AlfalfaGEDB | Msa0297200

M. sativa cultivar zhongmu-4 / Msa0297200

KEGG: -
GO: -
PFAM: PF06749.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297200	XP_003597047.1	98.734	158	2	0	1	158	1	158	6.65e-109	317

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297200	sp\|O81898\|DEAL2_ARATH	68.354	158	50	0	1	158	1	158	2.27e-77	230

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297200	G7IKM8	98.734	158	2	0	1	158	1	158	3.18e-109	317

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006840	Msa0297200	0.806044	9.955644e-50	-8.615850e-47
Msa0026250	Msa0297200	0.807269	5.490027e-50	-8.615850e-47
Msa0037660	Msa0297200	0.812748	3.627289e-51	-8.615850e-47
Msa0045620	Msa0297200	0.837580	4.780145e-57	-8.615850e-47
Msa0050530	Msa0297200	0.826933	2.066547e-54	-8.615850e-47
Msa0055880	Msa0297200	0.805538	1.271705e-49	-8.615850e-47
Msa0056000	Msa0297200	0.800517	1.388710e-48	-8.615850e-47
Msa0089540	Msa0297200	0.834197	3.445549e-56	-8.615850e-47
Msa0099690	Msa0297200	0.837110	6.306268e-57	-8.615850e-47
Msa0100600	Msa0297200	0.820450	6.815836e-53	-8.615850e-47
Msa0100890	Msa0297200	0.816860	4.448812e-52	-8.615850e-47
Msa0135230	Msa0297200	0.821560	3.784656e-53	-8.615850e-47
Msa0148310	Msa0297200	0.843143	1.679577e-58	-8.615850e-47
Msa0152190	Msa0297200	-0.807820	4.194103e-50	-8.615850e-47
Msa0173380	Msa0297200	0.803755	2.996765e-49	-8.615850e-47
Msa0219840	Msa0297200	0.882747	8.034273e-71	-8.615850e-47
Msa0221180	Msa0297200	0.802353	5.841411e-49	-8.615850e-47
Msa0260980	Msa0297200	0.806108	9.652257e-50	-8.615850e-47
Msa0297200	Msa0336430	0.817997	2.465949e-52	-8.615850e-47
Msa0297200	Msa0336460	0.809543	1.796150e-50	-8.615850e-47
Msa0297200	Msa0336520	0.823604	1.266306e-53	-8.615850e-47
Msa0297200	Msa0372100	0.810202	1.296177e-50	-8.615850e-47
Msa0297200	Msa0416210	0.813515	2.461652e-51	-8.615850e-47
Msa0297200	Msa0509630	0.808277	3.351121e-50	-8.615850e-47
Msa0297200	Msa0513580	-0.826344	2.856374e-54	-8.615850e-47
Msa0297200	Msa0541880	0.831227	1.880925e-55	-8.615850e-47
Msa0297200	Msa0541940	0.822387	2.433930e-53	-8.615850e-47
Msa0297200	Msa0568460	-0.803894	2.804003e-49	-8.615850e-47
Msa0297200	Msa0571350	0.825704	4.053491e-54	-8.615850e-47
Msa0297200	Msa0587180	0.820137	8.039007e-53	-8.615850e-47
Msa0297200	Msa0605520	0.832278	1.035808e-55	-8.615850e-47
Msa0297200	Msa0612880	-0.813169	2.931983e-51	-8.615850e-47
Msa0297200	Msa0616230	0.806320	8.712417e-50	-8.615850e-47
Msa0297200	Msa0623310	0.823281	1.506787e-53	-8.615850e-47
Msa0297200	Msa0655710	0.814975	1.171803e-51	-8.615850e-47
Msa0297200	Msa0659020	-0.804998	1.650566e-49	-8.615850e-47
Msa0297200	Msa0660260	0.817291	3.558022e-52	-8.615850e-47
Msa0297200	Msa0673940	0.816941	4.265650e-52	-8.615850e-47
Msa0297200	Msa0685610	0.839677	1.372993e-57	-8.615850e-47
Msa0297200	Msa0706690	0.847074	1.455780e-59	-8.615850e-47
Msa0297200	Msa0751720	0.818986	1.471713e-52	-8.615850e-47
Msa0297200	Msa0756670	-0.802691	4.974554e-49	-8.615850e-47
Msa0297200	Msa0761830	0.821767	3.389505e-53	-8.615850e-47
Msa0297200	Msa0836060	-0.812890	3.375926e-51	-8.615850e-47
Msa0297200	Msa0846900	0.817555	3.102745e-52	-8.615850e-47
Msa0297200	Msa0921340	0.806301	8.792185e-50	-8.615850e-47
Msa0297200	Msa0929900	0.803729	3.033248e-49	-8.615850e-47
Msa0297200	Msa0970040	0.817722	2.845043e-52	-8.615850e-47
Msa0297200	Msa0978980	0.810506	1.114279e-50	-8.615850e-47
Msa0297200	Msa1026710	0.828649	7.993827e-55	-8.615850e-47
Msa0297200	Msa1038860	0.800447	1.434842e-48	-8.615850e-47
Msa0297200	Msa1127200	0.810279	1.247303e-50	-8.615850e-47
Msa0297200	Msa1130770	0.806534	7.852372e-50	-8.615850e-47
Msa0297200	Msa1146980	0.802087	6.625923e-49	-8.615850e-47
Msa0297200	Msa1154630	0.823537	1.313506e-53	-8.615850e-47
Msa0297200	Msa1231490	0.800857	1.183838e-48	-8.615850e-47
Msa0297200	Msa1278030	0.807504	4.895289e-50	-8.615850e-47
Msa0297200	Msa1308860	0.816393	5.659418e-52	-8.615850e-47
Msa0297200	Msa1343460	0.845951	2.948008e-59	-8.615850e-47
Msa0297200	Msa1347610	0.802589	5.223293e-49	-8.615850e-47
Msa0297200	Msa1356450	0.824068	9.862028e-54	-8.615850e-47
Msa0297200	Msa1368170	0.800637	1.312418e-48	-8.615850e-47
Msa0297200	Msa1371270	0.841076	5.916319e-58	-8.615850e-47
Msa0297200	Msa1371800	0.833868	4.164408e-56	-8.615850e-47
Msa0297200	Msa1372030	0.809488	1.845608e-50	-8.615850e-47
Msa0297200	Msa1376310	0.837525	4.936362e-57	-8.615850e-47
Msa0297200	Msa1377140	0.934647	2.919922e-96	-8.615850e-47
Msa0297200	Msa1385570	0.805574	1.250209e-49	-8.615850e-47
Msa0297200	Msa1387100	-0.800148	1.650694e-48	-8.615850e-47
Msa0297200	Msa1420830	0.836717	7.943068e-57	-8.615850e-47
Msa0297200	Msa1430460	-0.807523	4.847860e-50	-8.615850e-47
Msa0297200	Msa1447900	0.803379	3.584847e-49	-8.615850e-47
Msa0297200	Msa1453030	0.935544	7.172886e-97	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297200	MtrunA17_Chr2g0323081	98.734	158	2	1	158	1	158	6.12e-113	317
Msa0297200	MtrunA17_Chr4g0023621	70.253	158	47	1	158	1	158	4.94e-80	234
Msa0297200	MtrunA17_Chr4g0049001	60.127	158	63	1	158	1	158	4.49e-71	211
Msa0297200	MtrunA17_Chr2g0280491	60.127	158	63	1	158	1	158	9.86e-62	188

