Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098480 | XP_024631073.1 | 96.667 | 360 | 12 | 0 | 1 | 360 | 1 | 360 | 0.0 | 732 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098480 | sp|Q8BVH9|METL6_MOUSE | 43.701 | 254 | 138 | 2 | 16 | 265 | 14 | 266 | 4.34e-65 | 211 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098480 | A0A396JIH7 | 96.667 | 360 | 12 | 0 | 1 | 360 | 1 | 360 | 0.0 | 732 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032580 | Msa0098480 | 0.812777 | 3.574615e-51 | -8.615850e-47 |
| Msa0043660 | Msa0098480 | 0.812790 | 3.550241e-51 | -8.615850e-47 |
| Msa0053600 | Msa0098480 | 0.895424 | 9.708625e-76 | -8.615850e-47 |
| Msa0054440 | Msa0098480 | 0.833181 | 6.180646e-56 | -8.615850e-47 |
| Msa0054480 | Msa0098480 | 0.803939 | 2.743308e-49 | -8.615850e-47 |
| Msa0079820 | Msa0098480 | 0.800265 | 1.562664e-48 | -8.615850e-47 |
| Msa0085360 | Msa0098480 | -0.800763 | 1.237380e-48 | -8.615850e-47 |
| Msa0098480 | Msa0099220 | 0.888592 | 5.150293e-73 | -8.615850e-47 |
| Msa0098480 | Msa0105620 | 0.809036 | 2.307961e-50 | -8.615850e-47 |
| Msa0098480 | Msa0115130 | 0.800685 | 1.283464e-48 | -8.615850e-47 |
| Msa0098480 | Msa0136070 | 0.809638 | 1.714365e-50 | -8.615850e-47 |
| Msa0098480 | Msa0137550 | 0.811658 | 6.270146e-51 | -8.615850e-47 |
| Msa0098480 | Msa0144370 | 0.803623 | 3.190760e-49 | -8.615850e-47 |
| Msa0098480 | Msa0146770 | 0.809306 | 2.019392e-50 | -8.615850e-47 |
| Msa0098480 | Msa0160550 | 0.806364 | 8.526457e-50 | -8.615850e-47 |
| Msa0098480 | Msa0165660 | 0.815983 | 6.987642e-52 | -8.615850e-47 |
| Msa0098480 | Msa0172970 | 0.820541 | 6.495581e-53 | -8.615850e-47 |
| Msa0098480 | Msa0187120 | 0.805705 | 1.173159e-49 | -8.615850e-47 |
| Msa0098480 | Msa0220720 | 0.800918 | 1.150068e-48 | -8.615850e-47 |
| Msa0098480 | Msa0231660 | 0.811987 | 5.317045e-51 | -8.615850e-47 |
| Msa0098480 | Msa0241470 | 0.800375 | 1.484354e-48 | -8.615850e-47 |
| Msa0098480 | Msa0241620 | 0.812938 | 3.295730e-51 | -8.615850e-47 |
| Msa0098480 | Msa0279700 | 0.818182 | 2.239462e-52 | -8.615850e-47 |
| Msa0098480 | Msa0306710 | 0.801306 | 9.580626e-49 | -8.615850e-47 |
| Msa0098480 | Msa0318980 | 0.801525 | 8.641565e-49 | -8.615850e-47 |
| Msa0098480 | Msa0372340 | 0.811511 | 6.750138e-51 | -8.615850e-47 |
| Msa0098480 | Msa0391320 | 0.811696 | 6.153901e-51 | -8.615850e-47 |
| Msa0098480 | Msa0542090 | 0.814474 | 1.512494e-51 | -8.615850e-47 |
| Msa0098480 | Msa0542130 | 0.815838 | 7.528782e-52 | -8.615850e-47 |
| Msa0098480 | Msa0602690 | 0.807232 | 5.589990e-50 | -8.615850e-47 |
| Msa0098480 | Msa0616240 | 0.818025 | 2.431044e-52 | -8.615850e-47 |
| Msa0098480 | Msa0643570 | 0.810181 | 1.309429e-50 | -8.615850e-47 |
| Msa0098480 | Msa0685140 | 0.812624 | 3.860269e-51 | -8.615850e-47 |
| Msa0098480 | Msa0699570 | 0.819090 | 1.393636e-52 | -8.615850e-47 |
| Msa0098480 | Msa0719420 | 0.810497 | 1.119171e-50 | -8.615850e-47 |
| Msa0098480 | Msa0789680 | 0.813091 | 3.050870e-51 | -8.615850e-47 |
| Msa0098480 | Msa0802410 | 0.815388 | 9.482534e-52 | -8.615850e-47 |
| Msa0098480 | Msa0909000 | -0.802724 | 4.897933e-49 | -8.615850e-47 |
| Msa0098480 | Msa0945440 | 0.805298 | 1.427899e-49 | -8.615850e-47 |
| Msa0098480 | Msa1009820 | 0.810188 | 1.305058e-50 | -8.615850e-47 |
| Msa0098480 | Msa1011680 | 0.817599 | 3.032975e-52 | -8.615850e-47 |
| Msa0098480 | Msa1039140 | 0.803367 | 3.605702e-49 | -8.615850e-47 |
| Msa0098480 | Msa1051200 | 0.808217 | 3.452267e-50 | -8.615850e-47 |
| Msa0098480 | Msa1137700 | 0.801912 | 7.197175e-49 | -8.615850e-47 |
| Msa0098480 | Msa1224810 | 0.803791 | 2.945450e-49 | -8.615850e-47 |
| Msa0098480 | Msa1344340 | 0.810897 | 9.171677e-51 | -8.615850e-47 |
| Msa0098480 | Msa1385100 | 0.897062 | 2.023719e-76 | -8.615850e-47 |
| Msa0098480 | Msa1446950 | 0.815661 | 8.246616e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098480 | MtrunA17_Chr1g0151151 | 96.667 | 360 | 12 | 0 | 1 | 360 | 1 | 360 | 0.0 | 732 |
| Msa0098480 | MtrunA17_Chr1g0190031 | 32.963 | 270 | 129 | 7 | 47 | 265 | 53 | 321 | 4.56e-34 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0098480 | AT2G26200.1 | 67.052 | 346 | 109 | 3 | 19 | 360 | 16 | 360 | 3.75e-168 | 481 |
| Msa0098480 | AT2G26200.2 | 66.346 | 312 | 101 | 2 | 19 | 326 | 16 | 327 | 1.33e-150 | 429 |
| Msa0098480 | AT1G54650.1 | 34.524 | 252 | 140 | 4 | 38 | 265 | 43 | 293 | 4.38e-38 | 138 |
| Msa0098480 | AT1G54650.3 | 34.524 | 252 | 140 | 4 | 38 | 265 | 63 | 313 | 5.99e-38 | 139 |
| Msa0098480 | AT1G54650.2 | 34.906 | 106 | 66 | 1 | 38 | 140 | 63 | 168 | 2.92e-13 | 68.6 |
Find 119 sgRNAs with CRISPR-Local
Find 485 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAATATTGTTTCCGGAAAA+AGG | 0.103649 | 1_3:+4456837 | Msa0098480:three_prime_UTR |
| GCAGATGCATGAAGACTTTA+AGG | 0.160121 | 1_3:+4453079 | Msa0098480:intron |
| TGTTATTGACAATTGGTTTA+TGG | 0.179744 | 1_3:+4457327 | Msa0098480:three_prime_UTR |
| AGGAGGAAAGAAAGTAATTT+TGG | 0.191683 | 1_3:+4451838 | Msa0098480:CDS |
| CTTTCAGCTGCATCACAATT+TGG | 0.194547 | 1_3:+4457250 | Msa0098480:three_prime_UTR |
| ATTTATTCCAAACCAAATTC+TGG | 0.197214 | 1_3:+4450011 | Msa0098480:CDS |
| ATTGATTTGCTTCTCACTTT+GGG | 0.212102 | 1_3:+4457608 | Msa0098480:three_prime_UTR |
| ACAAATTTATTCAAAGAAAA+TGG | 0.213631 | 1_3:+4455709 | Msa0098480:CDS |
| ACAAAGACCACTTCAGTTTC+AGG | 0.224017 | 1_3:-4449879 | None:intergenic |
| AACTTCAAAATGAGCTTAAA+TGG | 0.227473 | 1_3:-4457536 | None:intergenic |
| GAAAATCCCAATATTGTTTC+CGG | 0.249931 | 1_3:+4456830 | Msa0098480:three_prime_UTR |
| AGACGTTTCAGGCGAATTTC+CGG | 0.250447 | 1_3:-4457299 | None:intergenic |
| ATCATCAGCTTGAAATTAAA+AGG | 0.259253 | 1_3:+4457658 | Msa0098480:three_prime_UTR |
| CAGCTTGTATTAATTAATTC+AGG | 0.264476 | 1_3:-4457435 | None:intergenic |
| AAGGGTGAGACCCCAGAATT+TGG | 0.265459 | 1_3:-4450023 | None:intergenic |
| ATAACACTTCGAGACGTTTC+AGG | 0.273056 | 1_3:-4457310 | None:intergenic |
| AAAGAGAAGCTAAGAAATAT+TGG | 0.275974 | 1_3:+4450157 | Msa0098480:CDS |
| ATTCGCCTCAGCTTCTTTAC+TGG | 0.282944 | 1_3:-4455952 | None:intergenic |
| AATATGTTTAATGCACTATT+AGG | 0.285579 | 1_3:-4457373 | None:intergenic |
| CATTGATTTGCTTCTCACTT+TGG | 0.286037 | 1_3:+4457607 | Msa0098480:three_prime_UTR |
| TTTCAGCTGCATCACAATTT+GGG | 0.310864 | 1_3:+4457251 | Msa0098480:three_prime_UTR |
| TGTGGGAATCGCCCGATTAA+TGG | 0.311289 | 1_3:+4456793 | Msa0098480:CDS |
| ATTCTGGGGTCTCACCCTTT+TGG | 0.312133 | 1_3:+4450027 | Msa0098480:CDS |
| TGATGCTATCACAGGAAATA+TGG | 0.318795 | 1_3:-4452362 | None:intergenic |
| ATAAAGGAGATGAGTGATAG+AGG | 0.329154 | 1_3:+4457061 | Msa0098480:three_prime_UTR |
| CATCAAACCAGTTGATTTGC+AGG | 0.330099 | 1_3:-4456769 | None:intergenic |
| TTAATATTCTGCAAAACAAT+AGG | 0.332969 | 1_3:-4453397 | None:intergenic |
| CTTGATGGTGATAACAATAT+TGG | 0.341012 | 1_3:+4455978 | Msa0098480:CDS |
| CATCGACACGGCGAAAGATA+TGG | 0.341313 | 1_3:-4457216 | None:intergenic |
| GATCTCACGGCAATGGCATC+AGG | 0.356294 | 1_3:+4449951 | Msa0098480:CDS |
| GAAAACTAACCTTGTCTTTG+TGG | 0.362479 | 1_3:-4450197 | None:intergenic |
| TTTATATAGGAGAGATTCTC+TGG | 0.370599 | 1_3:+4455519 | Msa0098480:intron |
| CTCGAAGTGTTATTGACAAT+TGG | 0.375056 | 1_3:+4457320 | Msa0098480:three_prime_UTR |
| TTGACATGTCTGAGGGAGTC+GGG | 0.399247 | 1_3:+4456048 | Msa0098480:CDS |
| CAAGGACGGAAGCCATTAAT+CGG | 0.401931 | 1_3:-4456805 | None:intergenic |
| TTTATTCCAAACCAAATTCT+GGG | 0.404687 | 1_3:+4450012 | Msa0098480:CDS |
| CTCACCACGAGCTATTGAAT+TGG | 0.405150 | 1_3:+4452417 | Msa0098480:CDS |
