Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819030 | AES99695.1 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819030 | G7K7B5 | 98.574 | 561 | 8 | 0 | 1 | 561 | 1 | 561 | 0.0 | 1158 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0012240 | Msa0819030 | -0.807219 | 5.624893e-50 | -8.615850e-47 |
Msa0017510 | Msa0819030 | -0.800269 | 1.560151e-48 | -8.615850e-47 |
Msa0025730 | Msa0819030 | -0.808036 | 3.773262e-50 | -8.615850e-47 |
Msa0027260 | Msa0819030 | -0.819171 | 1.336042e-52 | -8.615850e-47 |
Msa0030380 | Msa0819030 | -0.816235 | 6.139966e-52 | -8.615850e-47 |
Msa0032580 | Msa0819030 | -0.807988 | 3.861283e-50 | -8.615850e-47 |
Msa0043660 | Msa0819030 | -0.806537 | 7.838098e-50 | -8.615850e-47 |
Msa0058300 | Msa0819030 | -0.803659 | 3.136713e-49 | -8.615850e-47 |
Msa0074320 | Msa0819030 | -0.807916 | 4.001182e-50 | -8.615850e-47 |
Msa0094470 | Msa0819030 | -0.800266 | 1.562031e-48 | -8.615850e-47 |
Msa0098140 | Msa0819030 | 0.802672 | 5.020051e-49 | -8.615850e-47 |
Msa0100740 | Msa0819030 | -0.806984 | 6.306146e-50 | -8.615850e-47 |
Msa0103000 | Msa0819030 | -0.818201 | 2.217423e-52 | -8.615850e-47 |
Msa0110970 | Msa0819030 | -0.804384 | 2.217038e-49 | -8.615850e-47 |
Msa0608320 | Msa0819030 | -0.804881 | 1.745812e-49 | -8.615850e-47 |
Msa0621120 | Msa0819030 | -0.808642 | 2.801707e-50 | -8.615850e-47 |
Msa0623700 | Msa0819030 | -0.814997 | 1.158364e-51 | -8.615850e-47 |
Msa0647500 | Msa0819030 | -0.809063 | 2.277474e-50 | -8.615850e-47 |
Msa0654760 | Msa0819030 | 0.834522 | 2.854326e-56 | -8.615850e-47 |
Msa0677290 | Msa0819030 | -0.834695 | 2.583035e-56 | -8.615850e-47 |
Msa0692080 | Msa0819030 | -0.809203 | 2.124876e-50 | -8.615850e-47 |
Msa0697670 | Msa0819030 | -0.810362 | 1.196841e-50 | -8.615850e-47 |
Msa0703230 | Msa0819030 | -0.817233 | 3.666877e-52 | -8.615850e-47 |
Msa0709500 | Msa0819030 | -0.824235 | 9.010767e-54 | -8.615850e-47 |
Msa0717920 | Msa0819030 | 0.802566 | 5.278736e-49 | -8.615850e-47 |
Msa0734660 | Msa0819030 | -0.824299 | 8.700832e-54 | -8.615850e-47 |
Msa0734750 | Msa0819030 | -0.800078 | 1.705821e-48 | -8.615850e-47 |
Msa0738630 | Msa0819030 | 0.992705 | 6.327490e-195 | -8.615850e-47 |
Msa0776220 | Msa0819030 | -0.820904 | 5.361262e-53 | -8.615850e-47 |
Msa0783760 | Msa0819030 | 0.994432 | 3.331477e-207 | -8.615850e-47 |
Msa0790850 | Msa0819030 | -0.827572 | 1.452618e-54 | -8.615850e-47 |
Msa0813320 | Msa0819030 | 0.808415 | 3.131973e-50 | -8.615850e-47 |
Msa0813670 | Msa0819030 | -0.828198 | 1.027059e-54 | -8.615850e-47 |
Msa0813720 | Msa0819030 | -0.821162 | 4.673787e-53 | -8.615850e-47 |
Msa0818980 | Msa0819030 | 0.994756 | 6.293157e-210 | -8.615850e-47 |
Msa0819030 | Msa0836660 | 0.827531 | 1.485922e-54 | -8.615850e-47 |
Msa0819030 | Msa0847080 | -0.803778 | 2.963413e-49 | -8.615850e-47 |
Msa0819030 | Msa0854120 | -0.826541 | 2.563556e-54 | -8.615850e-47 |
Msa0819030 | Msa0867050 | 0.815245 | 1.020353e-51 | -8.615850e-47 |
Msa0819030 | Msa0902760 | -0.843940 | 1.028385e-58 | -8.615850e-47 |
Msa0819030 | Msa0926460 | -0.821397 | 4.125859e-53 | -8.615850e-47 |
Msa0819030 | Msa0944190 | -0.800058 | 1.722334e-48 | -8.615850e-47 |
Msa0819030 | Msa0965860 | -0.809995 | 1.436207e-50 | -8.615850e-47 |
Msa0819030 | Msa0967650 | 0.815321 | 9.816432e-52 | -8.615850e-47 |
Msa0819030 | Msa0968590 | -0.809983 | 1.444623e-50 | -8.615850e-47 |
Msa0819030 | Msa1000690 | -0.808831 | 2.553029e-50 | -8.615850e-47 |
Msa0819030 | Msa1003310 | -0.810191 | 1.302871e-50 | -8.615850e-47 |
Msa0819030 | Msa1007610 | 0.805987 | 1.023692e-49 | -8.615850e-47 |
Msa0819030 | Msa1013400 | -0.851905 | 6.544082e-61 | -8.615850e-47 |
Msa0819030 | Msa1014500 | -0.823846 | 1.111738e-53 | -8.615850e-47 |
Msa0819030 | Msa1019260 | -0.800778 | 1.228654e-48 | -8.615850e-47 |
Msa0819030 | Msa1040400 | -0.833082 | 6.541161e-56 | -8.615850e-47 |
Msa0819030 | Msa1050210 | -0.803044 | 4.206713e-49 | -8.615850e-47 |
Msa0819030 | Msa1066490 | -0.833535 | 5.044187e-56 | -8.615850e-47 |
Msa0819030 | Msa1081150 | -0.831401 | 1.704312e-55 | -8.615850e-47 |
Msa0819030 | Msa1093530 | -0.842710 | 2.190194e-58 | -8.615850e-47 |
Msa0819030 | Msa1104140 | -0.829893 | 3.989966e-55 | -8.615850e-47 |
Msa0819030 | Msa1104210 | -0.803799 | 2.933431e-49 | -8.615850e-47 |
Msa0819030 | Msa1125760 | -0.827608 | 1.424320e-54 | -8.615850e-47 |
Msa0819030 | Msa1126510 | -0.841657 | 4.160951e-58 | -8.615850e-47 |
Msa0819030 | Msa1126770 | -0.802728 | 4.887539e-49 | -8.615850e-47 |
Msa0819030 | Msa1134110 | -0.818128 | 2.303775e-52 | -8.615850e-47 |
Msa0819030 | Msa1155520 | -0.814485 | 1.504360e-51 | -8.615850e-47 |
Msa0819030 | Msa1165870 | -0.802227 | 6.198974e-49 | -8.615850e-47 |
Msa0819030 | Msa1166010 | -0.805156 | 1.529591e-49 | -8.615850e-47 |
Msa0819030 | Msa1166860 | -0.848336 | 6.541682e-60 | -8.615850e-47 |
Msa0819030 | Msa1171360 | -0.824848 | 6.461953e-54 | -8.615850e-47 |
Msa0819030 | Msa1181850 | -0.833922 | 4.037657e-56 | -8.615850e-47 |
Msa0819030 | Msa1181860 | -0.829103 | 6.207186e-55 | -8.615850e-47 |
Msa0819030 | Msa1187840 | -0.822165 | 2.741339e-53 | -8.615850e-47 |
Msa0819030 | Msa1193070 | -0.817340 | 3.470038e-52 | -8.615850e-47 |
Msa0819030 | Msa1204250 | -0.816152 | 6.406528e-52 | -8.615850e-47 |
Msa0819030 | Msa1207270 | -0.834193 | 3.453703e-56 | -8.615850e-47 |
Msa0819030 | Msa1211890 | -0.809837 | 1.553096e-50 | -8.615850e-47 |
Msa0819030 | Msa1218600 | -0.834415 | 3.036609e-56 | -8.615850e-47 |
Msa0819030 | Msa1254610 | -0.804268 | 2.343764e-49 | -8.615850e-47 |
Msa0819030 | Msa1255040 | 0.815930 | 7.180888e-52 | -8.615850e-47 |