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0297200	AT4G21310.1	68.354	158	50	0	1	158	1	158	2.30e-78	230
Msa0297200	AT2G32280.1	62.025	158	60	0	1	158	1	158	1.43e-71	213
Msa0297200	AT2G32280.2	62.025	158	60	0	1	158	1	158	1.43e-71	213
Msa0297200	AT4G21310.2	65.000	120	42	0	39	158	1	120	2.12e-54	168
Msa0297200	AT1G11500.1	41.212	165	90	1	1	158	1	165	5.10e-36	123
Msa0297200	AT1G11500.3	41.212	165	90	1	1	158	6	170	6.81e-36	123
Msa0297200	AT1G11500.2	43.860	114	64	0	45	158	24	137	1.96e-27	100
Msa0297200	AT1G05291.1	38.776	147	83	3	12	155	23	165	1.49e-23	92.0

Find 63 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TATTTACACCACTTGTACTA+TGG	0.160122	2_3:-50855988	Msa0297200:three_prime_UTR
ATTTAGTAAAGCAACAAATT+TGG	0.256307	2_3:+50856025	None:intergenic
AGTCATAAGGCCTTCATGTT+TGG	0.331948	2_3:-50856746	Msa0297200:CDS
CTTTCATTGGACAATGACTT+TGG	0.342392	2_3:+50855845	None:intergenic
GATGTCACAGCTGGGATTCT+TGG	0.346927	2_3:-50857122	Msa0297200:CDS
ACCGCAGCCACCTAGCAAAT+TGG	0.354925	2_3:+50856682	None:intergenic
GTAGAAAGATCTATAATCTA+TGG	0.358121	2_3:+50855811	None:intergenic
GCCATTGAGAGTTGCCTATT+GGG	0.372087	2_3:+50856623	None:intergenic
GGCCATTGAGAGTTGCCTAT+TGG	0.393490	2_3:+50856622	None:intergenic
ATGTCTCTTGATTGTTATCA+TGG	0.396765	2_3:-50857144	Msa0297200:CDS
GGTAATCTAAAATCTTTCAT+TGG	0.398016	2_3:+50855832	None:intergenic
GGATTGAGCATGTTGGTGAT+AGG	0.405472	2_3:-50856254	Msa0297200:CDS
GAAATTAATTCTCTCAGAAA+TGG	0.412103	2_3:-50857189	Msa0297200:exon
TTCCTTAGTCACTAATTAAG+AGG	0.431827	2_3:+50856106	None:intergenic
GTTGTTGATCAGGATTGTTT+TGG	0.434468	2_3:-50856282	Msa0297200:intron
ATTTACACCACTTGTACTAT+GGG	0.441892	2_3:-50855987	Msa0297200:three_prime_UTR
TACACATGTCAGTGGATTAG+TGG	0.447914	2_3:+50855918	None:intergenic
GACCATCACTTTCTATCCAT+TGG	0.452040	2_3:-50856188	Msa0297200:CDS
CACAAAAGCAAGAGCAGAAG+TGG	0.467268	2_3:+50856067	None:intergenic
GCCAATTTGCTAGGTGGCTG+CGG	0.471857	2_3:-50856683	Msa0297200:CDS
ACCCAATAGGCAACTCTCAA+TGG	0.473987	2_3:-50856624	Msa0297200:CDS
TGCCTCTTAATTAGTGACTA+AGG	0.478388	2_3:-50856108	Msa0297200:exon
GACTAAGGAAACACATAGAA+TGG	0.481433	2_3:-50856093	Msa0297200:three_prime_UTR
TTCAAAAGTCTTCACCCAAT+AGG	0.481487	2_3:-50856637	Msa0297200:CDS
GTTATCATGGATGTCACAGC+TGG	0.486047	2_3:-50857131	Msa0297200:CDS
TCAGAAATGGCTAGAGAAGT+TGG	0.488463	2_3:-50857176	Msa0297200:exon
TTGGTAAAGAAAAGCATACT+TGG	0.490894	2_3:-50857218	Msa0297200:five_prime_UTR
TCTCTTTCTTAGCTAGCACT+TGG	0.498790	2_3:-50857237	Msa0297200:five_prime_UTR
AGTGGTGTAAATAAATGTCT+TGG	0.502466	2_3:+50855998	None:intergenic
AGGTTAAACACTTGAGATTG+TGG	0.506672	2_3:-50856790	Msa0297200:CDS
ATCACTTTCTATCCATTGGT+GGG	0.512449	2_3:-50856184	Msa0297200:CDS
AACATGAAGGCCTTATGACT+TGG	0.519268	2_3:+50856749	None:intergenic
CATGTTATAGCCAATTTGCT+AGG	0.526723	2_3:-50856692	Msa0297200:CDS
GTGTAGAGATCCAAGTCATA+AGG	0.530738	2_3:-50856759	Msa0297200:CDS
AAGAAACTAAATTAGAATTG+TGG	0.537544	2_3:+50855884	None:intergenic
GATTGAGCATGTTGGTGATA+GGG	0.548783	2_3:-50856253	Msa0297200:CDS
ATGTCAGTGGATTAGTGGAT+AGG	0.552511	2_3:+50855923	None:intergenic
ATATATATCAAAACAATGGT+GGG	0.552734	2_3:+50857284	None:intergenic
AATATATATCAAAACAATGG+TGG	0.553731	2_3:+50857283	None:intergenic
CATCACTTTCTATCCATTGG+TGG	0.556658	2_3:-50856185	Msa0297200:CDS
TTTATACCCCATAGTACAAG+TGG	0.557532	2_3:+50855980	None:intergenic
TAAATTAAAATAGTCCATCA+TGG	0.558416	2_3:+50855752	None:intergenic
GGCTGTTGGATTGAGCATGT+TGG	0.561637	2_3:-50856261	Msa0297200:CDS
AAAACAAACAACAGATCAAG+TGG	0.563378	2_3:-50856227	Msa0297200:CDS
CTAGCAAATTGGCTATAACA+TGG	0.567612	2_3:+50856693	None:intergenic
AGTCACTAATTAAGAGGCAG+TGG	0.571955	2_3:+50856112	None:intergenic
TATATTACCATGTTAAAATG+AGG	0.574693	2_3:+50856597	None:intergenic
AAAACACAAAATCCCACCAA+TGG	0.578066	2_3:+50856172	None:intergenic
TAGCAAATTGGCTATAACAT+GGG	0.592154	2_3:+50856694	None:intergenic
AGCTGAAATTGCTCAAAACA+AGG	0.596775	2_3:-50857093	Msa0297200:intron
TTACCATGTTAAAATGAGGA+TGG	0.599472	2_3:+50856601	None:intergenic
TGCAGCTAATCCAAACATGA+AGG	0.600785	2_3:+50856736	None:intergenic
AGTGCTAGCTAAGAAAGAGA+AGG	0.605463	2_3:+50857240	None:intergenic
AACAGATCAAGTGGTACTTG+TGG	0.611029	2_3:-50856218	Msa0297200:CDS
TCAAATATATATCAAAACAA+TGG	0.627954	2_3:+50857280	None:intergenic
TTTACACCACTTGTACTATG+GGG	0.643321	2_3:-50855986	Msa0297200:three_prime_UTR
GTTATAGCCAATTTGCTAGG+TGG	0.649884	2_3:-50856689	Msa0297200:CDS
TTATCATGGATGTCACAGCT+GGG	0.651085	2_3:-50857130	Msa0297200:CDS
AACTAAATTAGAATTGTGGT+AGG	0.658381	2_3:+50855888	None:intergenic
GCACACACTACACATGTCAG+TGG	0.658680	2_3:+50855910	None:intergenic
AAGAAACACAGAATAGACCA+TGG	0.662268	2_3:+50856147	None:intergenic
CACCAATGGATAGAAAGTGA+TGG	0.663881	2_3:+50856186	None:intergenic
TAAGGAAACACATAGAATGG+AGG	0.696438	2_3:-50856090	Msa0297200:three_prime_UTR

