205655-14205674 Msa0316910:intron 25.0%
! TTGAATCATAATGTAGCAAA+TGG + chr2_4:14205791-14205810 None:intergenic 25.0%
!!! TTGTTGATGATATGTTAGTT+TGG - chr2_4:14205832-14205851 Msa0316910:intron 25.0%
!!! TGTTTGAGTTTCCAATTTTT+GGG + chr2_4:14205869-14205888 None:intergenic 25.0%
! CTATAGAAAAAGAATGATGA+CGG - chr2_4:14206170-14206189 Msa0316910:intron 25.0%
! TATCAAGTTATTTGTGTACT+TGG - chr2_4:14206205-14206224 Msa0316910:intron 25.0%
! AATAAAAAGGGGATGAATTA+CGG + chr2_4:14206324-14206343 None:intergenic 25.0%
! ATAATATAGTTTGCAAGTGG+TGG - chr2_4:14203012-14203031 Msa0316910:three_prime_UTR 30.0%
ATTGAAAGCGAATTCGATTT+GGG + chr2_4:14203046-14203065 None:intergenic 30.0%
TACTTCCGTATAACAGTTAT+TGG - chr2_4:14203236-14203255 Msa0316910:CDS 30.0%
CGTATAACAGTTATTGGATT+TGG - chr2_4:14203242-14203261 Msa0316910:CDS 30.0%
! TTTTGATGCTTCATGAAACT+TGG - chr2_4:14203436-14203455 Msa0316910:intron 30.0%
AAATTAGTCCTCTACTTTGT+AGG - chr2_4:14203573-14203592 Msa0316910:intron 30.0%
TTTCAAAATGCTTCTGATGT+TGG - chr2_4:14203627-14203646 Msa0316910:intron 30.0%
CATGAAAGACAAACAAACTA+GGG - chr2_4:14203755-14203774 Msa0316910:intron 30.0%
! ATCGTATAAAGCATCAAGAA+GGG + chr2_4:14203797-14203816 None:intergenic 30.0%
! AATCGTATAAAGCATCAAGA+AGG + chr2_4:14203798-14203817 None:intergenic 30.0%
! TGTATATTGACTATCCCATT+AGG + chr2_4:14203845-14203864 None:intergenic 30.0%
ATATAAACTTCTCTCTCTAC+TGG + chr2_4:14203874-14203893 None:intergenic 30.0%
ATTCTATTAAACTGCCAAGT+TGG - chr2_4:14204122-14204141 Msa0316910:intron 30.0%
TAACAAGTGGGTAAAACATA+AGG + chr2_4:14204180-14204199 None:intergenic 30.0%
TTAGCCACAAACTTTCAATT+TGG - chr2_4:14204218-14204237 Msa0316910:intron 30.0%
! CATTTTTCACCTGATTCAAA+CGG - chr2_4:14204462-14204481 Msa0316910:intron 30.0%
! TATTTTGTGCAGTTCACTTT+TGG - chr2_4:14204575-14204594 Msa0316910:intron 30.0%
!! ATTTTGTGCAGTTCACTTTT+GGG - chr2_4:14204576-14204595 Msa0316910:intron 30.0%
! TTTTGCAAAATCAGCAACAT+TGG + chr2_4:14204632-14204651 None:intergenic 30.0%
CATTCCATAATTCATTCACT+TGG + chr2_4:14204787-14204806 None:intergenic 30.0%
ACCTTAAAAACCTTATGCTA+TGG - chr2_4:14205381-14205400 Msa0316910:intron 30.0%
! ACCATAGCATAAGGTTTTTA+AGG + chr2_4:14205385-14205404 None:intergenic 30.0%
TTAAAAACCTTATGCTATGG+TGG - chr2_4:14205384-14205403 Msa0316910:intron 30.0%
AAATGTTGCTGTGTTAATTG+AGG + chr2_4:14205439-14205458 None:intergenic 30.0%
! CTTTGGTTCACTTATCATAA+TGG - chr2_4:14205496-14205515 Msa0316910:intron 30.0%
!!! TTTCCTACTCTTATTTTCTC+CGG + chr2_4:14205522-14205541 None:intergenic 30.0%
GAAAATTGAGAACTACTACA+TGG - chr2_4:14205538-14205557 Msa0316910:intron 30.0%