Msa0819030 | Msa1257510 | -0.822651 | 2.113995e-53 | -8.615850e-47 |
Msa0819030 | Msa1269300 | -0.805306 | 1.422957e-49 | -8.615850e-47 |
Msa0819030 | Msa1275360 | -0.810424 | 1.160671e-50 | -8.615850e-47 |
Msa0819030 | Msa1283170 | -0.827933 | 1.189647e-54 | -8.615850e-47 |
Msa0819030 | Msa1295490 | 0.805964 | 1.034992e-49 | -8.615850e-47 |
Msa0819030 | Msa1316780 | -0.819906 | 9.080173e-53 | -8.615850e-47 |
Msa0819030 | Msa1316830 | -0.820884 | 5.418642e-53 | -8.615850e-47 |
Msa0819030 | Msa1333110 | -0.813666 | 2.280587e-51 | -8.615850e-47 |
Msa0819030 | Msa1355970 | -0.806841 | 6.761154e-50 | -8.615850e-47 |
Msa0819030 | Msa1356440 | -0.804700 | 1.904880e-49 | -8.615850e-47 |
Msa0819030 | Msa1363330 | -0.820162 | 7.934108e-53 | -8.615850e-47 |
Msa0819030 | Msa1374120 | -0.803914 | 2.776940e-49 | -8.615850e-47 |
Msa0819030 | Msa1379760 | -0.824805 | 6.616528e-54 | -8.615850e-47 |
Msa0819030 | Msa1386600 | -0.819885 | 9.181315e-53 | -8.615850e-47 |
Msa0819030 | Msa1387420 | -0.805576 | 1.248592e-49 | -8.615850e-47 |
Msa0819030 | Msa1392200 | -0.822166 | 2.739547e-53 | -8.615850e-47 |
Msa0819030 | Msa1396750 | 0.809721 | 1.644815e-50 | -8.615850e-47 |
Msa0819030 | Msa1397810 | -0.814618 | 1.405613e-51 | -8.615850e-47 |
Msa0819030 | Msa1410430 | 0.816102 | 6.575603e-52 | -8.615850e-47 |
Msa0819030 | Msa1417870 | -0.816196 | 6.263785e-52 | -8.615850e-47 |
Msa0819030 | Msa1448690 | -0.827812 | 1.272018e-54 | -8.615850e-47 |
Msa0819030 | Msa1450280 | -0.816737 | 4.739268e-52 | -8.615850e-47 |
Msa0819030 | Msa1453620 | -0.817730 | 2.833638e-52 | -8.615850e-47 |
Msa0819030 | Msa1457920 | -0.805156 | 1.529340e-49 | -8.615850e-47 |
Msa0127310 | Msa0819030 | -0.809181 | 2.148164e-50 | -8.615850e-47 |
Msa0128860 | Msa0819030 | -0.820727 | 5.888183e-53 | -8.615850e-47 |
Msa0137550 | Msa0819030 | -0.809285 | 2.041087e-50 | -8.615850e-47 |
Msa0140570 | Msa0819030 | -0.817339 | 3.470552e-52 | -8.615850e-47 |
Msa0147560 | Msa0819030 | -0.810887 | 9.216796e-51 | -8.615850e-47 |
Msa0172970 | Msa0819030 | -0.802473 | 5.516973e-49 | -8.615850e-47 |
Msa0173740 | Msa0819030 | -0.820107 | 8.166760e-53 | -8.615850e-47 |
Msa0173820 | Msa0819030 | -0.824269 | 8.844087e-54 | -8.615850e-47 |
Msa0173830 | Msa0819030 | -0.829298 | 5.566250e-55 | -8.615850e-47 |
Msa0174730 | Msa0819030 | -0.822022 | 2.957756e-53 | -8.615850e-47 |
Msa0186890 | Msa0819030 | -0.819828 | 9.460836e-53 | -8.615850e-47 |
Msa0187690 | Msa0819030 | -0.803991 | 2.676421e-49 | -8.615850e-47 |
Msa0187930 | Msa0819030 | -0.822399 | 2.418432e-53 | -8.615850e-47 |
Msa0193120 | Msa0819030 | -0.821752 | 3.415958e-53 | -8.615850e-47 |
Msa0194540 | Msa0819030 | -0.818289 | 2.118908e-52 | -8.615850e-47 |
Msa0199690 | Msa0819030 | -0.815584 | 8.576851e-52 | -8.615850e-47 |
Msa0199880 | Msa0819030 | -0.825665 | 4.140910e-54 | -8.615850e-47 |
Msa0220720 | Msa0819030 | -0.816195 | 6.268150e-52 | -8.615850e-47 |
Msa0238070 | Msa0819030 | 0.846125 | 2.643898e-59 | -8.615850e-47 |
Msa0238250 | Msa0819030 | 0.801494 | 8.767212e-49 | -8.615850e-47 |
Msa0366890 | Msa0819030 | -0.822131 | 2.791621e-53 | -8.615850e-47 |
Msa0369050 | Msa0819030 | -0.805057 | 1.603731e-49 | -8.615850e-47 |
Msa0369220 | Msa0819030 | -0.809411 | 1.917184e-50 | -8.615850e-47 |
Msa0369450 | Msa0819030 | -0.801141 | 1.035901e-48 | -8.615850e-47 |
Msa0376450 | Msa0819030 | 0.816064 | 6.704631e-52 | -8.615850e-47 |
Msa0385580 | Msa0819030 | -0.811780 | 5.897841e-51 | -8.615850e-47 |
Msa0395960 | Msa0819030 | -0.824228 | 9.044310e-54 | -8.615850e-47 |
Msa0398950 | Msa0819030 | -0.819162 | 1.342169e-52 | -8.615850e-47 |
Msa0402650 | Msa0819030 | -0.806607 | 7.578916e-50 | -8.615850e-47 |
Msa0414800 | Msa0819030 | -0.800041 | 1.735789e-48 | -8.615850e-47 |
Msa0425220 | Msa0819030 | -0.808142 | 3.581588e-50 | -8.615850e-47 |
Msa0425940 | Msa0819030 | -0.801230 | 9.931731e-49 | -8.615850e-47 |
Msa0430620 | Msa0819030 | -0.803932 | 2.753609e-49 | -8.615850e-47 |
Msa0436050 | Msa0819030 | -0.818663 | 1.742516e-52 | -8.615850e-47 |
Msa0443500 | Msa0819030 | -0.805557 | 1.260518e-49 | -8.615850e-47 |
Msa0458060 | Msa0819030 | -0.803229 | 3.851811e-49 | -8.615850e-47 |
Msa0465790 | Msa0819030 | -0.824314 | 8.631566e-54 | -8.615850e-47 |
Msa0471440 | Msa0819030 | -0.833003 | 6.842229e-56 | -8.615850e-47 |
Msa0471720 | Msa0819030 | 0.813851 | 2.076217e-51 | -8.615850e-47 |
Msa0242230 | Msa0819030 | -0.821651 | 3.604929e-53 | -8.615850e-47 |
Msa0242410 | Msa0819030 | -0.809337 | 1.989296e-50 | -8.615850e-47 |
Msa0244780 | Msa0819030 | -0.824049 | 9.963351e-54 | -8.615850e-47 |
Msa0262310 | Msa0819030 | -0.816560 | 5.191537e-52 | -8.615850e-47 |
Msa0264570 | Msa0819030 | -0.826600 | 2.481274e-54 | -8.615850e-47 |
Msa0268130 | Msa0819030 | -0.831549 | 1.567580e-55 | -8.615850e-47 |
Msa0280610 | Msa0819030 | -0.837644 | 4.603625e-57 | -8.615850e-47 |
Msa0298990 | Msa0819030 | -0.830324 | 3.131757e-55 | -8.615850e-47 |
Msa0299870 | Msa0819030 | -0.801630 | 8.224270e-49 | -8.615850e-47 |
Msa0337240 | Msa0819030 | -0.815242 | 1.021821e-51 | -8.615850e-47 |
Msa0337650 | Msa0819030 | -0.813949 | 1.975529e-51 | -8.615850e-47 |
Msa0349060 | Msa0819030 | -0.805852 | 1.092918e-49 | -8.615850e-47 |
Msa0358170 | Msa0819030 | -0.826889 | 2.117453e-54 | -8.615850e-47 |
Msa0483860 | Msa0819030 | -0.831825 | 1.340355e-55 | -8.615850e-47 |
Msa0491020 | Msa0819030 | -0.818885 | 1.551687e-52 | -8.615850e-47 |
Msa0497490 | Msa0819030 | -0.814512 | 1.483647e-51 | -8.615850e-47 |
Msa0504020 | Msa0819030 | -0.802509 | 5.424230e-49 | -8.615850e-47 |
Msa0508590 | Msa0819030 | -0.814719 | 1.335222e-51 | -8.615850e-47 |
Msa0508630 | Msa0819030 | -0.808063 | 3.723673e-50 | -8.615850e-47 |