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTATTTTATTTTACAAAATC+AGG	-	chr2_3:50856280-50856299	Msa0297200:intron	10.0%
!!	TTTGATAAACATTTAAAAAT+GGG	+	chr2_3:50857143-50857162	None:intergenic	10.0%
!!	ATTTGATAAACATTTAAAAA+TGG	+	chr2_3:50857144-50857163	None:intergenic	10.0%
!!!	TTATTTTATTTTACAAAATC+AGG	-	chr2_3:50856280-50856299	Msa0297200:intron	10.0%
!!	TTTGATAAACATTTAAAAAT+GGG	+	chr2_3:50857143-50857162	None:intergenic	10.0%
!!	ATTTGATAAACATTTAAAAA+TGG	+	chr2_3:50857144-50857163	None:intergenic	10.0%
!!	TCAAATATATATCAAAACAA+TGG	+	chr2_3:50855813-50855832	None:intergenic	15.0%
!!	AAAATTAATGTACATTATCA+TGG	+	chr2_3:50856204-50856223	None:intergenic	15.0%
!!!	ATTTTATTTTAATACCATGA+TGG	-	chr2_3:50857324-50857343	Msa0297200:five_prime_UTR	15.0%
!!	TCAAATATATATCAAAACAA+TGG	+	chr2_3:50855813-50855832	None:intergenic	15.0%
!!	AAAATTAATGTACATTATCA+TGG	+	chr2_3:50856204-50856223	None:intergenic	15.0%
!!!	ATTTTATTTTAATACCATGA+TGG	-	chr2_3:50857324-50857343	Msa0297200:five_prime_UTR	15.0%
!!	ATATATATCAAAACAATGGT+GGG	+	chr2_3:50855809-50855828	None:intergenic	20.0%
!!	AATATATATCAAAACAATGG+TGG	+	chr2_3:50855810-50855829	None:intergenic	20.0%
!!!	GTTTTATAGAATTAGAAACA+TGG	+	chr2_3:50856042-50856061	None:intergenic	20.0%
!!	TATATTACCATGTTAAAATG+AGG	+	chr2_3:50856496-50856515	None:intergenic	20.0%
!!!	AAATTCAGTGTTTTAAAAAC+CGG	+	chr2_3:50856712-50856731	None:intergenic	20.0%
!!	ATTTAGTAAAGCAACAAATT+TGG	+	chr2_3:50857068-50857087	None:intergenic	20.0%
!!	AAGAAACTAAATTAGAATTG+TGG	+	chr2_3:50857209-50857228	None:intergenic	20.0%
!!	ATATATATCAAAACAATGGT+GGG	+	chr2_3:50855809-50855828	None:intergenic	20.0%
!!	AATATATATCAAAACAATGG+TGG	+	chr2_3:50855810-50855829	None:intergenic	20.0%
!!!	GTTTTATAGAATTAGAAACA+TGG	+	chr2_3:50856042-50856061	None:intergenic	20.0%
!!	TATATTACCATGTTAAAATG+AGG	+	chr2_3:50856496-50856515	None:intergenic	20.0%
!!!	AAATTCAGTGTTTTAAAAAC+CGG	+	chr2_3:50856712-50856731	None:intergenic	20.0%
!!	ATTTAGTAAAGCAACAAATT+TGG	+	chr2_3:50857068-50857087	None:intergenic	20.0%
!!	AAGAAACTAAATTAGAATTG+TGG	+	chr2_3:50857209-50857228	None:intergenic	20.0%
!	GAAATTAATTCTCTCAGAAA+TGG	-	chr2_3:50855901-50855920	Msa0297200:three_prime_UTR	25.0%
!	TCAATCACAGTACAATTATT+AGG	+	chr2_3:50856162-50856181	None:intergenic	25.0%
!	CAACAACGTAATTAAAACAA+TGG	+	chr2_3:50856795-50856814	None:intergenic	25.0%
!!!	TTTTAATTACGTTGTTGATC+AGG	-	chr2_3:50856798-50856817	Msa0297200:intron	25.0%
!	AACTAAATTAGAATTGTGGT+AGG	+	chr2_3:50857205-50857224	None:intergenic	25.0%
!!	GGTAATCTAAAATCTTTCAT+TGG	+	chr2_3:50857261-50857280	None:intergenic	25.0%
!	GTAGAAAGATCTATAATCTA+TGG	+	chr2_3:50857282-50857301	None:intergenic	25.0%
!	GAAATTAATTCTCTCAGAAA+TGG	-	chr2_3:50855901-50855920	Msa0297200:three_prime_UTR	25.0%
!	TCAATCACAGTACAATTATT+AGG	+	chr2_3:50856162-50856181	None:intergenic	25.0%
!	CAACAACGTAATTAAAACAA+TGG	+	chr2_3:50856795-50856814	None:intergenic	25.0%
!!!	TTTTAATTACGTTGTTGATC+AGG	-	chr2_3:50856798-50856817	Msa0297200:intron	25.0%
!	AACTAAATTAGAATTGTGGT+AGG	+	chr2_3:50857205-50857224	None:intergenic	25.0%
!!	GGTAATCTAAAATCTTTCAT+TGG	+	chr2_3:50857261-50857280	None:intergenic	25.0%
!	GTAGAAAGATCTATAATCTA+TGG	+	chr2_3:50857282-50857301	None:intergenic	25.0%
!	TTGGTAAAGAAAAGCATACT+TGG	-	chr2_3:50855872-50855891	Msa0297200:three_prime_UTR	30.0%
	ATGTCTCTTGATTGTTATCA+TGG	-	chr2_3:50855946-50855965	Msa0297200:three_prime_UTR	30.0%
	TAGCAAATTGGCTATAACAT+GGG	+	chr2_3:50856399-50856418	None:intergenic	30.0%
	TTACCATGTTAAAATGAGGA+TGG	+	chr2_3:50856492-50856511	None:intergenic	30.0%
	GAAAACAAGTAGAGGAATTA+GGG	+	chr2_3:50856520-50856539	None:intergenic	30.0%