| GGAGTCGGGGCTGACATGTT+TGG | 0.408447 | 1_3:+4456062 | Msa0098480:CDS |
| TTTCAAAGACCGGCATTACT+TGG | 0.412980 | 1_3:+4451689 | Msa0098480:CDS |
| ACGAGCTATTGAATTGGTTA+AGG | 0.421963 | 1_3:+4452423 | Msa0098480:CDS |
| TGAGACCCCAGAATTTGGTT+TGG | 0.422537 | 1_3:-4450018 | None:intergenic |
| CGCAGCAGCACATATCCATT+TGG | 0.435282 | 1_3:-4453532 | None:intergenic |
| CATGCATAAACAAAAGCATC+TGG | 0.435659 | 1_3:-4452388 | None:intergenic |
| AAGAGAAGCTAAGAAATATT+GGG | 0.435875 | 1_3:+4450158 | Msa0098480:CDS |
| CAACATACCTGCAAATCAAC+TGG | 0.438434 | 1_3:+4456762 | Msa0098480:CDS |
| TTGGAGTTAGGGTGTGGCAG+TGG | 0.441103 | 1_3:+4456863 | Msa0098480:three_prime_UTR |
| TTTCTCCATTTGCAGCCAAA+TGG | 0.443656 | 1_3:+4453517 | Msa0098480:intron |
| GTTTGCTGGTTTCAGGCGTT+GGG | 0.449293 | 1_3:+4455890 | Msa0098480:intron |
| GCATTACTTGGATAAAGAAT+GGG | 0.455655 | 1_3:+4451701 | Msa0098480:CDS |
| GGCATTACTTGGATAAAGAA+TGG | 0.457337 | 1_3:+4451700 | Msa0098480:CDS |
| ATTATGGAGATCAACCTTAG+AGG | 0.457883 | 1_3:+4456702 | Msa0098480:CDS |
| CAAAGTGAGAAGCAAATCAA+TGG | 0.462588 | 1_3:-4457606 | None:intergenic |
| CAAAGACCACTTCAGTTTCA+GGG | 0.463569 | 1_3:-4449878 | None:intergenic |
| AGCTTCTTTACTGGAAGAGT+TGG | 0.466430 | 1_3:-4455943 | None:intergenic |
| AGGGTAGGTACCTCTCCAAA+AGG | 0.473644 | 1_3:-4450042 | None:intergenic |
| TTGATTTGCTTCTCACTTTG+GGG | 0.473646 | 1_3:+4457609 | Msa0098480:three_prime_UTR |
| GCTGAGGCGAATCATCTTGA+TGG | 0.475133 | 1_3:+4455963 | Msa0098480:CDS |
| TTTACTGAACAGGTTGGGTG+TGG | 0.479098 | 1_3:+4452328 | Msa0098480:intron |
| CTGCTGCGAGACTATGCTAC+TGG | 0.479610 | 1_3:+4453547 | Msa0098480:CDS |
| CTTGCCTTCCGACGAGTATG+AGG | 0.495769 | 1_3:+4456088 | Msa0098480:CDS |
| TTCTGTTGATATTGTTACAA+TGG | 0.496744 | 1_3:+4453169 | Msa0098480:CDS |
| AGATCACATAGAAAGCATAA+AGG | 0.499104 | 1_3:+4457045 | Msa0098480:three_prime_UTR |
| CACGTTAATGCTTGATCTCA+CGG | 0.501128 | 1_3:+4449938 | Msa0098480:exon |
| GAGTTAGGGTGTGGCAGTGG+TGG | 0.504655 | 1_3:+4456866 | Msa0098480:three_prime_UTR |
| TGGAGATCAACCTTAGAGGC+TGG | 0.507549 | 1_3:+4456706 | Msa0098480:CDS |
| GAACAGGTTGGGTGTGGAGC+TGG | 0.509594 | 1_3:+4452334 | Msa0098480:intron |
| CAGCGACAAAAGCGTGAACA+TGG | 0.510092 | 1_3:-4453106 | None:intergenic |
| TATGTTATCTGCAGTGTCCC+CGG | 0.526619 | 1_3:+4453366 | Msa0098480:CDS |
| ATTTGCCACTTCAAACTCAA+AGG | 0.532302 | 1_3:+4449982 | Msa0098480:CDS |
| GTAGTTAGTTTAGTCAGCAA+TGG | 0.533457 | 1_3:-4456998 | None:intergenic |
| CTGAAACACAAAATACAGCT+TGG | 0.541542 | 1_3:-4455914 | None:intergenic |
| AATCTCTTTGCACAAATCAT+CGG | 0.542409 | 1_3:-4453138 | None:intergenic |
| GAGAACGTTCTACATATGAA+TGG | 0.543550 | 1_3:-4457635 | None:intergenic |
| TGCAACCTTTGAGTTTGAAG+TGG | 0.544850 | 1_3:-4449987 | None:intergenic |
| AAGAAGTTGAGAACCGCTCA+AGG | 0.548248 | 1_3:+4455764 | Msa0098480:CDS |
| AATCAACTGGTTTGATGCTG+TGG | 0.549620 | 1_3:+4456775 | Msa0098480:CDS |
| AGGGTATTGGAGTTAGGGTG+TGG | 0.549969 | 1_3:+4456857 | Msa0098480:three_prime_UTR |
| GTAACAATATCAACAGAAGA+TGG | 0.550718 | 1_3:-4453164 | None:intergenic |
| CAGTTGATTTGCAGGTATGT+TGG | 0.552753 | 1_3:-4456761 | None:intergenic |
| AAAGTGAGAAGCAAATCAAT+GGG | 0.556946 | 1_3:-4457605 | None:intergenic |
| AAACATATTGCTCTTCTGCA+TGG | 0.557086 | 1_3:+4457387 | Msa0098480:three_prime_UTR |
| ATTCTTTATCCAAGTAATGC+CGG | 0.560199 | 1_3:-4451698 | None:intergenic |
| ATCTGTAGCAACTACTCGAT+CGG | 0.561693 | 1_3:-4456918 | None:intergenic |
| TGCTACTGGAGACCTTGCTC+AGG | 0.567273 | 1_3:+4453561 | Msa0098480:CDS |
| TTAGTAGACAAGTGGCCTAC+CGG | 0.568314 | 1_3:+4457280 | Msa0098480:three_prime_UTR |
| CAAGGGAGTTGATAATGAAA+CGG | 0.570171 | 1_3:+4455782 | Msa0098480:CDS |
| AATGCTTGATCTCACGGCAA+TGG | 0.571311 | 1_3:+4449944 | Msa0098480:exon |
| TCTGGATATGATGCTATCAC+AGG | 0.575758 | 1_3:-4452370 | None:intergenic |
| ATTGACATGTCTGAGGGAGT+CGG | 0.576361 | 1_3:+4456047 | Msa0098480:CDS |
| AAGGACGGAAGCCATTAATC+GGG | 0.578586 | 1_3:-4456804 | None:intergenic |
| TAAAGGAGATGAGTGATAGA+GGG | 0.579905 | 1_3:+4457062 | Msa0098480:three_prime_UTR |
| GGGTAGGTACCTCTCCAAAA+GGG | 0.580724 | 1_3:-4450041 | None:intergenic |
| ATCTCACGGCAATGGCATCA+GGG | 0.581718 | 1_3:+4449952 | Msa0098480:CDS |
| CTCTTCCAGTAAAGAAGCTG+AGG | 0.582410 | 1_3:+4455947 | Msa0098480:CDS |
| TCATTATCAACTCCCTTGAG+CGG | 0.584655 | 1_3:-4455777 | None:intergenic |
| GGTTTATATTAGTAGACAAG+TGG | 0.593320 | 1_3:+4457272 | Msa0098480:three_prime_UTR |
| AGAGGGTTCAATGTCATCAT+CGG | 0.597470 | 1_3:+4457079 | Msa0098480:three_prime_UTR |
| GATCGAGTAGTTGCTACAGA+TGG | 0.598212 | 1_3:+4456920 | Msa0098480:three_prime_UTR |
| ATATGGCAAAGAATAAGTAC+AGG | 0.601647 | 1_3:-4457199 | None:intergenic |
| CTCTGTAATTGACATGTCTG+AGG | 0.603915 | 1_3:+4456040 | Msa0098480:CDS |
| ATCAACTGGTTTGATGCTGT+GGG | 0.608480 | 1_3:+4456776 | Msa0098480:CDS |
| TTATTCCAAACCAAATTCTG+GGG | 0.617390 | 1_3:+4450013 | Msa0098480:CDS |
| GATAAACCCTGAAACTGAAG+TGG | 0.621986 | 1_3:+4449872 | Msa0098480:five_prime_UTR |
| TGACATGTCTGAGGGAGTCG+GGG | 0.622122 | 1_3:+4456049 | Msa0098480:CDS |
| ATAGGAGAGATTCTCTGGCA+AGG | 0.623934 | 1_3:+4455524 | Msa0098480:intron |
| CAACAAAATCAACCTGAGCA+AGG | 0.630816 | 1_3:-4453573 | None:intergenic |
| TCTCACGGCAATGGCATCAG+GGG | 0.631546 | 1_3:+4449953 | Msa0098480:CDS |
| CTACAAACACCACAAAGACA+AGG | 0.634893 | 1_3:+4450188 | Msa0098480:CDS |
| CTTACCTCATACTCGTCGGA+AGG | 0.644138 | 1_3:-4456092 | None:intergenic |
| AGAAGTTGAGAACCGCTCAA+GGG | 0.645207 | 1_3:+4455765 | Msa0098480:CDS |
| GTTTCAGGCGAATTTCCGGT+AGG | 0.649486 | 1_3:-4457295 | None:intergenic |
| TGGTGATAACAATATTGGCA+CGG | 0.662682 | 1_3:+4455983 | Msa0098480:CDS |
| AAGCCTTACCTCATACTCGT+CGG | 0.662998 | 1_3:-4456096 | None:intergenic |
| AGCGACAAAAGCGTGAACAT+GGG | 0.663872 | 1_3:-4453105 | None:intergenic |
| GCAACGTTGGTTCATCGACA+CGG | 0.677877 | 1_3:-4457228 | None:intergenic |
| CATTACTTGGATAAAGAATG+GGG | 0.679169 | 1_3:+4451702 | Msa0098480:CDS |
| TCTGTAATTGACATGTCTGA+GGG | 0.683888 | 1_3:+4456041 | Msa0098480:CDS |
| GATGCAGCTGAAAGCAACGT+TGG | 0.684511 | 1_3:-4457241 | None:intergenic |
| TTAACCAATTCAATAGCTCG+TGG | 0.686527 | 1_3:-4452421 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTATTTTTTTATGTTTTT+TGG | + | chr1_3:4450119-4450138 | Msa0098480:intron | 10.0% |
| !!! | GATTTTTAATTTTTTTTTGT+TGG | + | chr1_3:4451502-4451521 | Msa0098480:intron | 10.0% |
| !! | ACATAAATACTTAAAAAATA+TGG | - | chr1_3:4451604-4451623 | None:intergenic | 10.0% |
| !! | AAAACAATAAGAATTATATT+TGG | - | chr1_3:4453694-4453713 | None:intergenic | 10.0% |
| !!! | ATCATCTTAAAATTTAAGTT+TGG | - | chr1_3:4450364-4450383 | None:intergenic | 15.0% |
| !!! | TTCATTTATTTTTCTATTAC+TGG | + | chr1_3:4450663-4450682 | Msa0098480:intron | 15.0% |
| !!! | TTTAATTTTTTTTTGTTGGT+TGG | + | chr1_3:4451506-4451525 | Msa0098480:intron | 15.0% |
| !!! | TTAATTTTTTTTTGTTGGTT+GGG | + | chr1_3:4451507-4451526 | Msa0098480:intron | 15.0% |
| !!! | TTAAGTAATCTTTTATTTCA+GGG | + | chr1_3:4451815-4451834 | Msa0098480:intron | 15.0% |
| !! | CTTATAAGTTTATCATATAA+AGG | + | chr1_3:4451910-4451929 | Msa0098480:intron | 15.0% |
| !! | TGTTATAGAACATAATTATA+TGG | + | chr1_3:4452124-4452143 | Msa0098480:intron | 15.0% |
| !!! | TTTCTGGTTAAAAAATAAAA+GGG | - | chr1_3:4453600-4453619 | None:intergenic | 15.0% |
| !!! | TTTTCTGGTTAAAAAATAAA+AGG | - | chr1_3:4453601-4453620 | None:intergenic | 15.0% |
| !! | AAAAAACCAAAATATTGTAT+AGG | - | chr1_3:4454338-4454357 | None:intergenic | 15.0% |