Msa0510350 | Msa0819030 | -0.801691 | 7.990478e-49 | -8.615850e-47 |
Msa0516510 | Msa0819030 | 0.808847 | 2.532457e-50 | -8.615850e-47 |
Msa0526540 | Msa0819030 | -0.817240 | 3.653560e-52 | -8.615850e-47 |
Msa0541860 | Msa0819030 | -0.821330 | 4.276830e-53 | -8.615850e-47 |
Msa0561540 | Msa0819030 | 0.824214 | 9.113017e-54 | -8.615850e-47 |
Msa0576940 | Msa0819030 | -0.821860 | 3.225442e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819030 | MtrunA17_Chr5g0437931 | 98.417 | 379 | 6 | 0 | 1 | 379 | 1 | 379 | 0.0 | 781 |
Msa0819030 | MtrunA17_Chr3g0114311 | 63.186 | 565 | 141 | 6 | 1 | 561 | 1 | 502 | 0.0 | 653 |
Msa0819030 | MtrunA17_Chr3g0114321 | 66.667 | 483 | 133 | 5 | 1 | 479 | 1 | 459 | 0.0 | 632 |
Msa0819030 | MtrunA17_Chr5g0437921 | 98.684 | 152 | 2 | 0 | 410 | 561 | 1 | 152 | 2.39e-106 | 315 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0819030 | AT3G10980.1 | 59.298 | 570 | 206 | 10 | 5 | 560 | 6 | 563 | 0.0 | 631 |
Msa0819030 | AT5G05350.1 | 56.929 | 534 | 199 | 7 | 30 | 560 | 20 | 525 | 0.0 | 598 |
Find 117 sgRNAs with CRISPR-Local
Find 272 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAGTTCTAGCAGTTTCTTTA+TGG | 0.127897 | 5_3:-55125592 | Msa0819030:CDS |
ATCTTATGCGTTGCTGTTTC+AGG | 0.172175 | 5_3:-55126755 | Msa0819030:CDS |
CGCATAAGATCCACGCAAAA+AGG | 0.191675 | 5_3:+55126768 | None:intergenic |
CTAAGTTTGGCGATATCTTT+TGG | 0.228804 | 5_3:+55126557 | None:intergenic |
CTAGGTAAAGATTATGATTC+TGG | 0.262677 | 5_3:-55126314 | Msa0819030:CDS |
GCATTCCTTGCCGACTTCTT+TGG | 0.266606 | 5_3:+55126686 | None:intergenic |
TTTCGGCAAGCCTGCGGTTT+CGG | 0.267613 | 5_3:-55125844 | Msa0819030:CDS |
TTGAAGAAGTTGATCCTATT+AGG | 0.274814 | 5_3:+55126977 | None:intergenic |
AATTATACCTCTTTCTCATT+TGG | 0.282202 | 5_3:+55125886 | None:intergenic |
AGTGGCAAGACGCTTGAATT+TGG | 0.310045 | 5_3:+55126937 | None:intergenic |
CACTTTGGCTATTCTGTTGT+TGG | 0.321220 | 5_3:-55125815 | Msa0819030:CDS |
GCAGTACTCCTTTCTAAGTT+TGG | 0.322615 | 5_3:+55126544 | None:intergenic |
TTGTGCATTTGGTTGGAATA+TGG | 0.330037 | 5_3:-55126093 | Msa0819030:CDS |
CCTACTTATGACTTCTGTTT+CGG | 0.336304 | 5_3:-55125861 | Msa0819030:CDS |
GTGGAGGAATACTTGACATT+TGG | 0.338866 | 5_3:-55126157 | Msa0819030:CDS |
TCGAGAACTTGAAATATCTA+TGG | 0.347292 | 5_3:+55127060 | None:intergenic |
AGGAGAACTTGTCCCAGATT+TGG | 0.348843 | 5_3:+55125662 | None:intergenic |
GGTGTGTCATCAACCAAATC+TGG | 0.354088 | 5_3:-55125675 | Msa0819030:CDS |
ATTGAGGAATGTAACAATAA+TGG | 0.360036 | 5_3:-55127106 | Msa0819030:CDS |
CATTGAGTGCTATTCCTAAT+AGG | 0.364914 | 5_3:-55126991 | Msa0819030:CDS |
ACTTCATAACATAATGGTTT+CGG | 0.365084 | 5_3:-55127152 | None:intergenic |
ATGGTTTCGGTTGATAATAA+TGG | 0.365993 | 5_3:-55127139 | Msa0819030:CDS |
ATCGGTGCACCTGCAATTGC+TGG | 0.371089 | 5_3:-55126359 | Msa0819030:CDS |
CACTTTGTGGTCTAAACTTA+GGG | 0.372572 | 5_3:-55126436 | Msa0819030:CDS |
GCACTTTGTGGTCTAAACTT+AGG | 0.372663 | 5_3:-55126437 | Msa0819030:CDS |
AGGATCAACTTCTTCAAAAT+CGG | 0.383821 | 5_3:-55126971 | Msa0819030:CDS |
AAGAAACTGCTAGAACTTAG+AGG | 0.389392 | 5_3:+55125597 | None:intergenic |
TTTGCTCAATATGCACTTTG+TGG | 0.392887 | 5_3:-55126449 | Msa0819030:CDS |
AGATGACAATAGAATGGATT+AGG | 0.399686 | 5_3:-55126808 | Msa0819030:CDS |
CTTTGTATCACCGGCGGAGT+TGG | 0.401446 | 5_3:+55125489 | None:intergenic |
TGGAGGAATACTTGACATTT+GGG | 0.407333 | 5_3:-55126156 | Msa0819030:CDS |
CTTGACGGTTTGAAAGTAGA+AGG | 0.422675 | 5_3:+55125621 | None:intergenic |
TTTATCATCTACAATATGAT+AGG | 0.429440 | 5_3:+55125758 | None:intergenic |
GAGCGCCCGGCCATCGGTGT+TGG | 0.439028 | 5_3:-55126401 | Msa0819030:CDS |
GCCAAGATGAAAATCCAAAA+GGG | 0.440423 | 5_3:+55126008 | None:intergenic |
ATATTGAGGATGACACTGTT+AGG | 0.445757 | 5_3:-55125977 | Msa0819030:CDS |
CTTGCTCAAGAAATGCGAAC+GGG | 0.448066 | 5_3:-55125786 | Msa0819030:CDS |
GTATATAGACCAGCAATTGC+AGG | 0.456063 | 5_3:+55126350 | None:intergenic |
AGGCAATGTCTAGTAGGTGC+TGG | 0.460261 | 5_3:-55125957 | Msa0819030:CDS |
ACAAGATGGTAGAATAACTT+TGG | 0.464879 | 5_3:+55126599 | None:intergenic |
AGAAAGGAGTACTGCAAGAA+TGG | 0.467535 | 5_3:-55126536 | Msa0819030:CDS |
AATATGGAGAGACTTGGCTT+TGG | 0.469184 | 5_3:-55126077 | Msa0819030:CDS |
CTTGGCTGCTGTTAATATTG+AGG | 0.476409 | 5_3:-55125991 | Msa0819030:CDS |
CTAGAACTTAGAGGACTTGA+CGG | 0.477113 | 5_3:+55125606 | None:intergenic |
ATCCTGTTCCTTGTCATGAC+TGG | 0.479597 | 5_3:-55126728 | Msa0819030:CDS |
TGTATCACCGGCGGAGTTGG+TGG | 0.481477 | 5_3:+55125492 | None:intergenic |
AATCTTTACCTAGAGGACTA+AGG | 0.482009 | 5_3:+55126324 | None:intergenic |
TCGCGACGCAGAGGTGAAAT+CGG | 0.484106 | 5_3:+55125699 | None:intergenic |
TCATGAATGGAAACACATAA+TGG | 0.490549 | 5_3:-55126501 | Msa0819030:CDS |
TACCAGTCATGACAAGGAAC+AGG | 0.492780 | 5_3:+55126726 | None:intergenic |
GAACTTATAAGCCTCATGAA+TGG | 0.495861 | 5_3:-55126514 | Msa0819030:CDS |
CATATTCCAACACCGATGGC+CGG | 0.496400 | 5_3:+55126395 | None:intergenic |
TGAAGAAGATGACAATAGAA+TGG | 0.501131 | 5_3:-55126814 | Msa0819030:CDS |
AGATATCGCCAAACTTAGAA+AGG | 0.504835 | 5_3:-55126552 | Msa0819030:CDS |
ACGGAAGATAGTGGACCATC+TGG | 0.504935 | 5_3:+55125558 | None:intergenic |
GGAGATTCTCTTTGTATCAC+CGG | 0.509159 | 5_3:+55125480 | None:intergenic |
GGAGGATCCAAATGAGAAAG+AGG | 0.509367 | 5_3:-55125893 | Msa0819030:CDS |
AGTATTCCTCCACTCCACTT+TGG | 0.512153 | 5_3:+55126167 | None:intergenic |
ATATTCCAACACCGATGGCC+GGG | 0.512263 | 5_3:+55126396 | None:intergenic |
AGCCAAGATGAAAATCCAAA+AGG | 0.513987 | 5_3:+55126007 | None:intergenic |
TATACAATCCTTAGTCCTCT+AGG | 0.515282 | 5_3:-55126332 | Msa0819030:CDS |
TCTGGGACAAGTTCTCCTCT+TGG | 0.516682 | 5_3:-55125657 | Msa0819030:CDS |