	TTCAACTGCTTACAAAACTA+TGG	+	chr2_3:50856636-50856655	None:intergenic	30.0%
!!!	TAGTTTTGTAAGCAGTTGAA+CGG	-	chr2_3:50856636-50856655	Msa0297200:CDS	30.0%
	ACCATGATAAAAAGTTCCAT+TGG	-	chr2_3:50856673-50856692	Msa0297200:CDS	30.0%
!	ACCAATGGAACTTTTTATCA+TGG	+	chr2_3:50856677-50856696	None:intergenic	30.0%
	CATTTATTAGTGAACTCTCA+TGG	+	chr2_3:50856759-50856778	None:intergenic	30.0%
	AAAACAAACAACAGATCAAG+TGG	-	chr2_3:50856863-50856882	Msa0297200:intron	30.0%
	TTCCTTAGTCACTAATTAAG+AGG	+	chr2_3:50856987-50857006	None:intergenic	30.0%
	AGTGGTGTAAATAAATGTCT+TGG	+	chr2_3:50857095-50857114	None:intergenic	30.0%
	TATTTACACCACTTGTACTA+TGG	-	chr2_3:50857102-50857121	Msa0297200:CDS	30.0%
	ATTTACACCACTTGTACTAT+GGG	-	chr2_3:50857103-50857122	Msa0297200:CDS	30.0%
!	TTGGTAAAGAAAAGCATACT+TGG	-	chr2_3:50855872-50855891	Msa0297200:three_prime_UTR	30.0%
	ATGTCTCTTGATTGTTATCA+TGG	-	chr2_3:50855946-50855965	Msa0297200:three_prime_UTR	30.0%
	TAGCAAATTGGCTATAACAT+GGG	+	chr2_3:50856399-50856418	None:intergenic	30.0%
	TTACCATGTTAAAATGAGGA+TGG	+	chr2_3:50856492-50856511	None:intergenic	30.0%
	GAAAACAAGTAGAGGAATTA+GGG	+	chr2_3:50856520-50856539	None:intergenic	30.0%
	TTCAACTGCTTACAAAACTA+TGG	+	chr2_3:50856636-50856655	None:intergenic	30.0%
!!!	TAGTTTTGTAAGCAGTTGAA+CGG	-	chr2_3:50856636-50856655	Msa0297200:CDS	30.0%
	ACCATGATAAAAAGTTCCAT+TGG	-	chr2_3:50856673-50856692	Msa0297200:CDS	30.0%
!	ACCAATGGAACTTTTTATCA+TGG	+	chr2_3:50856677-50856696	None:intergenic	30.0%
	CATTTATTAGTGAACTCTCA+TGG	+	chr2_3:50856759-50856778	None:intergenic	30.0%
	AAAACAAACAACAGATCAAG+TGG	-	chr2_3:50856863-50856882	Msa0297200:intron	30.0%
	TTCCTTAGTCACTAATTAAG+AGG	+	chr2_3:50856987-50857006	None:intergenic	30.0%
	AGTGGTGTAAATAAATGTCT+TGG	+	chr2_3:50857095-50857114	None:intergenic	30.0%
	TATTTACACCACTTGTACTA+TGG	-	chr2_3:50857102-50857121	Msa0297200:CDS	30.0%
	ATTTACACCACTTGTACTAT+GGG	-	chr2_3:50857103-50857122	Msa0297200:CDS	30.0%
	AGCTGAAATTGCTCAAAACA+AGG	-	chr2_3:50855997-50856016	Msa0297200:three_prime_UTR	35.0%
	AGGTTAAACACTTGAGATTG+TGG	-	chr2_3:50856300-50856319	Msa0297200:intron	35.0%
	CTAGCAAATTGGCTATAACA+TGG	+	chr2_3:50856400-50856419	None:intergenic	35.0%
!	CATGTTATAGCCAATTTGCT+AGG	-	chr2_3:50856398-50856417	Msa0297200:intron	35.0%
	TTCAAAAGTCTTCACCCAAT+AGG	-	chr2_3:50856453-50856472	Msa0297200:intron	35.0%
	CGAAAACAAGTAGAGGAATT+AGG	+	chr2_3:50856521-50856540	None:intergenic	35.0%
	ACATTGTCGAAAACAAGTAG+AGG	+	chr2_3:50856528-50856547	None:intergenic	35.0%
!!	CATTGGTTCAATATTCAGTC+CGG	-	chr2_3:50856690-50856709	Msa0297200:CDS	35.0%
!	GTTGTTGATCAGGATTGTTT+TGG	-	chr2_3:50856808-50856827	Msa0297200:intron	35.0%
	ATCACTTTCTATCCATTGGT+GGG	-	chr2_3:50856906-50856925	Msa0297200:intron	35.0%
	AAAACACAAAATCCCACCAA+TGG	+	chr2_3:50856921-50856940	None:intergenic	35.0%
	AAGAAACACAGAATAGACCA+TGG	+	chr2_3:50856946-50856965	None:intergenic	35.0%
	TGCCTCTTAATTAGTGACTA+AGG	-	chr2_3:50856982-50857001	Msa0297200:intron	35.0%
	GACTAAGGAAACACATAGAA+TGG	-	chr2_3:50856997-50857016	Msa0297200:intron	35.0%
	TAAGGAAACACATAGAATGG+AGG	-	chr2_3:50857000-50857019	Msa0297200:intron	35.0%
!!!	GCTTTTGTGCTTTAGGAATT+TGG	-	chr2_3:50857037-50857056	Msa0297200:intron	35.0%
	TTTACACCACTTGTACTATG+GGG	-	chr2_3:50857104-50857123	Msa0297200:CDS	35.0%
	TTTATACCCCATAGTACAAG+TGG	+	chr2_3:50857113-50857132	None:intergenic	35.0%
	CTTTCATTGGACAATGACTT+TGG	+	chr2_3:50857248-50857267	None:intergenic	35.0%
	AGCTGAAATTGCTCAAAACA+AGG	-	chr2_3:50855997-50856016	Msa0297200:three_prime_UTR	35.0%
	AGGTTAAACACTTGAGATTG+TGG	-	chr2_3:50856300-50856319	Msa0297200:intron	35.0%