| !!! | TTTGATTCAAATTTGAAATT+AGG | - | chr1_3:4454999-4455018 | None:intergenic | 15.0% |
| !!! | GAGTTTAGATATTATTTTTT+AGG | - | chr1_3:4455084-4455103 | None:intergenic | 15.0% |
| !! | TTTCAATTCAAATTTGAATT+AGG | - | chr1_3:4455109-4455128 | None:intergenic | 15.0% |
| !! | ACAAATTTATTCAAAGAAAA+TGG | + | chr1_3:4455709-4455728 | Msa0098480:CDS | 15.0% |
| !! | CAACATTAATAAAAATACAA+GGG | - | chr1_3:4457573-4457592 | None:intergenic | 15.0% |
| !! | ACAACATTAATAAAAATACA+AGG | - | chr1_3:4457574-4457593 | None:intergenic | 15.0% |
| !!! | TTAAATTTTAAGATGATCAG+AGG | + | chr1_3:4450367-4450386 | Msa0098480:intron | 20.0% |
| !! | TGTAATGTAGTACTATATAT+CGG | + | chr1_3:4450510-4450529 | Msa0098480:intron | 20.0% |
| !! | ATATTTCTTGTGATGAATTA+GGG | - | chr1_3:4450551-4450570 | None:intergenic | 20.0% |
| !! | TATATTTCTTGTGATGAATT+AGG | - | chr1_3:4450552-4450571 | None:intergenic | 20.0% |
| !!! | CTCTATTTAAATTTTGCTTT+AGG | - | chr1_3:4450741-4450760 | None:intergenic | 20.0% |
| !! | ATAGAATTATTTACGATTGA+GGG | - | chr1_3:4450821-4450840 | None:intergenic | 20.0% |
| !! | TATAGAATTATTTACGATTG+AGG | - | chr1_3:4450822-4450841 | None:intergenic | 20.0% |
| !! | ATTAAAATGTCTCAGAATTA+CGG | - | chr1_3:4451481-4451500 | None:intergenic | 20.0% |
| !!! | GTTAAGTAATCTTTTATTTC+AGG | + | chr1_3:4451814-4451833 | Msa0098480:intron | 20.0% |
| !! | TTATAAGTTATAAACAGTAG+AGG | - | chr1_3:4451897-4451916 | None:intergenic | 20.0% |
| !!! | AAATAAGTTGAAAACAGATA+TGG | - | chr1_3:4452032-4452051 | None:intergenic | 20.0% |
| !!! | TTCTTATTTTAAGATATCTG+TGG | + | chr1_3:4452179-4452198 | Msa0098480:intron | 20.0% |
| !!! | TTTTGTTTATAGTTTCGATA+TGG | + | chr1_3:4452819-4452838 | Msa0098480:intron | 20.0% |
| !!! | CTCATTTATTTTTCGATAAA+AGG | + | chr1_3:4452940-4452959 | Msa0098480:intron | 20.0% |
| !!! | GTTTTTCTTTATTTTATGAC+AGG | - | chr1_3:4453002-4453021 | None:intergenic | 20.0% |
| !! | GTTGTTTATATACATCTAAT+TGG | + | chr1_3:4453034-4453053 | Msa0098480:intron | 20.0% |
| !! | TTAATATTCTGCAAAACAAT+AGG | - | chr1_3:4453400-4453419 | None:intergenic | 20.0% |
| !!! | AATGCATTTATTTTAGAGTT+TGG | + | chr1_3:4454039-4454058 | Msa0098480:intron | 20.0% |
| !! | AAAATAAGTTGTTCTTTACA+AGG | - | chr1_3:4454125-4454144 | None:intergenic | 20.0% |
| !! | CTGATATTCTCTTTATATAT+AGG | - | chr1_3:4454889-4454908 | None:intergenic | 20.0% |
| !! | CTATATATAAAGAGAATATC+AGG | + | chr1_3:4454887-4454906 | Msa0098480:intron | 20.0% |
| !! | AACATAAGAGTTTAAATGAA+GGG | - | chr1_3:4454932-4454951 | None:intergenic | 20.0% |
| !! | AAACATAAGAGTTTAAATGA+AGG | - | chr1_3:4454933-4454952 | None:intergenic | 20.0% |
| !!! | TATTTTTTAGGACTGATTTA+AGG | - | chr1_3:4455072-4455091 | None:intergenic | 20.0% |
| !!! | AAATTTTAAGCTTTAAGTTG+TGG | - | chr1_3:4455180-4455199 | None:intergenic | 20.0% |
| !!! | AATTTTAGCATTTCTTTTGT+TGG | + | chr1_3:4455420-4455439 | Msa0098480:intron | 20.0% |
| !!! | AGTATGATTTTTGTTTTGAT+GGG | - | chr1_3:4456344-4456363 | None:intergenic | 20.0% |
| !!! | TAGTATGATTTTTGTTTTGA+TGG | - | chr1_3:4456345-4456364 | None:intergenic | 20.0% |
| !! | TACTAAAGTTTCAAATCATA+AGG | - | chr1_3:4456466-4456485 | None:intergenic | 20.0% |
| !! | TAGTTTATGCACTATATATT+TGG | + | chr1_3:4456484-4456503 | Msa0098480:intron | 20.0% |
| !!! | AATATTAGATGCAACATTTT+TGG | - | chr1_3:4456972-4456991 | None:intergenic | 20.0% |
| !! | AATATGTTTAATGCACTATT+AGG | - | chr1_3:4457376-4457395 | None:intergenic | 20.0% |
| ! | ATTTATTCCAAACCAAATTC+TGG | + | chr1_3:4450011-4450030 | Msa0098480:CDS | 25.0% |
| ! | TTTATTCCAAACCAAATTCT+GGG | + | chr1_3:4450012-4450031 | Msa0098480:CDS | 25.0% |
| ! | AAAGAGAAGCTAAGAAATAT+TGG | + | chr1_3:4450157-4450176 | Msa0098480:CDS | 25.0% |
| ! | AAGAGAAGCTAAGAAATATT+GGG | + | chr1_3:4450158-4450177 | Msa0098480:CDS | 25.0% |
| ! | ACAAAACAAACTTAAGAGTA+AGG | - | chr1_3:4450222-4450241 | None:intergenic | 25.0% |
| !!! | TTAAGTTTGTTTTGTACTCA+TGG | + | chr1_3:4450227-4450246 | Msa0098480:intron | 25.0% |
| ! | TTAGATTATCACTTATCAGA+AGG | + | chr1_3:4450255-4450274 | Msa0098480:intron | 25.0% |
| ! | TCATATATAGACACAATAGA+AGG | + | chr1_3:4450445-4450464 | Msa0098480:intron | 25.0% |
| ! | CATATATAGACACAATAGAA+GGG | + | chr1_3:4450446-4450465 | Msa0098480:intron | 25.0% |
| ! | CATTATTTACCAATTGATAG+AGG | + | chr1_3:4451027-4451046 | Msa0098480:intron | 25.0% |
| !!! | ATTTTAAGACCTCTATCAAT+TGG | - | chr1_3:4451039-4451058 | None:intergenic | 25.0% |
| !!! | TTCAATGCTAGCTATTTTAT+TGG | - | chr1_3:4451215-4451234 | None:intergenic | 25.0% |
| ! | TTTCCAAAGACAAAAATATG+AGG | + | chr1_3:4451332-4451351 | Msa0098480:intron | 25.0% |
| ! | TTAAAATGTCTCAGAATTAC+GGG | - | chr1_3:4451480-4451499 | None:intergenic | 25.0% |
| !!! | GTAATTCTGAGACATTTTAA+TGG | + | chr1_3:4451480-4451499 | Msa0098480:intron | 25.0% |
| ! | CTTCAACTTAATGTTATGTT+GGG | + | chr1_3:4451541-4451560 | Msa0098480:intron | 25.0% |
| !! | ACTTCTTAAGAAAGCATAAT+TGG | - | chr1_3:4452304-4452323 | None:intergenic | 25.0% |
| !! | TTTCTCTATACCTTTTACAT+TGG | + | chr1_3:4452775-4452794 | Msa0098480:intron | 25.0% |
| ! | TTCTGTTGATATTGTTACAA+TGG | + | chr1_3:4453169-4453188 | Msa0098480:CDS | 25.0% |
| ! | TTTCAATAATAATAGCACAG+AGG | - | chr1_3:4453298-4453317 | None:intergenic | 25.0% |
| ! | CATGAATAAGTTATCTAACA+AGG | - | chr1_3:4453478-4453497 | None:intergenic | 25.0% |
| ! | GAATTATATTTGGATTCTTC+CGG | - | chr1_3:4453684-4453703 | None:intergenic | 25.0% |
| ! | AAATTAATATCTGTTTGACG+AGG | + | chr1_3:4453766-4453785 | Msa0098480:intron | 25.0% |
| ! | CTTTATGGCAAAAGATAAAA+TGG | - | chr1_3:4453834-4453853 | None:intergenic | 25.0% |
| !! | ATGAAGAAAGTTTTCGAAAA+AGG | + | chr1_3:4454147-4454166 | Msa0098480:intron | 25.0% |
| ! | AATATTGTATAGGATGAAGA+TGG | - | chr1_3:4454328-4454347 | None:intergenic | 25.0% |
| !! | CTTCATCCTATACAATATTT+TGG | + | chr1_3:4454329-4454348 | Msa0098480:intron | 25.0% |
| ! | TAGAGAGAAATGAAGAATTT+GGG | - | chr1_3:4454633-4454652 | None:intergenic | 25.0% |
| ! | TTAGAGAGAAATGAAGAATT+TGG | - | chr1_3:4454634-4454653 | None:intergenic | 25.0% |
| ! | GTTTAAATGAAGGGTAAAAT+TGG | - | chr1_3:4454923-4454942 | None:intergenic | 25.0% |
| ! | GCAGGAAGTAAAAAATATTA+TGG | - | chr1_3:4455310-4455329 | None:intergenic | 25.0% |
| ! | ATTCATCAACCAATATTTGA+CGG | - | chr1_3:4455463-4455482 | None:intergenic | 25.0% |
| !! | TGTAGAACTTCTAAAAGAAT+AGG | - | chr1_3:4456186-4456205 | None:intergenic | 25.0% |
| !!! | TTCTTTTAGAAGTTCTACAA+AGG | + | chr1_3:4456187-4456206 | Msa0098480:intron | 25.0% |
| !!! | TCTTTTAGAAGTTCTACAAA+GGG | + | chr1_3:4456188-4456207 | Msa0098480:intron | 25.0% |
| ! | TTAAATAAGCTAATTCAAGC+AGG | - | chr1_3:4456214-4456233 | None:intergenic | 25.0% |
| !! | GCTTGAATTAGCTTATTTAA+TGG | + | chr1_3:4456214-4456233 | Msa0098480:intron | 25.0% |
| !!! | TATGTTGATGATTTGAAACT+TGG | - | chr1_3:4456397-4456416 | None:intergenic | 25.0% |
| !!! | GGTATTATTTTTGTTTTCGT+AGG | + | chr1_3:4456505-4456524 | Msa0098480:intron | 25.0% |
| !!! | TTGTACTGATTTTCTTGTTA+TGG | + | chr1_3:4456656-4456675 | Msa0098480:intron | 25.0% |
| !!! | TTTTGATTCCCAATAGATTA+TGG | + | chr1_3:4456686-4456705 | Msa0098480:intron | 25.0% |
| ! | TAACTACAAAAAAACTTGAG+TGG | + | chr1_3:4457014-4457033 | Msa0098480:three_prime_UTR | 25.0% |
| ! | AACTACAAAAAAACTTGAGT+GGG | + | chr1_3:4457015-4457034 | Msa0098480:three_prime_UTR | 25.0% |
| !! | TGTTATTGACAATTGGTTTA+TGG | + | chr1_3:4457327-4457346 | Msa0098480:three_prime_UTR | 25.0% |
| ! | CAGCTTGTATTAATTAATTC+AGG | - | chr1_3:4457438-4457457 | None:intergenic | 25.0% |
