Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011680 | XP_003621884.1 | 94.463 | 307 | 15 | 1 | 1 | 305 | 1 | 307 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011680 | G7KXT7 | 94.463 | 307 | 15 | 1 | 1 | 305 | 1 | 307 | 0.0 | 571 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011960 | Msa1011680 | 0.824105 | 9.662837e-54 | -8.615850e-47 |
| Msa0029270 | Msa1011680 | 0.805962 | 1.036228e-49 | -8.615850e-47 |
| Msa0032090 | Msa1011680 | 0.820901 | 5.368889e-53 | -8.615850e-47 |
| Msa0032580 | Msa1011680 | 0.897174 | 1.815952e-76 | -8.615850e-47 |
| Msa0033110 | Msa1011680 | 0.800438 | 1.441149e-48 | -8.615850e-47 |
| Msa0033260 | Msa1011680 | 0.805922 | 1.056530e-49 | -8.615850e-47 |
| Msa0040690 | Msa1011680 | 0.841855 | 3.689344e-58 | -8.615850e-47 |
| Msa0043660 | Msa1011680 | 0.817188 | 3.753825e-52 | -8.615850e-47 |
| Msa0053600 | Msa1011680 | 0.806754 | 7.055604e-50 | -8.615850e-47 |
| Msa0054440 | Msa1011680 | 0.805828 | 1.105700e-49 | -8.615850e-47 |
| Msa0058300 | Msa1011680 | 0.807061 | 6.074533e-50 | -8.615850e-47 |
| Msa0074320 | Msa1011680 | 0.811131 | 8.160548e-51 | -8.615850e-47 |
| Msa0075960 | Msa1011680 | 0.813406 | 2.600911e-51 | -8.615850e-47 |
| Msa0079820 | Msa1011680 | 0.832158 | 1.109110e-55 | -8.615850e-47 |
| Msa0080200 | Msa1011680 | 0.850633 | 1.496821e-60 | -8.615850e-47 |
| Msa0091410 | Msa1011680 | 0.803885 | 2.814944e-49 | -8.615850e-47 |
| Msa0094470 | Msa1011680 | 0.801817 | 7.528915e-49 | -8.615850e-47 |
| Msa0098480 | Msa1011680 | 0.817599 | 3.032975e-52 | -8.615850e-47 |
| Msa0099220 | Msa1011680 | 0.818916 | 1.526538e-52 | -8.615850e-47 |
| Msa0105620 | Msa1011680 | 0.809204 | 2.124343e-50 | -8.615850e-47 |
| Msa0608320 | Msa1011680 | 0.803132 | 4.034181e-49 | -8.615850e-47 |
| Msa0615440 | Msa1011680 | 0.816191 | 6.278942e-52 | -8.615850e-47 |
| Msa0616240 | Msa1011680 | 0.833196 | 6.128956e-56 | -8.615850e-47 |
| Msa0623720 | Msa1011680 | 0.802182 | 6.334196e-49 | -8.615850e-47 |
| Msa0643560 | Msa1011680 | 0.815058 | 1.122820e-51 | -8.615850e-47 |
| Msa0675410 | Msa1011680 | 0.800606 | 1.332218e-48 | -8.615850e-47 |
| Msa0677290 | Msa1011680 | 0.800436 | 1.442428e-48 | -8.615850e-47 |
| Msa0688960 | Msa1011680 | 0.817039 | 4.053588e-52 | -8.615850e-47 |
| Msa0698490 | Msa1011680 | 0.819291 | 1.254406e-52 | -8.615850e-47 |
| Msa0698660 | Msa1011680 | 0.824017 | 1.013477e-53 | -8.615850e-47 |
| Msa0699570 | Msa1011680 | 0.831496 | 1.615688e-55 | -8.615850e-47 |
| Msa0711780 | Msa1011680 | 0.801873 | 7.330995e-49 | -8.615850e-47 |
| Msa0719420 | Msa1011680 | 0.821818 | 3.298005e-53 | -8.615850e-47 |
| Msa0772480 | Msa1011680 | 0.803708 | 3.064648e-49 | -8.615850e-47 |
| Msa0789680 | Msa1011680 | 0.824975 | 6.029873e-54 | -8.615850e-47 |
| Msa0798440 | Msa1011680 | 0.807164 | 5.777659e-50 | -8.615850e-47 |
| Msa0802410 | Msa1011680 | 0.817692 | 2.890544e-52 | -8.615850e-47 |
| Msa0808270 | Msa1011680 | 0.804955 | 1.684682e-49 | -8.615850e-47 |
| Msa0830540 | Msa1011680 | 0.812013 | 5.249089e-51 | -8.615850e-47 |
| Msa0127050 | Msa1011680 | 0.811077 | 8.386395e-51 | -8.615850e-47 |
| Msa0127390 | Msa1011680 | 0.816097 | 6.591842e-52 | -8.615850e-47 |
| Msa0137550 | Msa1011680 | 0.809843 | 1.548844e-50 | -8.615850e-47 |
| Msa0145730 | Msa1011680 | 0.815921 | 7.215462e-52 | -8.615850e-47 |
| Msa0150820 | Msa1011680 | 0.801079 | 1.066577e-48 | -8.615850e-47 |
| Msa0159340 | Msa1011680 | 0.825992 | 3.463066e-54 | -8.615850e-47 |
| Msa0160550 | Msa1011680 | 0.807231 | 5.591498e-50 | -8.615850e-47 |
| Msa0165660 | Msa1011680 | 0.826459 | 2.682097e-54 | -8.615850e-47 |
| Msa0172970 | Msa1011680 | 0.898738 | 3.954357e-77 | -8.615850e-47 |
| Msa0187690 | Msa1011680 | 0.808223 | 3.441888e-50 | -8.615850e-47 |
| Msa0189010 | Msa1011680 | 0.803735 | 3.025572e-49 | -8.615850e-47 |
| Msa0189300 | Msa1011680 | 0.804644 | 1.956245e-49 | -8.615850e-47 |
| Msa0220720 | Msa1011680 | 0.827071 | 1.915622e-54 | -8.615850e-47 |
| Msa0231660 | Msa1011680 | 0.819165 | 1.340448e-52 | -8.615850e-47 |
| Msa0369220 | Msa1011680 | 0.826935 | 2.063968e-54 | -8.615850e-47 |
| Msa0383500 | Msa1011680 | 0.800134 | 1.662192e-48 | -8.615850e-47 |
| Msa0385580 | Msa1011680 | 0.820491 | 6.670508e-53 | -8.615850e-47 |
| Msa0402650 | Msa1011680 | 0.812249 | 4.662633e-51 | -8.615850e-47 |
| Msa0449210 | Msa1011680 | 0.816102 | 6.572956e-52 | -8.615850e-47 |
| Msa0999970 | Msa1011680 | 0.818084 | 2.357783e-52 | -8.615850e-47 |
| Msa1009820 | Msa1011680 | 0.801947 | 7.079465e-49 | -8.615850e-47 |
| Msa1011680 | Msa1039140 | 0.802353 | 5.840883e-49 | -8.615850e-47 |
| Msa1011680 | Msa1043690 | 0.800477 | 1.414948e-48 | -8.615850e-47 |
| Msa1011680 | Msa1051200 | 0.817699 | 2.880001e-52 | -8.615850e-47 |
| Msa1011680 | Msa1081150 | 0.801600 | 8.339522e-49 | -8.615850e-47 |
| Msa1011680 | Msa1084470 | 0.818713 | 1.697642e-52 | -8.615850e-47 |
| Msa1011680 | Msa1087710 | 0.837443 | 5.183994e-57 | -8.615850e-47 |
| Msa1011680 | Msa1104140 | 0.836596 | 8.528304e-57 | -8.615850e-47 |
| Msa1011680 | Msa1104210 | 0.812649 | 3.812792e-51 | -8.615850e-47 |
| Msa1011680 | Msa1106700 | 0.811070 | 8.411965e-51 | -8.615850e-47 |
| Msa1011680 | Msa1137700 | 0.814302 | 1.651105e-51 | -8.615850e-47 |
| Msa1011680 | Msa1138870 | 0.803564 | 3.281777e-49 | -8.615850e-47 |
| Msa1011680 | Msa1206670 | 0.821655 | 3.596449e-53 | -8.615850e-47 |
| Msa1011680 | Msa1224810 | 0.803899 | 2.797160e-49 | -8.615850e-47 |
| Msa1011680 | Msa1225700 | 0.804999 | 1.649143e-49 | -8.615850e-47 |