AACTAACATGTCAAGGATTA+TGG + chr2_4:14205627-14205646 None:intergenic 30.0%
ACATTATGATTCAATGTGCA+TGG - chr2_4:14205797-14205816 Msa0316910:intron 30.0%
! ATCATCAACAACGTACTTTT+GGG + chr2_4:14205823-14205842 None:intergenic 30.0%
! TATCATCAACAACGTACTTT+TGG + chr2_4:14205824-14205843 None:intergenic 30.0%
!! GTGTTTGAGTTTCCAATTTT+TGG + chr2_4:14205870-14205889 None:intergenic 30.0%
! GTGATAGCCATGATATATTT+TGG - chr2_4:14206043-14206062 Msa0316910:intron 30.0%
!! ATAGCCATGATATATTTTGG+TGG - chr2_4:14206046-14206065 Msa0316910:intron 30.0%
AACACCACCAAAATATATCA+TGG + chr2_4:14206053-14206072 None:intergenic 30.0%
GATTGAAAGCGAATTCGATT+TGG + chr2_4:14203047-14203066 None:intergenic 35.0%
GAAAATTCGAAGTAACTCAC+TGG + chr2_4:14203156-14203175 None:intergenic 35.0%
!! CCTAGTTTGTTTGTCTTTCA+TGG + chr2_4:14203757-14203776 None:intergenic 35.0%
CCATGAAAGACAAACAAACT+AGG - chr2_4:14203754-14203773 Msa0316910:intron 35.0%
AAAGACAAACAAACTAGGGT+TGG - chr2_4:14203759-14203778 Msa0316910:intron 35.0%
AAGACAAACAAACTAGGGTT+GGG - chr2_4:14203760-14203779 Msa0316910:intron 35.0%
AAGTGTGTATGAGTGTATTC+TGG - chr2_4:14203819-14203838 Msa0316910:intron 35.0%
TGAGTGTATTCTGACCTAAT+TGG + chr2_4:14203908-14203927 None:intergenic 35.0%
TCTGATAGATGGATCATTCA+GGG + chr2_4:14204016-14204035 None:intergenic 35.0%
AATGATCCATCTATCAGACA+AGG - chr2_4:14204018-14204037 Msa0316910:intron 35.0%
GTTAAATATAGGGACCAACT+TGG + chr2_4:14204139-14204158 None:intergenic 35.0%
! TTACCCACTTGTTAGCAATT+TGG - chr2_4:14204186-14204205 Msa0316910:intron 35.0%
AGACCAAATTGCTAACAAGT+GGG + chr2_4:14204192-14204211 None:intergenic 35.0%
GGAACCAAATTGAAAGTTTG+TGG + chr2_4:14204225-14204244 None:intergenic 35.0%
TAATCTCGAGAACCTATTTG+AGG - chr2_4:14204331-14204350 Msa0316910:intron 35.0%
TCAACACTTGACAACAACAT+TGG + chr2_4:14204512-14204531 None:intergenic 35.0%
AGTGAACTGCACAAAATAAG+TGG + chr2_4:14204573-14204592 None:intergenic 35.0%
CTTTCCTATCCTCAACAAAT+AGG - chr2_4:14204664-14204683 Msa0316910:intron 35.0%
! CATACCTATTTGTTGAGGAT+AGG + chr2_4:14204671-14204690 None:intergenic 35.0%
ATGCCCAAGTGAATGAATTA+TGG - chr2_4:14204780-14204799 Msa0316910:CDS 35.0%
ACAGCTGTGTCAAAAAGAAA+AGG + chr2_4:14204888-14204907 None:intergenic 35.0%
CACATCACATATAGTGATGA+AGG + chr2_4:14205089-14205108 None:intergenic 35.0%
ATGTGATGTGTGCATAATTC+AGG - chr2_4:14205099-14205118 Msa0316910:intron 35.0%
TATATACTGAGAGAGCTGAT+TGG + chr2_4:14205338-14205357 None:intergenic 35.0%
TTTAACACCACCATAGCATA+AGG + chr2_4:14205394-14205413 None:intergenic 35.0%
TAGTTGCAACTAACATGTCA+AGG + chr2_4:14205634-14205653 None:intergenic 35.0%
TATATCATGGCTATCACACA+AGG + chr2_4:14206040-14206059 None:intergenic 35.0%