| !!! | AGAAGTAGAATGTTTTTTAC+AGG | + | chr1_3:4457488-4457507 | Msa0098480:three_prime_UTR | 25.0% |
| ! | AACTTCAAAATGAGCTTAAA+TGG | - | chr1_3:4457539-4457558 | None:intergenic | 25.0% |
| ! | ATCATCAGCTTGAAATTAAA+AGG | + | chr1_3:4457658-4457677 | Msa0098480:three_prime_UTR | 25.0% |
| TTATTCCAAACCAAATTCTG+GGG | + | chr1_3:4450013-4450032 | Msa0098480:CDS | 30.0% | |
| !! | ACACTTCTAGTTTGATTTGT+AGG | - | chr1_3:4450281-4450300 | None:intergenic | 30.0% |
| AATGATGTCTCATCTAATGT+GGG | - | chr1_3:4450304-4450323 | None:intergenic | 30.0% | |
| ! | AGCTGGTCAAATGTATTTTT+AGG | + | chr1_3:4450715-4450734 | Msa0098480:intron | 30.0% |
| ! | TACACTGATTATAGCAAAAG+AGG | - | chr1_3:4450926-4450945 | None:intergenic | 30.0% |
| ATGTCAATCTAATTCGATGT+CGG | - | chr1_3:4451156-4451175 | None:intergenic | 30.0% | |
| ! | CTTAAATTCTTTTTGCCTTC+AGG | - | chr1_3:4451182-4451201 | None:intergenic | 30.0% |
| CTGAAGGCAAAAAGAATTTA+AGG | + | chr1_3:4451180-4451199 | Msa0098480:intron | 30.0% | |
| GCTCAAATAGTATGTAAATG+AGG | - | chr1_3:4451271-4451290 | None:intergenic | 30.0% | |
| !!! | TTTAGGCCCCTAATTTTTTT+AGG | - | chr1_3:4451374-4451393 | None:intergenic | 30.0% |
| GCTTCAACTTAATGTTATGT+TGG | + | chr1_3:4451540-4451559 | Msa0098480:intron | 30.0% | |
| ! | GTCTTTGAAAAACTGAAGAA+AGG | - | chr1_3:4451679-4451698 | None:intergenic | 30.0% |
| !! | TTCTTCAGTTTTTCAAAGAC+CGG | + | chr1_3:4451679-4451698 | Msa0098480:intron | 30.0% |
| ATTCTTTATCCAAGTAATGC+CGG | - | chr1_3:4451701-4451720 | None:intergenic | 30.0% | |
| GCATTACTTGGATAAAGAAT+GGG | + | chr1_3:4451701-4451720 | Msa0098480:CDS | 30.0% | |
| CATTACTTGGATAAAGAATG+GGG | + | chr1_3:4451702-4451721 | Msa0098480:CDS | 30.0% | |
| !! | AGTAATCTTTTATTTCAGGG+AGG | + | chr1_3:4451818-4451837 | Msa0098480:intron | 30.0% |
| ! | AGGAGGAAAGAAAGTAATTT+TGG | + | chr1_3:4451838-4451857 | Msa0098480:CDS | 30.0% |
| ! | AGGAAAGAAAGTAATTTTGG+AGG | + | chr1_3:4451841-4451860 | Msa0098480:CDS | 30.0% |
| ACTTATTTCCATAAGCTTTC+TGG | + | chr1_3:4452044-4452063 | Msa0098480:intron | 30.0% | |
| ATGTAAATCGATCTAAGTGT+CGG | + | chr1_3:4452574-4452593 | Msa0098480:intron | 30.0% | |
| TGTTTCAAATAGATAGACCT+AGG | + | chr1_3:4452626-4452645 | Msa0098480:intron | 30.0% | |
| GTTTCAAATAGATAGACCTA+GGG | + | chr1_3:4452627-4452646 | Msa0098480:intron | 30.0% | |
| TTTCAAATAGATAGACCTAG+GGG | + | chr1_3:4452628-4452647 | Msa0098480:intron | 30.0% | |
| !! | AAAGAGTATCTAGCTATGAA+AGG | - | chr1_3:4452657-4452676 | None:intergenic | 30.0% |
| CAATTTACGTCCAATGTAAA+AGG | - | chr1_3:4452788-4452807 | None:intergenic | 30.0% | |
| TTATAGTTTCGATATGGTGT+TGG | + | chr1_3:4452825-4452844 | Msa0098480:intron | 30.0% | |
| AATCTCTTTGCACAAATCAT+CGG | - | chr1_3:4453141-4453160 | None:intergenic | 30.0% | |
| GTAACAATATCAACAGAAGA+TGG | - | chr1_3:4453167-4453186 | None:intergenic | 30.0% | |
| ! | TTATATTGAAGTACCTGACA+TGG | + | chr1_3:4453331-4453350 | Msa0098480:intron | 30.0% |
| AAATATCTGTTTACCATGTC+AGG | - | chr1_3:4453347-4453366 | None:intergenic | 30.0% | |
| ! | AAAACAATAGGCATCTTTTC+CGG | - | chr1_3:4453388-4453407 | None:intergenic | 30.0% |
| ATGCCTATATTGTTGTATCA+CGG | - | chr1_3:4453898-4453917 | None:intergenic | 30.0% | |
| TACAACAATATAGGCATACA+TGG | + | chr1_3:4453901-4453920 | Msa0098480:intron | 30.0% | |
| AATAAGGAAAGAACAGAACA+AGG | - | chr1_3:4454290-4454309 | None:intergenic | 30.0% | |
| AGTAGTTAGACTTAAGTATG+CGG | + | chr1_3:4454448-4454467 | Msa0098480:intron | 30.0% | |
| TAGATACCATGATAAAGTAG+AGG | - | chr1_3:4454657-4454676 | None:intergenic | 30.0% | |
| !! | TTTTGAGAAAAGGGATTATG+AGG | - | chr1_3:4454763-4454782 | None:intergenic | 30.0% |
| !!! | CATTGTTGGTTTTGAGAAAA+GGG | - | chr1_3:4454772-4454791 | None:intergenic | 30.0% |
| AGGTATAGAAGATAAAGCTA+CGG | - | chr1_3:4454869-4454888 | None:intergenic | 30.0% | |
| AATGAAGGGTAAAATTGGAA+GGG | - | chr1_3:4454918-4454937 | None:intergenic | 30.0% | |
| AAATGAAGGGTAAAATTGGA+AGG | - | chr1_3:4454919-4454938 | None:intergenic | 30.0% | |
| AAGCTTAAAATTTGTCACGA+TGG | + | chr1_3:4455187-4455206 | Msa0098480:intron | 30.0% | |
| TTCAACTGTGTAAACAATCT+TGG | + | chr1_3:4455267-4455286 | Msa0098480:intron | 30.0% | |
| TGCTAAAATTCCATGAAACA+CGG | - | chr1_3:4455410-4455429 | None:intergenic | 30.0% | |
| ATTGTTTGACCGTCAAATAT+TGG | + | chr1_3:4455451-4455470 | Msa0098480:intron | 30.0% | |
| ! | GTTGATGAATTTCCTTGTTT+GGG | + | chr1_3:4455473-4455492 | Msa0098480:intron | 30.0% |
| ! | AATTATTGATTGCCCAAACA+AGG | - | chr1_3:4455488-4455507 | None:intergenic | 30.0% |
| TTTATATAGGAGAGATTCTC+TGG | + | chr1_3:4455519-4455538 | Msa0098480:intron | 30.0% | |
| ! | AGCGATAACTTTTATGTTAG+AGG | + | chr1_3:4455558-4455577 | Msa0098480:CDS | 30.0% |
| ! | AACTTTTATGTTAGAGGTGA+CGG | + | chr1_3:4455564-4455583 | Msa0098480:CDS | 30.0% |
| CATGTGAACTAAAGATAACA+TGG | - | chr1_3:4455611-4455630 | None:intergenic | 30.0% | |
| !! | TTTATTTTCCTTCTGTTTGC+TGG | + | chr1_3:4455876-4455895 | Msa0098480:intron | 30.0% |
| !! | CTTGATGGTGATAACAATAT+TGG | + | chr1_3:4455978-4455997 | Msa0098480:CDS | 30.0% |
| GCAATCGAGAAAAATAATTG+TGG | + | chr1_3:4456005-4456024 | Msa0098480:CDS | 30.0% | |
| ! | TTTCATCTTTTTGCTCCATT+TGG | + | chr1_3:4456117-4456136 | Msa0098480:intron | 30.0% |
| TCATCAACATAAAACAACCA+AGG | + | chr1_3:4456406-4456425 | Msa0098480:intron | 30.0% | |
| ! | TATGTTTAAGATTTGAGCCT+TGG | - | chr1_3:4456426-4456445 | None:intergenic | 30.0% |
| AGATCTTGCATAAGATTGAA+AGG | - | chr1_3:4456578-4456597 | None:intergenic | 30.0% | |
| GTTGATCTCCATAATCTATT+GGG | - | chr1_3:4456697-4456716 | None:intergenic | 30.0% | |
| GAAAATCCCAATATTGTTTC+CGG | + | chr1_3:4456830-4456849 | Msa0098480:three_prime_UTR | 30.0% | |
| ! | CTTTTTCCGGAAACAATATT+GGG | - | chr1_3:4456839-4456858 | None:intergenic | 30.0% |
| CAATATTGTTTCCGGAAAAA+GGG | + | chr1_3:4456838-4456857 | Msa0098480:three_prime_UTR | 30.0% | |
| ACTACAAAAAAACTTGAGTG+GGG | + | chr1_3:4457016-4457035 | Msa0098480:three_prime_UTR | 30.0% | |
| ! | AGATCACATAGAAAGCATAA+AGG | + | chr1_3:4457045-4457064 | Msa0098480:three_prime_UTR | 30.0% |
| ATATGGCAAAGAATAAGTAC+AGG | - | chr1_3:4457202-4457221 | None:intergenic | 30.0% | |
| GGTTTATATTAGTAGACAAG+TGG | + | chr1_3:4457272-4457291 | Msa0098480:three_prime_UTR | 30.0% | |
| AAAGTGAGAAGCAAATCAAT+GGG | - | chr1_3:4457608-4457627 | None:intergenic | 30.0% | |
| !! | ATTGATTTGCTTCTCACTTT+GGG | + | chr1_3:4457608-4457627 | Msa0098480:three_prime_UTR | 30.0% |
| ! | ATTTGCCACTTCAAACTCAA+AGG | + | chr1_3:4449982-4450001 | Msa0098480:CDS | 35.0% |
| GAGAAGGAAAGAAAGAAAGA+GGG | - | chr1_3:4450064-4450083 | None:intergenic | 35.0% | |
| TGAGAAGGAAAGAAAGAAAG+AGG | - | chr1_3:4450065-4450084 | None:intergenic | 35.0% | |
| GAAAACTAACCTTGTCTTTG+TGG | - | chr1_3:4450200-4450219 | None:intergenic | 35.0% | |
| GAATGATGTCTCATCTAATG+TGG | - | chr1_3:4450305-4450324 | None:intergenic | 35.0% | |
| AGAGGCTATCCATTATTTGT+TGG | + | chr1_3:4450385-4450404 | Msa0098480:intron | 35.0% | |
| CTTAGTGGTCCAACAAATAA+TGG | - | chr1_3:4450397-4450416 | None:intergenic | 35.0% | |
| ! | CATTATTTGTTGGACCACTA+AGG | + | chr1_3:4450395-4450414 | Msa0098480:intron | 35.0% |
| ! | AATCTAAAGTGTGACCTTAG+TGG | - | chr1_3:4450412-4450431 | None:intergenic | 35.0% |
| ATAGACACAATAGAAGGGAA+AGG | + | chr1_3:4450451-4450470 | Msa0098480:intron | 35.0% | |
| TAGACACAATAGAAGGGAAA+GGG | + | chr1_3:4450452-4450471 | Msa0098480:intron | 35.0% | |
| TATAGTTGCTCTACAATCAC+AGG | + | chr1_3:4450578-4450597 | Msa0098480:intron | 35.0% | |