GGAATAGCACTCAATGTGCT+CGG | 0.531235 | 5_3:+55126998 | None:intergenic |
GGTTGGAATATGGAGAGACT+TGG | 0.540609 | 5_3:-55126083 | Msa0819030:CDS |
CGGTTTCGGACTGCACACTT+TGG | 0.541886 | 5_3:-55125830 | Msa0819030:CDS |
ATCTTGTACTTCTGTGCCGA+TGG | 0.543050 | 5_3:-55126583 | Msa0819030:CDS |
CAAGCGTCTTGCCACTCAGA+TGG | 0.543275 | 5_3:-55126930 | Msa0819030:CDS |
TTATGCGTTGCTGTTTCAGG+TGG | 0.547321 | 5_3:-55126752 | Msa0819030:CDS |
GGCAATGTCTAGTAGGTGCT+GGG | 0.548348 | 5_3:-55125956 | Msa0819030:CDS |
ATAATGGTAGTGGTAATTCT+CGG | 0.552969 | 5_3:-55126485 | Msa0819030:CDS |
TAATGGTAAAGATGAAATTG+AGG | 0.553613 | 5_3:-55127122 | Msa0819030:CDS |
ATTATGTGTTTCCATTCATG+AGG | 0.556074 | 5_3:+55126503 | None:intergenic |
GAATAGCACTCAATGTGCTC+GGG | 0.557900 | 5_3:+55126999 | None:intergenic |
CCGAAACAGAAGTCATAAGT+AGG | 0.558846 | 5_3:+55125861 | None:intergenic |
TTCAAGTTCTCGAAGAGCAA+TGG | 0.559290 | 5_3:-55127050 | Msa0819030:CDS |
AAGGCACAGATTGTGAAGCC+TGG | 0.561142 | 5_3:+55126906 | None:intergenic |
AGATCTGAGCGCCCGGCCAT+CGG | 0.567721 | 5_3:-55126407 | Msa0819030:CDS |
ATGGAAACACATAATGGTAG+TGG | 0.568927 | 5_3:-55126495 | Msa0819030:CDS |
AGAAGTCGGCAAGGAATGCA+TGG | 0.573813 | 5_3:-55126682 | Msa0819030:CDS |
CTTCTGTTTCGGCAAGCCTG+CGG | 0.574737 | 5_3:-55125850 | Msa0819030:CDS |
GTGTGTCATCAACCAAATCT+GGG | 0.575863 | 5_3:-55125674 | Msa0819030:CDS |
ATTTCACCTCTGCGTCGCGA+AGG | 0.576158 | 5_3:-55125696 | Msa0819030:CDS |
AAGCTATGTGAACTCGGAGA+AGG | 0.576858 | 5_3:+55126887 | None:intergenic |
TTCTGTGATTCCAAAGAAGT+CGG | 0.578176 | 5_3:-55126696 | Msa0819030:CDS |
TCTCTTAAGCTATGTGAACT+CGG | 0.578236 | 5_3:+55126881 | None:intergenic |
ATGGAATATCATAGTCCAGA+TGG | 0.578861 | 5_3:-55125573 | Msa0819030:CDS |
GTATAAAAGATCTGAGCGCC+CGG | 0.584269 | 5_3:-55126414 | Msa0819030:CDS |
TGGATCGGACGAAGAATCAC+AGG | 0.586235 | 5_3:-55126294 | Msa0819030:CDS |
ACTGTTAGGCAATGTCTAGT+AGG | 0.586758 | 5_3:-55125963 | Msa0819030:CDS |
CATACAGAAAAGCATAAAAG+TGG | 0.591275 | 5_3:+55126034 | None:intergenic |
TTGCTCAAGAAATGCGAACG+GGG | 0.591460 | 5_3:-55125785 | Msa0819030:CDS |
TCTTGCCACTCAGATGGACC+AGG | 0.594178 | 5_3:-55126924 | Msa0819030:CDS |
GCAGAGGTGAAATCGGCGGT+TGG | 0.594442 | 5_3:+55125706 | None:intergenic |
AATGATTCCACCAACTCCGC+CGG | 0.599929 | 5_3:-55125499 | Msa0819030:CDS |
GTGCTCGGGAACTTTCTACC+AGG | 0.603559 | 5_3:+55127013 | None:intergenic |
TCTTGCTCAAGAAATGCGAA+CGG | 0.603658 | 5_3:-55125787 | Msa0819030:CDS |
TAAAGATTATGATTCTGGAT+CGG | 0.607721 | 5_3:-55126309 | Msa0819030:CDS |
CCAAGATGAAAATCCAAAAG+GGG | 0.608853 | 5_3:+55126009 | None:intergenic |
TGCTCAAGAAATGCGAACGG+GGG | 0.610733 | 5_3:-55125784 | Msa0819030:CDS |
GATTAGGAACCCGATGAACA+TGG | 0.611445 | 5_3:-55126792 | Msa0819030:CDS |
TGAGACTGAAATCATTTGAG+AGG | 0.616878 | 5_3:-55126238 | Msa0819030:CDS |
CAGTCGAAAATAGACCAAAG+TGG | 0.632679 | 5_3:-55126181 | Msa0819030:CDS |
AATAGACCAAAGTGGAGTGG+AGG | 0.635594 | 5_3:-55126173 | Msa0819030:CDS |
ATGGTGACAGATGAAAATCC+TGG | 0.643050 | 5_3:-55127031 | Msa0819030:CDS |
ATCGGCACAGAAGTACAAGA+TGG | 0.645219 | 5_3:+55126585 | None:intergenic |
GACACACCTTCGCGACGCAG+AGG | 0.651096 | 5_3:+55125690 | None:intergenic |
TGATTCCAAAGAAGTCGGCA+AGG | 0.653679 | 5_3:-55126691 | Msa0819030:CDS |
AGTGTGCAGTCCGAAACCGC+AGG | 0.654614 | 5_3:+55125834 | None:intergenic |
TCAACATACCAGTCATGACA+AGG | 0.654796 | 5_3:+55126720 | None:intergenic |
GATTCTCTTTGTATCACCGG+CGG | 0.656253 | 5_3:+55125483 | None:intergenic |
GAAAATAGACCAAAGTGGAG+TGG | 0.658100 | 5_3:-55126176 | Msa0819030:CDS |
TATACATATTCCAACACCGA+TGG | 0.667440 | 5_3:+55126391 | None:intergenic |
GGAGACGAGTTGACACCAAG+AGG | 0.669536 | 5_3:+55125642 | None:intergenic |
GAATCATAATCTTTACCTAG+AGG | 0.677371 | 5_3:+55126317 | None:intergenic |
CAAGATGAAAATCCAAAAGG+GGG | 0.678756 | 5_3:+55126010 | None:intergenic |
CGACGCAGAGGTGAAATCGG+CGG | 0.690132 | 5_3:+55125702 | None:intergenic |
TGAAGCCTGGTCCATCTGAG+TGG | 0.740360 | 5_3:+55126919 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTATCATCTACAATATGAT+AGG | + | chr5_3:55126860-55126879 | None:intergenic | 20.0% |
!! | TTTATCATCTACAATATGAT+AGG | + | chr5_3:55126860-55126879 | None:intergenic | 20.0% |
! | TAATGGTAAAGATGAAATTG+AGG | - | chr5_3:55125493-55125512 | Msa0819030:CDS | 25.0% |
! | ATTGAGGAATGTAACAATAA+TGG | - | chr5_3:55125509-55125528 | Msa0819030:CDS | 25.0% |
!! | ATATGTATAACTTTTGCGAT+CGG | - | chr5_3:55126238-55126257 | Msa0819030:CDS | 25.0% |
! | TAAAGATTATGATTCTGGAT+CGG | - | chr5_3:55126306-55126325 | Msa0819030:CDS | 25.0% |
! | AATTATACCTCTTTCTCATT+TGG | + | chr5_3:55126732-55126751 | None:intergenic | 25.0% |
! | TAATGGTAAAGATGAAATTG+AGG | - | chr5_3:55125493-55125512 | Msa0819030:CDS | 25.0% |
! | ATTGAGGAATGTAACAATAA+TGG | - | chr5_3:55125509-55125528 | Msa0819030:CDS | 25.0% |
!! | ATATGTATAACTTTTGCGAT+CGG | - | chr5_3:55126238-55126257 | Msa0819030:CDS | 25.0% |
! | TAAAGATTATGATTCTGGAT+CGG | - | chr5_3:55126306-55126325 | Msa0819030:CDS | 25.0% |
! | AATTATACCTCTTTCTCATT+TGG | + | chr5_3:55126732-55126751 | None:intergenic | 25.0% |
!! | ATGGTTTCGGTTGATAATAA+TGG | - | chr5_3:55125476-55125495 | Msa0819030:CDS | 30.0% |
TCGAGAACTTGAAATATCTA+TGG | + | chr5_3:55125558-55125577 | None:intergenic | 30.0% | |
! | TTGAAGAAGTTGATCCTATT+AGG | + | chr5_3:55125641-55125660 | None:intergenic | 30.0% |
AGGATCAACTTCTTCAAAAT+CGG | - | chr5_3:55125644-55125663 | Msa0819030:CDS | 30.0% | |
TGAAGAAGATGACAATAGAA+TGG | - | chr5_3:55125801-55125820 | Msa0819030:CDS | 30.0% | |
! | AGATGACAATAGAATGGATT+AGG | - | chr5_3:55125807-55125826 | Msa0819030:CDS | 30.0% |
ACAAGATGGTAGAATAACTT+TGG | + | chr5_3:55126019-55126038 | None:intergenic | 30.0% | |