CAACATGAAAATTGCAATCC+AGG + chr2_4:14206240-14206259 None:intergenic 35.0%
GCAAAGAAGACTTACAACAA+GGG + chr2_4:14206372-14206391 None:intergenic 35.0%
TGCAAAGAAGACTTACAACA+AGG + chr2_4:14206373-14206392 None:intergenic 35.0%
CTTCAAAGCTTCAAGCTTTC+TGG - chr2_4:14203108-14203127 Msa0316910:three_prime_UTR 40.0%
!!! CGAAGTAACTCACTGGTTTT+GGG + chr2_4:14203149-14203168 None:intergenic 40.0%
!!! TCGAAGTAACTCACTGGTTT+TGG + chr2_4:14203150-14203169 None:intergenic 40.0%
GTGTGAAGTAGCATAATGTG+AGG - chr2_4:14203513-14203532 Msa0316910:intron 40.0%
AAACATGTACCTTGTATGCG+AGG - chr2_4:14203708-14203727 Msa0316910:CDS 40.0%
ATGAGTGTATTCTGGCCTAA+TGG - chr2_4:14203827-14203846 Msa0316910:intron 40.0%
TGAGTGTATTCTGGCCTAAT+GGG - chr2_4:14203828-14203847 Msa0316910:intron 40.0%
AAGCCATGAGAGACAAACTA+GGG + chr2_4:14203973-14203992 None:intergenic 40.0%
GTCTGATAGATGGATCATTC+AGG + chr2_4:14204017-14204036 None:intergenic 40.0%
TGTGTACCTTGTCTGATAGA+TGG + chr2_4:14204027-14204046 None:intergenic 40.0%
GAGACCAAATTGCTAACAAG+TGG + chr2_4:14204193-14204212 None:intergenic 40.0%
GAATTTGGATCCTGACTCTA+AGG - chr2_4:14204258-14204277 Msa0316910:intron 40.0%
TCATACTAGTCCTTAGAGTC+AGG + chr2_4:14204271-14204290 None:intergenic 40.0%
GAGTCAAATTTGACAGAGAC+TGG - chr2_4:14204289-14204308 Msa0316910:intron 40.0%
AAATTCATCCCTAACTCTGC+AGG + chr2_4:14204361-14204380 None:intergenic 40.0%
TGCAGAGTTAGGGATGAATT+TGG - chr2_4:14204360-14204379 Msa0316910:intron 40.0%
AGAGTTAGGGATGAATTTGG+TGG - chr2_4:14204363-14204382 Msa0316910:intron 40.0%
AAGAGACAACCGTTTGAATC+AGG + chr2_4:14204474-14204493 None:intergenic 40.0%
! TTGACAACAACATTGGTGAC+TGG + chr2_4:14204505-14204524 None:intergenic 40.0%
TTTGGGCACCTACATTTAAG+TGG - chr2_4:14204593-14204612 Msa0316910:intron 40.0%
TTGGGCACCTACATTTAAGT+GGG - chr2_4:14204594-14204613 Msa0316910:intron 40.0%
CTGATACCCCACTTAAATGT+AGG + chr2_4:14204604-14204623 None:intergenic 40.0%
! ATGCGCATACCTATTTGTTG+AGG + chr2_4:14204676-14204695 None:intergenic 40.0%
! CTGAATTCTTTGAAAGGAGC+AGG - chr2_4:14204756-14204775 Msa0316910:CDS 40.0%
TTACAGCTACTGGACTTATC+TGG - chr2_4:14204907-14204926 Msa0316910:intron 40.0%
AGTGGTCTGAAGATCATTTG+TGG - chr2_4:14205021-14205040 Msa0316910:intron 40.0%
AGATCACGCAAACAACAGTA+GGG + chr2_4:14205299-14205318 None:intergenic 40.0%
GGTTCACTTATCATAATGGC+CGG - chr2_4:14205500-14205519 Msa0316910:intron 40.0%
TTGCAACGTTCACAGCAAAA+AGG + chr2_4:14205683-14205702 None:intergenic 40.0%
!! TTTTGCTGTGAACGTTGCAA+TGG - chr2_4:14205683-14205702 Msa0316910:intron 40.0%
! ATTTGCGTGACAGTTGGTAT+AGG + chr2_4:14205719-14205738 None:intergenic 40.0%