| Msa1011680 | Msa1344340 | 0.803945 | 2.735371e-49 | -8.615850e-47 |
| Msa1011680 | Msa1363330 | 0.805145 | 1.537351e-49 | -8.615850e-47 |
| Msa1011680 | Msa1374120 | 0.804154 | 2.475843e-49 | -8.615850e-47 |
| Msa1011680 | Msa1385100 | 0.831452 | 1.655870e-55 | -8.615850e-47 |
| Msa1011680 | Msa1386600 | 0.805569 | 1.252975e-49 | -8.615850e-47 |
| Msa1011680 | Msa1389800 | 0.810436 | 1.153541e-50 | -8.615850e-47 |
| Msa1011680 | Msa1394290 | 0.822330 | 2.509112e-53 | -8.615850e-47 |
| Msa1011680 | Msa1430120 | 0.834952 | 2.224964e-56 | -8.615850e-47 |
| Msa1011680 | Msa1432700 | 0.801139 | 1.036524e-48 | -8.615850e-47 |
| Msa1011680 | Msa1444310 | 0.805976 | 1.029230e-49 | -8.615850e-47 |
| Msa1011680 | Msa1457920 | 0.827797 | 1.282690e-54 | -8.615850e-47 |
| Msa1011680 | Msa1460740 | 0.840230 | 9.853883e-58 | -8.615850e-47 |
| Msa0262050 | Msa1011680 | 0.818370 | 2.030434e-52 | -8.615850e-47 |
| Msa0262310 | Msa1011680 | 0.827327 | 1.663580e-54 | -8.615850e-47 |
| Msa0265430 | Msa1011680 | 0.803254 | 3.805770e-49 | -8.615850e-47 |
| Msa0299870 | Msa1011680 | 0.836242 | 1.049356e-56 | -8.615850e-47 |
| Msa0337240 | Msa1011680 | 0.826544 | 2.560072e-54 | -8.615850e-47 |
| Msa0337620 | Msa1011680 | 0.822105 | 2.830717e-53 | -8.615850e-47 |
| Msa0337650 | Msa1011680 | 0.813965 | 1.959014e-51 | -8.615850e-47 |
| Msa0340380 | Msa1011680 | 0.815555 | 8.704482e-52 | -8.615850e-47 |
| Msa0508590 | Msa1011680 | 0.804921 | 1.712427e-49 | -8.615850e-47 |
| Msa0508870 | Msa1011680 | 0.827568 | 1.455954e-54 | -8.615850e-47 |
| Msa0510350 | Msa1011680 | 0.806925 | 6.492216e-50 | -8.615850e-47 |
| Msa0526540 | Msa1011680 | 0.803920 | 2.768601e-49 | -8.615850e-47 |
| Msa0541360 | Msa1011680 | 0.815727 | 7.972605e-52 | -8.615850e-47 |
| Msa0576940 | Msa1011680 | 0.812095 | 5.037413e-51 | -8.615850e-47 |
| Msa0944190 | Msa1011680 | 0.810743 | 9.904322e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011680 | MtrunA17_Chr7g0223271 | 94.463 | 307 | 15 | 1 | 1 | 305 | 1 | 307 | 0.0 | 571 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1011680 | AT3G04020.1 | 48.701 | 308 | 149 | 6 | 1 | 304 | 2 | 304 | 1.43e-96 | 287 |
| Msa1011680 | AT3G04020.2 | 46.281 | 242 | 123 | 5 | 67 | 304 | 1 | 239 | 3.42e-64 | 202 |
| Msa1011680 | AT3G04020.3 | 46.025 | 239 | 122 | 5 | 70 | 304 | 1 | 236 | 2.27e-62 | 197 |
| Msa1011680 | AT3G04020.4 | 46.486 | 185 | 95 | 3 | 1 | 183 | 2 | 184 | 5.96e-53 | 172 |
Find 79 sgRNAs with CRISPR-Local
Find 303 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCAGCTCGGGTTGCTTTATC+TGG | 0.129082 | 7_1:+16349571 | Msa1011680:CDS |
| GCAAAAGAATCTGTAATATT+TGG | 0.184487 | 7_1:+16352534 | Msa1011680:three_prime_UTR |
| TCAATCAACTTCGCAGAAAA+TGG | 0.267617 | 7_1:-16351585 | None:intergenic |
| AGAAAATGATTTGCATAATA+TGG | 0.281261 | 7_1:+16348370 | Msa1011680:CDS |
| GCTGTGACCTGTCCATTTCC+AGG | 0.318798 | 7_1:+16349207 | Msa1011680:CDS |
| TTCACCTAATTGATCAGCTT+TGG | 0.322940 | 7_1:-16351482 | None:intergenic |
| TGATAATCTTCAGGAACTAT+TGG | 0.336357 | 7_1:+16350549 | Msa1011680:CDS |
| AGATCTTGCACATTTATTGA+TGG | 0.337055 | 7_1:+16351415 | Msa1011680:CDS |
| ACATCCAAAGCTGATCAATT+AGG | 0.353849 | 7_1:+16351478 | Msa1011680:CDS |
| AGGAGCCATATTAAAATCAT+TGG | 0.384006 | 7_1:+16349236 | Msa1011680:CDS |
| AAGTTTAGTTACACTGTGTC+TGG | 0.387940 | 7_1:+16350490 | Msa1011680:CDS |
| GCTCCTAGTCGGCCTGGAAA+TGG | 0.389738 | 7_1:-16349219 | None:intergenic |
| AGGAGATATTCATACATCTA+AGG | 0.392991 | 7_1:+16348304 | Msa1011680:CDS |
| CCAACGCCATCCTTTGAAAC+AGG | 0.397576 | 7_1:-16352233 | None:intergenic |
| AGGTTAAATACATACTTAGA+AGG | 0.401042 | 7_1:+16348324 | Msa1011680:CDS |
| CAGCTCGGGTTGCTTTATCT+GGG | 0.418686 | 7_1:+16349572 | Msa1011680:CDS |
| GATGTGCTAGCAAAAGTTAC+TGG | 0.434201 | 7_1:+16352209 | Msa1011680:CDS |
| CTAAAACATGCAACCTTGGT+TGG | 0.437153 | 7_1:+16352385 | Msa1011680:exon |
| GATAATCTTCAGGAACTATT+GGG | 0.438617 | 7_1:+16350550 | Msa1011680:CDS |
| TGCACATTTATTGATGGCCA+TGG | 0.441997 | 7_1:+16351421 | Msa1011680:CDS |
| CTGTCAACATCTAGTTCAAA+TGG | 0.447013 | 7_1:+16352319 | Msa1011680:CDS |
| AGAATATATTAACATCAAAC+TGG | 0.453005 | 7_1:+16347179 | Msa1011680:intron |
| CATATTAAAATCATTGGAAA+AGG | 0.456553 | 7_1:+16349242 | Msa1011680:CDS |
| GATGTGGATGTTGAAGATTT+AGG | 0.465087 | 7_1:+16351454 | Msa1011680:CDS |
| AACTTTCTCTGTGAGCGCCT+TGG | 0.466325 | 7_1:-16350431 | None:intergenic |
| ATTTATTATAACAAAAGAAA+AGG | 0.471055 | 7_1:-16352410 | None:intergenic |
| ATCGCGAAGTGATAATCTTC+AGG | 0.479237 | 7_1:+16350540 | Msa1011680:CDS |
| ATCGAATCCCTTGCGATCAA+CGG | 0.485133 | 7_1:-16352189 | None:intergenic |
| TGGAAGAGGAGGTCATCAAA+AGG | 0.490710 | 7_1:+16352339 | Msa1011680:CDS |
| CATGCTGCAGTTACCAGCTC+GGG | 0.495177 | 7_1:+16349558 | Msa1011680:intron |
| TAAACTAAAACATGCAACCT+TGG | 0.497628 | 7_1:+16352381 | Msa1011680:exon |
| TGATGAATTGATTGTCAAGA+TGG | 0.498989 | 7_1:+16352588 | Msa1011680:three_prime_UTR |
| GGTTAAATACATACTTAGAA+GGG | 0.501903 | 7_1:+16348325 | Msa1011680:CDS |
| AGTTACTGGTCCTGTTTCAA+AGG | 0.504240 | 7_1:+16352223 | Msa1011680:CDS |
| GTTAAATACATACTTAGAAG+GGG | 0.510235 | 7_1:+16348326 | Msa1011680:CDS |
| ATAATTCTGAAGCTACGTAC+TGG | 0.516224 | 7_1:-16352634 | None:intergenic |
| TCATTAAGTTACCTTTGCAT+TGG | 0.518961 | 7_1:-16351673 | None:intergenic |
| ACTGGTCCTGTTTCAAAGGA+TGG | 0.521951 | 7_1:+16352227 | Msa1011680:CDS |
| AATACCAATGGACAGAGCTC+AGG | 0.523287 | 7_1:+16352258 | Msa1011680:CDS |
| GGAAGAGGAGGTCATCAAAA+GGG | 0.526294 | 7_1:+16352340 | Msa1011680:CDS |