ATTATGTGTTTCCATTCATG+AGG | + | chr5_3:55126115-55126134 | None:intergenic | 30.0% | |
TCATGAATGGAAACACATAA+TGG | - | chr5_3:55126114-55126133 | Msa0819030:CDS | 30.0% | |
!! | ATAATGGTAGTGGTAATTCT+CGG | - | chr5_3:55126130-55126149 | Msa0819030:CDS | 30.0% |
GAATCATAATCTTTACCTAG+AGG | + | chr5_3:55126301-55126320 | None:intergenic | 30.0% | |
CTAGGTAAAGATTATGATTC+TGG | - | chr5_3:55126301-55126320 | Msa0819030:CDS | 30.0% | |
!! | TTCTGTACTTTTTGTGCATT+TGG | - | chr5_3:55126511-55126530 | Msa0819030:CDS | 30.0% |
! | CATACAGAAAAGCATAAAAG+TGG | + | chr5_3:55126584-55126603 | None:intergenic | 30.0% |
! | CACTTTTATGCTTTTCTGTA+TGG | - | chr5_3:55126582-55126601 | Msa0819030:CDS | 30.0% |
!!! | GGGATTGTTCTATGTTTTTT+CGG | - | chr5_3:55126679-55126698 | Msa0819030:CDS | 30.0% |
! | AAGTTCTAGCAGTTTCTTTA+TGG | - | chr5_3:55127023-55127042 | Msa0819030:CDS | 30.0% |
! | TTCAGAAAGCTCTTCTTTTA+CGG | + | chr5_3:55127079-55127098 | None:intergenic | 30.0% |
!! | ATGGTTTCGGTTGATAATAA+TGG | - | chr5_3:55125476-55125495 | Msa0819030:CDS | 30.0% |
TCGAGAACTTGAAATATCTA+TGG | + | chr5_3:55125558-55125577 | None:intergenic | 30.0% | |
! | TTGAAGAAGTTGATCCTATT+AGG | + | chr5_3:55125641-55125660 | None:intergenic | 30.0% |
AGGATCAACTTCTTCAAAAT+CGG | - | chr5_3:55125644-55125663 | Msa0819030:CDS | 30.0% | |
TGAAGAAGATGACAATAGAA+TGG | - | chr5_3:55125801-55125820 | Msa0819030:CDS | 30.0% | |
! | AGATGACAATAGAATGGATT+AGG | - | chr5_3:55125807-55125826 | Msa0819030:CDS | 30.0% |
ACAAGATGGTAGAATAACTT+TGG | + | chr5_3:55126019-55126038 | None:intergenic | 30.0% | |
ATTATGTGTTTCCATTCATG+AGG | + | chr5_3:55126115-55126134 | None:intergenic | 30.0% | |
TCATGAATGGAAACACATAA+TGG | - | chr5_3:55126114-55126133 | Msa0819030:CDS | 30.0% | |
!! | ATAATGGTAGTGGTAATTCT+CGG | - | chr5_3:55126130-55126149 | Msa0819030:CDS | 30.0% |
GAATCATAATCTTTACCTAG+AGG | + | chr5_3:55126301-55126320 | None:intergenic | 30.0% | |
CTAGGTAAAGATTATGATTC+TGG | - | chr5_3:55126301-55126320 | Msa0819030:CDS | 30.0% | |
!! | TTCTGTACTTTTTGTGCATT+TGG | - | chr5_3:55126511-55126530 | Msa0819030:CDS | 30.0% |
! | CATACAGAAAAGCATAAAAG+TGG | + | chr5_3:55126584-55126603 | None:intergenic | 30.0% |
! | CACTTTTATGCTTTTCTGTA+TGG | - | chr5_3:55126582-55126601 | Msa0819030:CDS | 30.0% |
!!! | GGGATTGTTCTATGTTTTTT+CGG | - | chr5_3:55126679-55126698 | Msa0819030:CDS | 30.0% |
! | AAGTTCTAGCAGTTTCTTTA+TGG | - | chr5_3:55127023-55127042 | Msa0819030:CDS | 30.0% |
! | TTCAGAAAGCTCTTCTTTTA+CGG | + | chr5_3:55127079-55127098 | None:intergenic | 30.0% |
! | CATTGAGTGCTATTCCTAAT+AGG | - | chr5_3:55125624-55125643 | Msa0819030:CDS | 35.0% |
TCTCTTAAGCTATGTGAACT+CGG | + | chr5_3:55125737-55125756 | None:intergenic | 35.0% | |
! | TGTTTTCAAAGAAACTCGAC+TGG | - | chr5_3:55125771-55125790 | Msa0819030:CDS | 35.0% |
! | GTTTTCAAAGAAACTCGACT+GGG | - | chr5_3:55125772-55125791 | Msa0819030:CDS | 35.0% |
TTCTGTGATTCCAAAGAAGT+CGG | - | chr5_3:55125919-55125938 | Msa0819030:CDS | 35.0% | |
! | CGATATCTTTTGGATTCCAT+CGG | + | chr5_3:55126051-55126070 | None:intergenic | 35.0% |
! | CTAAGTTTGGCGATATCTTT+TGG | + | chr5_3:55126061-55126080 | None:intergenic | 35.0% |
AGATATCGCCAAACTTAGAA+AGG | - | chr5_3:55126063-55126082 | Msa0819030:CDS | 35.0% | |
GAACTTATAAGCCTCATGAA+TGG | - | chr5_3:55126101-55126120 | Msa0819030:CDS | 35.0% | |
ATGGAAACACATAATGGTAG+TGG | - | chr5_3:55126120-55126139 | Msa0819030:CDS | 35.0% | |
TTTGCTCAATATGCACTTTG+TGG | - | chr5_3:55126166-55126185 | Msa0819030:CDS | 35.0% | |
CACTTTGTGGTCTAAACTTA+GGG | - | chr5_3:55126179-55126198 | Msa0819030:CDS | 35.0% | |
TATACATATTCCAACACCGA+TGG | + | chr5_3:55126227-55126246 | None:intergenic | 35.0% | |
TATACAATCCTTAGTCCTCT+AGG | - | chr5_3:55126283-55126302 | Msa0819030:CDS | 35.0% | |
AATCTTTACCTAGAGGACTA+AGG | + | chr5_3:55126294-55126313 | None:intergenic | 35.0% | |
TGAGACTGAAATCATTTGAG+AGG | - | chr5_3:55126377-55126396 | Msa0819030:CDS | 35.0% | |
TGGAGGAATACTTGACATTT+GGG | - | chr5_3:55126459-55126478 | Msa0819030:CDS | 35.0% | |
!! | GTACTTTTTGTGCATTTGGT+TGG | - | chr5_3:55126515-55126534 | Msa0819030:CDS | 35.0% |
TTGTGCATTTGGTTGGAATA+TGG | - | chr5_3:55126522-55126541 | Msa0819030:CDS | 35.0% | |
CAAGATGAAAATCCAAAAGG+GGG | + | chr5_3:55126608-55126627 | None:intergenic | 35.0% | |
CCAAGATGAAAATCCAAAAG+GGG | + | chr5_3:55126609-55126628 | None:intergenic | 35.0% | |
GCCAAGATGAAAATCCAAAA+GGG | + | chr5_3:55126610-55126629 | None:intergenic | 35.0% | |
AGCCAAGATGAAAATCCAAA+AGG | + | chr5_3:55126611-55126630 | None:intergenic | 35.0% | |
ATATTGAGGATGACACTGTT+AGG | - | chr5_3:55126638-55126657 | Msa0819030:CDS | 35.0% | |
!!! | TGTTTTTTCGGTATGCTCTA+TGG | - | chr5_3:55126691-55126710 | Msa0819030:CDS | 35.0% |
CCTACTTATGACTTCTGTTT+CGG | - | chr5_3:55126754-55126773 | Msa0819030:CDS | 35.0% | |
AAGAAACTGCTAGAACTTAG+AGG | + | chr5_3:55127021-55127040 | None:intergenic | 35.0% | |
ATGGAATATCATAGTCCAGA+TGG | - | chr5_3:55127042-55127061 | Msa0819030:CDS | 35.0% | |
! | TCTTCTTTTACGGAAGATAG+TGG | + | chr5_3:55127069-55127088 | None:intergenic | 35.0% |
! | CATTGAGTGCTATTCCTAAT+AGG | - | chr5_3:55125624-55125643 | Msa0819030:CDS | 35.0% |
TCTCTTAAGCTATGTGAACT+CGG | + | chr5_3:55125737-55125756 | None:intergenic | 35.0% | |
! | TGTTTTCAAAGAAACTCGAC+TGG | - | chr5_3:55125771-55125790 | Msa0819030:CDS | 35.0% |
! | GTTTTCAAAGAAACTCGACT+GGG | - | chr5_3:55125772-55125791 | Msa0819030:CDS | 35.0% |
TTCTGTGATTCCAAAGAAGT+CGG | - | chr5_3:55125919-55125938 | Msa0819030:CDS | 35.0% | |
! | CGATATCTTTTGGATTCCAT+CGG | + | chr5_3:55126051-55126070 | None:intergenic | 35.0% |