!! TGAGTTTCCAATTTTTGGGC+CGG + chr2_4:14205865-14205884 None:intergenic 40.0%
!! ATCCTGAAGAGCATTGTAGA+AGG - chr2_4:14205967-14205986 Msa0316910:intron 40.0%
TAACTCGTTATCTACTTCCC+AGG - chr2_4:14206125-14206144 Msa0316910:intron 40.0%
TCTGACGAATAATCTTGCCT+GGG + chr2_4:14206145-14206164 None:intergenic 40.0%
GCAAGATTATTCGTCAGAGA+AGG - chr2_4:14206147-14206166 Msa0316910:intron 40.0%
! CAAAAGCACAGGTCTTAACT+TGG + chr2_4:14206403-14206422 None:intergenic 40.0%
! GTTAAGACCTGTGCTTTTGA+AGG - chr2_4:14206404-14206423 Msa0316910:five_prime_UTR 40.0%
!! GAGAGTGTCCTACAAAGTAG+AGG + chr2_4:14203584-14203603 None:intergenic 45.0%
CGATTGAGCTATCATGAGAG+AGG - chr2_4:14203731-14203750 Msa0316910:CDS 45.0%
CACACACTTTGATCGTACAG+AGG - chr2_4:14203926-14203945 Msa0316910:intron 45.0%
! CAACCCTAGTTTGTCTCTCA+TGG - chr2_4:14203967-14203986 Msa0316910:intron 45.0%
GAAGCCATGAGAGACAAACT+AGG + chr2_4:14203974-14203993 None:intergenic 45.0%
TCTGCAGGACATCCTCAAAT+AGG + chr2_4:14204346-14204365 None:intergenic 45.0%
TGGGCACCTACATTTAAGTG+GGG - chr2_4:14204595-14204614 Msa0316910:intron 45.0%
TGAGGATAGGAAAGCTTCTC+TGG + chr2_4:14204658-14204677 None:intergenic 45.0%
TTACGCTTTGCTTGCACTGA+AGG + chr2_4:14205048-14205067 None:intergenic 45.0%
CAGATCACGCAAACAACAGT+AGG + chr2_4:14205300-14205319 None:intergenic 45.0%
TGGCCGGAGAAAATAAGAGT+AGG - chr2_4:14205516-14205535 Msa0316910:intron 45.0%
ACCAACTGTCACGCAAATTG+CGG - chr2_4:14205721-14205740 Msa0316910:intron 45.0%
!! AGTTTCCAATTTTTGGGCCG+GGG + chr2_4:14205863-14205882 None:intergenic 45.0%
!! GAGTTTCCAATTTTTGGGCC+GGG + chr2_4:14205864-14205883 None:intergenic 45.0%
GTCCTTCTACAATGCTCTTC+AGG + chr2_4:14205972-14205991 None:intergenic 45.0%
CTCTGACGAATAATCTTGCC+TGG + chr2_4:14206146-14206165 None:intergenic 45.0%
!! TTAAATAAATAAATAAAAAG+GGG + chr2_4:14206335-14206354 None:intergenic 5.0%
!! GTTAAATAAATAAATAAAAA+GGG + chr2_4:14206336-14206355 None:intergenic 5.0%
!! TGTTAAATAAATAAATAAAA+AGG + chr2_4:14206337-14206356 None:intergenic 5.0%
!! GCTTTCTGGAATCATCCAGC+TGG - chr2_4:14203122-14203141 Msa0316910:three_prime_UTR 50.0%
TGAGGATGTCCTGCAGAGTT+AGG - chr2_4:14204349-14204368 Msa0316910:intron 50.0%
GAGGATGTCCTGCAGAGTTA+GGG - chr2_4:14204350-14204369 Msa0316910:intron 50.0%
GGATAGGAAAGCTTCTCTGG+TGG + chr2_4:14204655-14204674 None:intergenic 50.0%
GACACAGCTGTTACAGCTAC+TGG - chr2_4:14204897-14204916 Msa0316910:intron 50.0%
AACGTTGCAATGGCAGGAAC+TGG - chr2_4:14205693-14205712 Msa0316910:intron 50.0%
ACCGCAATTTGCGTGACAGT+TGG + chr2_4:14205725-14205744 None:intergenic 50.0%
CTGTCACGCAAATTGCGGTA+AGG - chr2_4:14205726-14205745 Msa0316910:intron 50.0%
! ATGTTAGTTTGGCCCTTCCC+CGG - chr2_4:14205843-14205862 Msa0316910:intron 50.0%
