Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398790 | XP_003630218.2 | 95.738 | 305 | 11 | 1 | 1 | 305 | 1 | 303 | 0.0 | 587 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398790 | sp|Q9ASQ2|MAMYB_ARATH | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.57e-81 | 251 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398790 | A0A0C3Y601 | 95.738 | 305 | 11 | 1 | 1 | 305 | 1 | 303 | 0.0 | 587 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1398790 | TF | MYB-related |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0007850 | Msa1398790 | 0.811745 | 6.003093e-51 | -8.615850e-47 |
| Msa0012940 | Msa1398790 | 0.824132 | 9.525548e-54 | -8.615850e-47 |
| Msa0016540 | Msa1398790 | 0.816468 | 5.444694e-52 | -8.615850e-47 |
| Msa0029630 | Msa1398790 | 0.834486 | 2.915267e-56 | -8.615850e-47 |
| Msa0032020 | Msa1398790 | 0.802020 | 6.838087e-49 | -8.615850e-47 |
| Msa0033880 | Msa1398790 | 0.836080 | 1.153596e-56 | -8.615850e-47 |
| Msa0037410 | Msa1398790 | 0.805309 | 1.420366e-49 | -8.615850e-47 |
| Msa0041690 | Msa1398790 | 0.813236 | 2.834367e-51 | -8.615850e-47 |
| Msa0047640 | Msa1398790 | 0.805595 | 1.237247e-49 | -8.615850e-47 |
| Msa0077900 | Msa1398790 | 0.811123 | 8.194093e-51 | -8.615850e-47 |
| Msa0079920 | Msa1398790 | 0.818290 | 2.117189e-52 | -8.615850e-47 |
| Msa0093850 | Msa1398790 | 0.807292 | 5.428686e-50 | -8.615850e-47 |
| Msa0106620 | Msa1398790 | 0.800191 | 1.618159e-48 | -8.615850e-47 |
| Msa0119900 | Msa1398790 | 0.801562 | 8.490251e-49 | -8.615850e-47 |
| Msa1351540 | Msa1398790 | 0.820722 | 5.903902e-53 | -8.615850e-47 |
| Msa1356610 | Msa1398790 | 0.828893 | 6.979876e-55 | -8.615850e-47 |
| Msa1364160 | Msa1398790 | 0.818797 | 1.625062e-52 | -8.615850e-47 |
| Msa1373170 | Msa1398790 | 0.808516 | 2.980691e-50 | -8.615850e-47 |
| Msa1373820 | Msa1398790 | 0.818682 | 1.725399e-52 | -8.615850e-47 |
| Msa1374170 | Msa1398790 | 0.817638 | 2.972228e-52 | -8.615850e-47 |
| Msa1382670 | Msa1398790 | 0.818505 | 1.893082e-52 | -8.615850e-47 |
| Msa1391480 | Msa1398790 | 0.996321 | 4.636112e-226 | -8.615850e-47 |
| Msa1398790 | Msa1403570 | 0.824607 | 7.365969e-54 | -8.615850e-47 |
| Msa1398790 | Msa1409950 | 0.803425 | 3.507936e-49 | -8.615850e-47 |
| Msa1398790 | Msa1411500 | 0.806691 | 7.274293e-50 | -8.615850e-47 |
| Msa1398790 | Msa1411950 | 0.832075 | 1.162287e-55 | -8.615850e-47 |
| Msa1398790 | Msa1418240 | 0.804981 | 1.664176e-49 | -8.615850e-47 |
| Msa1398790 | Msa1418500 | 0.823346 | 1.455361e-53 | -8.615850e-47 |
| Msa1398790 | Msa1421560 | 0.825852 | 3.738525e-54 | -8.615850e-47 |
| Msa1398790 | Msa1427160 | 0.811623 | 6.381863e-51 | -8.615850e-47 |
| Msa1398790 | Msa1432480 | 0.817558 | 3.099228e-52 | -8.615850e-47 |
| Msa1398790 | Msa1433870 | 0.806905 | 6.553556e-50 | -8.615850e-47 |
| Msa1398790 | Msa1435440 | 0.811374 | 7.229828e-51 | -8.615850e-47 |
| Msa1398790 | Msa1450720 | 0.822521 | 2.265776e-53 | -8.615850e-47 |
| Msa1398790 | Msa1454680 | 0.800025 | 1.749140e-48 | -8.615850e-47 |
| Msa1398790 | Msa1459910 | 0.818656 | 1.749410e-52 | -8.615850e-47 |
| Msa1398790 | Msa1459960 | 0.848319 | 6.610203e-60 | -8.615850e-47 |
| Msa1398790 | Msa1462910 | 0.834507 | 2.879389e-56 | -8.615850e-47 |
| Msa0610090 | Msa1398790 | 0.844650 | 6.628239e-59 | -8.615850e-47 |
| Msa0615580 | Msa1398790 | 0.817643 | 2.964464e-52 | -8.615850e-47 |
| Msa0619420 | Msa1398790 | 0.801601 | 8.336162e-49 | -8.615850e-47 |
| Msa0619860 | Msa1398790 | 0.802644 | 5.086566e-49 | -8.615850e-47 |
| Msa0628420 | Msa1398790 | 0.810826 | 9.503384e-51 | -8.615850e-47 |
| Msa0633570 | Msa1398790 | 0.848968 | 4.368556e-60 | -8.615850e-47 |
| Msa0644030 | Msa1398790 | 0.859628 | 3.625145e-63 | -8.615850e-47 |
| Msa0656810 | Msa1398790 | 0.848810 | 4.834957e-60 | -8.615850e-47 |
| Msa0658480 | Msa1398790 | 0.851616 | 7.904796e-61 | -8.615850e-47 |
| Msa0659550 | Msa1398790 | 0.818062 | 2.384151e-52 | -8.615850e-47 |
| Msa0662630 | Msa1398790 | 0.800668 | 1.293638e-48 | -8.615850e-47 |
| Msa0662890 | Msa1398790 | 0.807755 | 4.329854e-50 | -8.615850e-47 |
| Msa0666230 | Msa1398790 | 0.819642 | 1.043375e-52 | -8.615850e-47 |
| Msa0669180 | Msa1398790 | 0.801230 | 9.931731e-49 | -8.615850e-47 |
| Msa0687230 | Msa1398790 | 0.804977 | 1.667206e-49 | -8.615850e-47 |
| Msa0689440 | Msa1398790 | 0.800404 | 1.464523e-48 | -8.615850e-47 |
| Msa0698100 | Msa1398790 | 0.806022 | 1.006356e-49 | -8.615850e-47 |
| Msa0712560 | Msa1398790 | 0.807811 | 4.212669e-50 | -8.615850e-47 |
| Msa0743530 | Msa1398790 | 0.806787 | 6.943374e-50 | -8.615850e-47 |
| Msa0744100 | Msa1398790 | 0.814851 | 1.248096e-51 | -8.615850e-47 |
| Msa0785130 | Msa1398790 | 0.804360 | 2.242828e-49 | -8.615850e-47 |
| Msa0794050 | Msa1398790 | 0.801816 | 7.533234e-49 | -8.615850e-47 |
| Msa0818770 | Msa1398790 | 0.812990 | 3.210780e-51 | -8.615850e-47 |
| Msa0819540 | Msa1398790 | 0.801036 | 1.088160e-48 | -8.615850e-47 |
| Msa0822170 | Msa1398790 | 0.815835 | 7.542783e-52 | -8.615850e-47 |
| Msa0822180 | Msa1398790 | 0.806270 | 8.923176e-50 | -8.615850e-47 |