| AATATGGCTCCTAGTCGGCC+TGG | 0.526725 | 7_1:-16349225 | None:intergenic |
| TTTCTGCGAAGTTGATTGAT+GGG | 0.526838 | 7_1:+16351589 | Msa1011680:CDS |
| TCTTCCTCTCAATGAAGATA+AGG | 0.528212 | 7_1:+16349600 | Msa1011680:CDS |
| CCAGATAAAGCAACCCGAGC+TGG | 0.528822 | 7_1:-16349571 | None:intergenic |
| TGTAACATCCGTTGATCGCA+AGG | 0.531235 | 7_1:+16352181 | Msa1011680:CDS |
| ACTATCAAAGCAGATGCTAA+AGG | 0.532612 | 7_1:+16347217 | Msa1011680:CDS |
| CTCTACGCCTAGCTTCACTT+TGG | 0.537449 | 7_1:-16351617 | None:intergenic |
| ACATGCTGCAGTTACCAGCT+CGG | 0.544322 | 7_1:+16349557 | Msa1011680:intron |
| TGAACCTGAGCTCTGTCCAT+TGG | 0.545424 | 7_1:-16352262 | None:intergenic |
| AATACCTTATCTTCATTGAG+AGG | 0.547218 | 7_1:-16349604 | None:intergenic |
| CAGGTTCATGTTCGAGCAAG+AGG | 0.547326 | 7_1:+16352277 | Msa1011680:CDS |
| TAGTCGGCCTGGAAATGGAC+AGG | 0.547711 | 7_1:-16349214 | None:intergenic |
| TCTGGAGTACTAAGTTCTAG+TGG | 0.548859 | 7_1:+16350508 | Msa1011680:CDS |
| ACATCTAGTTCAAATGGAAG+AGG | 0.555304 | 7_1:+16352325 | Msa1011680:CDS |
| CCTGTTTCAAAGGATGGCGT+TGG | 0.557484 | 7_1:+16352233 | Msa1011680:CDS |
| AAAAGGGTTTCAGCCTCTAG+TGG | 0.558190 | 7_1:+16352356 | Msa1011680:CDS |
| TAATTCTGAAGCTACGTACT+GGG | 0.574429 | 7_1:-16352633 | None:intergenic |
| CATTTGCTTGCAGACACAAA+CGG | 0.574643 | 7_1:+16346988 | Msa1011680:intron |
| GGATTAACCAAAGTGAAGCT+AGG | 0.579660 | 7_1:+16351610 | Msa1011680:CDS |
| TTGACAGAATGTTTCAACAT+CGG | 0.583310 | 7_1:-16352303 | None:intergenic |
| CTGGAGTACTAAGTTCTAGT+GGG | 0.585327 | 7_1:+16350509 | Msa1011680:CDS |
| TCATGAAGTCATACGATCTG+AGG | 0.586427 | 7_1:+16350453 | Msa1011680:CDS |
| AGCTCGGGTTGCTTTATCTG+GGG | 0.593276 | 7_1:+16349573 | Msa1011680:CDS |
| TGTCCATTTCCAGGCCGACT+AGG | 0.593366 | 7_1:+16349216 | Msa1011680:CDS |
| ATGGCGTTGGTCAATACCAA+TGG | 0.594282 | 7_1:+16352246 | Msa1011680:CDS |
| AACATTCGCTGAGAAATGCA+AGG | 0.601558 | 7_1:+16347075 | Msa1011680:CDS |
| GTAACATCCGTTGATCGCAA+GGG | 0.604514 | 7_1:+16352182 | Msa1011680:CDS |
| TCTAGTTCAAATGGAAGAGG+AGG | 0.611304 | 7_1:+16352328 | Msa1011680:CDS |
| TTACATGAACACCAATGCAA+AGG | 0.620843 | 7_1:+16351662 | Msa1011680:CDS |
| TCAAAGCAGATGCTAAAGGA+AGG | 0.627362 | 7_1:+16347221 | Msa1011680:CDS |
| ATATTAACATCAAACTGGCA+AGG | 0.633061 | 7_1:+16347184 | Msa1011680:CDS |
| CCACATCAAAAGTACCTCCA+TGG | 0.641615 | 7_1:-16351438 | None:intergenic |
| ACATTTATTGATGGCCATGG+AGG | 0.647168 | 7_1:+16351424 | Msa1011680:CDS |
| AACACAATCATTGATGAGCG+TGG | 0.656484 | 7_1:+16349177 | Msa1011680:CDS |
| AAACAAAACATAAAAGCACA+AGG | 0.660653 | 7_1:-16351641 | None:intergenic |
| TTAAATACATACTTAGAAGG+GGG | 0.664725 | 7_1:+16348327 | Msa1011680:CDS |
| CATGAAACGCAGCAAAACAA+CGG | 0.676249 | 7_1:+16347048 | Msa1011680:exon |
| AAAAGAAAAGGATCCAACCA+AGG | 0.689797 | 7_1:-16352398 | None:intergenic |
| AACAAAACATAAAAGCACAA+GGG | 0.697914 | 7_1:-16351640 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATAAAGTTAAATTGTTT+TGG | + | chr7_1:16347702-16347721 | Msa1011680:intron | 10.0% |
| !! | ACTAAAAATTATTAACAAAA+AGG | - | chr7_1:16348843-16348862 | None:intergenic | 10.0% |
| !!! | CAAGTTTAATTTAATATTAA+GGG | + | chr7_1:16350318-16350337 | Msa1011680:intron | 10.0% |
| !! | ATTTATTATAACAAAAGAAA+AGG | - | chr7_1:16352413-16352432 | None:intergenic | 10.0% |
| !! | CTAAATTATTATAAGTATCA+AGG | - | chr7_1:16348054-16348073 | None:intergenic | 15.0% |
| !! | TAAAAAAAAAAAAAAGAGAG+AGG | - | chr7_1:16348418-16348437 | None:intergenic | 15.0% |
| !! | AAAAATTATTAACAAAAAGG+AGG | - | chr7_1:16348840-16348859 | None:intergenic | 15.0% |
| !! | CTTATAATTAGAAGAAATAA+AGG | + | chr7_1:16349513-16349532 | Msa1011680:intron | 15.0% |
| !! | ATTAAATATCTTTATGTGTA+TGG | + | chr7_1:16350129-16350148 | Msa1011680:intron | 15.0% |
| !! | CCTTAATATTAAATTAAACT+TGG | - | chr7_1:16350320-16350339 | None:intergenic | 15.0% |
| !!! | CCAAGTTTAATTTAATATTA+AGG | + | chr7_1:16350317-16350336 | Msa1011680:intron | 15.0% |
| !! | ACAAATATATAAAACCATAA+GGG | - | chr7_1:16351143-16351162 | None:intergenic | 15.0% |
| !! | AACAAATATATAAAACCATA+AGG | - | chr7_1:16351144-16351163 | None:intergenic | 15.0% |
| !! | AAAATAAATGAACTGATATA+TGG | - | chr7_1:16352092-16352111 | None:intergenic | 15.0% |
| !! | ATAATTTCATTGAAAGAGAA+TGG | - | chr7_1:16347123-16347142 | None:intergenic | 20.0% |
| !! | AGAATATATTAACATCAAAC+TGG | + | chr7_1:16347179-16347198 | Msa1011680:intron | 20.0% |
| !! | GTTACTTATTATTGAAGTAT+TGG | + | chr7_1:16347532-16347551 | Msa1011680:intron | 20.0% |
| !! | TTAAATTGTTTATCCAAACA+AGG | - | chr7_1:16347614-16347633 | None:intergenic | 20.0% |
| !!! | ATATTATGCAAATCATTTTC+TGG | - | chr7_1:16348371-16348390 | None:intergenic | 20.0% |
| !!! | AGAAAATGATTTGCATAATA+TGG | + | chr7_1:16348370-16348389 | Msa1011680:CDS | 20.0% |
| !! | CTAGGAGAAATTTAATAATT+TGG | + | chr7_1:16348801-16348820 | Msa1011680:intron | 20.0% |
| !! | GTGAAAATAAAAATTAGCAT+AGG | - | chr7_1:16349063-16349082 | None:intergenic | 20.0% |
| !! | CACATATAGTATTATTCTTA+AGG | - | chr7_1:16349092-16349111 | None:intergenic | 20.0% |
| !!! | CTTTTCCAATGATTTTAATA+TGG | - | chr7_1:16349244-16349263 | None:intergenic | 20.0% |
| !! | CATATTAAAATCATTGGAAA+AGG | + | chr7_1:16349242-16349261 | Msa1011680:CDS | 20.0% |
| !!! | AAAATTGGTTTGTTCATATT+AGG | - | chr7_1:16349452-16349471 | None:intergenic | 20.0% |
| !!! | AAATAAAGGTATAAGCTAAT+TGG | + | chr7_1:16349527-16349546 | Msa1011680:intron | 20.0% |
| !! | AAGCTATATAAATAAGTAGA+GGG | - | chr7_1:16349825-16349844 | None:intergenic | 20.0% |