	CTAGCAAATTGGCTATAACA+TGG	+	chr2_3:50856400-50856419	None:intergenic	35.0%
!	CATGTTATAGCCAATTTGCT+AGG	-	chr2_3:50856398-50856417	Msa0297200:intron	35.0%
	TTCAAAAGTCTTCACCCAAT+AGG	-	chr2_3:50856453-50856472	Msa0297200:intron	35.0%
	CGAAAACAAGTAGAGGAATT+AGG	+	chr2_3:50856521-50856540	None:intergenic	35.0%
	ACATTGTCGAAAACAAGTAG+AGG	+	chr2_3:50856528-50856547	None:intergenic	35.0%
!!	CATTGGTTCAATATTCAGTC+CGG	-	chr2_3:50856690-50856709	Msa0297200:CDS	35.0%
!	GTTGTTGATCAGGATTGTTT+TGG	-	chr2_3:50856808-50856827	Msa0297200:intron	35.0%
	ATCACTTTCTATCCATTGGT+GGG	-	chr2_3:50856906-50856925	Msa0297200:intron	35.0%
	AAAACACAAAATCCCACCAA+TGG	+	chr2_3:50856921-50856940	None:intergenic	35.0%
	AAGAAACACAGAATAGACCA+TGG	+	chr2_3:50856946-50856965	None:intergenic	35.0%
	TGCCTCTTAATTAGTGACTA+AGG	-	chr2_3:50856982-50857001	Msa0297200:intron	35.0%
	GACTAAGGAAACACATAGAA+TGG	-	chr2_3:50856997-50857016	Msa0297200:intron	35.0%
	TAAGGAAACACATAGAATGG+AGG	-	chr2_3:50857000-50857019	Msa0297200:intron	35.0%
!!!	GCTTTTGTGCTTTAGGAATT+TGG	-	chr2_3:50857037-50857056	Msa0297200:intron	35.0%
	TTTACACCACTTGTACTATG+GGG	-	chr2_3:50857104-50857123	Msa0297200:CDS	35.0%
	TTTATACCCCATAGTACAAG+TGG	+	chr2_3:50857113-50857132	None:intergenic	35.0%
	CTTTCATTGGACAATGACTT+TGG	+	chr2_3:50857248-50857267	None:intergenic	35.0%
	AGTGCTAGCTAAGAAAGAGA+AGG	+	chr2_3:50855853-50855872	None:intergenic	40.0%
	TCTCTTTCTTAGCTAGCACT+TGG	-	chr2_3:50855853-50855872	Msa0297200:three_prime_UTR	40.0%
	TCAGAAATGGCTAGAGAAGT+TGG	-	chr2_3:50855914-50855933	Msa0297200:three_prime_UTR	40.0%
	TTATCATGGATGTCACAGCT+GGG	-	chr2_3:50855960-50855979	Msa0297200:three_prime_UTR	40.0%
	GTGTAGAGATCCAAGTCATA+AGG	-	chr2_3:50856331-50856350	Msa0297200:intron	40.0%
!	AACATGAAGGCCTTATGACT+TGG	+	chr2_3:50856344-50856363	None:intergenic	40.0%
	AGTCATAAGGCCTTCATGTT+TGG	-	chr2_3:50856344-50856363	Msa0297200:intron	40.0%
	TGCAGCTAATCCAAACATGA+AGG	+	chr2_3:50856357-50856376	None:intergenic	40.0%
!!	GTTATAGCCAATTTGCTAGG+TGG	-	chr2_3:50856401-50856420	Msa0297200:intron	40.0%
!!	TGGCCATCCTCATTTTAACA+TGG	-	chr2_3:50856486-50856505	Msa0297200:intron	40.0%
	ACTATGAAACTGCACTGTCT+AGG	-	chr2_3:50856587-50856606	Msa0297200:intron	40.0%
	CTATGAAACTGCACTGTCTA+GGG	-	chr2_3:50856588-50856607	Msa0297200:intron	40.0%
	AGCAGTTGAACGGTTTAAAG+AGG	-	chr2_3:50856646-50856665	Msa0297200:CDS	40.0%
	CGGACTGAATATTGAACCAA+TGG	+	chr2_3:50856692-50856711	None:intergenic	40.0%
!!!	ATCAGGATTGTTTTGGCTGT+TGG	-	chr2_3:50856815-50856834	Msa0297200:intron	40.0%
!!	GATTGAGCATGTTGGTGATA+GGG	-	chr2_3:50856837-50856856	Msa0297200:intron	40.0%
	AACAGATCAAGTGGTACTTG+TGG	-	chr2_3:50856872-50856891	Msa0297200:intron	40.0%
	GACCATCACTTTCTATCCAT+TGG	-	chr2_3:50856902-50856921	Msa0297200:intron	40.0%
	CACCAATGGATAGAAAGTGA+TGG	+	chr2_3:50856907-50856926	None:intergenic	40.0%
	CATCACTTTCTATCCATTGG+TGG	-	chr2_3:50856905-50856924	Msa0297200:intron	40.0%
!	GGGATTTTGTGTTTTGTCCA+TGG	-	chr2_3:50856926-50856945	Msa0297200:intron	40.0%
	AGTCACTAATTAAGAGGCAG+TGG	+	chr2_3:50856981-50857000	None:intergenic	40.0%
!!	TGCTCTTGCTTTTGTGCTTT+AGG	-	chr2_3:50857030-50857049	Msa0297200:intron	40.0%
!!	ATGTCAGTGGATTAGTGGAT+AGG	+	chr2_3:50857170-50857189	None:intergenic	40.0%
!!	TACACATGTCAGTGGATTAG+TGG	+	chr2_3:50857175-50857194	None:intergenic	40.0%
	AGTGCTAGCTAAGAAAGAGA+AGG	+	chr2_3:50855853-50855872	None:intergenic	40.0%
	TCTCTTTCTTAGCTAGCACT+TGG	-	chr2_3:50855853-50855872	Msa0297200:three_prime_UTR	40.0%
	TCAGAAATGGCTAGAGAAGT+TGG	-	chr2_3:50855914-50855933	Msa0297200:three_prime_UTR	40.0%