TGTACTTGGAGCTCGATACC+TGG - chr2_4:14206219-14206238 Msa0316910:intron 50.0%
GGATGAATTACGGCAGATGG+AGG + chr2_4:14206314-14206333 None:intergenic 50.0%
AGGGGATGAATTACGGCAGA+TGG + chr2_4:14206317-14206336 None:intergenic 50.0%
!!! TCACTGGTTTTGGGACCAGC+TGG + chr2_4:14203140-14203159 None:intergenic 55.0%
GCTCAATCGCCTCGCATACA+AGG + chr2_4:14203720-14203739 None:intergenic 55.0%
GCTGTGAACGTTGCAATGGC+AGG - chr2_4:14205687-14205706 Msa0316910:intron 55.0%
!! CCAATTTTTGGGCCGGGGAA+GGG + chr2_4:14205858-14205877 None:intergenic 55.0%
!! TCCAATTTTTGGGCCGGGGA+AGG + chr2_4:14205859-14205878 None:intergenic 55.0%
CCCTTCCCCGGCCCAAAAAT+TGG - chr2_4:14205855-14205874 Msa0316910:intron 60.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 14202989 14206432 14202989 ID=Msa0316910;Name=Msa0316910
chr2_4 mRNA 14202989 14206432 14202989 ID=Msa0316910-mRNA-1;Parent=Msa0316910;Name=Msa0316910-mRNA-1;_AED=0.29;_eAED=0.29;_QI=112|1|1|1|1|1|5|246|106
chr2_4 exon 14202989 14203274 14202989 ID=Msa0316910-mRNA-1:exon:5439;Parent=Msa0316910-mRNA-1
chr2_4 exon 14203679 14203752 14203679 ID=Msa0316910-mRNA-1:exon:5438;Parent=Msa0316910-mRNA-1
chr2_4 exon 14204465 14204517 14204465 ID=Msa0316910-mRNA-1:exon:5437;Parent=Msa0316910-mRNA-1
chr2_4 exon 14204736 14204834 14204736 ID=Msa0316910-mRNA-1:exon:5436;Parent=Msa0316910-mRNA-1
chr2_4 exon 14206266 14206432 14206266 ID=Msa0316910-mRNA-1:exon:5435;Parent=Msa0316910-mRNA-1
chr2_4 five_prime_UTR 14206321 14206432 14206321 ID=Msa0316910-mRNA-1:five_prime_utr;Parent=Msa0316910-mRNA-1
chr2_4 CDS 14206266 14206320 14206266 ID=Msa0316910-mRNA-1:cds;Parent=Msa0316910-mRNA-1
chr2_4 CDS 14204736 14204834 14204736 ID=Msa0316910-mRNA-1:cds;Parent=Msa0316910-mRNA-1
chr2_4 CDS 14204465 14204517 14204465 ID=Msa0316910-mRNA-1:cds;Parent=Msa0316910-mRNA-1
chr2_4 CDS 14203679 14203752 14203679 ID=Msa0316910-mRNA-1:cds;Parent=Msa0316910-mRNA-1
chr2_4 CDS 14203235 14203274 14203235 ID=Msa0316910-mRNA-1:cds;Parent=Msa0316910-mRNA-1
chr2_4 three_prime_UTR 14202989 14203234 14202989 ID=Msa0316910-mRNA-1:three_prime_utr;Parent=Msa0316910-mRNA-1
Gene Sequence

>Msa0316910

ATGGCGACTTCAAAGCTTCAAGCTTTCTGGAATCATCCAGCTGGTCCCAAAACCATTCACTTTTGGGCACCTACATTTAAGTGGGGTATCAGCATTGCCAATGTTGCTGATTTTGCAAAACCACCAGAGAAGCTTTCCTATCCTCAACAAATAGCTGTTACAGCTACTGGACTTATCTGGTCACGTTACAGCACAGTAATTACTCCAAAAAATTGGAACCTTTTTGCTGTGAACGTTGCAATGGCAGGAACTGGCCTATACCAACTGTCACGCAAATTGCGGCAAGATTATTCGTCAGAGAAGGCTATAGAAAAAGAATGA

Protein sequence

>Msa0316910

MATSKLQAFWNHPAGPKTIHFWAPTFKWGISIANVADFAKPPEKLSYPQQIAVTATGLIWSRYSTVITPKNWNLFAVNVAMAGTGLYQLSRKLRQDYSSEKAIEKE*