| !!! | ATAATATACACTCTATTTTC+TGG | - | chr7_1:16350161-16350180 | None:intergenic | 20.0% |
| !! | AATATTAAATTAAACTTGGC+TGG | - | chr7_1:16350316-16350335 | None:intergenic | 20.0% |
| !!! | ATATACTGAATATTTTTCAG+TGG | - | chr7_1:16350578-16350597 | None:intergenic | 20.0% |
| !!! | TTTGAATTTTTCTGTTTCAT+AGG | + | chr7_1:16350640-16350659 | Msa1011680:intron | 20.0% |
| !!! | AAAGTGTTTCTATAACAATA+TGG | - | chr7_1:16350765-16350784 | None:intergenic | 20.0% |
| !! | TTTAAAAATTGGAGAAGAAA+TGG | - | chr7_1:16350911-16350930 | None:intergenic | 20.0% |
| !!! | GTTGATCTGTTTTTAAAAAT+TGG | - | chr7_1:16350922-16350941 | None:intergenic | 20.0% |
| !!! | TTTATTTGAAATAGCTAACA+AGG | - | chr7_1:16351070-16351089 | None:intergenic | 20.0% |
| !!! | TCACTTTCTAAAAACATTTT+CGG | - | chr7_1:16351115-16351134 | None:intergenic | 20.0% |
| !!! | TTTTACTGTAGTCATTATTT+TGG | + | chr7_1:16351245-16351264 | Msa1011680:intron | 20.0% |
| !!! | CTAATTTTACTAATAGTTAG+TGG | - | chr7_1:16351350-16351369 | None:intergenic | 20.0% |
| ! | AGAAGAAATAAAGGGTAAAA+CGG | - | chr7_1:16347250-16347269 | None:intergenic | 25.0% |
| ! | TATGAAGCAGAAGAAATAAA+GGG | - | chr7_1:16347258-16347277 | None:intergenic | 25.0% |
| ! | TTATGAAGCAGAAGAAATAA+AGG | - | chr7_1:16347259-16347278 | None:intergenic | 25.0% |
| ! | TGTGTATGAGTACTTAATAA+GGG | - | chr7_1:16347292-16347311 | None:intergenic | 25.0% |
| ! | TTTCTCAAATAATTACAGTG+TGG | - | chr7_1:16347337-16347356 | None:intergenic | 25.0% |
| ! | TAGTTAAAGTTAACTACACT+TGG | + | chr7_1:16347587-16347606 | Msa1011680:intron | 25.0% |
| ! | AGTTAAAGTTAACTACACTT+GGG | + | chr7_1:16347588-16347607 | Msa1011680:intron | 25.0% |
| !!! | GTTATTTTCTTGAGCTATAT+TGG | + | chr7_1:16347737-16347756 | Msa1011680:intron | 25.0% |
| ! | GAACTATCATAGAAAATAAG+AGG | - | chr7_1:16348027-16348046 | None:intergenic | 25.0% |
| ! | AGGTTAAATACATACTTAGA+AGG | + | chr7_1:16348324-16348343 | Msa1011680:CDS | 25.0% |
| ! | GGTTAAATACATACTTAGAA+GGG | + | chr7_1:16348325-16348344 | Msa1011680:CDS | 25.0% |
| ! | GTTAAATACATACTTAGAAG+GGG | + | chr7_1:16348326-16348345 | Msa1011680:CDS | 25.0% |
| ! | TTAAATACATACTTAGAAGG+GGG | + | chr7_1:16348327-16348346 | Msa1011680:CDS | 25.0% |
| ! | AAAAAAAAAGAGAGAGGAAA+TGG | - | chr7_1:16348412-16348431 | None:intergenic | 25.0% |
| ! | TAGACTTATAATCTTCACAT+TGG | - | chr7_1:16348461-16348480 | None:intergenic | 25.0% |
| ! | TCAACATGAATTAATCAGTT+AGG | + | chr7_1:16348504-16348523 | Msa1011680:intron | 25.0% |
| ! | CAACATGAATTAATCAGTTA+GGG | + | chr7_1:16348505-16348524 | Msa1011680:intron | 25.0% |
| !! | ACTTATACGTCTTTTATCTA+AGG | - | chr7_1:16348603-16348622 | None:intergenic | 25.0% |
| ! | TTAGATAAAAGACGTATAAG+TGG | + | chr7_1:16348602-16348621 | Msa1011680:intron | 25.0% |
| ! | TAGATAAAAGACGTATAAGT+GGG | + | chr7_1:16348603-16348622 | Msa1011680:intron | 25.0% |
| !! | GATTTTTAACCTCAATTTCA+AGG | - | chr7_1:16348782-16348801 | None:intergenic | 25.0% |
| ! | GAAATTGAGGTTAAAAATCT+AGG | + | chr7_1:16348783-16348802 | Msa1011680:intron | 25.0% |
| !! | AATCTTTTTATCACTGTTTG+TGG | + | chr7_1:16348922-16348941 | Msa1011680:intron | 25.0% |
| !!! | AAAAAGTGTCATCTTCAATA+AGG | - | chr7_1:16349027-16349046 | None:intergenic | 25.0% |
| !!! | ATTGAAGATGACACTTTTTT+TGG | + | chr7_1:16349028-16349047 | Msa1011680:intron | 25.0% |
| ! | CAATTTATAATACCTTTGCT+CGG | + | chr7_1:16349319-16349338 | Msa1011680:intron | 25.0% |
| !! | TTTTGCATATTCTTTTGCTA+TGG | - | chr7_1:16349712-16349731 | None:intergenic | 25.0% |
| ! | CAAGCTATATAAATAAGTAG+AGG | - | chr7_1:16349826-16349845 | None:intergenic | 25.0% |
| !! | GTTAGTAGATTTTGTTAGTT+AGG | - | chr7_1:16349872-16349891 | None:intergenic | 25.0% |
| ! | TATTGTAAAGCGACATAAAT+GGG | - | chr7_1:16349979-16349998 | None:intergenic | 25.0% |
| ! | ATATTGTAAAGCGACATAAA+TGG | - | chr7_1:16349980-16349999 | None:intergenic | 25.0% |
| ! | AGGAGAGTAATTAATAGTTA+GGG | - | chr7_1:16350037-16350056 | None:intergenic | 25.0% |
| ! | TTCAAATATCGAAATACAGT+TGG | - | chr7_1:16350060-16350079 | None:intergenic | 25.0% |
| ! | AAATATCTTTATGTGTATGG+AGG | + | chr7_1:16350132-16350151 | Msa1011680:intron | 25.0% |
| !! | CAGTATATAGATTTAAAACG+AGG | + | chr7_1:16350590-16350609 | Msa1011680:intron | 25.0% |
| !! | ATATAGATTTAAAACGAGGT+AGG | + | chr7_1:16350594-16350613 | Msa1011680:intron | 25.0% |
| ! | AAAATGAGAACCAAAAACAT+AGG | - | chr7_1:16350841-16350860 | None:intergenic | 25.0% |
| ! | ATCTTCAACTAATAAACATG+AGG | + | chr7_1:16350861-16350880 | Msa1011680:intron | 25.0% |
| ! | CGAATGTCATAATTAAGTAT+TGG | - | chr7_1:16351178-16351197 | None:intergenic | 25.0% |
| ! | CATTAAAGTCTTACATTAGA+TGG | - | chr7_1:16351392-16351411 | None:intergenic | 25.0% |
| !!! | TGGTTTTAAATGCATTAGTT+CGG | + | chr7_1:16351509-16351528 | Msa1011680:intron | 25.0% |
| !! | AACAAAACATAAAAGCACAA+GGG | - | chr7_1:16351643-16351662 | None:intergenic | 25.0% |
| !! | AAACAAAACATAAAAGCACA+AGG | - | chr7_1:16351644-16351663 | None:intergenic | 25.0% |
| ! | CATTGATCATTCTTAGATAA+TGG | + | chr7_1:16351773-16351792 | Msa1011680:intron | 25.0% |
| ! | AAGCATAGATTGTTTATCTT+CGG | + | chr7_1:16351863-16351882 | Msa1011680:intron | 25.0% |
| ! | TAGAGATGAATACTGATATA+TGG | + | chr7_1:16352004-16352023 | Msa1011680:intron | 25.0% |
| ! | GCAAAAGAATCTGTAATATT+TGG | + | chr7_1:16352534-16352553 | Msa1011680:three_prime_UTR | 25.0% |
| ATATTAACATCAAACTGGCA+AGG | + | chr7_1:16347184-16347203 | Msa1011680:CDS | 30.0% | |
| GAAGAAATAAAGGGTAAAAC+GGG | - | chr7_1:16347249-16347268 | None:intergenic | 30.0% | |