| AAAATACATTTGACCAGCTC+TGG | - | chr1_3:4450714-4450733 | None:intergenic | 35.0% | |
| TTTACGATTGAGGGAACTTA+TGG | - | chr1_3:4450812-4450831 | None:intergenic | 35.0% | |
| GTCAGCTAGAAATCAAACTT+TGG | + | chr1_3:4450877-4450896 | Msa0098480:intron | 35.0% | |
| TTAGATTGACATGAACCTGA+AGG | + | chr1_3:4451164-4451183 | Msa0098480:intron | 35.0% | |
| CAAAGACAAAAATATGAGGC+CGG | + | chr1_3:4451336-4451355 | Msa0098480:intron | 35.0% | |
| ACACGGAGCCTAAAAAAATT+AGG | + | chr1_3:4451363-4451382 | Msa0098480:intron | 35.0% | |
| CACGGAGCCTAAAAAAATTA+GGG | + | chr1_3:4451364-4451383 | Msa0098480:intron | 35.0% | |
| ACGGAGCCTAAAAAAATTAG+GGG | + | chr1_3:4451365-4451384 | Msa0098480:intron | 35.0% | |
| GGCATTACTTGGATAAAGAA+TGG | + | chr1_3:4451700-4451719 | Msa0098480:CDS | 35.0% | |
| !! | ATTACTTTTCAGTGAGTGGA+AGG | + | chr1_3:4451727-4451746 | Msa0098480:intron | 35.0% |
| ATTACTTAACTCATCAGCAC+AGG | - | chr1_3:4451804-4451823 | None:intergenic | 35.0% | |
| !! | AATCTTTTATTTCAGGGAGG+AGG | + | chr1_3:4451821-4451840 | Msa0098480:intron | 35.0% |
| ! | GAGGTTAAAGAGCATAATGT+GGG | - | chr1_3:4451878-4451897 | None:intergenic | 35.0% |
| ! | AGAGGTTAAAGAGCATAATG+TGG | - | chr1_3:4451879-4451898 | None:intergenic | 35.0% |
| ACTCATTTGAACTTGTCTAC+TGG | + | chr1_3:4451951-4451970 | Msa0098480:intron | 35.0% | |
| TAAGCTATCCAGAAAGCTTA+TGG | - | chr1_3:4452055-4452074 | None:intergenic | 35.0% | |
| !! | AGAAGTGTTGTTTACTGAAC+AGG | + | chr1_3:4452318-4452337 | Msa0098480:intron | 35.0% |
| ! | TGTTGTTTACTGAACAGGTT+GGG | + | chr1_3:4452323-4452342 | Msa0098480:intron | 35.0% |
| TGATGCTATCACAGGAAATA+TGG | - | chr1_3:4452365-4452384 | None:intergenic | 35.0% | |
| !! | CATGCATAAACAAAAGCATC+TGG | - | chr1_3:4452391-4452410 | None:intergenic | 35.0% |
| TTAACCAATTCAATAGCTCG+TGG | - | chr1_3:4452424-4452443 | None:intergenic | 35.0% | |
| ACGAGCTATTGAATTGGTTA+AGG | + | chr1_3:4452423-4452442 | Msa0098480:CDS | 35.0% | |
| GCTATTGAATTGGTTAAGGT+TGG | + | chr1_3:4452427-4452446 | Msa0098480:intron | 35.0% | |
| !! | TGAGACTTTCGCGTTTTAAT+GGG | - | chr1_3:4452704-4452723 | None:intergenic | 35.0% |
| GTCACAGTTCAACTAACTTT+AGG | + | chr1_3:4452898-4452917 | Msa0098480:intron | 35.0% | |
| ! | AAACAATAGGCATCTTTTCC+GGG | - | chr1_3:4453387-4453406 | None:intergenic | 35.0% |
| CTAATCATGTCTATGATGAC+CGG | + | chr1_3:4453662-4453681 | Msa0098480:intron | 35.0% | |
| ! | GTGTTGGTGTATATGCTTTA+TGG | - | chr1_3:4453849-4453868 | None:intergenic | 35.0% |
| TTTGTCGAATCTCTATGACA+TGG | - | chr1_3:4453928-4453947 | None:intergenic | 35.0% | |
| ! | GATTCGACAAAGTTTTACGT+TGG | + | chr1_3:4453937-4453956 | Msa0098480:intron | 35.0% |
| GGAGAAGAAAAGACTGAAAA+AGG | - | chr1_3:4454070-4454089 | None:intergenic | 35.0% | |
| GTTAGATTCAGCTTCTCATA+AGG | - | chr1_3:4454091-4454110 | None:intergenic | 35.0% | |
| ! | ATGAGGAGAAGCATAAAACT+AGG | - | chr1_3:4454240-4454259 | None:intergenic | 35.0% |
| GTTCTGTTCTTTCCTTATTC+TGG | + | chr1_3:4454291-4454310 | Msa0098480:intron | 35.0% | |
| TACACACACTTAACACGTAT+GGG | - | chr1_3:4454366-4454385 | None:intergenic | 35.0% | |
| TTACACACACTTAACACGTA+TGG | - | chr1_3:4454367-4454386 | None:intergenic | 35.0% | |
| GTTCTGTTGTACTAGTTAGT+TGG | + | chr1_3:4454514-4454533 | Msa0098480:intron | 35.0% | |
| ATGTACTCACTCTATAGTTC+AGG | + | chr1_3:4454583-4454602 | Msa0098480:intron | 35.0% | |
| TGTACTCACTCTATAGTTCA+GGG | + | chr1_3:4454584-4454603 | Msa0098480:intron | 35.0% | |
| CTCTAACCTCTACTTTATCA+TGG | + | chr1_3:4454648-4454667 | Msa0098480:intron | 35.0% | |
| !! | TGGTATCTAGAGTTTTTCTC+TGG | + | chr1_3:4454668-4454687 | Msa0098480:intron | 35.0% |
| !! | GGTATCTAGAGTTTTTCTCT+GGG | + | chr1_3:4454669-4454688 | Msa0098480:intron | 35.0% |
| ! | TTTTAACCAACACAGTTGAG+CGG | - | chr1_3:4454739-4454758 | None:intergenic | 35.0% |
| !!! | CCATTGTTGGTTTTGAGAAA+AGG | - | chr1_3:4454773-4454792 | None:intergenic | 35.0% |
| ! | CCTTTTCTCAAAACCAACAA+TGG | + | chr1_3:4454770-4454789 | Msa0098480:intron | 35.0% |
| CAAACACGTCATACAATTGT+TGG | + | chr1_3:4455351-4455370 | Msa0098480:intron | 35.0% | |
| !! | GGTTGATGAATTTCCTTGTT+TGG | + | chr1_3:4455472-4455491 | Msa0098480:intron | 35.0% |
| !! | CAAGGGAGTTGATAATGAAA+CGG | + | chr1_3:4455782-4455801 | Msa0098480:CDS | 35.0% |
| ACTGAGCAAAAATGAACAAG+TGG | - | chr1_3:4455821-4455840 | None:intergenic | 35.0% | |
| CTGAAACACAAAATACAGCT+TGG | - | chr1_3:4455917-4455936 | None:intergenic | 35.0% | |
| ! | GCTGTATTTTGTGTTTCAGA+TGG | + | chr1_3:4455918-4455937 | Msa0098480:CDS | 35.0% |
| TGGTGATAACAATATTGGCA+CGG | + | chr1_3:4455983-4456002 | Msa0098480:CDS | 35.0% | |
| TCTGTAATTGACATGTCTGA+GGG | + | chr1_3:4456041-4456060 | Msa0098480:CDS | 35.0% | |
| GGCATAATCACTTATAAGCA+AGG | + | chr1_3:4456235-4456254 | Msa0098480:intron | 35.0% | |
| AGATCTAGCATAAGATCGAA+AGG | + | chr1_3:4456270-4456289 | Msa0098480:intron | 35.0% | |
| GATCTAGCATAAGATCGAAA+GGG | + | chr1_3:4456271-4456290 | Msa0098480:intron | 35.0% | |
| ATCTAGCATAAGATCGAAAG+GGG | + | chr1_3:4456272-4456291 | Msa0098480:intron | 35.0% | |
| ! | GATGATTTGAAACTTGGAGT+AGG | - | chr1_3:4456391-4456410 | None:intergenic | 35.0% |
| AAGATCACAACCAAGATCAA+AGG | - | chr1_3:4456533-4456552 | None:intergenic | 35.0% | |
| ! | AAAAGACATGGTCGCTATTT+TGG | + | chr1_3:4456621-4456640 | Msa0098480:intron | 35.0% |
| GGTTGATCTCCATAATCTAT+TGG | - | chr1_3:4456698-4456717 | None:intergenic | 35.0% | |
| ATTATGGAGATCAACCTTAG+AGG | + | chr1_3:4456702-4456721 | Msa0098480:CDS | 35.0% | |
| !!! | TTTTGAAATTCCAGCCTCTA+AGG | - | chr1_3:4456719-4456738 | None:intergenic | 35.0% |
| ! | CAATATTGGGATTTTCTGCA+AGG | - | chr1_3:4456826-4456845 | None:intergenic | 35.0% |
| ! | CCTTTTTCCGGAAACAATAT+TGG | - | chr1_3:4456840-4456859 | None:intergenic | 35.0% |
| CCAATATTGTTTCCGGAAAA+AGG | + | chr1_3:4456837-4456856 | Msa0098480:three_prime_UTR | 35.0% | |
| ! | TAACTCCAATACCCTTTTTC+CGG | - | chr1_3:4456852-4456871 | None:intergenic | 35.0% |
| !! | GAAAAAGGGTATTGGAGTTA+GGG | + | chr1_3:4456852-4456871 | Msa0098480:three_prime_UTR | 35.0% |
| !!! | ATGCAACATTTTTGGCTAAC+AGG | - | chr1_3:4456964-4456983 | None:intergenic | 35.0% |
| ! | GTAGTTAGTTTAGTCAGCAA+TGG | - | chr1_3:4457001-4457020 | None:intergenic | 35.0% |
| ATAAAGGAGATGAGTGATAG+AGG | + | chr1_3:4457061-4457080 | Msa0098480:three_prime_UTR | 35.0% | |
| TAAAGGAGATGAGTGATAGA+GGG | + | chr1_3:4457062-4457081 | Msa0098480:three_prime_UTR | 35.0% | |
| ! | TCTTTTGCAGTTGCAAACAA+AGG | - | chr1_3:4457139-4457158 | None:intergenic | 35.0% |
| TTTCAGCTGCATCACAATTT+GGG | + | chr1_3:4457251-4457270 | Msa0098480:three_prime_UTR | 35.0% | |
| ! | CTCGAAGTGTTATTGACAAT+TGG | + | chr1_3:4457320-4457339 | Msa0098480:three_prime_UTR | 35.0% |
| AAACATATTGCTCTTCTGCA+TGG | + | chr1_3:4457387-4457406 | Msa0098480:three_prime_UTR | 35.0% | |
| CAAAGTGAGAAGCAAATCAA+TGG | - | chr1_3:4457609-4457628 | None:intergenic | 35.0% | |
| !! | CATTGATTTGCTTCTCACTT+TGG | + | chr1_3:4457607-4457626 | Msa0098480:three_prime_UTR | 35.0% |
| !! | TTGATTTGCTTCTCACTTTG+GGG | + | chr1_3:4457609-4457628 | Msa0098480:three_prime_UTR | 35.0% |
| GAGAACGTTCTACATATGAA+TGG | - | chr1_3:4457638-4457657 | None:intergenic | 35.0% | |
| GATAAACCCTGAAACTGAAG+TGG | + | chr1_3:4449872-4449891 | Msa0098480:five_prime_UTR | 40.0% | |
| CAAAGACCACTTCAGTTTCA+GGG | - | chr1_3:4449881-4449900 | None:intergenic | 40.0% | |
| ACAAAGACCACTTCAGTTTC+AGG | - | chr1_3:4449882-4449901 | None:intergenic | 40.0% | |
| CACGTTAATGCTTGATCTCA+CGG | + | chr1_3:4449938-4449957 | Msa0098480:exon | 40.0% | |