	TTATCATGGATGTCACAGCT+GGG	-	chr2_3:50855960-50855979	Msa0297200:three_prime_UTR	40.0%
	GTGTAGAGATCCAAGTCATA+AGG	-	chr2_3:50856331-50856350	Msa0297200:intron	40.0%
!	AACATGAAGGCCTTATGACT+TGG	+	chr2_3:50856344-50856363	None:intergenic	40.0%
	AGTCATAAGGCCTTCATGTT+TGG	-	chr2_3:50856344-50856363	Msa0297200:intron	40.0%
	TGCAGCTAATCCAAACATGA+AGG	+	chr2_3:50856357-50856376	None:intergenic	40.0%
!!	GTTATAGCCAATTTGCTAGG+TGG	-	chr2_3:50856401-50856420	Msa0297200:intron	40.0%
!!	TGGCCATCCTCATTTTAACA+TGG	-	chr2_3:50856486-50856505	Msa0297200:intron	40.0%
	ACTATGAAACTGCACTGTCT+AGG	-	chr2_3:50856587-50856606	Msa0297200:intron	40.0%
	CTATGAAACTGCACTGTCTA+GGG	-	chr2_3:50856588-50856607	Msa0297200:intron	40.0%
	AGCAGTTGAACGGTTTAAAG+AGG	-	chr2_3:50856646-50856665	Msa0297200:CDS	40.0%
	CGGACTGAATATTGAACCAA+TGG	+	chr2_3:50856692-50856711	None:intergenic	40.0%
!!!	ATCAGGATTGTTTTGGCTGT+TGG	-	chr2_3:50856815-50856834	Msa0297200:intron	40.0%
!!	GATTGAGCATGTTGGTGATA+GGG	-	chr2_3:50856837-50856856	Msa0297200:intron	40.0%
	AACAGATCAAGTGGTACTTG+TGG	-	chr2_3:50856872-50856891	Msa0297200:intron	40.0%
	GACCATCACTTTCTATCCAT+TGG	-	chr2_3:50856902-50856921	Msa0297200:intron	40.0%
	CACCAATGGATAGAAAGTGA+TGG	+	chr2_3:50856907-50856926	None:intergenic	40.0%
	CATCACTTTCTATCCATTGG+TGG	-	chr2_3:50856905-50856924	Msa0297200:intron	40.0%
!	GGGATTTTGTGTTTTGTCCA+TGG	-	chr2_3:50856926-50856945	Msa0297200:intron	40.0%
	AGTCACTAATTAAGAGGCAG+TGG	+	chr2_3:50856981-50857000	None:intergenic	40.0%
!!	TGCTCTTGCTTTTGTGCTTT+AGG	-	chr2_3:50857030-50857049	Msa0297200:intron	40.0%
!!	ATGTCAGTGGATTAGTGGAT+AGG	+	chr2_3:50857170-50857189	None:intergenic	40.0%
!!	TACACATGTCAGTGGATTAG+TGG	+	chr2_3:50857175-50857194	None:intergenic	40.0%
	GTTATCATGGATGTCACAGC+TGG	-	chr2_3:50855959-50855978	Msa0297200:three_prime_UTR	45.0%
	ACCCAATAGGCAACTCTCAA+TGG	-	chr2_3:50856466-50856485	Msa0297200:intron	45.0%
	GCCATTGAGAGTTGCCTATT+GGG	+	chr2_3:50856470-50856489	None:intergenic	45.0%
!	AAACTGCACTGTCTAGGGTT+TGG	-	chr2_3:50856593-50856612	Msa0297200:intron	45.0%
!!	GGATTGAGCATGTTGGTGAT+AGG	-	chr2_3:50856836-50856855	Msa0297200:intron	45.0%
	CACAAAAGCAAGAGCAGAAG+TGG	+	chr2_3:50857026-50857045	None:intergenic	45.0%
	GTTATCATGGATGTCACAGC+TGG	-	chr2_3:50855959-50855978	Msa0297200:three_prime_UTR	45.0%
	ACCCAATAGGCAACTCTCAA+TGG	-	chr2_3:50856466-50856485	Msa0297200:intron	45.0%
	GCCATTGAGAGTTGCCTATT+GGG	+	chr2_3:50856470-50856489	None:intergenic	45.0%
!	AAACTGCACTGTCTAGGGTT+TGG	-	chr2_3:50856593-50856612	Msa0297200:intron	45.0%
!!	GGATTGAGCATGTTGGTGAT+AGG	-	chr2_3:50856836-50856855	Msa0297200:intron	45.0%
	CACAAAAGCAAGAGCAGAAG+TGG	+	chr2_3:50857026-50857045	None:intergenic	45.0%
	GATGTCACAGCTGGGATTCT+TGG	-	chr2_3:50855968-50855987	Msa0297200:three_prime_UTR	50.0%
	GGCCATTGAGAGTTGCCTAT+TGG	+	chr2_3:50856471-50856490	None:intergenic	50.0%
	GGCTGTTGGATTGAGCATGT+TGG	-	chr2_3:50856829-50856848	Msa0297200:intron	50.0%
	GCACACACTACACATGTCAG+TGG	+	chr2_3:50857183-50857202	None:intergenic	50.0%
	GATGTCACAGCTGGGATTCT+TGG	-	chr2_3:50855968-50855987	Msa0297200:three_prime_UTR	50.0%
	GGCCATTGAGAGTTGCCTAT+TGG	+	chr2_3:50856471-50856490	None:intergenic	50.0%
	GGCTGTTGGATTGAGCATGT+TGG	-	chr2_3:50856829-50856848	Msa0297200:intron	50.0%
	GCACACACTACACATGTCAG+TGG	+	chr2_3:50857183-50857202	None:intergenic	50.0%
!!	GCCAATTTGCTAGGTGGCTG+CGG	-	chr2_3:50856407-50856426	Msa0297200:intron	55.0%
	ACCGCAGCCACCTAGCAAAT+TGG	+	chr2_3:50856411-50856430	None:intergenic	55.0%
!!	GCCAATTTGCTAGGTGGCTG+CGG	-	chr2_3:50856407-50856426	Msa0297200:intron	55.0%
	ACCGCAGCCACCTAGCAAAT+TGG	+	chr2_3:50856411-50856430	None:intergenic	55.0%

Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	50855758	50857354	50855758	ID=Msa0297200;Name=Msa0297200
chr2_3	mRNA	50855758	50857354	50855758	ID=Msa0297200-mRNA-1;Parent=Msa0297200;Name=Msa0297200-mRNA-1;_AED=0.04;_eAED=0.04;_QI=162\|1\|1\|1\|1\|1\|3\|363\|158
chr2_3	exon	50855758	50856292	50855758	ID=Msa0297200-mRNA-1:exon:16004;Parent=Msa0297200-mRNA-1
chr2_3	exon	50856605	50856810	50856605	ID=Msa0297200-mRNA-1:exon:16003;Parent=Msa0297200-mRNA-1
chr2_3	exon	50857094	50857354	50857094	ID=Msa0297200-mRNA-1:exon:16002;Parent=Msa0297200-mRNA-1
chr2_3	five_prime_UTR	50857193	50857354	50857193	ID=Msa0297200-mRNA-1:five_prime_utr;Parent=Msa0297200-mRNA-1
chr2_3	CDS	50857094	50857192	50857094	ID=Msa0297200-mRNA-1:cds;Parent=Msa0297200-mRNA-1
chr2_3	CDS	50856605	50856810	50856605	ID=Msa0297200-mRNA-1:cds;Parent=Msa0297200-mRNA-1
chr2_3	CDS	50856121	50856292	50856121	ID=Msa0297200-mRNA-1:cds;Parent=Msa0297200-mRNA-1
chr2_3	three_prime_UTR	50855758	50856120	50855758	ID=Msa0297200-mRNA-1:three_prime_utr;Parent=Msa0297200-mRNA-1