| GTGTGTATGAGTACTTAATA+AGG | - | chr7_1:16347293-16347312 | None:intergenic | 30.0% | |
| ATTAAGTACTCATACACACA+CGG | + | chr7_1:16347294-16347313 | Msa1011680:intron | 30.0% | |
| TTGAATGTAATCACATGTGT+CGG | + | chr7_1:16347367-16347386 | Msa1011680:intron | 30.0% | |
| CTGAATACTCATTTGATCAA+AGG | + | chr7_1:16347419-16347438 | Msa1011680:intron | 30.0% | |
| CTAGTAGATAAGCTCAAATA+AGG | + | chr7_1:16347886-16347905 | Msa1011680:intron | 30.0% | |
| ! | AGAAAGTGTATGAAACAGTT+TGG | - | chr7_1:16347991-16348010 | None:intergenic | 30.0% |
| !! | TGCACAAAGTATTTTGCTAA+TGG | + | chr7_1:16348248-16348267 | Msa1011680:intron | 30.0% |
| !! | GCACAAAGTATTTTGCTAAT+GGG | + | chr7_1:16348249-16348268 | Msa1011680:intron | 30.0% |
| TTGTATGATTTCAACAGCAA+AGG | + | chr7_1:16348284-16348303 | Msa1011680:intron | 30.0% | |
| AGGAGATATTCATACATCTA+AGG | + | chr7_1:16348304-16348323 | Msa1011680:CDS | 30.0% | |
| ! | TCAATCAATGTGAGACTTTT+TGG | + | chr7_1:16348669-16348688 | Msa1011680:intron | 30.0% |
| TGAAACAGTAACGTATATTG+AGG | + | chr7_1:16348697-16348716 | Msa1011680:intron | 30.0% | |
| ! | AGAGAGATAGCTTTTATCTA+AGG | + | chr7_1:16348741-16348760 | Msa1011680:intron | 30.0% |
| ! | GAGAGATAGCTTTTATCTAA+GGG | + | chr7_1:16348742-16348761 | Msa1011680:intron | 30.0% |
| TAAGAATCTCCTTGAAATTG+AGG | + | chr7_1:16348770-16348789 | Msa1011680:intron | 30.0% | |
| GTGATAAAAAGATTAAGCAG+AGG | - | chr7_1:16348916-16348935 | None:intergenic | 30.0% | |
| ! | AGTGTTCTAAACATTTCTTC+TGG | - | chr7_1:16349003-16349022 | None:intergenic | 30.0% |
| !!! | AAGATGACACTTTTTTTGGA+GGG | + | chr7_1:16349032-16349051 | Msa1011680:intron | 30.0% |
| !! | ATTTTAATATGGCTCCTAGT+CGG | - | chr7_1:16349233-16349252 | None:intergenic | 30.0% |
| AGGAGCCATATTAAAATCAT+TGG | + | chr7_1:16349236-16349255 | Msa1011680:CDS | 30.0% | |
| AGAAAACATGTATATCCTAC+AGG | - | chr7_1:16349277-16349296 | None:intergenic | 30.0% | |
| AATACCTTATCTTCATTGAG+AGG | - | chr7_1:16349607-16349626 | None:intergenic | 30.0% | |
| TGTAAACTTCCTGAATATTC+TGG | + | chr7_1:16349737-16349756 | Msa1011680:intron | 30.0% | |
| AAATAAGTAGAGGGTTTGAT+GGG | - | chr7_1:16349816-16349835 | None:intergenic | 30.0% | |
| TAAATAAGTAGAGGGTTTGA+TGG | - | chr7_1:16349817-16349836 | None:intergenic | 30.0% | |
| TTGGAATGTGATAAATCTGA+TGG | - | chr7_1:16349894-16349913 | None:intergenic | 30.0% | |
| GAGGAGAGTAATTAATAGTT+AGG | - | chr7_1:16350038-16350057 | None:intergenic | 30.0% | |
| AAATATCGAAATACAGTTGG+AGG | - | chr7_1:16350057-16350076 | None:intergenic | 30.0% | |
| CTCACATTAGAAAAAGAAGA+TGG | - | chr7_1:16350266-16350285 | None:intergenic | 30.0% | |
| ! | AATTGATGCTTTGTTGATCT+TGG | + | chr7_1:16350402-16350421 | Msa1011680:intron | 30.0% |
| TGATAATCTTCAGGAACTAT+TGG | + | chr7_1:16350549-16350568 | Msa1011680:CDS | 30.0% | |
| GATAATCTTCAGGAACTATT+GGG | + | chr7_1:16350550-16350569 | Msa1011680:CDS | 30.0% | |
| ! | ATATGGATTAACCAAGTGTT+CGG | - | chr7_1:16350720-16350739 | None:intergenic | 30.0% |
| ! | TCGTATACTTCCTATGTTTT+TGG | + | chr7_1:16350828-16350847 | Msa1011680:intron | 30.0% |
| AGATCTTGCACATTTATTGA+TGG | + | chr7_1:16351415-16351434 | Msa1011680:CDS | 30.0% | |
| ! | GAACTAATGCATTTAAAACC+AGG | - | chr7_1:16351510-16351529 | None:intergenic | 30.0% |
| TCATTAAGTTACCTTTGCAT+TGG | - | chr7_1:16351676-16351695 | None:intergenic | 30.0% | |
| ATAGATTGTTTATCTTCGGA+TGG | + | chr7_1:16351867-16351886 | Msa1011680:intron | 30.0% | |
| ATGAATACTGATATATGGCA+GGG | + | chr7_1:16352009-16352028 | Msa1011680:intron | 30.0% | |
| TTGACAGAATGTTTCAACAT+CGG | - | chr7_1:16352306-16352325 | None:intergenic | 30.0% | |
| TAAACTAAAACATGCAACCT+TGG | + | chr7_1:16352381-16352400 | Msa1011680:exon | 30.0% | |
| TGATGAATTGATTGTCAAGA+TGG | + | chr7_1:16352588-16352607 | Msa1011680:three_prime_UTR | 30.0% | |
| !! | AGCAAATGTTATGTCGACTT+TGG | - | chr7_1:16346976-16346995 | None:intergenic | 35.0% |
| ACTATCAAAGCAGATGCTAA+AGG | + | chr7_1:16347217-16347236 | Msa1011680:CDS | 35.0% | |
| GTACTTAATAAGGGAGTCTA+AGG | - | chr7_1:16347283-16347302 | None:intergenic | 35.0% | |
| ! | ACTCATTTGATCAAAGGTGT+TGG | + | chr7_1:16347425-16347444 | Msa1011680:intron | 35.0% |
| !! | ACAAACTTCAAGTTGTGCTA+GGG | - | chr7_1:16347484-16347503 | None:intergenic | 35.0% |
| !! | TACAAACTTCAAGTTGTGCT+AGG | - | chr7_1:16347485-16347504 | None:intergenic | 35.0% |
| ! | AACATGTTGTAAGCTGCTTT+AGG | + | chr7_1:16347794-16347813 | Msa1011680:intron | 35.0% |
| ! | ACATGTTGTAAGCTGCTTTA+GGG | + | chr7_1:16347795-16347814 | Msa1011680:intron | 35.0% |
| TTTAACTGAAAACCAACCCT+GGG | - | chr7_1:16347925-16347944 | None:intergenic | 35.0% | |
| !! | TTTTAACTGAAAACCAACCC+TGG | - | chr7_1:16347926-16347945 | None:intergenic | 35.0% |
| TCCTTACGACATGTTTGTAT+TGG | + | chr7_1:16348100-16348119 | Msa1011680:intron | 35.0% | |
| CCTTACGACATGTTTGTATT+GGG | + | chr7_1:16348101-16348120 | Msa1011680:intron | 35.0% | |
| GAGTGAGTTTGAAGAAATCA+CGG | + | chr7_1:16348123-16348142 | Msa1011680:intron | 35.0% | |
| ! | TGTAGCTTTTGCTAAAATCG+TGG | + | chr7_1:16348183-16348202 | Msa1011680:intron | 35.0% |
| AAAAAGAGAGAGGAAATGGA+AGG | - | chr7_1:16348408-16348427 | None:intergenic | 35.0% | |
| ! | TTCTAAGGGATTGTACACTT+TGG | + | chr7_1:16348550-16348569 | Msa1011680:intron | 35.0% |
| TGATTGAGAGTTGAGGTTAA+GGG | - | chr7_1:16348656-16348675 | None:intergenic | 35.0% | |
| TTGATTGAGAGTTGAGGTTA+AGG | - | chr7_1:16348657-16348676 | None:intergenic | 35.0% | |
| !!! | GAAGATGACACTTTTTTTGG+AGG | + | chr7_1:16349031-16349050 | Msa1011680:intron | 35.0% |