| Msa0825270 | Msa1398790 | 0.829250 | 5.716835e-55 | -8.615850e-47 |
| Msa0826510 | Msa1398790 | 0.821975 | 3.034242e-53 | -8.615850e-47 |
| Msa0831100 | Msa1398790 | 0.803055 | 4.184302e-49 | -8.615850e-47 |
| Msa0833190 | Msa1398790 | -0.804059 | 2.590928e-49 | -8.615850e-47 |
| Msa0123510 | Msa1398790 | 0.812848 | 3.447624e-51 | -8.615850e-47 |
| Msa0125450 | Msa1398790 | 0.822969 | 1.781775e-53 | -8.615850e-47 |
| Msa0125540 | Msa1398790 | 0.802696 | 4.963299e-49 | -8.615850e-47 |
| Msa0127040 | Msa1398790 | 0.809847 | 1.545364e-50 | -8.615850e-47 |
| Msa0127850 | Msa1398790 | 0.838588 | 2.630451e-57 | -8.615850e-47 |
| Msa0136120 | Msa1398790 | 0.811929 | 5.474481e-51 | -8.615850e-47 |
| Msa0138360 | Msa1398790 | 0.806228 | 9.110444e-50 | -8.615850e-47 |
| Msa0142110 | Msa1398790 | 0.830313 | 3.150123e-55 | -8.615850e-47 |
| Msa0142410 | Msa1398790 | 0.995307 | 5.534937e-215 | -8.615850e-47 |
| Msa0144430 | Msa1398790 | 0.810535 | 1.098453e-50 | -8.615850e-47 |
| Msa0146080 | Msa1398790 | 0.809325 | 2.001279e-50 | -8.615850e-47 |
| Msa0147980 | Msa1398790 | 0.821789 | 3.348971e-53 | -8.615850e-47 |
| Msa0152870 | Msa1398790 | 0.801264 | 9.773850e-49 | -8.615850e-47 |
| Msa0166750 | Msa1398790 | 0.803600 | 3.226098e-49 | -8.615850e-47 |
| Msa0168090 | Msa1398790 | 0.851882 | 6.645184e-61 | -8.615850e-47 |
| Msa0169610 | Msa1398790 | 0.817069 | 3.992324e-52 | -8.615850e-47 |
| Msa0174000 | Msa1398790 | 0.837526 | 4.934013e-57 | -8.615850e-47 |
| Msa0178120 | Msa1398790 | 0.823219 | 1.558403e-53 | -8.615850e-47 |
| Msa0179030 | Msa1398790 | 0.822550 | 2.230606e-53 | -8.615850e-47 |
| Msa0199420 | Msa1398790 | 0.816588 | 5.119328e-52 | -8.615850e-47 |
| Msa0209140 | Msa1398790 | 0.815665 | 8.229912e-52 | -8.615850e-47 |
| Msa0223170 | Msa1398790 | 0.825833 | 3.777329e-54 | -8.615850e-47 |
| Msa0230520 | Msa1398790 | 0.811443 | 6.982813e-51 | -8.615850e-47 |
| Msa0231100 | Msa1398790 | 0.806979 | 6.321640e-50 | -8.615850e-47 |
| Msa0236620 | Msa1398790 | 0.822312 | 2.534130e-53 | -8.615850e-47 |
| Msa1226610 | Msa1398790 | 0.812630 | 3.848339e-51 | -8.615850e-47 |
| Msa1255410 | Msa1398790 | 0.806465 | 8.117484e-50 | -8.615850e-47 |
| Msa1262890 | Msa1398790 | 0.811811 | 5.809277e-51 | -8.615850e-47 |
| Msa1276970 | Msa1398790 | 0.819782 | 9.694166e-53 | -8.615850e-47 |
| Msa1292020 | Msa1398790 | 0.807076 | 6.029882e-50 | -8.615850e-47 |
| Msa1298100 | Msa1398790 | 0.834635 | 2.675054e-56 | -8.615850e-47 |
| Msa1331250 | Msa1398790 | 0.832046 | 1.181806e-55 | -8.615850e-47 |
| Msa1344310 | Msa1398790 | 0.824632 | 7.266024e-54 | -8.615850e-47 |
| Msa0376280 | Msa1398790 | 0.804806 | 1.810447e-49 | -8.615850e-47 |
| Msa0384670 | Msa1398790 | 0.839274 | 1.747308e-57 | -8.615850e-47 |
| Msa0419720 | Msa1398790 | 0.802212 | 6.245361e-49 | -8.615850e-47 |
| Msa0434570 | Msa1398790 | 0.837614 | 4.683733e-57 | -8.615850e-47 |
| Msa0434770 | Msa1398790 | 0.840635 | 7.723708e-58 | -8.615850e-47 |
| Msa0436200 | Msa1398790 | 0.800171 | 1.633505e-48 | -8.615850e-47 |
| Msa0443390 | Msa1398790 | 0.817058 | 4.015806e-52 | -8.615850e-47 |
| Msa0451150 | Msa1398790 | 0.800396 | 1.469566e-48 | -8.615850e-47 |
| Msa0478580 | Msa1398790 | 0.835006 | 2.156448e-56 | -8.615850e-47 |
| Msa0992550 | Msa1398790 | 0.810442 | 1.150560e-50 | -8.615850e-47 |
| Msa1027250 | Msa1398790 | 0.809828 | 1.559893e-50 | -8.615850e-47 |
| Msa1027300 | Msa1398790 | 0.806265 | 8.945009e-50 | -8.615850e-47 |
| Msa1030080 | Msa1398790 | 0.809325 | 2.001177e-50 | -8.615850e-47 |
| Msa1042480 | Msa1398790 | 0.818264 | 2.146164e-52 | -8.615850e-47 |
| Msa1056900 | Msa1398790 | 0.815189 | 1.050371e-51 | -8.615850e-47 |
| Msa1070390 | Msa1398790 | 0.805091 | 1.577674e-49 | -8.615850e-47 |
| Msa1072600 | Msa1398790 | 0.807696 | 4.455666e-50 | -8.615850e-47 |
| Msa1072710 | Msa1398790 | 0.807171 | 5.758504e-50 | -8.615850e-47 |
| Msa1089270 | Msa1398790 | 0.815151 | 1.070866e-51 | -8.615850e-47 |
| Msa0241830 | Msa1398790 | 0.861120 | 1.282667e-63 | -8.615850e-47 |
| Msa0244970 | Msa1398790 | 0.833312 | 5.732593e-56 | -8.615850e-47 |
| Msa0244980 | Msa1398790 | 0.850219 | 1.955974e-60 | -8.615850e-47 |
| Msa0245430 | Msa1398790 | 0.813158 | 2.948461e-51 | -8.615850e-47 |
| Msa0245580 | Msa1398790 | 0.852306 | 5.033679e-61 | -8.615850e-47 |
| Msa0249580 | Msa1398790 | 0.810205 | 1.294421e-50 | -8.615850e-47 |
| Msa0261170 | Msa1398790 | 0.825726 | 4.004859e-54 | -8.615850e-47 |
| Msa0262480 | Msa1398790 | 0.838677 | 2.494208e-57 | -8.615850e-47 |
| Msa0270210 | Msa1398790 | 0.836357 | 9.809491e-57 | -8.615850e-47 |
| Msa0275360 | Msa1398790 | 0.805564 | 1.256175e-49 | -8.615850e-47 |
| Msa0279850 | Msa1398790 | 0.832689 | 8.192125e-56 | -8.615850e-47 |
| Msa0283420 | Msa1398790 | 0.822820 | 1.930951e-53 | -8.615850e-47 |
| Msa0295250 | Msa1398790 | 0.814964 | 1.177905e-51 | -8.615850e-47 |
| Msa0296250 | Msa1398790 | 0.856437 | 3.219276e-62 | -8.615850e-47 |
| Msa0296790 | Msa1398790 | 0.800251 | 1.572973e-48 | -8.615850e-47 |
| Msa0300280 | Msa1398790 | 0.819056 | 1.419086e-52 | -8.615850e-47 |