| ! | TGCAACCTTTGAGTTTGAAG+TGG | - | chr1_3:4449990-4450009 | None:intergenic | 40.0% |
| AGGAAAGAAAGAAAGAGGGT+AGG | - | chr1_3:4450060-4450079 | None:intergenic | 40.0% | |
| CTACAAACACCACAAAGACA+AGG | + | chr1_3:4450188-4450207 | Msa0098480:CDS | 40.0% | |
| !! | ACTGCACAAGCAAGTTTTGT+AGG | + | chr1_3:4450325-4450344 | Msa0098480:intron | 40.0% |
| AGACACAATAGAAGGGAAAG+GGG | + | chr1_3:4450453-4450472 | Msa0098480:intron | 40.0% | |
| !! | TTGGTTTGTCACATTGTGAG+AGG | + | chr1_3:4450896-4450915 | Msa0098480:intron | 40.0% |
| TCGAACTTGCAAACGAACTA+CGG | + | chr1_3:4451243-4451262 | Msa0098480:intron | 40.0% | |
| !! | CGGCCTCATATTTTTGTCTT+TGG | - | chr1_3:4451338-4451357 | None:intergenic | 40.0% |
| ! | TAGCATCTAGGACTAAACCA+GGG | - | chr1_3:4451430-4451449 | None:intergenic | 40.0% |
| TGGTTTAGTCCTAGATGCTA+GGG | + | chr1_3:4451430-4451449 | Msa0098480:intron | 40.0% | |
| ! | TGTTGGGTTCTTCTTGTTTG+TGG | + | chr1_3:4451557-4451576 | Msa0098480:intron | 40.0% |
| TTTCAAAGACCGGCATTACT+TGG | + | chr1_3:4451689-4451708 | Msa0098480:CDS | 40.0% | |
| !! | GGAGATTACTTTTCAGTGAG+TGG | + | chr1_3:4451723-4451742 | Msa0098480:intron | 40.0% |
| !! | GTGTTGTTTACTGAACAGGT+TGG | + | chr1_3:4452322-4452341 | Msa0098480:intron | 40.0% |
| TCTGGATATGATGCTATCAC+AGG | - | chr1_3:4452373-4452392 | None:intergenic | 40.0% | |
| TTTGCACAGTAGCTTGACTT+TGG | + | chr1_3:4452508-4452527 | Msa0098480:intron | 40.0% | |
| ! | GTGAGACTTTCGCGTTTTAA+TGG | - | chr1_3:4452705-4452724 | None:intergenic | 40.0% |
| ! | TAGTTTCGATATGGTGTTGG+TGG | + | chr1_3:4452828-4452847 | Msa0098480:intron | 40.0% |
| !! | ACCAGGAAGCACATTTTGAA+GGG | - | chr1_3:4452868-4452887 | None:intergenic | 40.0% |
| TCTTCATGCATCTGCAGTTA+AGG | - | chr1_3:4453074-4453093 | None:intergenic | 40.0% | |
| GCAGATGCATGAAGACTTTA+AGG | + | chr1_3:4453079-4453098 | Msa0098480:intron | 40.0% | |
| ! | AACAATAGGCATCTTTTCCG+GGG | - | chr1_3:4453386-4453405 | None:intergenic | 40.0% |
| TTTGGCTGCAAATGGAGAAA+GGG | - | chr1_3:4453517-4453536 | None:intergenic | 40.0% | |
| ATTTGGCTGCAAATGGAGAA+AGG | - | chr1_3:4453518-4453537 | None:intergenic | 40.0% | |
| TTTCTCCATTTGCAGCCAAA+TGG | + | chr1_3:4453517-4453536 | Msa0098480:intron | 40.0% | |
| CATATCCATTTGGCTGCAAA+TGG | - | chr1_3:4453525-4453544 | None:intergenic | 40.0% | |
| CAACAAAATCAACCTGAGCA+AGG | - | chr1_3:4453576-4453595 | None:intergenic | 40.0% | |
| ! | CTAAGCACTTGTCAGTTTTC+TGG | - | chr1_3:4453616-4453635 | None:intergenic | 40.0% |
| CTTACTCCTGAGCTAAAACA+AGG | + | chr1_3:4453789-4453808 | Msa0098480:intron | 40.0% | |
| !!! | GATTGACCTTGTTTTAGCTC+AGG | - | chr1_3:4453798-4453817 | None:intergenic | 40.0% |
| AAGCATATACACCAACACGT+TGG | + | chr1_3:4453851-4453870 | Msa0098480:intron | 40.0% | |
| ACGCCGTGATACAACAATAT+AGG | + | chr1_3:4453892-4453911 | Msa0098480:intron | 40.0% | |
| TAAAAGGAGAGGGTTGTGTT+AGG | - | chr1_3:4453972-4453991 | None:intergenic | 40.0% | |
| ATATTAAATCCTGCCAAGGC+CGG | - | chr1_3:4454008-4454027 | None:intergenic | 40.0% | |
| GCCTTGGCAGGATTTAATAT+AGG | + | chr1_3:4454008-4454027 | Msa0098480:intron | 40.0% | |
| GCCTATATTAAATCCTGCCA+AGG | - | chr1_3:4454012-4454031 | None:intergenic | 40.0% | |
| AGAAAAGCTGTTGTATGCTC+AGG | + | chr1_3:4454175-4454194 | Msa0098480:intron | 40.0% | |
| GAGAGGAGAAAACCAGAATA+AGG | - | chr1_3:4454306-4454325 | None:intergenic | 40.0% | |
| TGTATAGGATGAAGATGGAG+AGG | - | chr1_3:4454323-4454342 | None:intergenic | 40.0% | |
| ! | CACTTATTAGTCAGAGCATC+GGG | - | chr1_3:4454406-4454425 | None:intergenic | 40.0% |
| GCACTTATTAGTCAGAGCAT+CGG | - | chr1_3:4454407-4454426 | None:intergenic | 40.0% | |
| TTCTCAAAACCAACAATGGC+TGG | + | chr1_3:4454774-4454793 | Msa0098480:intron | 40.0% | |
| GTTCGACTTATGCTCTTCAT+TGG | + | chr1_3:4455211-4455230 | Msa0098480:intron | 40.0% | |
| TTTACACAGTTGAACCCAAC+TGG | - | chr1_3:4455261-4455280 | None:intergenic | 40.0% | |
| ACTGTGTAAACAATCTTGGC+AGG | + | chr1_3:4455271-4455290 | Msa0098480:intron | 40.0% | |
| TAAACAATCTTGGCAGGTCT+TGG | + | chr1_3:4455277-4455296 | Msa0098480:intron | 40.0% | |
| !! | TTCCTGCTTTAAAGCCAGAA+TGG | + | chr1_3:4455323-4455342 | Msa0098480:intron | 40.0% |
| CGTCATACAATTGTTGGTGT+TGG | + | chr1_3:4455357-4455376 | Msa0098480:intron | 40.0% | |
| ! | CACGGCAATGAATGTTACTT+CGG | - | chr1_3:4455392-4455411 | None:intergenic | 40.0% |
| ACATTCATTGCCGTGTTTCA+TGG | + | chr1_3:4455397-4455416 | Msa0098480:intron | 40.0% | |
| TTGAAAAATAGTAAGCGCGC+TGG | - | chr1_3:4455678-4455697 | None:intergenic | 40.0% | |
| TCATTATCAACTCCCTTGAG+CGG | - | chr1_3:4455780-4455799 | None:intergenic | 40.0% | |
| AGCTTCTTTACTGGAAGAGT+TGG | - | chr1_3:4455946-4455965 | None:intergenic | 40.0% | |
| CTCTGTAATTGACATGTCTG+AGG | + | chr1_3:4456040-4456059 | Msa0098480:CDS | 40.0% | |
| GATATGCTCGAATAAAGAGC+TGG | - | chr1_3:4456150-4456169 | None:intergenic | 40.0% | |
| AAGAATAGGCAACCTCAGAT+GGG | - | chr1_3:4456172-4456191 | None:intergenic | 40.0% | |
| AAAGAATAGGCAACCTCAGA+TGG | - | chr1_3:4456173-4456192 | None:intergenic | 40.0% | |
| AAGATCGCAACCAAGATTGA+AGG | + | chr1_3:4456315-4456334 | Msa0098480:intron | 40.0% | |
| AGATCGCAACCAAGATTGAA+GGG | + | chr1_3:4456316-4456335 | Msa0098480:intron | 40.0% | |
| TTCGTAGGATCCTTTGATCT+TGG | + | chr1_3:4456520-4456539 | Msa0098480:intron | 40.0% | |
| ! | ACCATGTCTTTTGTTGAGCA+GGG | - | chr1_3:4456613-4456632 | None:intergenic | 40.0% |
| !! | CAGTTGATTTGCAGGTATGT+TGG | - | chr1_3:4456764-4456783 | None:intergenic | 40.0% |
| CAACATACCTGCAAATCAAC+TGG | + | chr1_3:4456762-4456781 | Msa0098480:CDS | 40.0% | |
| !! | CATCAAACCAGTTGATTTGC+AGG | - | chr1_3:4456772-4456791 | None:intergenic | 40.0% |
| !! | AATCAACTGGTTTGATGCTG+TGG | + | chr1_3:4456775-4456794 | Msa0098480:CDS | 40.0% |
| !! | ATCAACTGGTTTGATGCTGT+GGG | + | chr1_3:4456776-4456795 | Msa0098480:CDS | 40.0% |
| ! | ATTGGGATTTTCTGCAAGGA+CGG | - | chr1_3:4456822-4456841 | None:intergenic | 40.0% |
| ! | TGTTTCCGGAAAAAGGGTAT+TGG | + | chr1_3:4456844-4456863 | Msa0098480:three_prime_UTR | 40.0% |
| !! | GGAAAAAGGGTATTGGAGTT+AGG | + | chr1_3:4456851-4456870 | Msa0098480:three_prime_UTR | 40.0% |
| ATCTGTAGCAACTACTCGAT+CGG | - | chr1_3:4456921-4456940 | None:intergenic | 40.0% | |
| AGAGGGTTCAATGTCATCAT+CGG | + | chr1_3:4457079-4457098 | Msa0098480:three_prime_UTR | 40.0% | |
| CTTTCAGCTGCATCACAATT+TGG | + | chr1_3:4457250-4457269 | Msa0098480:three_prime_UTR | 40.0% | |
| ATAACACTTCGAGACGTTTC+AGG | - | chr1_3:4457313-4457332 | None:intergenic | 40.0% | |
| AATGCTTGATCTCACGGCAA+TGG | + | chr1_3:4449944-4449963 | Msa0098480:exon | 45.0% | |
| TGAGACCCCAGAATTTGGTT+TGG | - | chr1_3:4450021-4450040 | None:intergenic | 45.0% | |
| GTTGCTCTACAATCACAGGT+AGG | + | chr1_3:4450582-4450601 | Msa0098480:intron | 45.0% | |
| CAAGATGTTTAGTCCAGAGC+TGG | + | chr1_3:4450698-4450717 | Msa0098480:intron | 45.0% | |
| ! | AATATGAGGCCGGCTTAACA+CGG | + | chr1_3:4451346-4451365 | Msa0098480:intron | 45.0% |
| ! | TTTTAGGCTCCGTGTTAAGC+CGG | - | chr1_3:4451358-4451377 | None:intergenic | 45.0% |
| ! | CTAGCATCTAGGACTAAACC+AGG | - | chr1_3:4451431-4451450 | None:intergenic | 45.0% |
| CTGGTTTAGTCCTAGATGCT+AGG | + | chr1_3:4451429-4451448 | Msa0098480:intron | 45.0% | |
| ! | TTTACTGAACAGGTTGGGTG+TGG | + | chr1_3:4452328-4452347 | Msa0098480:intron | 45.0% |
| CTCACCACGAGCTATTGAAT+TGG | + | chr1_3:4452417-4452436 | Msa0098480:CDS | 45.0% | |
| !! | GATCTAAGTGTCGGTAGCAT+TGG | + | chr1_3:4452583-4452602 | Msa0098480:intron | 45.0% |