| CAGATCGCAGCAAAAAAAAT+TGG | - | chr7_1:16349467-16349486 | None:intergenic | 35.0% | |
| !!! | ATTTTTTTTGCTGCGATCTG+TGG | + | chr7_1:16349467-16349486 | Msa1011680:intron | 35.0% |
| TCTTCCTCTCAATGAAGATA+AGG | + | chr7_1:16349600-16349619 | Msa1011680:CDS | 35.0% | |
| GTAATTGACACTCGTGAAAT+TGG | - | chr7_1:16349913-16349932 | None:intergenic | 35.0% | |
| GACTTTCATTGTGAGACAAA+GGG | - | chr7_1:16349937-16349956 | None:intergenic | 35.0% | |
| TGACTTTCATTGTGAGACAA+AGG | - | chr7_1:16349938-16349957 | None:intergenic | 35.0% | |
| CGCTGTAGATTTGAAAACTA+TGG | + | chr7_1:16350100-16350119 | Msa1011680:intron | 35.0% | |
| AAGTTTAGTTACACTGTGTC+TGG | + | chr7_1:16350490-16350509 | Msa1011680:CDS | 35.0% | |
| GTGAATGCAAAGATTGTATC+TGG | + | chr7_1:16350662-16350681 | Msa1011680:intron | 35.0% | |
| !! | TGTATCTGGTTCTAGTATCT+AGG | + | chr7_1:16350676-16350695 | Msa1011680:intron | 35.0% |
| ! | TATGGATTAACCAAGTGTTC+GGG | - | chr7_1:16350719-16350738 | None:intergenic | 35.0% |
| !! | GCTATTTTGTTTCCTTCATG+TGG | + | chr7_1:16350798-16350817 | Msa1011680:intron | 35.0% |
| TTGTTTCCTTCATGTGGTTT+AGG | + | chr7_1:16350804-16350823 | Msa1011680:intron | 35.0% | |
| AAATTGGAGAAGAAATGGTG+AGG | - | chr7_1:16350906-16350925 | None:intergenic | 35.0% | |
| GGAGATGGAAAATTTGTGTA+GGG | - | chr7_1:16351049-16351068 | None:intergenic | 35.0% | |
| AGGAGATGGAAAATTTGTGT+AGG | - | chr7_1:16351050-16351069 | None:intergenic | 35.0% | |
| TGAAATAGCTAACAAGGAGA+TGG | - | chr7_1:16351064-16351083 | None:intergenic | 35.0% | |
| TTATCCTGATCACACTTCAT+TGG | - | chr7_1:16351327-16351346 | None:intergenic | 35.0% | |
| GATGTGGATGTTGAAGATTT+AGG | + | chr7_1:16351454-16351473 | Msa1011680:CDS | 35.0% | |
| ACATCCAAAGCTGATCAATT+AGG | + | chr7_1:16351478-16351497 | Msa1011680:CDS | 35.0% | |
| TTCACCTAATTGATCAGCTT+TGG | - | chr7_1:16351485-16351504 | None:intergenic | 35.0% | |
| TCAATCAACTTCGCAGAAAA+TGG | - | chr7_1:16351588-16351607 | None:intergenic | 35.0% | |
| !! | TTTTCTGCGAAGTTGATTGA+TGG | + | chr7_1:16351588-16351607 | Msa1011680:CDS | 35.0% |
| ! | TTTCTGCGAAGTTGATTGAT+GGG | + | chr7_1:16351589-16351608 | Msa1011680:CDS | 35.0% |
| TTACATGAACACCAATGCAA+AGG | + | chr7_1:16351662-16351681 | Msa1011680:CDS | 35.0% | |
| TGTCTTCTTGATTACAAGTG+TGG | + | chr7_1:16351740-16351759 | Msa1011680:intron | 35.0% | |
| ! | GTTGCATAGCATTTTAGATG+CGG | + | chr7_1:16351799-16351818 | Msa1011680:intron | 35.0% |
| ! | TTGCATAGCATTTTAGATGC+GGG | + | chr7_1:16351800-16351819 | Msa1011680:intron | 35.0% |
| ! | GTATTCATCTCTAAGAAGCA+TGG | - | chr7_1:16351997-16352016 | None:intergenic | 35.0% |
| GATGAATACTGATATATGGC+AGG | + | chr7_1:16352008-16352027 | Msa1011680:intron | 35.0% | |
| !!! | CTGATACCTTGTTTTGTCTT+AGG | + | chr7_1:16352061-16352080 | Msa1011680:intron | 35.0% |
| GTTAGTCCTAAGACAAAACA+AGG | - | chr7_1:16352070-16352089 | None:intergenic | 35.0% | |
| TTAACAACTAATGAAGCCTG+TGG | + | chr7_1:16352138-16352157 | Msa1011680:intron | 35.0% | |
| ! | CTGTCAACATCTAGTTCAAA+TGG | + | chr7_1:16352319-16352338 | Msa1011680:CDS | 35.0% |
| ! | ACATCTAGTTCAAATGGAAG+AGG | + | chr7_1:16352325-16352344 | Msa1011680:CDS | 35.0% |
| !!! | GTTTTAGTTTAGTCCACTAG+AGG | - | chr7_1:16352372-16352391 | None:intergenic | 35.0% |
| AAAAGAAAAGGATCCAACCA+AGG | - | chr7_1:16352401-16352420 | None:intergenic | 35.0% | |
| CATTTGCTTGCAGACACAAA+CGG | + | chr7_1:16346988-16347007 | Msa1011680:intron | 40.0% | |
| ! | AAACGGTACTTTTCTCGAAC+AGG | + | chr7_1:16347005-16347024 | Msa1011680:five_prime_UTR | 40.0% |
| CATGAAACGCAGCAAAACAA+CGG | + | chr7_1:16347048-16347067 | Msa1011680:exon | 40.0% | |
| AACATTCGCTGAGAAATGCA+AGG | + | chr7_1:16347075-16347094 | Msa1011680:CDS | 40.0% | |
| AGAGAATGGAAGAGAAGAGA+AGG | - | chr7_1:16347109-16347128 | None:intergenic | 40.0% | |
| TCAAAGCAGATGCTAAAGGA+AGG | + | chr7_1:16347221-16347240 | Msa1011680:CDS | 40.0% | |
| GAGCTATATTGGAGAGCTTA+TGG | + | chr7_1:16347748-16347767 | Msa1011680:intron | 40.0% | |
| AAGGAAATCTAAACATGCCC+AGG | + | chr7_1:16347905-16347924 | Msa1011680:intron | 40.0% | |
| AGGAAATCTAAACATGCCCA+GGG | + | chr7_1:16347906-16347925 | Msa1011680:intron | 40.0% | |
| CCCAATACAAACATGTCGTA+AGG | - | chr7_1:16348104-16348123 | None:intergenic | 40.0% | |
| TGAGTTTGAAGAAATCACGG+TGG | + | chr7_1:16348126-16348145 | Msa1011680:intron | 40.0% | |
| GTGTCAATTGACAGTGAGTT+TGG | - | chr7_1:16348227-16348246 | None:intergenic | 40.0% | |
| !! | TTTTCTGGCACCCAAAGATA+TGG | - | chr7_1:16348356-16348375 | None:intergenic | 40.0% |
| ! | TCTGCTGTACGACTTTTCTA+AGG | + | chr7_1:16348535-16348554 | Msa1011680:intron | 40.0% |
| ! | CTGCTGTACGACTTTTCTAA+GGG | + | chr7_1:16348536-16348555 | Msa1011680:intron | 40.0% |
| GGCTCTTGTATAATCTCTCA+CGG | + | chr7_1:16348571-16348590 | Msa1011680:intron | 40.0% | |
| !! | AAAGACGTATAAGTGGGTTG+AGG | + | chr7_1:16348609-16348628 | Msa1011680:intron | 40.0% |
| ! | CTCACATTGATTGAGAGTTG+AGG | - | chr7_1:16348663-16348682 | None:intergenic | 40.0% |
| !!! | TGAGTACTTTTTCCAGTTGC+AGG | + | chr7_1:16349125-16349144 | Msa1011680:intron | 40.0% |
| AACACAATCATTGATGAGCG+TGG | + | chr7_1:16349177-16349196 | Msa1011680:CDS | 40.0% | |
| CTGAGATCTCCAGAATATTC+AGG | - | chr7_1:16349749-16349768 | None:intergenic | 40.0% | |
| TTTCGGTGAGGATTTGAATC+AGG | - | chr7_1:16349784-16349803 | None:intergenic | 40.0% | |
| TGATTCAAATCCTCACCGAA+AGG | + | chr7_1:16349783-16349802 | Msa1011680:intron | 40.0% | |
| TTGATGGGAGTTAGTCCTTT+CGG | - | chr7_1:16349801-16349820 | None:intergenic | 40.0% | |