Gene Sequence

>Msa0297200

ATGGCTAGAGAAGTTGGCATATTTTTATGTCTCTTGATTGTTATCATGGATGTCACAGCTGGGATTCTTGGCATCGAAGCTGAAATTGCTCAAAACAAGGTTAAACACTTGAGATTGTGGATATTTGAGTGTAGAGATCCAAGTCATAAGGCCTTCATGTTTGGATTAGCTGCATCAATACTTTTGTCTCTAGCCCATGTTATAGCCAATTTGCTAGGTGGCTGCGGTTGTTTTTGTCTTGAACAAGACATTCAAAAGTCTTCACCCAATAGGCAACTCTCAATGGCCATCCTCATTTTAACATGGATTGTTTTGGCTGTTGGATTGAGCATGTTGGTGATAGGGACTAAAACAAACAACAGATCAAGTGGTACTTGTGGTTTCACAGACCATCACTTTCTATCCATTGGTGGGATTTTGTGTTTTGTCCATGGTCTATTCTGTGTTTCTTATTACGTTTCTGCCACTGCCTCTTAA

Protein sequence

>Msa0297200

MAREVGIFLCLLIVIMDVTAGILGIEAEIAQNKVKHLRLWIFECRDPSHKAFMFGLAASILLSLAHVIANLLGGCGCFCLEQDIQKSSPNRQLSMAILILTWIVLAVGLSMLVIGTKTNNRSSGTCGFTDHHFLSIGGILCFVHGLFCVSYYVSATAS*