| Msa0300350 | Msa1398790 | 0.823270 | 1.515733e-53 | -8.615850e-47 |
| Msa0301520 | Msa1398790 | 0.823485 | 1.350787e-53 | -8.615850e-47 |
| Msa0305310 | Msa1398790 | 0.802493 | 5.465420e-49 | -8.615850e-47 |
| Msa0320590 | Msa1398790 | 0.812379 | 4.367877e-51 | -8.615850e-47 |
| Msa0321690 | Msa1398790 | 0.820909 | 5.346171e-53 | -8.615850e-47 |
| Msa0322900 | Msa1398790 | 0.853281 | 2.651013e-61 | -8.615850e-47 |
| Msa0332640 | Msa1398790 | 0.818920 | 1.523450e-52 | -8.615850e-47 |
| Msa0363060 | Msa1398790 | 0.839883 | 1.214003e-57 | -8.615850e-47 |
| Msa1123350 | Msa1398790 | 0.873766 | 1.140122e-67 | -8.615850e-47 |
| Msa1126830 | Msa1398790 | 0.823827 | 1.123023e-53 | -8.615850e-47 |
| Msa1127540 | Msa1398790 | 0.851121 | 1.090988e-60 | -8.615850e-47 |
| Msa1127590 | Msa1398790 | 0.831956 | 1.244161e-55 | -8.615850e-47 |
| Msa1131560 | Msa1398790 | 0.809566 | 1.775848e-50 | -8.615850e-47 |
| Msa1145240 | Msa1398790 | 0.805042 | 1.615448e-49 | -8.615850e-47 |
| Msa1165780 | Msa1398790 | 0.850394 | 1.746866e-60 | -8.615850e-47 |
| Msa1166870 | Msa1398790 | 0.800419 | 1.454350e-48 | -8.615850e-47 |
| Msa1201810 | Msa1398790 | 0.805082 | 1.585148e-49 | -8.615850e-47 |
| Msa1201830 | Msa1398790 | 0.814552 | 1.453965e-51 | -8.615850e-47 |
| Msa1202580 | Msa1398790 | 0.820542 | 6.493343e-53 | -8.615850e-47 |
| Msa1205480 | Msa1398790 | 0.803282 | 3.755901e-49 | -8.615850e-47 |
| Msa1206650 | Msa1398790 | 0.843525 | 1.328127e-58 | -8.615850e-47 |
| Msa1208020 | Msa1398790 | 0.816591 | 5.109911e-52 | -8.615850e-47 |
| Msa1211830 | Msa1398790 | 0.806269 | 8.928629e-50 | -8.615850e-47 |
| Msa1214320 | Msa1398790 | 0.804005 | 2.658994e-49 | -8.615850e-47 |
| Msa0485240 | Msa1398790 | 0.811948 | 5.422850e-51 | -8.615850e-47 |
| Msa0491000 | Msa1398790 | 0.810605 | 1.060577e-50 | -8.615850e-47 |
| Msa0511770 | Msa1398790 | 0.827365 | 1.628999e-54 | -8.615850e-47 |
| Msa0518030 | Msa1398790 | 0.821714 | 3.486515e-53 | -8.615850e-47 |
| Msa0519150 | Msa1398790 | 0.804875 | 1.751110e-49 | -8.615850e-47 |
| Msa0531250 | Msa1398790 | 0.816899 | 4.359254e-52 | -8.615850e-47 |
| Msa0534750 | Msa1398790 | 0.818822 | 1.603795e-52 | -8.615850e-47 |
| Msa0547990 | Msa1398790 | 0.857470 | 1.597261e-62 | -8.615850e-47 |
| Msa0550540 | Msa1398790 | 0.800783 | 1.225749e-48 | -8.615850e-47 |
| Msa0550570 | Msa1398790 | 0.808264 | 3.372807e-50 | -8.615850e-47 |
| Msa0560500 | Msa1398790 | 0.800521 | 1.386220e-48 | -8.615850e-47 |
| Msa0581110 | Msa1398790 | 0.822254 | 2.613525e-53 | -8.615850e-47 |
| Msa0593700 | Msa1398790 | 0.850480 | 1.652779e-60 | -8.615850e-47 |
| Msa0597770 | Msa1398790 | 0.806737 | 7.114716e-50 | -8.615850e-47 |
| Msa0864420 | Msa1398790 | 0.810624 | 1.050653e-50 | -8.615850e-47 |
| Msa0865620 | Msa1398790 | 0.817957 | 2.518605e-52 | -8.615850e-47 |
| Msa0870650 | Msa1398790 | 0.817513 | 3.171547e-52 | -8.615850e-47 |
| Msa0892640 | Msa1398790 | 0.804672 | 1.930463e-49 | -8.615850e-47 |
| Msa0903780 | Msa1398790 | 0.811148 | 8.093216e-51 | -8.615850e-47 |
| Msa0913240 | Msa1398790 | 0.823306 | 1.487257e-53 | -8.615850e-47 |
| Msa0928120 | Msa1398790 | 0.806316 | 8.729038e-50 | -8.615850e-47 |
| Msa0943170 | Msa1398790 | 0.825662 | 4.147824e-54 | -8.615850e-47 |
| Msa0963020 | Msa1398790 | 0.816905 | 4.344510e-52 | -8.615850e-47 |
| Msa0973320 | Msa1398790 | 0.814575 | 1.436628e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398790 | MtrunA17_Chr8g0383991 | 95.738 | 305 | 11 | 1 | 1 | 305 | 1 | 303 | 0.0 | 587 |
| Msa1398790 | MtrunA17_Chr3g0142891 | 30.660 | 212 | 93 | 3 | 139 | 302 | 52 | 257 | 6.82e-23 | 95.1 |
| Msa1398790 | MtrunA17_Chr3g0142871 | 30.702 | 228 | 98 | 4 | 132 | 302 | 428 | 652 | 1.07e-22 | 98.2 |
| Msa1398790 | MtrunA17_Chr7g0269901 | 31.140 | 228 | 97 | 4 | 132 | 302 | 428 | 652 | 1.47e-22 | 97.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1398790 | AT5G45420.2 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.59e-82 | 251 |
| Msa1398790 | AT5G45420.1 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.59e-82 | 251 |
| Msa1398790 | AT5G45420.3 | 51.553 | 322 | 119 | 10 | 1 | 301 | 1 | 306 | 1.59e-82 | 251 |
| Msa1398790 | AT3G11450.1 | 34.615 | 182 | 80 | 3 | 159 | 302 | 466 | 646 | 6.90e-22 | 96.3 |
| Msa1398790 | AT5G06110.1 | 30.732 | 205 | 97 | 4 | 140 | 300 | 457 | 660 | 7.68e-19 | 87.4 |
| Msa1398790 | AT5G06110.2 | 30.732 | 205 | 97 | 4 | 140 | 300 | 457 | 660 | 7.68e-19 | 87.4 |
Find 96 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAACGATTTCGTTGGTTTC+TGG | 0.174909 | tig0022299:+59032 | None:intergenic |
| AAAGTTGCTGCTGCTGTTCC+TGG | 0.293700 | tig0022299:-58299 | Msa1398790:CDS |
| TCGGTTGAGGTTTCCTGATC+GGG | 0.354119 | tig0022299:+58830 | None:intergenic |
| GTGAGAAAGTTGAAAGTGTT+TGG | 0.354834 | tig0022299:-58394 | Msa1398790:CDS |
| CAGAATTGAAGAAAGGGTTT+CGG | 0.376978 | tig0022299:-58244 | Msa1398790:CDS |
| TGCATTGTCGGCGGCGGTGG+TGG | 0.384974 | tig0022299:-58678 | Msa1398790:CDS |
| GGGTTTCGGACTGCAAAATC+TGG | 0.390024 | tig0022299:-58230 | Msa1398790:CDS |