! | CTAAGTTTGGCGATATCTTT+TGG | + | chr5_3:55126061-55126080 | None:intergenic | 35.0% |
AGATATCGCCAAACTTAGAA+AGG | - | chr5_3:55126063-55126082 | Msa0819030:CDS | 35.0% | |
GAACTTATAAGCCTCATGAA+TGG | - | chr5_3:55126101-55126120 | Msa0819030:CDS | 35.0% | |
ATGGAAACACATAATGGTAG+TGG | - | chr5_3:55126120-55126139 | Msa0819030:CDS | 35.0% | |
TTTGCTCAATATGCACTTTG+TGG | - | chr5_3:55126166-55126185 | Msa0819030:CDS | 35.0% | |
CACTTTGTGGTCTAAACTTA+GGG | - | chr5_3:55126179-55126198 | Msa0819030:CDS | 35.0% | |
TATACATATTCCAACACCGA+TGG | + | chr5_3:55126227-55126246 | None:intergenic | 35.0% | |
TATACAATCCTTAGTCCTCT+AGG | - | chr5_3:55126283-55126302 | Msa0819030:CDS | 35.0% | |
AATCTTTACCTAGAGGACTA+AGG | + | chr5_3:55126294-55126313 | None:intergenic | 35.0% | |
TGAGACTGAAATCATTTGAG+AGG | - | chr5_3:55126377-55126396 | Msa0819030:CDS | 35.0% | |
TGGAGGAATACTTGACATTT+GGG | - | chr5_3:55126459-55126478 | Msa0819030:CDS | 35.0% | |
!! | GTACTTTTTGTGCATTTGGT+TGG | - | chr5_3:55126515-55126534 | Msa0819030:CDS | 35.0% |
TTGTGCATTTGGTTGGAATA+TGG | - | chr5_3:55126522-55126541 | Msa0819030:CDS | 35.0% | |
CAAGATGAAAATCCAAAAGG+GGG | + | chr5_3:55126608-55126627 | None:intergenic | 35.0% | |
CCAAGATGAAAATCCAAAAG+GGG | + | chr5_3:55126609-55126628 | None:intergenic | 35.0% | |
GCCAAGATGAAAATCCAAAA+GGG | + | chr5_3:55126610-55126629 | None:intergenic | 35.0% | |
AGCCAAGATGAAAATCCAAA+AGG | + | chr5_3:55126611-55126630 | None:intergenic | 35.0% | |
ATATTGAGGATGACACTGTT+AGG | - | chr5_3:55126638-55126657 | Msa0819030:CDS | 35.0% | |
!!! | TGTTTTTTCGGTATGCTCTA+TGG | - | chr5_3:55126691-55126710 | Msa0819030:CDS | 35.0% |
CCTACTTATGACTTCTGTTT+CGG | - | chr5_3:55126754-55126773 | Msa0819030:CDS | 35.0% | |
AAGAAACTGCTAGAACTTAG+AGG | + | chr5_3:55127021-55127040 | None:intergenic | 35.0% | |
ATGGAATATCATAGTCCAGA+TGG | - | chr5_3:55127042-55127061 | Msa0819030:CDS | 35.0% | |
! | TCTTCTTTTACGGAAGATAG+TGG | + | chr5_3:55127069-55127088 | None:intergenic | 35.0% |
! | TTCAAGTTCTCGAAGAGCAA+TGG | - | chr5_3:55125565-55125584 | Msa0819030:CDS | 40.0% |
ATGGTGACAGATGAAAATCC+TGG | - | chr5_3:55125584-55125603 | Msa0819030:CDS | 40.0% | |
GCATAAGATCCACGCAAAAA+GGG | + | chr5_3:55125849-55125868 | None:intergenic | 40.0% | |
!! | ATCTTATGCGTTGCTGTTTC+AGG | - | chr5_3:55125860-55125879 | Msa0819030:CDS | 40.0% |
TCAACATACCAGTCATGACA+AGG | + | chr5_3:55125898-55125917 | None:intergenic | 40.0% | |
GCAGTACTCCTTTCTAAGTT+TGG | + | chr5_3:55126074-55126093 | None:intergenic | 40.0% | |
!! | AGAAAGGAGTACTGCAAGAA+TGG | - | chr5_3:55126079-55126098 | Msa0819030:CDS | 40.0% |
GCACTTTGTGGTCTAAACTT+AGG | - | chr5_3:55126178-55126197 | Msa0819030:CDS | 40.0% | |
GTATATAGACCAGCAATTGC+AGG | + | chr5_3:55126268-55126287 | None:intergenic | 40.0% | |
CAGTCGAAAATAGACCAAAG+TGG | - | chr5_3:55126434-55126453 | Msa0819030:CDS | 40.0% | |
GAAAATAGACCAAAGTGGAG+TGG | - | chr5_3:55126439-55126458 | Msa0819030:CDS | 40.0% | |
GTGGAGGAATACTTGACATT+TGG | - | chr5_3:55126458-55126477 | Msa0819030:CDS | 40.0% | |
AATATGGAGAGACTTGGCTT+TGG | - | chr5_3:55126538-55126557 | Msa0819030:CDS | 40.0% | |
! | CCCCTTTTGGATTTTCATCT+TGG | - | chr5_3:55126606-55126625 | Msa0819030:CDS | 40.0% |
CTTGGCTGCTGTTAATATTG+AGG | - | chr5_3:55126624-55126643 | Msa0819030:CDS | 40.0% | |
ACTGTTAGGCAATGTCTAGT+AGG | - | chr5_3:55126652-55126671 | Msa0819030:CDS | 40.0% | |
!! | TTTTTCGGTATGCTCTATGG+TGG | - | chr5_3:55126694-55126713 | Msa0819030:CDS | 40.0% |
! | GTATGCTCTATGGTGGTTTT+TGG | - | chr5_3:55126701-55126720 | Msa0819030:CDS | 40.0% |
CCGAAACAGAAGTCATAAGT+AGG | + | chr5_3:55126757-55126776 | None:intergenic | 40.0% | |
CACTTTGGCTATTCTGTTGT+TGG | - | chr5_3:55126800-55126819 | Msa0819030:CDS | 40.0% | |
TCTTGCTCAAGAAATGCGAA+CGG | - | chr5_3:55126828-55126847 | Msa0819030:CDS | 40.0% | |
GTGTGTCATCAACCAAATCT+GGG | - | chr5_3:55126941-55126960 | Msa0819030:CDS | 40.0% | |
CTTGACGGTTTGAAAGTAGA+AGG | + | chr5_3:55126997-55127016 | None:intergenic | 40.0% | |
CTAGAACTTAGAGGACTTGA+CGG | + | chr5_3:55127012-55127031 | None:intergenic | 40.0% | |
GGAGATTCTCTTTGTATCAC+CGG | + | chr5_3:55127138-55127157 | None:intergenic | 40.0% | |
! | TTCAAGTTCTCGAAGAGCAA+TGG | - | chr5_3:55125565-55125584 | Msa0819030:CDS | 40.0% |
ATGGTGACAGATGAAAATCC+TGG | - | chr5_3:55125584-55125603 | Msa0819030:CDS | 40.0% | |
GCATAAGATCCACGCAAAAA+GGG | + | chr5_3:55125849-55125868 | None:intergenic | 40.0% | |
!! | ATCTTATGCGTTGCTGTTTC+AGG | - | chr5_3:55125860-55125879 | Msa0819030:CDS | 40.0% |
TCAACATACCAGTCATGACA+AGG | + | chr5_3:55125898-55125917 | None:intergenic | 40.0% | |
GCAGTACTCCTTTCTAAGTT+TGG | + | chr5_3:55126074-55126093 | None:intergenic | 40.0% | |
!! | AGAAAGGAGTACTGCAAGAA+TGG | - | chr5_3:55126079-55126098 | Msa0819030:CDS | 40.0% |
GCACTTTGTGGTCTAAACTT+AGG | - | chr5_3:55126178-55126197 | Msa0819030:CDS | 40.0% | |
GTATATAGACCAGCAATTGC+AGG | + | chr5_3:55126268-55126287 | None:intergenic | 40.0% | |
CAGTCGAAAATAGACCAAAG+TGG | - | chr5_3:55126434-55126453 | Msa0819030:CDS | 40.0% | |
GAAAATAGACCAAAGTGGAG+TGG | - | chr5_3:55126439-55126458 | Msa0819030:CDS | 40.0% | |
GTGGAGGAATACTTGACATT+TGG | - | chr5_3:55126458-55126477 | Msa0819030:CDS | 40.0% | |
AATATGGAGAGACTTGGCTT+TGG | - | chr5_3:55126538-55126557 | Msa0819030:CDS | 40.0% | |
! | CCCCTTTTGGATTTTCATCT+TGG | - | chr5_3:55126606-55126625 | Msa0819030:CDS | 40.0% |
CTTGGCTGCTGTTAATATTG+AGG | - | chr5_3:55126624-55126643 | Msa0819030:CDS | 40.0% | |
ACTGTTAGGCAATGTCTAGT+AGG | - | chr5_3:55126652-55126671 | Msa0819030:CDS | 40.0% | |
!! | TTTTTCGGTATGCTCTATGG+TGG | - | chr5_3:55126694-55126713 | Msa0819030:CDS | 40.0% |