| GCTGGAGTATAAGTGAAAGT+AGG | - | chr7_1:16350298-16350317 | None:intergenic | 40.0% | |
| ! | TGCTTTGTTGATCTTGGTGT+AGG | + | chr7_1:16350408-16350427 | Msa1011680:intron | 40.0% |
| TCATGAAGTCATACGATCTG+AGG | + | chr7_1:16350453-16350472 | Msa1011680:CDS | 40.0% | |
| ! | TCTGGAGTACTAAGTTCTAG+TGG | + | chr7_1:16350508-16350527 | Msa1011680:CDS | 40.0% |
| ! | CTGGAGTACTAAGTTCTAGT+GGG | + | chr7_1:16350509-16350528 | Msa1011680:CDS | 40.0% |
| ATCGCGAAGTGATAATCTTC+AGG | + | chr7_1:16350540-16350559 | Msa1011680:CDS | 40.0% | |
| AAAACGAGGTAGGAACTTGT+AGG | + | chr7_1:16350604-16350623 | Msa1011680:intron | 40.0% | |
| !! | TCTGGTTCTAGTATCTAGGT+TGG | + | chr7_1:16350680-16350699 | Msa1011680:intron | 40.0% |
| TTAACCAAGTGTTCGGGATT+GGG | - | chr7_1:16350713-16350732 | None:intergenic | 40.0% | |
| ATTAACCAAGTGTTCGGGAT+TGG | - | chr7_1:16350714-16350733 | None:intergenic | 40.0% | |
| TGCGTGTTAAGCTTGCAATA+TGG | - | chr7_1:16350737-16350756 | None:intergenic | 40.0% | |
| TACGAACCTAAACCACATGA+AGG | - | chr7_1:16350813-16350832 | None:intergenic | 40.0% | |
| !! | CACTTGCTATTGAGAGAAGA+TGG | - | chr7_1:16351024-16351043 | None:intergenic | 40.0% |
| CATTCGAGTAATGTTAACCC+CGG | + | chr7_1:16351192-16351211 | Msa1011680:intron | 40.0% | |
| ! | TGCACATTTATTGATGGCCA+TGG | + | chr7_1:16351421-16351440 | Msa1011680:CDS | 40.0% |
| ! | ACATTTATTGATGGCCATGG+AGG | + | chr7_1:16351424-16351443 | Msa1011680:CDS | 40.0% |
| TGATCAATTAGGTGAAGACC+TGG | + | chr7_1:16351489-16351508 | Msa1011680:intron | 40.0% | |
| GGATTAACCAAAGTGAAGCT+AGG | + | chr7_1:16351610-16351629 | Msa1011680:CDS | 40.0% | |
| AGTAACCAATTGCAGGATCA+GGG | - | chr7_1:16351717-16351736 | None:intergenic | 40.0% | |
| AAGTAACCAATTGCAGGATC+AGG | - | chr7_1:16351718-16351737 | None:intergenic | 40.0% | |
| GACATCAAGTAACCAATTGC+AGG | - | chr7_1:16351724-16351743 | None:intergenic | 40.0% | |
| AGATGCGGGAATATGTGTTA+CGG | + | chr7_1:16351814-16351833 | Msa1011680:intron | 40.0% | |
| TTGTTTATCTTCGGATGGCA+TGG | + | chr7_1:16351872-16351891 | Msa1011680:intron | 40.0% | |
| !! | AAGCCTGTGGTGTTGTATTA+AGG | + | chr7_1:16352151-16352170 | Msa1011680:intron | 40.0% |
| CATCCTTAATACAACACCAC+AGG | - | chr7_1:16352157-16352176 | None:intergenic | 40.0% | |
| GATGTGCTAGCAAAAGTTAC+TGG | + | chr7_1:16352209-16352228 | Msa1011680:CDS | 40.0% | |
| AGTTACTGGTCCTGTTTCAA+AGG | + | chr7_1:16352223-16352242 | Msa1011680:CDS | 40.0% | |
| ! | TCTAGTTCAAATGGAAGAGG+AGG | + | chr7_1:16352328-16352347 | Msa1011680:CDS | 40.0% |
| CTAAAACATGCAACCTTGGT+TGG | + | chr7_1:16352385-16352404 | Msa1011680:exon | 40.0% | |
| TCTCGTTGACGAAAAAAGAG+AGG | - | chr7_1:16352507-16352526 | None:intergenic | 40.0% | |
| !! | CGTTGTTTTGCTGCGTTTCA+TGG | - | chr7_1:16347050-16347069 | None:intergenic | 45.0% |
| GAATGGAAGAGAAGAGAAGG+AGG | - | chr7_1:16347106-16347125 | None:intergenic | 45.0% | |
| CAAGTTGTGCTAGGGAGTAA+GGG | - | chr7_1:16347476-16347495 | None:intergenic | 45.0% | |
| ! | TCAAGTTGTGCTAGGGAGTA+AGG | - | chr7_1:16347477-16347496 | None:intergenic | 45.0% |
| !! | AACTACACTTGGGCCTTGTT+TGG | + | chr7_1:16347598-16347617 | Msa1011680:intron | 45.0% |
| AATCTAAACATGCCCAGGGT+TGG | + | chr7_1:16347910-16347929 | Msa1011680:intron | 45.0% | |
| CAAACTAGTCATCCTGCAAC+TGG | - | chr7_1:16349140-16349159 | None:intergenic | 45.0% | |
| AAAAGGTTGTGTGTGCCTGT+AGG | + | chr7_1:16349259-16349278 | Msa1011680:intron | 45.0% | |
| ! | TTTTGTGGAGAACCGAGCAA+AGG | - | chr7_1:16349334-16349353 | None:intergenic | 45.0% |
| ! | CGACGTTGCTAGTGATTTTG+TGG | - | chr7_1:16349349-16349368 | None:intergenic | 45.0% |
| ! | TTCTGGAGATCTCAGACTCT+TGG | + | chr7_1:16349754-16349773 | Msa1011680:intron | 45.0% |
| TAACCAAGTGTTCGGGATTG+GGG | - | chr7_1:16350712-16350731 | None:intergenic | 45.0% | |
| GAGAAGATGGAAGTCAAGCT+AGG | - | chr7_1:16351011-16351030 | None:intergenic | 45.0% | |
| AGAAAGTGAACACGCCCTTA+TGG | + | chr7_1:16351126-16351145 | Msa1011680:intron | 45.0% | |
| TAGCAGATGCATACCGAACA+AGG | - | chr7_1:16351219-16351238 | None:intergenic | 45.0% | |
| GATCACACTTCATTGGATGC+AGG | - | chr7_1:16351320-16351339 | None:intergenic | 45.0% | |
| GCATCCAATGAAGTGTGATC+AGG | + | chr7_1:16351320-16351339 | Msa1011680:intron | 45.0% | |
| !! | CCACATCAAAAGTACCTCCA+TGG | - | chr7_1:16351441-16351460 | None:intergenic | 45.0% |
| !!! | CCATGGAGGTACTTTTGATG+TGG | + | chr7_1:16351438-16351457 | Msa1011680:CDS | 45.0% |
| TTACACCCTGATCCTGCAAT+TGG | + | chr7_1:16351709-16351728 | Msa1011680:intron | 45.0% | |
| GGTAGCTTCTGTAGTATTGC+TGG | + | chr7_1:16351964-16351983 | Msa1011680:intron | 45.0% | |
| ! | AAGGTATCAGCATGCAACTG+CGG | - | chr7_1:16352051-16352070 | None:intergenic | 45.0% |
| TGTAACATCCGTTGATCGCA+AGG | + | chr7_1:16352181-16352200 | Msa1011680:CDS | 45.0% | |
| GTAACATCCGTTGATCGCAA+GGG | + | chr7_1:16352182-16352201 | Msa1011680:CDS | 45.0% | |
| ATCGAATCCCTTGCGATCAA+CGG | - | chr7_1:16352192-16352211 | None:intergenic | 45.0% | |
| ACTGGTCCTGTTTCAAAGGA+TGG | + | chr7_1:16352227-16352246 | Msa1011680:CDS | 45.0% | |
| !! | ATGGCGTTGGTCAATACCAA+TGG | + | chr7_1:16352246-16352265 | Msa1011680:CDS | 45.0% |
| AATACCAATGGACAGAGCTC+AGG | + | chr7_1:16352258-16352277 | Msa1011680:CDS | 45.0% | |
| TGGAAGAGGAGGTCATCAAA+AGG | + | chr7_1:16352339-16352358 | Msa1011680:CDS | 45.0% | |
| GGAAGAGGAGGTCATCAAAA+GGG | + | chr7_1:16352340-16352359 | Msa1011680:CDS | 45.0% | |
| AAAAGGGTTTCAGCCTCTAG+TGG | + | chr7_1:16352356-16352375 | Msa1011680:CDS | 45.0% | |