| TTTGCATTCTCTCTCCTCCT+TGG | 0.398248 | tig0022299:-58920 | Msa1398790:CDS |
| TTCGCTCCAATCTCCATTAC+CGG | 0.403852 | tig0022299:-58893 | Msa1398790:CDS |
| TTGAAGAATCGAAATGGAAA+TGG | 0.409406 | tig0022299:-58710 | Msa1398790:CDS |
| ATCGTCCGATCTGCGTTGCT+TGG | 0.410728 | tig0022299:+58769 | None:intergenic |
| CATCTCATAGCAACATCTTT+CGG | 0.412166 | tig0022299:+58326 | None:intergenic |
| AAAGGAGTTGGGAGAGAAGA+AGG | 0.421544 | tig0022299:-58507 | Msa1398790:CDS |
| AGAGAAGAAGGTTGATGATT+CGG | 0.423910 | tig0022299:-58495 | Msa1398790:CDS |
| GATAAGAGACTTGTTGAAGA+AGG | 0.424391 | tig0022299:-58434 | Msa1398790:CDS |
| GTCGGCGGCGGTGGTGGAGG+AGG | 0.424999 | tig0022299:-58672 | Msa1398790:CDS |
| TGTTGCATTGTCGGCGGCGG+TGG | 0.428265 | tig0022299:-58681 | Msa1398790:CDS |
| CGGGTGCACCGGACTGATAC+AGG | 0.433545 | tig0022299:+59077 | None:intergenic |
| ATTGTCGGCGGCGGTGGTGG+AGG | 0.433697 | tig0022299:-58675 | Msa1398790:CDS |
| TGGAAACGGTGTTGCATTGT+CGG | 0.435353 | tig0022299:-58690 | Msa1398790:CDS |
| ACGGGAATCGCCGCCGGTAA+TGG | 0.437783 | tig0022299:+58880 | None:intergenic |
| TGCCGTCAATTTCCCCGATC+AGG | 0.438106 | tig0022299:-58843 | Msa1398790:CDS |
| GGCGGCGGTGGTGGAGGAGG+AGG | 0.446195 | tig0022299:-58669 | Msa1398790:CDS |
| TCGCCGCCGGTAATGGAGAT+TGG | 0.447359 | tig0022299:+58887 | None:intergenic |
| AGAATTGCAGAATTGAAGAA+AGG | 0.450045 | tig0022299:-58251 | Msa1398790:CDS |
| ATCGGTTGAGGTTTCCTGAT+CGG | 0.454293 | tig0022299:+58829 | None:intergenic |
| GAGGCGATAGCGGAGGCATT+CGG | 0.458797 | tig0022299:-58566 | Msa1398790:CDS |
| GATTTCGTTGGTTTCTGGTA+AGG | 0.461575 | tig0022299:+59037 | None:intergenic |
| TTCAGTGGCCGCGGGTGCAC+CGG | 0.461986 | tig0022299:+59066 | None:intergenic |
| CGAAAGATGTTGCTATGAGA+TGG | 0.463082 | tig0022299:-58325 | Msa1398790:CDS |
| TGGAGGAGGAGGAGAAGGAA+TGG | 0.463216 | tig0022299:-58658 | Msa1398790:CDS |
| GTTTCGTTGAAGAATCGAAA+TGG | 0.464225 | tig0022299:-58716 | Msa1398790:CDS |
| CAACCGATGAGGATGATTCC+AGG | 0.465520 | tig0022299:-58814 | Msa1398790:CDS |
| GGCGATTCCCGTGTCGGCCG+TGG | 0.468929 | tig0022299:-58869 | Msa1398790:CDS |
| GGAATCATCCTCATCGGTTG+AGG | 0.470477 | tig0022299:+58817 | None:intergenic |
| TCGATTTGAGCGGTTCAGAT+TGG | 0.470526 | tig0022299:+58954 | None:intergenic |
| AGGCTGTGATTCAGTGGCCG+CGG | 0.476901 | tig0022299:+59057 | None:intergenic |
| CGGCATGACCACGGCCGACA+CGG | 0.478990 | tig0022299:+58861 | None:intergenic |
| TTCAACGAAACCACCGGCGC+TGG | 0.480043 | tig0022299:+58728 | None:intergenic |
| GGCATGACCACGGCCGACAC+GGG | 0.485981 | tig0022299:+58862 | None:intergenic |
| GGTGGTGGAGGAGGAGGAGA+AGG | 0.492408 | tig0022299:-58663 | Msa1398790:CDS |
| AAGAGACTTGTTGAAGAAGG+AGG | 0.496476 | tig0022299:-58431 | Msa1398790:CDS |
| TCCCACCGTCCTGGTTTCCC+CGG | 0.499822 | tig0022299:+58587 | None:intergenic |
| GAAGATTGAAGAGATTGAAA+CGG | 0.500067 | tig0022299:+59000 | None:intergenic |
| GGCTGTGATTCAGTGGCCGC+GGG | 0.502205 | tig0022299:+59058 | None:intergenic |
| GAATTGCAGAATTGAAGAAA+GGG | 0.503367 | tig0022299:-58250 | Msa1398790:CDS |
| CAAGCTGCTTTCGATTTCCC+AGG | 0.506123 | tig0022299:+58281 | None:intergenic |
| CACCGTCCTGGTTTCCCCGG+TGG | 0.513685 | tig0022299:+58590 | None:intergenic |
| GCCGACACGGGAATCGCCGC+CGG | 0.516860 | tig0022299:+58874 | None:intergenic |
| GGTGAAGAAATCAAAGGAGT+TGG | 0.518193 | tig0022299:-58519 | Msa1398790:CDS |
| CGGTGTTGCATTGTCGGCGG+CGG | 0.518420 | tig0022299:-58684 | Msa1398790:CDS |
| GTGAAGAAATCAAAGGAGTT+GGG | 0.518866 | tig0022299:-58518 | Msa1398790:CDS |
| CGATTCTTCAACGAAACCAC+CGG | 0.522401 | tig0022299:+58722 | None:intergenic |
| GAAGGAGGAGATTTAGCGAC+GGG | 0.533839 | tig0022299:-58416 | Msa1398790:CDS |
| TCTGAAGAAGAGAAAAGCGT+TGG | 0.535242 | tig0022299:-58456 | Msa1398790:CDS |
| GCTATCGCCTCCCACCGTCC+TGG | 0.536007 | tig0022299:+58578 | None:intergenic |
| CTCTGTAGTAGCTCCAGCGC+CGG | 0.539400 | tig0022299:-58741 | Msa1398790:CDS |
| AATCGAAATGGAAATGGAAA+CGG | 0.539438 | tig0022299:-58704 | Msa1398790:CDS |
| ACCGGCGGCGATTCCCGTGT+CGG | 0.539977 | tig0022299:-58875 | Msa1398790:CDS |
| TTTCCTGGAATCATCCTCAT+CGG | 0.539989 | tig0022299:+58811 | None:intergenic |
| AGGACGGTGGGAGGCGATAG+CGG | 0.545275 | tig0022299:-58576 | Msa1398790:CDS |
| GGGGAAACCAGGACGGTGGG+AGG | 0.546154 | tig0022299:-58585 | Msa1398790:CDS |
| CAGATCCAAGCAACGCAGAT+CGG | 0.552256 | tig0022299:-58774 | Msa1398790:CDS |
| AAGTTGCTGCTGCTGTTCCT+GGG | 0.554829 | tig0022299:-58298 | Msa1398790:CDS |
| ACCGGGGAAACCAGGACGGT+GGG | 0.559178 | tig0022299:-58588 | Msa1398790:CDS |
| CCGAAGTTCCTGTATCAGTC+CGG | 0.563162 | tig0022299:-59085 | Msa1398790:CDS |
| GGCATTCGGAGGGCGTCACA+AGG | 0.566101 | tig0022299:-58552 | Msa1398790:CDS |
| GAAAGATGTTGCTATGAGAT+GGG | 0.567305 | tig0022299:-58324 | Msa1398790:CDS |
| CTGGTAAGGCTGTGATTCAG+TGG | 0.573589 | tig0022299:+59051 | None:intergenic |
| CCGGACTGATACAGGAACTT+CGG | 0.574834 | tig0022299:+59085 | None:intergenic |
| TGTAGTAGCTCCAGCGCCGG+TGG | 0.575392 | tig0022299:-58738 | Msa1398790:CDS |
| CACCGGGGAAACCAGGACGG+TGG | 0.578167 | tig0022299:-58589 | Msa1398790:CDS |