! | GTATGCTCTATGGTGGTTTT+TGG | - | chr5_3:55126701-55126720 | Msa0819030:CDS | 40.0% |
CCGAAACAGAAGTCATAAGT+AGG | + | chr5_3:55126757-55126776 | None:intergenic | 40.0% | |
CACTTTGGCTATTCTGTTGT+TGG | - | chr5_3:55126800-55126819 | Msa0819030:CDS | 40.0% | |
TCTTGCTCAAGAAATGCGAA+CGG | - | chr5_3:55126828-55126847 | Msa0819030:CDS | 40.0% | |
GTGTGTCATCAACCAAATCT+GGG | - | chr5_3:55126941-55126960 | Msa0819030:CDS | 40.0% | |
CTTGACGGTTTGAAAGTAGA+AGG | + | chr5_3:55126997-55127016 | None:intergenic | 40.0% | |
CTAGAACTTAGAGGACTTGA+CGG | + | chr5_3:55127012-55127031 | None:intergenic | 40.0% | |
GGAGATTCTCTTTGTATCAC+CGG | + | chr5_3:55127138-55127157 | None:intergenic | 40.0% | |
GAATAGCACTCAATGTGCTC+GGG | + | chr5_3:55125619-55125638 | None:intergenic | 45.0% | |
GGAATAGCACTCAATGTGCT+CGG | + | chr5_3:55125620-55125639 | None:intergenic | 45.0% | |
AGTGGCAAGACGCTTGAATT+TGG | + | chr5_3:55125681-55125700 | None:intergenic | 45.0% | |
AAGCTATGTGAACTCGGAGA+AGG | + | chr5_3:55125731-55125750 | None:intergenic | 45.0% | |
GATTAGGAACCCGATGAACA+TGG | - | chr5_3:55125823-55125842 | Msa0819030:CDS | 45.0% | |
CAAAAAGGGCCATGTTCATC+GGG | + | chr5_3:55125835-55125854 | None:intergenic | 45.0% | |
GCAAAAAGGGCCATGTTCAT+CGG | + | chr5_3:55125836-55125855 | None:intergenic | 45.0% | |
CGCATAAGATCCACGCAAAA+AGG | + | chr5_3:55125850-55125869 | None:intergenic | 45.0% | |
!! | TTATGCGTTGCTGTTTCAGG+TGG | - | chr5_3:55125863-55125882 | Msa0819030:CDS | 45.0% |
ATCCTGTTCCTTGTCATGAC+TGG | - | chr5_3:55125887-55125906 | Msa0819030:CDS | 45.0% | |
TACCAGTCATGACAAGGAAC+AGG | + | chr5_3:55125892-55125911 | None:intergenic | 45.0% | |
TGATTCCAAAGAAGTCGGCA+AGG | - | chr5_3:55125924-55125943 | Msa0819030:CDS | 45.0% | |
! | ATCGGCACAGAAGTACAAGA+TGG | + | chr5_3:55126033-55126052 | None:intergenic | 45.0% |
ATCTTGTACTTCTGTGCCGA+TGG | - | chr5_3:55126032-55126051 | Msa0819030:CDS | 45.0% | |
GTATAAAAGATCTGAGCGCC+CGG | - | chr5_3:55126201-55126220 | Msa0819030:CDS | 45.0% | |
AATAGACCAAAGTGGAGTGG+AGG | - | chr5_3:55126442-55126461 | Msa0819030:CDS | 45.0% | |
AGTATTCCTCCACTCCACTT+TGG | + | chr5_3:55126451-55126470 | None:intergenic | 45.0% | |
GGTTGGAATATGGAGAGACT+TGG | - | chr5_3:55126532-55126551 | Msa0819030:CDS | 45.0% | |
! | TTTTCTGTATGGCCCCCTTT+TGG | - | chr5_3:55126593-55126612 | Msa0819030:CDS | 45.0% |
!! | TGCTCTATGGTGGTTTTTGG+AGG | - | chr5_3:55126704-55126723 | Msa0819030:CDS | 45.0% |
GGAGGATCCAAATGAGAAAG+AGG | - | chr5_3:55126722-55126741 | Msa0819030:CDS | 45.0% | |
CTTGCTCAAGAAATGCGAAC+GGG | - | chr5_3:55126829-55126848 | Msa0819030:CDS | 45.0% | |
TTGCTCAAGAAATGCGAACG+GGG | - | chr5_3:55126830-55126849 | Msa0819030:CDS | 45.0% | |
GGTGTGTCATCAACCAAATC+TGG | - | chr5_3:55126940-55126959 | Msa0819030:CDS | 45.0% | |
AGGAGAACTTGTCCCAGATT+TGG | + | chr5_3:55126956-55126975 | None:intergenic | 45.0% | |
GATTCTCTTTGTATCACCGG+CGG | + | chr5_3:55127135-55127154 | None:intergenic | 45.0% | |
GAATAGCACTCAATGTGCTC+GGG | + | chr5_3:55125619-55125638 | None:intergenic | 45.0% | |
GGAATAGCACTCAATGTGCT+CGG | + | chr5_3:55125620-55125639 | None:intergenic | 45.0% | |
AGTGGCAAGACGCTTGAATT+TGG | + | chr5_3:55125681-55125700 | None:intergenic | 45.0% | |
AAGCTATGTGAACTCGGAGA+AGG | + | chr5_3:55125731-55125750 | None:intergenic | 45.0% | |
GATTAGGAACCCGATGAACA+TGG | - | chr5_3:55125823-55125842 | Msa0819030:CDS | 45.0% | |
CAAAAAGGGCCATGTTCATC+GGG | + | chr5_3:55125835-55125854 | None:intergenic | 45.0% | |
GCAAAAAGGGCCATGTTCAT+CGG | + | chr5_3:55125836-55125855 | None:intergenic | 45.0% | |
CGCATAAGATCCACGCAAAA+AGG | + | chr5_3:55125850-55125869 | None:intergenic | 45.0% | |
!! | TTATGCGTTGCTGTTTCAGG+TGG | - | chr5_3:55125863-55125882 | Msa0819030:CDS | 45.0% |
ATCCTGTTCCTTGTCATGAC+TGG | - | chr5_3:55125887-55125906 | Msa0819030:CDS | 45.0% | |
TACCAGTCATGACAAGGAAC+AGG | + | chr5_3:55125892-55125911 | None:intergenic | 45.0% | |
TGATTCCAAAGAAGTCGGCA+AGG | - | chr5_3:55125924-55125943 | Msa0819030:CDS | 45.0% | |
! | ATCGGCACAGAAGTACAAGA+TGG | + | chr5_3:55126033-55126052 | None:intergenic | 45.0% |
ATCTTGTACTTCTGTGCCGA+TGG | - | chr5_3:55126032-55126051 | Msa0819030:CDS | 45.0% | |
GTATAAAAGATCTGAGCGCC+CGG | - | chr5_3:55126201-55126220 | Msa0819030:CDS | 45.0% | |
AATAGACCAAAGTGGAGTGG+AGG | - | chr5_3:55126442-55126461 | Msa0819030:CDS | 45.0% | |
AGTATTCCTCCACTCCACTT+TGG | + | chr5_3:55126451-55126470 | None:intergenic | 45.0% | |
GGTTGGAATATGGAGAGACT+TGG | - | chr5_3:55126532-55126551 | Msa0819030:CDS | 45.0% | |
! | TTTTCTGTATGGCCCCCTTT+TGG | - | chr5_3:55126593-55126612 | Msa0819030:CDS | 45.0% |
!! | TGCTCTATGGTGGTTTTTGG+AGG | - | chr5_3:55126704-55126723 | Msa0819030:CDS | 45.0% |
GGAGGATCCAAATGAGAAAG+AGG | - | chr5_3:55126722-55126741 | Msa0819030:CDS | 45.0% | |
CTTGCTCAAGAAATGCGAAC+GGG | - | chr5_3:55126829-55126848 | Msa0819030:CDS | 45.0% | |
TTGCTCAAGAAATGCGAACG+GGG | - | chr5_3:55126830-55126849 | Msa0819030:CDS | 45.0% | |
GGTGTGTCATCAACCAAATC+TGG | - | chr5_3:55126940-55126959 | Msa0819030:CDS | 45.0% | |
AGGAGAACTTGTCCCAGATT+TGG | + | chr5_3:55126956-55126975 | None:intergenic | 45.0% | |
GATTCTCTTTGTATCACCGG+CGG | + | chr5_3:55127135-55127154 | None:intergenic | 45.0% | |
AAGGCACAGATTGTGAAGCC+TGG | + | chr5_3:55125712-55125731 | None:intergenic | 50.0% | |
! | TGAACATGGCCCTTTTTGCG+TGG | - | chr5_3:55125837-55125856 | Msa0819030:CDS | 50.0% |
!! | GCATTCCTTGCCGACTTCTT+TGG | + | chr5_3:55125932-55125951 | None:intergenic | 50.0% |
AGAAGTCGGCAAGGAATGCA+TGG | - | chr5_3:55125933-55125952 | Msa0819030:CDS | 50.0% | |
ATATTCCAACACCGATGGCC+GGG | + | chr5_3:55126222-55126241 | None:intergenic | 50.0% | |