| TCCCTTCAAAATGTGCTTCC+TGG | + | chr1_3:4452864-4452883 | Msa0098480:intron | 45.0% | |
| !! | CACCAGGAAGCACATTTTGA+AGG | - | chr1_3:4452869-4452888 | None:intergenic | 45.0% |
| CTGTGACAAAAGATCACACC+AGG | - | chr1_3:4452885-4452904 | None:intergenic | 45.0% | |
| ! | AGCGACAAAAGCGTGAACAT+GGG | - | chr1_3:4453108-4453127 | None:intergenic | 45.0% |
| TATGTTATCTGCAGTGTCCC+CGG | + | chr1_3:4453366-4453385 | Msa0098480:CDS | 45.0% | |
| TTTGGACATTGCCAACGTGT+TGG | - | chr1_3:4453865-4453884 | None:intergenic | 45.0% | |
| TATCACGGCGTCTTGAACTT+TGG | - | chr1_3:4453883-4453902 | None:intergenic | 45.0% | |
| !! | AAGTTTTACGTTGGCTGTCG+AGG | + | chr1_3:4453946-4453965 | Msa0098480:intron | 45.0% |
| GCATAAAACTAGGCTCAGTC+TGG | - | chr1_3:4454230-4454249 | None:intergenic | 45.0% | |
| GAGAACAAGAAACAGTCGCT+AGG | - | chr1_3:4454268-4454287 | None:intergenic | 45.0% | |
| TAGACTTAAGTATGCGGCAG+TGG | + | chr1_3:4454454-4454473 | Msa0098480:intron | 45.0% | |
| ! | TGGGCCTGTTTCTTCATTTG+AGG | + | chr1_3:4454688-4454707 | Msa0098480:intron | 45.0% |
| ! | GGGCCTGTTTCTTCATTTGA+GGG | + | chr1_3:4454689-4454708 | Msa0098480:intron | 45.0% |
| ! | GGCCTGTTTCTTCATTTGAG+GGG | + | chr1_3:4454690-4454709 | Msa0098480:intron | 45.0% |
| AGCCCCTCAAATGAAGAAAC+AGG | - | chr1_3:4454695-4454714 | None:intergenic | 45.0% | |
| TTGAGCGGATCTTGAAGAAG+AGG | - | chr1_3:4454724-4454743 | None:intergenic | 45.0% | |
| CGACTTATGCTCTTCATTGG+AGG | + | chr1_3:4455214-4455233 | Msa0098480:intron | 45.0% | |
| !! | CTCCATTCTGGCTTTAAAGC+AGG | - | chr1_3:4455328-4455347 | None:intergenic | 45.0% |
| ACGTGTTTGACACTCCATTC+TGG | - | chr1_3:4455340-4455359 | None:intergenic | 45.0% | |
| ATAGGAGAGATTCTCTGGCA+AGG | + | chr1_3:4455524-4455543 | Msa0098480:intron | 45.0% | |
| GCGCTGGATAGGAAACAAAA+AGG | - | chr1_3:4455662-4455681 | None:intergenic | 45.0% | |
| AAATAGTAAGCGCGCTGGAT+AGG | - | chr1_3:4455673-4455692 | None:intergenic | 45.0% | |
| AAGAAGTTGAGAACCGCTCA+AGG | + | chr1_3:4455764-4455783 | Msa0098480:CDS | 45.0% | |
| AGAAGTTGAGAACCGCTCAA+GGG | + | chr1_3:4455765-4455784 | Msa0098480:CDS | 45.0% | |
| !! | TCCTTCTGTTTGCTGGTTTC+AGG | + | chr1_3:4455883-4455902 | Msa0098480:intron | 45.0% |
| CTCTTCCAGTAAAGAAGCTG+AGG | + | chr1_3:4455947-4455966 | Msa0098480:CDS | 45.0% | |
| ATTCGCCTCAGCTTCTTTAC+TGG | - | chr1_3:4455955-4455974 | None:intergenic | 45.0% | |
| ATTGACATGTCTGAGGGAGT+CGG | + | chr1_3:4456047-4456066 | Msa0098480:CDS | 45.0% | |
| AAGCCTTACCTCATACTCGT+CGG | - | chr1_3:4456099-4456118 | None:intergenic | 45.0% | |
| ATTCGAGCATATCCCATCTG+AGG | + | chr1_3:4456157-4456176 | Msa0098480:intron | 45.0% | |
| TGATGGGATCCCTTCAATCT+TGG | - | chr1_3:4456328-4456347 | None:intergenic | 45.0% | |
| ACCCTGCTCAACAAAAGACA+TGG | + | chr1_3:4456609-4456628 | Msa0098480:intron | 45.0% | |
| ! | GACCATGTCTTTTGTTGAGC+AGG | - | chr1_3:4456614-4456633 | None:intergenic | 45.0% |
| AAGGACGGAAGCCATTAATC+GGG | - | chr1_3:4456807-4456826 | None:intergenic | 45.0% | |
| CAAGGACGGAAGCCATTAAT+CGG | - | chr1_3:4456808-4456827 | None:intergenic | 45.0% | |
| GATCGAGTAGTTGCTACAGA+TGG | + | chr1_3:4456920-4456939 | Msa0098480:three_prime_UTR | 45.0% | |
| TTAGTAGACAAGTGGCCTAC+CGG | + | chr1_3:4457280-4457299 | Msa0098480:three_prime_UTR | 45.0% | |
| AGACGTTTCAGGCGAATTTC+CGG | - | chr1_3:4457302-4457321 | None:intergenic | 45.0% | |
| !!! | TTGATTTAAAATTTAAATTA+GGG | - | chr1_3:4455037-4455056 | None:intergenic | 5.0% |
| !!! | TTTGATTTAAAATTTAAATT+AGG | - | chr1_3:4455038-4455057 | None:intergenic | 5.0% |
| !! | ATAAAAATAATAATAGTAAA+TGG | + | chr1_3:4455143-4455162 | Msa0098480:intron | 5.0% |
| !!! | TTTGTATATTTAATTTATAT+AGG | + | chr1_3:4455506-4455525 | Msa0098480:intron | 5.0% |
| ATCTCACGGCAATGGCATCA+GGG | + | chr1_3:4449952-4449971 | Msa0098480:CDS | 50.0% | |
| AAGGGTGAGACCCCAGAATT+TGG | - | chr1_3:4450026-4450045 | None:intergenic | 50.0% | |
| !!! | ATTCTGGGGTCTCACCCTTT+TGG | + | chr1_3:4450027-4450046 | Msa0098480:CDS | 50.0% |
| GGGTAGGTACCTCTCCAAAA+GGG | - | chr1_3:4450044-4450063 | None:intergenic | 50.0% | |
| AGGGTAGGTACCTCTCCAAA+AGG | - | chr1_3:4450045-4450064 | None:intergenic | 50.0% | |
| ! | TCTGAAGCAAGAGCGTGAGA+AGG | - | chr1_3:4450080-4450099 | None:intergenic | 50.0% |
| CACAATAGAAGGGAAAGGGG+TGG | + | chr1_3:4450456-4450475 | Msa0098480:intron | 50.0% | |
| AATAGAAGGGAAAGGGGTGG+AGG | + | chr1_3:4450459-4450478 | Msa0098480:intron | 50.0% | |
| GTTCATGCAGAGTTCGCCAA+CGG | - | chr1_3:4450610-4450629 | None:intergenic | 50.0% | |
| TAAACCAGGGCCAGTCTAAG+GGG | - | chr1_3:4451417-4451436 | None:intergenic | 50.0% | |
| CTAAACCAGGGCCAGTCTAA+GGG | - | chr1_3:4451418-4451437 | None:intergenic | 50.0% | |
| ACTAAACCAGGGCCAGTCTA+AGG | - | chr1_3:4451419-4451438 | None:intergenic | 50.0% | |
| CCTAACACACCCTAGCATCT+AGG | - | chr1_3:4451442-4451461 | None:intergenic | 50.0% | |
| CCTAGATGCTAGGGTGTGTT+AGG | + | chr1_3:4451439-4451458 | Msa0098480:intron | 50.0% | |
| AGCTATGAAAGGCTTCCCCT+AGG | - | chr1_3:4452646-4452665 | None:intergenic | 50.0% | |
| ! | CAGCGACAAAAGCGTGAACA+TGG | - | chr1_3:4453109-4453128 | None:intergenic | 50.0% |
| CGCAGCAGCACATATCCATT+TGG | - | chr1_3:4453535-4453554 | None:intergenic | 50.0% | |
| ! | CACAACCCTCTCCTTTTACC+CGG | + | chr1_3:4453974-4453993 | Msa0098480:intron | 50.0% |
| ! | ACAACCCTCTCCTTTTACCC+GGG | + | chr1_3:4453975-4453994 | Msa0098480:intron | 50.0% |
| ACAGTCGCTAGGAAGAGATG+AGG | - | chr1_3:4454257-4454276 | None:intergenic | 50.0% | |
| ACTTAAGTATGCGGCAGTGG+TGG | + | chr1_3:4454457-4454476 | Msa0098480:intron | 50.0% | |
| CAAGATCCGCTCAACTGTGT+TGG | + | chr1_3:4454730-4454749 | Msa0098480:intron | 50.0% | |
| CCACGAAAACCAGCCATTGT+TGG | - | chr1_3:4454786-4454805 | None:intergenic | 50.0% | |
| !!! | CCAACAATGGCTGGTTTTCG+TGG | + | chr1_3:4454783-4454802 | Msa0098480:intron | 50.0% |
| CATTGGAGGAAAGCAGAGTC+CGG | + | chr1_3:4455228-4455247 | Msa0098480:intron | 50.0% | |
| ATCTTGGCAGGTCTTGGACA+AGG | + | chr1_3:4455283-4455302 | Msa0098480:intron | 50.0% | |
| GCCTGAAACCAGCAAACAGA+AGG | - | chr1_3:4455887-4455906 | None:intergenic | 50.0% | |
| !! | TGTTTGCTGGTTTCAGGCGT+TGG | + | chr1_3:4455889-4455908 | Msa0098480:intron | 50.0% |
| !! | GTTTGCTGGTTTCAGGCGTT+GGG | + | chr1_3:4455890-4455909 | Msa0098480:intron | 50.0% |
| GCTGAGGCGAATCATCTTGA+TGG | + | chr1_3:4455963-4455982 | Msa0098480:CDS | 50.0% | |
| TTGACATGTCTGAGGGAGTC+GGG | + | chr1_3:4456048-4456067 | Msa0098480:CDS | 50.0% | |
| CTTACCTCATACTCGTCGGA+AGG | - | chr1_3:4456095-4456114 | None:intergenic | 50.0% | |
| CTTCCGACGAGTATGAGGTA+AGG | + | chr1_3:4456093-4456112 | Msa0098480:intron | 50.0% | |
| TGGAGATCAACCTTAGAGGC+TGG | + | chr1_3:4456706-4456725 | Msa0098480:CDS | 50.0% | |
| TGTGGGAATCGCCCGATTAA+TGG | + | chr1_3:4456793-4456812 | Msa0098480:CDS | 50.0% | |
| !! | AGGGTATTGGAGTTAGGGTG+TGG | + | chr1_3:4456857-4456876 | Msa0098480:three_prime_UTR | 50.0% |
| CATCGACACGGCGAAAGATA+TGG | - | chr1_3:4457219-4457238 | None:intergenic | 50.0% | |
| !! | GCAACGTTGGTTCATCGACA+CGG | - | chr1_3:4457231-4457250 | None:intergenic | 50.0% |
| GATGCAGCTGAAAGCAACGT+TGG | - | chr1_3:4457244-4457263 | None:intergenic | 50.0% | |
| GTTTCAGGCGAATTTCCGGT+AGG | - | chr1_3:4457298-4457317 | None:intergenic | 50.0% | |
| GATCTCACGGCAATGGCATC+AGG | + | chr1_3:4449951-4449970 | Msa0098480:CDS | 55.0% | |
| TCTCACGGCAATGGCATCAG+GGG | + | chr1_3:4449953-4449972 | Msa0098480:CDS | 55.0% | |
| TGGAGGAGGAGTTGAGCTAG+CGG | + | chr1_3:4450476-4450495 | Msa0098480:intron | 55.0% | |