| TTCCTGATCGGGGAAATTGA+CGG | 0.583685 | tig0022299:+58841 | None:intergenic |
| GCGATAGCGGAGGCATTCGG+AGG | 0.585439 | tig0022299:-58563 | Msa1398790:CDS |
| GGAAATTGACGGCATGACCA+CGG | 0.588936 | tig0022299:+58852 | None:intergenic |
| GTATCAGTCCGGTGCACCCG+CGG | 0.599158 | tig0022299:-59074 | Msa1398790:CDS |
| GCGTCACAAGGTGGAAAGCG+TGG | 0.605173 | tig0022299:-58540 | Msa1398790:CDS |
| GTAATGGAGATTGGAGCGAA+AGG | 0.608208 | tig0022299:+58896 | None:intergenic |
| ACAGCGATGAACGATTTCGT+TGG | 0.617295 | tig0022299:+59025 | None:intergenic |
| TGAGATTCTGAAGAAACAGA+TGG | 0.629866 | tig0022299:-58621 | Msa1398790:CDS |
| CGGTTGAGGTTTCCTGATCG+GGG | 0.631525 | tig0022299:+58831 | None:intergenic |
| ATCCACCGGGGAAACCAGGA+CGG | 0.634948 | tig0022299:-58592 | Msa1398790:CDS |
| AAGTGTTTGGAGTTCAAACG+AGG | 0.645478 | tig0022299:-58381 | Msa1398790:CDS |
| AGAAGGAGGAGATTTAGCGA+CGG | 0.648578 | tig0022299:-58417 | Msa1398790:CDS |
| CGGCGCTGGAGCTACTACAG+AGG | 0.650195 | tig0022299:+58742 | None:intergenic |
| CGATAGCGGAGGCATTCGGA+GGG | 0.653736 | tig0022299:-58562 | Msa1398790:CDS |
| GCTCCAATCTCCATTACCGG+CGG | 0.663325 | tig0022299:-58890 | Msa1398790:CDS |
| ACGGTGGGAGGCGATAGCGG+AGG | 0.665574 | tig0022299:-58573 | Msa1398790:CDS |
| AAGCGTGGTGAAGAAATCAA+AGG | 0.666488 | tig0022299:-58525 | Msa1398790:CDS |
| AAACGGTGTTGCATTGTCGG+CGG | 0.669146 | tig0022299:-58687 | Msa1398790:CDS |
| TCAGGAAACCTCAACCGATG+AGG | 0.671357 | tig0022299:-58825 | Msa1398790:CDS |
| AGATTGGAGCGAAAGGACCA+AGG | 0.675323 | tig0022299:+58903 | None:intergenic |
| ATTCGGAGGGCGTCACAAGG+TGG | 0.679939 | tig0022299:-58549 | Msa1398790:CDS |
| CAGATGAAAATCGATTTGAG+CGG | 0.706129 | tig0022299:+58944 | None:intergenic |
| TTGGAGCGAAAGGACCAAGG+AGG | 0.738797 | tig0022299:+58906 | None:intergenic |
| GGAGAAGGAATGGAACGACG+AGG | 0.745135 | tig0022299:-58648 | Msa1398790:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| GAAGATTGAAGAGATTGAAA+CGG | + | tig0022299:58332-58351 | None:intergenic | 30.0% | |
| TTGAAGAATCGAAATGGAAA+TGG | - | tig0022299:58619-58638 | Msa1398790:CDS | 30.0% | |
| AATCGAAATGGAAATGGAAA+CGG | - | tig0022299:58625-58644 | Msa1398790:CDS | 30.0% | |
| AGAATTGCAGAATTGAAGAA+AGG | - | tig0022299:59078-59097 | Msa1398790:CDS | 30.0% | |
| GAATTGCAGAATTGAAGAAA+GGG | - | tig0022299:59079-59098 | Msa1398790:CDS | 30.0% | |
| GAAGATTGAAGAGATTGAAA+CGG | + | tig0022299:58332-58351 | None:intergenic | 30.0% | |
| TTGAAGAATCGAAATGGAAA+TGG | - | tig0022299:58619-58638 | Msa1398790:CDS | 30.0% | |
| AATCGAAATGGAAATGGAAA+CGG | - | tig0022299:58625-58644 | Msa1398790:CDS | 30.0% | |
| AGAATTGCAGAATTGAAGAA+AGG | - | tig0022299:59078-59097 | Msa1398790:CDS | 30.0% | |
| GAATTGCAGAATTGAAGAAA+GGG | - | tig0022299:59079-59098 | Msa1398790:CDS | 30.0% | |
| !! | CAGATGAAAATCGATTTGAG+CGG | + | tig0022299:58388-58407 | None:intergenic | 35.0% |
| GTTTCGTTGAAGAATCGAAA+TGG | - | tig0022299:58613-58632 | Msa1398790:CDS | 35.0% | |
| ! | TGAGATTCTGAAGAAACAGA+TGG | - | tig0022299:58708-58727 | Msa1398790:CDS | 35.0% |
| GTGAAGAAATCAAAGGAGTT+GGG | - | tig0022299:58811-58830 | Msa1398790:CDS | 35.0% | |
| !! | AGAGAAGAAGGTTGATGATT+CGG | - | tig0022299:58834-58853 | Msa1398790:CDS | 35.0% |
| !! | GATAAGAGACTTGTTGAAGA+AGG | - | tig0022299:58895-58914 | Msa1398790:CDS | 35.0% |
| !! | GTGAGAAAGTTGAAAGTGTT+TGG | - | tig0022299:58935-58954 | Msa1398790:CDS | 35.0% |
| CATCTCATAGCAACATCTTT+CGG | + | tig0022299:59006-59025 | None:intergenic | 35.0% | |
| GAAAGATGTTGCTATGAGAT+GGG | - | tig0022299:59005-59024 | Msa1398790:CDS | 35.0% | |
| CAGAATTGAAGAAAGGGTTT+CGG | - | tig0022299:59085-59104 | Msa1398790:CDS | 35.0% | |
| !! | CAGATGAAAATCGATTTGAG+CGG | + | tig0022299:58388-58407 | None:intergenic | 35.0% |
| GTTTCGTTGAAGAATCGAAA+TGG | - | tig0022299:58613-58632 | Msa1398790:CDS | 35.0% | |
| ! | TGAGATTCTGAAGAAACAGA+TGG | - | tig0022299:58708-58727 | Msa1398790:CDS | 35.0% |
| GTGAAGAAATCAAAGGAGTT+GGG | - | tig0022299:58811-58830 | Msa1398790:CDS | 35.0% | |
| !! | AGAGAAGAAGGTTGATGATT+CGG | - | tig0022299:58834-58853 | Msa1398790:CDS | 35.0% |
| !! | GATAAGAGACTTGTTGAAGA+AGG | - | tig0022299:58895-58914 | Msa1398790:CDS | 35.0% |
| !! | GTGAGAAAGTTGAAAGTGTT+TGG | - | tig0022299:58935-58954 | Msa1398790:CDS | 35.0% |
| CATCTCATAGCAACATCTTT+CGG | + | tig0022299:59006-59025 | None:intergenic | 35.0% | |
| GAAAGATGTTGCTATGAGAT+GGG | - | tig0022299:59005-59024 | Msa1398790:CDS | 35.0% | |
| CAGAATTGAAGAAAGGGTTT+CGG | - | tig0022299:59085-59104 | Msa1398790:CDS | 35.0% | |
| !! | GATTTCGTTGGTTTCTGGTA+AGG | + | tig0022299:58295-58314 | None:intergenic | 40.0% |
| !! | TGAACGATTTCGTTGGTTTC+TGG | + | tig0022299:58300-58319 | None:intergenic | 40.0% |
| !! | CGCTCAAATCGATTTTCATC+TGG | - | tig0022299:58386-58405 | Msa1398790:CDS | 40.0% |
| TTTCCTGGAATCATCCTCAT+CGG | + | tig0022299:58521-58540 | None:intergenic | 40.0% | |
| ACAGATGGTGAAAAATCCAC+CGG | - | tig0022299:58723-58742 | Msa1398790:CDS | 40.0% | |
| AAGCGTGGTGAAGAAATCAA+AGG | - | tig0022299:58804-58823 | Msa1398790:CDS | 40.0% | |