| ! | CGGTACTTTTCTCGAACAGG+TGG | + | chr7_1:16347008-16347027 | Msa1011680:five_prime_UTR | 50.0% |
| !! | CACATGTGTCGGTGTCAAGT+CGG | + | chr7_1:16347378-16347397 | Msa1011680:intron | 50.0% |
| GAAGAAATCACGGTGGCAAC+TGG | + | chr7_1:16348133-16348152 | Msa1011680:intron | 50.0% | |
| AAGGGGGCAGCCATATCTTT+GGG | + | chr7_1:16348343-16348362 | Msa1011680:CDS | 50.0% | |
| CGCAACACAATAGTGAACGC+AGG | - | chr7_1:16349374-16349393 | None:intergenic | 50.0% | |
| ACATGCTGCAGTTACCAGCT+CGG | + | chr7_1:16349557-16349576 | Msa1011680:intron | 50.0% | |
| ! | CAGCTCGGGTTGCTTTATCT+GGG | + | chr7_1:16349572-16349591 | Msa1011680:CDS | 50.0% |
| ! | AGCTCGGGTTGCTTTATCTG+GGG | + | chr7_1:16349573-16349592 | Msa1011680:CDS | 50.0% |
| ! | GTTGATCTTGGTGTAGGCCA+AGG | + | chr7_1:16350414-16350433 | Msa1011680:intron | 50.0% |
| AACTTTCTCTGTGAGCGCCT+TGG | - | chr7_1:16350434-16350453 | None:intergenic | 50.0% | |
| AACCAAGTGTTCGGGATTGG+GGG | - | chr7_1:16350711-16350730 | None:intergenic | 50.0% | |
| TGTTAACCCCGGACCTTGTT+CGG | + | chr7_1:16351203-16351222 | Msa1011680:intron | 50.0% | |
| ATGCATACCGAACAAGGTCC+GGG | - | chr7_1:16351213-16351232 | None:intergenic | 50.0% | |
| GATGCATACCGAACAAGGTC+CGG | - | chr7_1:16351214-16351233 | None:intergenic | 50.0% | |
| TCGGTATGCATCTGCTAGTC+TGG | + | chr7_1:16351222-16351241 | Msa1011680:intron | 50.0% | |
| CTCTACGCCTAGCTTCACTT+TGG | - | chr7_1:16351620-16351639 | None:intergenic | 50.0% | |
| !! | CCAACGCCATCCTTTGAAAC+AGG | - | chr7_1:16352236-16352255 | None:intergenic | 50.0% |
| CCTGTTTCAAAGGATGGCGT+TGG | + | chr7_1:16352233-16352252 | Msa1011680:CDS | 50.0% | |
| TGAACCTGAGCTCTGTCCAT+TGG | - | chr7_1:16352265-16352284 | None:intergenic | 50.0% | |
| CAGGTTCATGTTCGAGCAAG+AGG | + | chr7_1:16352277-16352296 | Msa1011680:CDS | 50.0% | |
| GAAGGGGGCAGCCATATCTT+TGG | + | chr7_1:16348342-16348361 | Msa1011680:CDS | 55.0% | |
| GCTGTGACCTGTCCATTTCC+AGG | + | chr7_1:16349207-16349226 | Msa1011680:CDS | 55.0% | |
| TAGTCGGCCTGGAAATGGAC+AGG | - | chr7_1:16349217-16349236 | None:intergenic | 55.0% | |
| TGTCCATTTCCAGGCCGACT+AGG | + | chr7_1:16349216-16349235 | Msa1011680:CDS | 55.0% | |
| AATATGGCTCCTAGTCGGCC+TGG | - | chr7_1:16349228-16349247 | None:intergenic | 55.0% | |
| CATGCTGCAGTTACCAGCTC+GGG | + | chr7_1:16349558-16349577 | Msa1011680:intron | 55.0% | |
| CCAGATAAAGCAACCCGAGC+TGG | - | chr7_1:16349574-16349593 | None:intergenic | 55.0% | |
| ! | CCAGCTCGGGTTGCTTTATC+TGG | + | chr7_1:16349571-16349590 | Msa1011680:CDS | 55.0% |
| GGGAGTTAGTCCTTTCGGTG+AGG | - | chr7_1:16349796-16349815 | None:intergenic | 55.0% | |
| TTCCCCCAATCCCGAACACT+TGG | + | chr7_1:16350706-16350725 | Msa1011680:intron | 55.0% | |
| TGCATACCGAACAAGGTCCG+GGG | - | chr7_1:16351212-16351231 | None:intergenic | 55.0% | |
| GCTCCTAGTCGGCCTGGAAA+TGG | - | chr7_1:16349222-16349241 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_1 | gene | 16346950 | 16352645 | 16346950 | ID=Msa1011680;Name=Msa1011680 |
| chr7_1 | mRNA | 16346950 | 16352645 | 16346950 | ID=Msa1011680-mRNA-1;Parent=Msa1011680;Name=Msa1011680-mRNA-1;_AED=0.08;_eAED=0.08;_QI=72|0.88|0.8|1|0.88|0.8|10|257|305 |
| chr7_1 | exon | 16346950 | 16346963 | 16346950 | ID=Msa1011680-mRNA-1:exon:4168;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16346991 | 16347096 | 16346991 | ID=Msa1011680-mRNA-1:exon:4169;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16347181 | 16347242 | 16347181 | ID=Msa1011680-mRNA-1:exon:4170;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16348301 | 16348391 | 16348301 | ID=Msa1011680-mRNA-1:exon:4171;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16349177 | 16349263 | 16349177 | ID=Msa1011680-mRNA-1:exon:4172;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16349568 | 16349621 | 16349568 | ID=Msa1011680-mRNA-1:exon:4173;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16350430 | 16350591 | 16350430 | ID=Msa1011680-mRNA-1:exon:4174;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16351403 | 16351499 | 16351403 | ID=Msa1011680-mRNA-1:exon:4175;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16351583 | 16351683 | 16351583 | ID=Msa1011680-mRNA-1:exon:4176;Parent=Msa1011680-mRNA-1 |
| chr7_1 | exon | 16352173 | 16352645 | 16352173 | ID=Msa1011680-mRNA-1:exon:4177;Parent=Msa1011680-mRNA-1 |
| chr7_1 | five_prime_UTR | 16346950 | 16346963 | 16346950 | ID=Msa1011680-mRNA-1:five_prime_utr;Parent=Msa1011680-mRNA-1 |
| chr7_1 | five_prime_UTR | 16346991 | 16347048 | 16346991 | ID=Msa1011680-mRNA-1:five_prime_utr;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16347049 | 16347096 | 16347049 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16347181 | 16347242 | 16347181 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16348301 | 16348391 | 16348301 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16349177 | 16349263 | 16349177 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16349568 | 16349621 | 16349568 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16350430 | 16350591 | 16350430 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16351403 | 16351499 | 16351403 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16351583 | 16351683 | 16351583 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | CDS | 16352173 | 16352388 | 16352173 | ID=Msa1011680-mRNA-1:cds;Parent=Msa1011680-mRNA-1 |
| chr7_1 | three_prime_UTR | 16352389 | 16352645 | 16352389 | ID=Msa1011680-mRNA-1:three_prime_utr;Parent=Msa1011680-mRNA-1 |
| Gene Sequence |
| Protein sequence |