| AGGAGTTGAGCTAGCGGTTC+AGG | + | chr1_3:4450482-4450501 | Msa0098480:intron | 55.0% | |
| GGAGTTGAGCTAGCGGTTCA+GGG | + | chr1_3:4450483-4450502 | Msa0098480:intron | 55.0% | |
| GAGTTGAGCTAGCGGTTCAG+GGG | + | chr1_3:4450484-4450503 | Msa0098480:intron | 55.0% | |
| ! | CAATCACAGGTAGGCACCGT+TGG | + | chr1_3:4450591-4450610 | Msa0098480:intron | 55.0% |
| GGCCTAAAGCCCTTGCTTCA+GGG | + | chr1_3:4451386-4451405 | Msa0098480:intron | 55.0% | |
| GCCTAAAGCCCTTGCTTCAG+GGG | + | chr1_3:4451387-4451406 | Msa0098480:intron | 55.0% | |
| AAACCAGGGCCAGTCTAAGG+GGG | - | chr1_3:4451416-4451435 | None:intergenic | 55.0% | |
| AGGGTGTGTTAGGTCGCGTT+AGG | + | chr1_3:4451449-4451468 | Msa0098480:intron | 55.0% | |
| CTGCTGCGAGACTATGCTAC+TGG | + | chr1_3:4453547-4453566 | Msa0098480:CDS | 55.0% | |
| TGCTACTGGAGACCTTGCTC+AGG | + | chr1_3:4453561-4453580 | Msa0098480:CDS | 55.0% | |
| CAAGCCCGGGTAAAAGGAGA+GGG | - | chr1_3:4453982-4454001 | None:intergenic | 55.0% | |
| ! | CTCTCCTTTTACCCGGGCTT+GGG | + | chr1_3:4453981-4454000 | Msa0098480:intron | 55.0% |
| GCTCAGGAGTAATTGCCCCT+CGG | + | chr1_3:4454191-4454210 | Msa0098480:intron | 55.0% | |
| CTCAGGAGTAATTGCCCCTC+GGG | + | chr1_3:4454192-4454211 | Msa0098480:intron | 55.0% | |
| TCAGGAGTAATTGCCCCTCG+GGG | + | chr1_3:4454193-4454212 | Msa0098480:intron | 55.0% | |
| !!! | CAATGGCTGGTTTTCGTGGC+TGG | + | chr1_3:4454787-4454806 | Msa0098480:intron | 55.0% |
| !! | CTGGTTTTCGTGGCTGGTTC+AGG | + | chr1_3:4454793-4454812 | Msa0098480:intron | 55.0% |
| !!! | GGACCAGATGCTGGTTTTCG+TGG | + | chr1_3:4454814-4454833 | Msa0098480:intron | 55.0% |
| GAGCCACGAAAACCAGCATC+TGG | - | chr1_3:4454820-4454839 | None:intergenic | 55.0% | |
| TGACATGTCTGAGGGAGTCG+GGG | + | chr1_3:4456049-4456068 | Msa0098480:CDS | 55.0% | |
| CTTGCCTTCCGACGAGTATG+AGG | + | chr1_3:4456088-4456107 | Msa0098480:CDS | 55.0% | |
| AGAGCTGGAGAGCAGCCAAA+TGG | - | chr1_3:4456135-4456154 | None:intergenic | 55.0% | |
| TTGGAGTTAGGGTGTGGCAG+TGG | + | chr1_3:4456863-4456882 | Msa0098480:three_prime_UTR | 55.0% | |
| !! | GGGGTCTCACCCTTTTGGAG+AGG | + | chr1_3:4450032-4450051 | Msa0098480:CDS | 60.0% |
| AGAAGGGAAAGGGGTGGAGG+AGG | + | chr1_3:4450462-4450481 | Msa0098480:intron | 60.0% | |
| GGGCCTAAAGCCCTTGCTTC+AGG | + | chr1_3:4451385-4451404 | Msa0098480:intron | 60.0% | |
| GCCCCTGAAGCAAGGGCTTT+AGG | - | chr1_3:4451391-4451410 | None:intergenic | 60.0% | |
| ! | GAACAGGTTGGGTGTGGAGC+TGG | + | chr1_3:4452334-4452353 | Msa0098480:intron | 60.0% |
| CCAAGCCCGGGTAAAAGGAG+AGG | - | chr1_3:4453983-4454002 | None:intergenic | 60.0% | |
| ! | CCTCTCCTTTTACCCGGGCT+TGG | + | chr1_3:4453980-4453999 | Msa0098480:intron | 60.0% |
| ! | CTTTTACCCGGGCTTGGGAC+CGG | + | chr1_3:4453986-4454005 | Msa0098480:intron | 60.0% |
| AGTAATTGCCCCTCGGGGAC+TGG | + | chr1_3:4454198-4454217 | Msa0098480:intron | 60.0% | |
| ! | GCTGGTTCAGGACCAGATGC+TGG | + | chr1_3:4454805-4454824 | Msa0098480:intron | 60.0% |
| GGAGTCGGGGCTGACATGTT+TGG | + | chr1_3:4456062-4456081 | Msa0098480:CDS | 60.0% | |
| GAGTTAGGGTGTGGCAGTGG+TGG | + | chr1_3:4456866-4456885 | Msa0098480:three_prime_UTR | 60.0% | |
| CGGTCCCAAGCCCGGGTAAA+AGG | - | chr1_3:4453988-4454007 | None:intergenic | 65.0% | |
| AATTGCCCCTCGGGGACTGG+CGG | + | chr1_3:4454201-4454220 | Msa0098480:intron | 65.0% | |
| AGTCCGGCTGCACGCCAGTT+GGG | + | chr1_3:4455244-4455263 | Msa0098480:intron | 65.0% | |
| GAACCCAACTGGCGTGCAGC+CGG | - | chr1_3:4455250-4455269 | None:intergenic | 65.0% | |
| GGGGGCTGCCCCTGAAGCAA+GGG | - | chr1_3:4451398-4451417 | None:intergenic | 70.0% | |
| AGGGGGCTGCCCCTGAAGCA+AGG | - | chr1_3:4451399-4451418 | None:intergenic | 70.0% | |
| CAGGGGCAGCCCCCTTAGAC+TGG | + | chr1_3:4451404-4451423 | Msa0098480:intron | 70.0% | |
| ! | CAGCCCCCTTAGACTGGCCC+TGG | + | chr1_3:4451410-4451429 | Msa0098480:intron | 70.0% |
| TGGAGACCGCCAGTCCCCGA+GGG | - | chr1_3:4454210-4454229 | None:intergenic | 70.0% | |
| GAGTCCGGCTGCACGCCAGT+TGG | + | chr1_3:4455243-4455262 | Msa0098480:intron | 70.0% | |
| CCAAGGCCGGTCCCAAGCCC+GGG | - | chr1_3:4453995-4454014 | None:intergenic | 75.0% | |
| GCCAAGGCCGGTCCCAAGCC+CGG | - | chr1_3:4453996-4454015 | None:intergenic | 75.0% | |
| GGCTTGGGACCGGCCTTGGC+AGG | + | chr1_3:4453996-4454015 | Msa0098480:intron | 75.0% | |
| GGAGACCGCCAGTCCCCGAG+GGG | - | chr1_3:4454209-4454228 | None:intergenic | 75.0% | |
| CTGGAGACCGCCAGTCCCCG+AGG | - | chr1_3:4454211-4454230 | None:intergenic | 75.0% | |
| ! | CCCGGGCTTGGGACCGGCCT+TGG | + | chr1_3:4453992-4454011 | Msa0098480:intron | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_3 | gene | 4449859 | 4457690 | 4449859 | ID=Msa0098480;Name=Msa0098480 |
| chr1_3 | mRNA | 4449859 | 4457690 | 4449859 | ID=Msa0098480-mRNA-1;Parent=Msa0098480;Name=Msa0098480-mRNA-1;_AED=0.13;_eAED=0.13;_QI=86|1|1|1|1|1|12|878|362 |
| chr1_3 | exon | 4449859 | 4450053 | 4449859 | ID=Msa0098480-mRNA-1:exon:1492;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4450148 | 4450209 | 4450148 | ID=Msa0098480-mRNA-1:exon:1493;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4451687 | 4451737 | 4451687 | ID=Msa0098480-mRNA-1:exon:1494;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4451836 | 4451862 | 4451836 | ID=Msa0098480-mRNA-1:exon:1495;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4452340 | 4452444 | 4452340 | ID=Msa0098480-mRNA-1:exon:1496;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4453083 | 4453190 | 4453083 | ID=Msa0098480-mRNA-1:exon:1497;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4453361 | 4453432 | 4453361 | ID=Msa0098480-mRNA-1:exon:1498;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4453532 | 4453582 | 4453532 | ID=Msa0098480-mRNA-1:exon:1499;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4455528 | 4455590 | 4455528 | ID=Msa0098480-mRNA-1:exon:1500;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4455679 | 4455803 | 4455679 | ID=Msa0098480-mRNA-1:exon:1501;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4455905 | 4456109 | 4455905 | ID=Msa0098480-mRNA-1:exon:1502;Parent=Msa0098480-mRNA-1 |
| chr1_3 | exon | 4456702 | 4457690 | 4456702 | ID=Msa0098480-mRNA-1:exon:1503;Parent=Msa0098480-mRNA-1 |
| chr1_3 | five_prime_UTR | 4449859 | 4449944 | 4449859 | ID=Msa0098480-mRNA-1:five_prime_utr;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4449945 | 4450053 | 4449945 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4450148 | 4450209 | 4450148 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4451687 | 4451737 | 4451687 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4451836 | 4451862 | 4451836 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4452340 | 4452444 | 4452340 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4453083 | 4453190 | 4453083 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4453361 | 4453432 | 4453361 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4453532 | 4453582 | 4453532 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4455528 | 4455590 | 4455528 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4455679 | 4455803 | 4455679 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4455905 | 4456109 | 4455905 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | CDS | 4456702 | 4456812 | 4456702 | ID=Msa0098480-mRNA-1:cds;Parent=Msa0098480-mRNA-1 |
| chr1_3 | three_prime_UTR | 4456813 | 4457690 | 4456813 | ID=Msa0098480-mRNA-1:three_prime_utr;Parent=Msa0098480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