| GGTGAAGAAATCAAAGGAGT+TGG | - | tig0022299:58810-58829 | Msa1398790:CDS | 40.0% | |
| ! | TCTGAAGAAGAGAAAAGCGT+TGG | - | tig0022299:58873-58892 | Msa1398790:CDS | 40.0% |
| !! | AAGAGACTTGTTGAAGAAGG+AGG | - | tig0022299:58898-58917 | Msa1398790:CDS | 40.0% |
| ! | AAGTGTTTGGAGTTCAAACG+AGG | - | tig0022299:58948-58967 | Msa1398790:CDS | 40.0% |
| CGAAAGATGTTGCTATGAGA+TGG | - | tig0022299:59004-59023 | Msa1398790:CDS | 40.0% | |
| !! | GATTTCGTTGGTTTCTGGTA+AGG | + | tig0022299:58295-58314 | None:intergenic | 40.0% |
| !! | TGAACGATTTCGTTGGTTTC+TGG | + | tig0022299:58300-58319 | None:intergenic | 40.0% |
| !! | CGCTCAAATCGATTTTCATC+TGG | - | tig0022299:58386-58405 | Msa1398790:CDS | 40.0% |
| TTTCCTGGAATCATCCTCAT+CGG | + | tig0022299:58521-58540 | None:intergenic | 40.0% | |
| ACAGATGGTGAAAAATCCAC+CGG | - | tig0022299:58723-58742 | Msa1398790:CDS | 40.0% | |
| AAGCGTGGTGAAGAAATCAA+AGG | - | tig0022299:58804-58823 | Msa1398790:CDS | 40.0% | |
| GGTGAAGAAATCAAAGGAGT+TGG | - | tig0022299:58810-58829 | Msa1398790:CDS | 40.0% | |
| ! | TCTGAAGAAGAGAAAAGCGT+TGG | - | tig0022299:58873-58892 | Msa1398790:CDS | 40.0% |
| !! | AAGAGACTTGTTGAAGAAGG+AGG | - | tig0022299:58898-58917 | Msa1398790:CDS | 40.0% |
| ! | AAGTGTTTGGAGTTCAAACG+AGG | - | tig0022299:58948-58967 | Msa1398790:CDS | 40.0% |
| CGAAAGATGTTGCTATGAGA+TGG | - | tig0022299:59004-59023 | Msa1398790:CDS | 40.0% | |
| ACAGCGATGAACGATTTCGT+TGG | + | tig0022299:58307-58326 | None:intergenic | 45.0% | |
| ! | TCGATTTGAGCGGTTCAGAT+TGG | + | tig0022299:58378-58397 | None:intergenic | 45.0% |
| TTTGCATTCTCTCTCCTCCT+TGG | - | tig0022299:58409-58428 | Msa1398790:CDS | 45.0% | |
| ! | GTAATGGAGATTGGAGCGAA+AGG | + | tig0022299:58436-58455 | None:intergenic | 45.0% |
| TTCGCTCCAATCTCCATTAC+CGG | - | tig0022299:58436-58455 | Msa1398790:CDS | 45.0% | |
| TTCCTGATCGGGGAAATTGA+CGG | + | tig0022299:58491-58510 | None:intergenic | 45.0% | |
| ATCGGTTGAGGTTTCCTGAT+CGG | + | tig0022299:58503-58522 | None:intergenic | 45.0% | |
| CGATTCTTCAACGAAACCAC+CGG | + | tig0022299:58610-58629 | None:intergenic | 45.0% | |
| !! | TGGAAACGGTGTTGCATTGT+CGG | - | tig0022299:58639-58658 | Msa1398790:CDS | 45.0% |
| CAGATGGTGAAAAATCCACC+GGG | - | tig0022299:58724-58743 | Msa1398790:CDS | 45.0% | |
| AGATGGTGAAAAATCCACCG+GGG | - | tig0022299:58725-58744 | Msa1398790:CDS | 45.0% | |
| AAAGGAGTTGGGAGAGAAGA+AGG | - | tig0022299:58822-58841 | Msa1398790:CDS | 45.0% | |
| AGAAGGAGGAGATTTAGCGA+CGG | - | tig0022299:58912-58931 | Msa1398790:CDS | 45.0% | |
| ACAGCGATGAACGATTTCGT+TGG | + | tig0022299:58307-58326 | None:intergenic | 45.0% | |
| ! | TCGATTTGAGCGGTTCAGAT+TGG | + | tig0022299:58378-58397 | None:intergenic | 45.0% |
| TTTGCATTCTCTCTCCTCCT+TGG | - | tig0022299:58409-58428 | Msa1398790:CDS | 45.0% | |
| ! | GTAATGGAGATTGGAGCGAA+AGG | + | tig0022299:58436-58455 | None:intergenic | 45.0% |
| TTCGCTCCAATCTCCATTAC+CGG | - | tig0022299:58436-58455 | Msa1398790:CDS | 45.0% | |
| TTCCTGATCGGGGAAATTGA+CGG | + | tig0022299:58491-58510 | None:intergenic | 45.0% | |
| ATCGGTTGAGGTTTCCTGAT+CGG | + | tig0022299:58503-58522 | None:intergenic | 45.0% | |
| CGATTCTTCAACGAAACCAC+CGG | + | tig0022299:58610-58629 | None:intergenic | 45.0% | |
| !! | TGGAAACGGTGTTGCATTGT+CGG | - | tig0022299:58639-58658 | Msa1398790:CDS | 45.0% |
| CAGATGGTGAAAAATCCACC+GGG | - | tig0022299:58724-58743 | Msa1398790:CDS | 45.0% | |
| AGATGGTGAAAAATCCACCG+GGG | - | tig0022299:58725-58744 | Msa1398790:CDS | 45.0% | |
| AAAGGAGTTGGGAGAGAAGA+AGG | - | tig0022299:58822-58841 | Msa1398790:CDS | 45.0% | |
| AGAAGGAGGAGATTTAGCGA+CGG | - | tig0022299:58912-58931 | Msa1398790:CDS | 45.0% | |
| CCGGACTGATACAGGAACTT+CGG | + | tig0022299:58247-58266 | None:intergenic | 50.0% | |
| CCGAAGTTCCTGTATCAGTC+CGG | - | tig0022299:58244-58263 | Msa1398790:CDS | 50.0% | |
| CTGGTAAGGCTGTGATTCAG+TGG | + | tig0022299:58281-58300 | None:intergenic | 50.0% | |
| AGATTGGAGCGAAAGGACCA+AGG | + | tig0022299:58429-58448 | None:intergenic | 50.0% | |
| GGAAATTGACGGCATGACCA+CGG | + | tig0022299:58480-58499 | None:intergenic | 50.0% | |
| TCGGTTGAGGTTTCCTGATC+GGG | + | tig0022299:58502-58521 | None:intergenic | 50.0% | |
| TCAGGAAACCTCAACCGATG+AGG | - | tig0022299:58504-58523 | Msa1398790:CDS | 50.0% | |
| ! | GGAATCATCCTCATCGGTTG+AGG | + | tig0022299:58515-58534 | None:intergenic | 50.0% |
| CAACCGATGAGGATGATTCC+AGG | - | tig0022299:58515-58534 | Msa1398790:CDS | 50.0% | |
| !!! | GCGCTGCTGAGATTTTTTCC+TGG | + | tig0022299:58536-58555 | None:intergenic | 50.0% |
| CAGATCCAAGCAACGCAGAT+CGG | - | tig0022299:58555-58574 | Msa1398790:CDS | 50.0% | |
| !! | AAACGGTGTTGCATTGTCGG+CGG | - | tig0022299:58642-58661 | Msa1398790:CDS | 50.0% |
| AAAAATCCACCGGGGAAACC+AGG | - | tig0022299:58733-58752 | Msa1398790:CDS | 50.0% | |
| GAAGGAGGAGATTTAGCGAC+GGG | - | tig0022299:58913-58932 | Msa1398790:CDS | 50.0% | |
| AAAGTTGCTGCTGCTGTTCC+TGG | - | tig0022299:59030-59049 | Msa1398790:CDS | 50.0% | |
| AAGTTGCTGCTGCTGTTCCT+GGG | - | tig0022299:59031-59050 | Msa1398790:CDS | 50.0% | |