CATATTCCAACACCGATGGC+CGG | + | chr5_3:55126223-55126242 | None:intergenic | 50.0% | |
TGGATCGGACGAAGAATCAC+AGG | - | chr5_3:55126321-55126340 | Msa0819030:CDS | 50.0% | |
AGGCAATGTCTAGTAGGTGC+TGG | - | chr5_3:55126658-55126677 | Msa0819030:CDS | 50.0% | |
GGCAATGTCTAGTAGGTGCT+GGG | - | chr5_3:55126659-55126678 | Msa0819030:CDS | 50.0% | |
TGCTCAAGAAATGCGAACGG+GGG | - | chr5_3:55126831-55126850 | Msa0819030:CDS | 50.0% | |
! | TCTGGGACAAGTTCTCCTCT+TGG | - | chr5_3:55126958-55126977 | Msa0819030:CDS | 50.0% |
!! | ACGGAAGATAGTGGACCATC+TGG | + | chr5_3:55127060-55127079 | None:intergenic | 50.0% |
AATGATTCCACCAACTCCGC+CGG | - | chr5_3:55127116-55127135 | Msa0819030:CDS | 50.0% | |
AAGGCACAGATTGTGAAGCC+TGG | + | chr5_3:55125712-55125731 | None:intergenic | 50.0% | |
! | TGAACATGGCCCTTTTTGCG+TGG | - | chr5_3:55125837-55125856 | Msa0819030:CDS | 50.0% |
!! | GCATTCCTTGCCGACTTCTT+TGG | + | chr5_3:55125932-55125951 | None:intergenic | 50.0% |
AGAAGTCGGCAAGGAATGCA+TGG | - | chr5_3:55125933-55125952 | Msa0819030:CDS | 50.0% | |
ATATTCCAACACCGATGGCC+GGG | + | chr5_3:55126222-55126241 | None:intergenic | 50.0% | |
CATATTCCAACACCGATGGC+CGG | + | chr5_3:55126223-55126242 | None:intergenic | 50.0% | |
TGGATCGGACGAAGAATCAC+AGG | - | chr5_3:55126321-55126340 | Msa0819030:CDS | 50.0% | |
AGGCAATGTCTAGTAGGTGC+TGG | - | chr5_3:55126658-55126677 | Msa0819030:CDS | 50.0% | |
GGCAATGTCTAGTAGGTGCT+GGG | - | chr5_3:55126659-55126678 | Msa0819030:CDS | 50.0% | |
TGCTCAAGAAATGCGAACGG+GGG | - | chr5_3:55126831-55126850 | Msa0819030:CDS | 50.0% | |
! | TCTGGGACAAGTTCTCCTCT+TGG | - | chr5_3:55126958-55126977 | Msa0819030:CDS | 50.0% |
!! | ACGGAAGATAGTGGACCATC+TGG | + | chr5_3:55127060-55127079 | None:intergenic | 50.0% |
AATGATTCCACCAACTCCGC+CGG | - | chr5_3:55127116-55127135 | Msa0819030:CDS | 50.0% | |
GTGCTCGGGAACTTTCTACC+AGG | + | chr5_3:55125605-55125624 | None:intergenic | 55.0% | |
CAAGCGTCTTGCCACTCAGA+TGG | - | chr5_3:55125685-55125704 | Msa0819030:CDS | 55.0% | |
TCTTGCCACTCAGATGGACC+AGG | - | chr5_3:55125691-55125710 | Msa0819030:CDS | 55.0% | |
TGAAGCCTGGTCCATCTGAG+TGG | + | chr5_3:55125699-55125718 | None:intergenic | 55.0% | |
ATCGGTGCACCTGCAATTGC+TGG | - | chr5_3:55126256-55126275 | Msa0819030:CDS | 55.0% | |
CTTCTGTTTCGGCAAGCCTG+CGG | - | chr5_3:55126765-55126784 | Msa0819030:CDS | 55.0% | |
TTTCGGCAAGCCTGCGGTTT+CGG | - | chr5_3:55126771-55126790 | Msa0819030:CDS | 55.0% | |
CGGTTTCGGACTGCACACTT+TGG | - | chr5_3:55126785-55126804 | Msa0819030:CDS | 55.0% | |
TCGCGACGCAGAGGTGAAAT+CGG | + | chr5_3:55126919-55126938 | None:intergenic | 55.0% | |
ATTTCACCTCTGCGTCGCGA+AGG | - | chr5_3:55126919-55126938 | Msa0819030:CDS | 55.0% | |
! | GGAGACGAGTTGACACCAAG+AGG | + | chr5_3:55126976-55126995 | None:intergenic | 55.0% |
CTTTGTATCACCGGCGGAGT+TGG | + | chr5_3:55127129-55127148 | None:intergenic | 55.0% | |
GTGCTCGGGAACTTTCTACC+AGG | + | chr5_3:55125605-55125624 | None:intergenic | 55.0% | |
CAAGCGTCTTGCCACTCAGA+TGG | - | chr5_3:55125685-55125704 | Msa0819030:CDS | 55.0% | |
TCTTGCCACTCAGATGGACC+AGG | - | chr5_3:55125691-55125710 | Msa0819030:CDS | 55.0% | |
TGAAGCCTGGTCCATCTGAG+TGG | + | chr5_3:55125699-55125718 | None:intergenic | 55.0% | |
ATCGGTGCACCTGCAATTGC+TGG | - | chr5_3:55126256-55126275 | Msa0819030:CDS | 55.0% | |
CTTCTGTTTCGGCAAGCCTG+CGG | - | chr5_3:55126765-55126784 | Msa0819030:CDS | 55.0% | |
TTTCGGCAAGCCTGCGGTTT+CGG | - | chr5_3:55126771-55126790 | Msa0819030:CDS | 55.0% | |
CGGTTTCGGACTGCACACTT+TGG | - | chr5_3:55126785-55126804 | Msa0819030:CDS | 55.0% | |
TCGCGACGCAGAGGTGAAAT+CGG | + | chr5_3:55126919-55126938 | None:intergenic | 55.0% | |
ATTTCACCTCTGCGTCGCGA+AGG | - | chr5_3:55126919-55126938 | Msa0819030:CDS | 55.0% | |
! | GGAGACGAGTTGACACCAAG+AGG | + | chr5_3:55126976-55126995 | None:intergenic | 55.0% |
CTTTGTATCACCGGCGGAGT+TGG | + | chr5_3:55127129-55127148 | None:intergenic | 55.0% | |
AGTGTGCAGTCCGAAACCGC+AGG | + | chr5_3:55126784-55126803 | None:intergenic | 60.0% | |
GCAGAGGTGAAATCGGCGGT+TGG | + | chr5_3:55126912-55126931 | None:intergenic | 60.0% | |
CGACGCAGAGGTGAAATCGG+CGG | + | chr5_3:55126916-55126935 | None:intergenic | 60.0% | |
TGTATCACCGGCGGAGTTGG+TGG | + | chr5_3:55127126-55127145 | None:intergenic | 60.0% | |
AGTGTGCAGTCCGAAACCGC+AGG | + | chr5_3:55126784-55126803 | None:intergenic | 60.0% | |
GCAGAGGTGAAATCGGCGGT+TGG | + | chr5_3:55126912-55126931 | None:intergenic | 60.0% | |
CGACGCAGAGGTGAAATCGG+CGG | + | chr5_3:55126916-55126935 | None:intergenic | 60.0% | |
TGTATCACCGGCGGAGTTGG+TGG | + | chr5_3:55127126-55127145 | None:intergenic | 60.0% | |
AGATCTGAGCGCCCGGCCAT+CGG | - | chr5_3:55126208-55126227 | Msa0819030:CDS | 65.0% | |
GACACACCTTCGCGACGCAG+AGG | + | chr5_3:55126928-55126947 | None:intergenic | 65.0% | |
AGATCTGAGCGCCCGGCCAT+CGG | - | chr5_3:55126208-55126227 | Msa0819030:CDS | 65.0% | |
GACACACCTTCGCGACGCAG+AGG | + | chr5_3:55126928-55126947 | None:intergenic | 65.0% | |
GAGCGCCCGGCCATCGGTGT+TGG | - | chr5_3:55126214-55126233 | Msa0819030:CDS | 75.0% | |
GAGCGCCCGGCCATCGGTGT+TGG | - | chr5_3:55126214-55126233 | Msa0819030:CDS | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_3 | gene | 55125476 | 55127161 | 55125476 | ID=Msa0819030;Name=Msa0819030 |
chr5_3 | mRNA | 55125476 | 55127161 | 55125476 | ID=Msa0819030-mRNA-1;Parent=Msa0819030;Name=Msa0819030-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|-1|0|1|-1|1|1|0|561 |
chr5_3 | exon | 55125476 | 55127161 | 55125476 | ID=Msa0819030-mRNA-1:exon:16766;Parent=Msa0819030-mRNA-1 |
chr5_3 | CDS | 55125476 | 55127161 | 55125476 | ID=Msa0819030-mRNA-1:cds;Parent=Msa0819030-mRNA-1 |
Gene Sequence |
Protein sequence |