| ! | CAAGCTGCTTTCGATTTCCC+AGG | + | tig0022299:59051-59070 | None:intergenic | 50.0% |
| GGGTTTCGGACTGCAAAATC+TGG | - | tig0022299:59099-59118 | Msa1398790:CDS | 50.0% | |
| CCGGACTGATACAGGAACTT+CGG | + | tig0022299:58247-58266 | None:intergenic | 50.0% | |
| CCGAAGTTCCTGTATCAGTC+CGG | - | tig0022299:58244-58263 | Msa1398790:CDS | 50.0% | |
| CTGGTAAGGCTGTGATTCAG+TGG | + | tig0022299:58281-58300 | None:intergenic | 50.0% | |
| AGATTGGAGCGAAAGGACCA+AGG | + | tig0022299:58429-58448 | None:intergenic | 50.0% | |
| GGAAATTGACGGCATGACCA+CGG | + | tig0022299:58480-58499 | None:intergenic | 50.0% | |
| TCGGTTGAGGTTTCCTGATC+GGG | + | tig0022299:58502-58521 | None:intergenic | 50.0% | |
| TCAGGAAACCTCAACCGATG+AGG | - | tig0022299:58504-58523 | Msa1398790:CDS | 50.0% | |
| ! | GGAATCATCCTCATCGGTTG+AGG | + | tig0022299:58515-58534 | None:intergenic | 50.0% |
| CAACCGATGAGGATGATTCC+AGG | - | tig0022299:58515-58534 | Msa1398790:CDS | 50.0% | |
| !!! | GCGCTGCTGAGATTTTTTCC+TGG | + | tig0022299:58536-58555 | None:intergenic | 50.0% |
| CAGATCCAAGCAACGCAGAT+CGG | - | tig0022299:58555-58574 | Msa1398790:CDS | 50.0% | |
| !! | AAACGGTGTTGCATTGTCGG+CGG | - | tig0022299:58642-58661 | Msa1398790:CDS | 50.0% |
| AAAAATCCACCGGGGAAACC+AGG | - | tig0022299:58733-58752 | Msa1398790:CDS | 50.0% | |
| GAAGGAGGAGATTTAGCGAC+GGG | - | tig0022299:58913-58932 | Msa1398790:CDS | 50.0% | |
| AAAGTTGCTGCTGCTGTTCC+TGG | - | tig0022299:59030-59049 | Msa1398790:CDS | 50.0% | |
| AAGTTGCTGCTGCTGTTCCT+GGG | - | tig0022299:59031-59050 | Msa1398790:CDS | 50.0% | |
| ! | CAAGCTGCTTTCGATTTCCC+AGG | + | tig0022299:59051-59070 | None:intergenic | 50.0% |
| GGGTTTCGGACTGCAAAATC+TGG | - | tig0022299:59099-59118 | Msa1398790:CDS | 50.0% | |
| TTGGAGCGAAAGGACCAAGG+AGG | + | tig0022299:58426-58445 | None:intergenic | 55.0% | |
| GCTCCAATCTCCATTACCGG+CGG | - | tig0022299:58439-58458 | Msa1398790:CDS | 55.0% | |
| TGCCGTCAATTTCCCCGATC+AGG | - | tig0022299:58486-58505 | Msa1398790:CDS | 55.0% | |
| CGGTTGAGGTTTCCTGATCG+GGG | + | tig0022299:58501-58520 | None:intergenic | 55.0% | |
| ATCGTCCGATCTGCGTTGCT+TGG | + | tig0022299:58563-58582 | None:intergenic | 55.0% | |
| TGGAGGAGGAGGAGAAGGAA+TGG | - | tig0022299:58671-58690 | Msa1398790:CDS | 55.0% | |
| GGAGAAGGAATGGAACGACG+AGG | - | tig0022299:58681-58700 | Msa1398790:CDS | 55.0% | |
| TTGGAGCGAAAGGACCAAGG+AGG | + | tig0022299:58426-58445 | None:intergenic | 55.0% | |
| GCTCCAATCTCCATTACCGG+CGG | - | tig0022299:58439-58458 | Msa1398790:CDS | 55.0% | |
| TGCCGTCAATTTCCCCGATC+AGG | - | tig0022299:58486-58505 | Msa1398790:CDS | 55.0% | |
| CGGTTGAGGTTTCCTGATCG+GGG | + | tig0022299:58501-58520 | None:intergenic | 55.0% | |
| ATCGTCCGATCTGCGTTGCT+TGG | + | tig0022299:58563-58582 | None:intergenic | 55.0% | |
| TGGAGGAGGAGGAGAAGGAA+TGG | - | tig0022299:58671-58690 | Msa1398790:CDS | 55.0% | |
| GGAGAAGGAATGGAACGACG+AGG | - | tig0022299:58681-58700 | Msa1398790:CDS | 55.0% | |
| AGGCTGTGATTCAGTGGCCG+CGG | + | tig0022299:58275-58294 | None:intergenic | 60.0% | |
| !! | TCGCCGCCGGTAATGGAGAT+TGG | + | tig0022299:58445-58464 | None:intergenic | 60.0% |
| CTCTGTAGTAGCTCCAGCGC+CGG | - | tig0022299:58588-58607 | Msa1398790:CDS | 60.0% | |
| TTCAACGAAACCACCGGCGC+TGG | + | tig0022299:58604-58623 | None:intergenic | 60.0% | |
| ATCCACCGGGGAAACCAGGA+CGG | - | tig0022299:58737-58756 | Msa1398790:CDS | 60.0% | |
| !! | GAGGCGATAGCGGAGGCATT+CGG | - | tig0022299:58763-58782 | Msa1398790:CDS | 60.0% |
| !! | CGATAGCGGAGGCATTCGGA+GGG | - | tig0022299:58767-58786 | Msa1398790:CDS | 60.0% |
| !! | ATTCGGAGGGCGTCACAAGG+TGG | - | tig0022299:58780-58799 | Msa1398790:CDS | 60.0% |
| GCGTCACAAGGTGGAAAGCG+TGG | - | tig0022299:58789-58808 | Msa1398790:CDS | 60.0% | |
| AGGCTGTGATTCAGTGGCCG+CGG | + | tig0022299:58275-58294 | None:intergenic | 60.0% | |
| !! | TCGCCGCCGGTAATGGAGAT+TGG | + | tig0022299:58445-58464 | None:intergenic | 60.0% |
| CTCTGTAGTAGCTCCAGCGC+CGG | - | tig0022299:58588-58607 | Msa1398790:CDS | 60.0% | |
| TTCAACGAAACCACCGGCGC+TGG | + | tig0022299:58604-58623 | None:intergenic | 60.0% | |
| ATCCACCGGGGAAACCAGGA+CGG | - | tig0022299:58737-58756 | Msa1398790:CDS | 60.0% | |
| !! | GAGGCGATAGCGGAGGCATT+CGG | - | tig0022299:58763-58782 | Msa1398790:CDS | 60.0% |
| !! | CGATAGCGGAGGCATTCGGA+GGG | - | tig0022299:58767-58786 | Msa1398790:CDS | 60.0% |
| !! | ATTCGGAGGGCGTCACAAGG+TGG | - | tig0022299:58780-58799 | Msa1398790:CDS | 60.0% |
| GCGTCACAAGGTGGAAAGCG+TGG | - | tig0022299:58789-58808 | Msa1398790:CDS | 60.0% | |
| CGGGTGCACCGGACTGATAC+AGG | + | tig0022299:58255-58274 | None:intergenic | 65.0% | |
| GTATCAGTCCGGTGCACCCG+CGG | - | tig0022299:58255-58274 | Msa1398790:CDS | 65.0% | |
| GGCTGTGATTCAGTGGCCGC+GGG | + | tig0022299:58274-58293 | None:intergenic | 65.0% | |
| ACGGGAATCGCCGCCGGTAA+TGG | + | tig0022299:58452-58471 | None:intergenic | 65.0% | |
| ! | CGGCGCTGGAGCTACTACAG+AGG | + | tig0022299:58590-58609 | None:intergenic | 65.0% |
| ! | TGTAGTAGCTCCAGCGCCGG+TGG | - | tig0022299:58591-58610 | Msa1398790:CDS | 65.0% |
| !! | CGGTGTTGCATTGTCGGCGG+CGG | - | tig0022299:58645-58664 | Msa1398790:CDS | 65.0% |
| TGTTGCATTGTCGGCGGCGG+TGG | - | tig0022299:58648-58667 | Msa1398790:CDS | 65.0% | |
| !! | GGTGGTGGAGGAGGAGGAGA+AGG | - | tig0022299:58666-58685 | Msa1398790:CDS | 65.0% |
| ACCGGGGAAACCAGGACGGT+GGG | - | tig0022299:58741-58760 | Msa1398790:CDS | 65.0% | |
| TCCCACCGTCCTGGTTTCCC+CGG | + | tig0022299:58745-58764 | None:intergenic | 65.0% | |
| AGGACGGTGGGAGGCGATAG+CGG | - | tig0022299:58753-58772 | Msa1398790:CDS | 65.0% | |
| !! | GCGATAGCGGAGGCATTCGG+AGG | - | tig0022299:58766-58785 | Msa1398790:CDS | 65.0% |
| !! | GGCATTCGGAGGGCGTCACA+AGG | - | tig0022299:58777-58796 | Msa1398790:CDS | 65.0% |
| CGGGTGCACCGGACTGATAC+AGG | + | tig0022299:58255-58274 | None:intergenic | 65.0% | |
| GTATCAGTCCGGTGCACCCG+CGG | - | tig0022299:58255-58274 | Msa1398790:CDS | 65.0% | |
| GGCTGTGATTCAGTGGCCGC+GGG | + | tig0022299:58274-58293 | None:intergenic | 65.0% | |
| ACGGGAATCGCCGCCGGTAA+TGG | + | tig0022299:58452-58471 | None:intergenic | 65.0% | |
| ! | CGGCGCTGGAGCTACTACAG+AGG | + | tig0022299:58590-58609 | None:intergenic | 65.0% |
| ! | TGTAGTAGCTCCAGCGCCGG+TGG | - | tig0022299:58591-58610 | Msa1398790:CDS | 65.0% |
| !! | CGGTGTTGCATTGTCGGCGG+CGG | - | tig0022299:58645-58664 | Msa1398790:CDS | 65.0% |
| TGTTGCATTGTCGGCGGCGG+TGG | - | tig0022299:58648-58667 | Msa1398790:CDS | 65.0% | |
| !! | GGTGGTGGAGGAGGAGGAGA+AGG | - | tig0022299:58666-58685 | Msa1398790:CDS | 65.0% |
| ACCGGGGAAACCAGGACGGT+GGG | - | tig0022299:58741-58760 | Msa1398790:CDS | 65.0% | |
| TCCCACCGTCCTGGTTTCCC+CGG | + | tig0022299:58745-58764 | None:intergenic | 65.0% | |
| AGGACGGTGGGAGGCGATAG+CGG | - | tig0022299:58753-58772 | Msa1398790:CDS | 65.0% | |
| !! | GCGATAGCGGAGGCATTCGG+AGG | - | tig0022299:58766-58785 | Msa1398790:CDS | 65.0% |
| !! | GGCATTCGGAGGGCGTCACA+AGG | - | tig0022299:58777-58796 | Msa1398790:CDS | 65.0% |
| TTCAGTGGCCGCGGGTGCAC+CGG | + | tig0022299:58266-58285 | None:intergenic | 70.0% | |
| ACCGGCGGCGATTCCCGTGT+CGG | - | tig0022299:58454-58473 | Msa1398790:CDS | 70.0% | |
| GGCATGACCACGGCCGACAC+GGG | + | tig0022299:58470-58489 | None:intergenic | 70.0% | |
| CGGCATGACCACGGCCGACA+CGG | + | tig0022299:58471-58490 | None:intergenic | 70.0% | |
| TGCATTGTCGGCGGCGGTGG+TGG | - | tig0022299:58651-58670 | Msa1398790:CDS | 70.0% | |
| ! | ATTGTCGGCGGCGGTGGTGG+AGG | - | tig0022299:58654-58673 | Msa1398790:CDS | 70.0% |
| CACCGTCCTGGTTTCCCCGG+TGG | + | tig0022299:58742-58761 | None:intergenic | 70.0% | |
| CACCGGGGAAACCAGGACGG+TGG | - | tig0022299:58740-58759 | Msa1398790:CDS | 70.0% | |
| GGGGAAACCAGGACGGTGGG+AGG | - | tig0022299:58744-58763 | Msa1398790:CDS | 70.0% | |
| GCTATCGCCTCCCACCGTCC+TGG | + | tig0022299:58754-58773 | None:intergenic | 70.0% | |
| ! | ACGGTGGGAGGCGATAGCGG+AGG | - | tig0022299:58756-58775 | Msa1398790:CDS | 70.0% |
| TTCAGTGGCCGCGGGTGCAC+CGG | + | tig0022299:58266-58285 | None:intergenic | 70.0% | |
| ACCGGCGGCGATTCCCGTGT+CGG | - | tig0022299:58454-58473 | Msa1398790:CDS | 70.0% | |
| GGCATGACCACGGCCGACAC+GGG | + | tig0022299:58470-58489 | None:intergenic | 70.0% | |
| CGGCATGACCACGGCCGACA+CGG | + | tig0022299:58471-58490 | None:intergenic | 70.0% | |
| TGCATTGTCGGCGGCGGTGG+TGG | - | tig0022299:58651-58670 | Msa1398790:CDS | 70.0% | |
| ! | ATTGTCGGCGGCGGTGGTGG+AGG | - | tig0022299:58654-58673 | Msa1398790:CDS | 70.0% |
| CACCGTCCTGGTTTCCCCGG+TGG | + | tig0022299:58742-58761 | None:intergenic | 70.0% | |
| CACCGGGGAAACCAGGACGG+TGG | - | tig0022299:58740-58759 | Msa1398790:CDS | 70.0% | |
| GGGGAAACCAGGACGGTGGG+AGG | - | tig0022299:58744-58763 | Msa1398790:CDS | 70.0% | |
| GCTATCGCCTCCCACCGTCC+TGG | + | tig0022299:58754-58773 | None:intergenic | 70.0% | |
| ! | ACGGTGGGAGGCGATAGCGG+AGG | - | tig0022299:58756-58775 | Msa1398790:CDS | 70.0% |
| GCCGACACGGGAATCGCCGC+CGG | + | tig0022299:58458-58477 | None:intergenic | 75.0% | |
| ! | GGCGATTCCCGTGTCGGCCG+TGG | - | tig0022299:58460-58479 | Msa1398790:CDS | 75.0% |
| GCCGACACGGGAATCGCCGC+CGG | + | tig0022299:58458-58477 | None:intergenic | 75.0% | |
| ! | GGCGATTCCCGTGTCGGCCG+TGG | - | tig0022299:58460-58479 | Msa1398790:CDS | 75.0% |
| !!! | GTCGGCGGCGGTGGTGGAGG+AGG | - | tig0022299:58657-58676 | Msa1398790:CDS | 80.0% |
| !!! | GGCGGCGGTGGTGGAGGAGG+AGG | - | tig0022299:58660-58679 | Msa1398790:CDS | 80.0% |
| !!! | GTCGGCGGCGGTGGTGGAGG+AGG | - | tig0022299:58657-58676 | Msa1398790:CDS | 80.0% |
| !!! | GGCGGCGGTGGTGGAGGAGG+AGG | - | tig0022299:58660-58679 | Msa1398790:CDS | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0022299 | gene | 58217 | 59134 | 58217 | ID=Msa1398790;Name=Msa1398790 |
| tig0022299 | mRNA | 58217 | 59134 | 58217 | ID=Msa1398790-mRNA-1;Parent=Msa1398790;Name=Msa1398790-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0|-1|0|1|-1|1|1|0|305 |
| tig0022299 | exon | 58217 | 59134 | 58217 | ID=Msa1398790-mRNA-1:exon:16822;Parent=Msa1398790-mRNA-1 |
| tig0022299 | CDS | 58217 | 59134 | 58217 | ID=Msa1398790-mRNA-1:cds;Parent=Msa1398790-mRNA-1 |
| Gene Sequence |
| Protein sequence |
