Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427200 | XP_003602540.2 | 94.891 | 274 | 13 | 1 | 1 | 274 | 1 | 273 | 0.0 | 510 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427200 | G7JAW9 | 94.891 | 274 | 13 | 1 | 1 | 274 | 1 | 273 | 0.0 | 510 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0011720 | Msa0427200 | 0.803858 | 2.852451e-49 | -8.615850e-47 |
| Msa0013050 | Msa0427200 | -0.806922 | 6.499748e-50 | -8.615850e-47 |
| Msa0024680 | Msa0427200 | 0.806882 | 6.629333e-50 | -8.615850e-47 |
| Msa0027540 | Msa0427200 | 0.810398 | 1.175900e-50 | -8.615850e-47 |
| Msa0030380 | Msa0427200 | 0.832644 | 8.406232e-56 | -8.615850e-47 |
| Msa0032840 | Msa0427200 | -0.805120 | 1.556090e-49 | -8.615850e-47 |
| Msa0044710 | Msa0427200 | 0.816658 | 4.937904e-52 | -8.615850e-47 |
| Msa0046750 | Msa0427200 | 0.806002 | 1.016411e-49 | -8.615850e-47 |
| Msa0049650 | Msa0427200 | -0.812071 | 5.098125e-51 | -8.615850e-47 |
| Msa0050430 | Msa0427200 | 0.824941 | 6.143348e-54 | -8.615850e-47 |
| Msa0074950 | Msa0427200 | -0.818382 | 2.018081e-52 | -8.615850e-47 |
| Msa0075310 | Msa0427200 | 0.814152 | 1.782237e-51 | -8.615850e-47 |
| Msa0094920 | Msa0427200 | 0.817155 | 3.817479e-52 | -8.615850e-47 |
| Msa0095380 | Msa0427200 | 0.833513 | 5.109343e-56 | -8.615850e-47 |
| Msa0105420 | Msa0427200 | 0.805003 | 1.646383e-49 | -8.615850e-47 |
| Msa0107250 | Msa0427200 | 0.813374 | 2.643394e-51 | -8.615850e-47 |
| Msa0112710 | Msa0427200 | -0.802670 | 5.023955e-49 | -8.615850e-47 |
| Msa0113970 | Msa0427200 | 0.803567 | 3.278540e-49 | -8.615850e-47 |
| Msa0114540 | Msa0427200 | -0.800694 | 1.278196e-48 | -8.615850e-47 |
| Msa0143430 | Msa0427200 | 0.805478 | 1.309501e-49 | -8.615850e-47 |
| Msa0145950 | Msa0427200 | 0.831725 | 1.418058e-55 | -8.615850e-47 |
| Msa0148120 | Msa0427200 | 0.817552 | 3.108542e-52 | -8.615850e-47 |
| Msa0156650 | Msa0427200 | -0.821499 | 3.908042e-53 | -8.615850e-47 |
| Msa0168100 | Msa0427200 | 0.818150 | 2.277923e-52 | -8.615850e-47 |
| Msa0172350 | Msa0427200 | 0.818298 | 2.108173e-52 | -8.615850e-47 |
| Msa0173740 | Msa0427200 | 0.832337 | 1.001604e-55 | -8.615850e-47 |
| Msa0173820 | Msa0427200 | 0.826972 | 2.022847e-54 | -8.615850e-47 |
| Msa0173830 | Msa0427200 | 0.820038 | 8.469550e-53 | -8.615850e-47 |
| Msa0183620 | Msa0427200 | 0.804546 | 2.051247e-49 | -8.615850e-47 |
| Msa0185590 | Msa0427200 | 0.808049 | 3.748759e-50 | -8.615850e-47 |
| Msa0188630 | Msa0427200 | 0.814773 | 1.298668e-51 | -8.615850e-47 |
| Msa0188680 | Msa0427200 | -0.807373 | 5.218600e-50 | -8.615850e-47 |
| Msa0194970 | Msa0427200 | 0.802647 | 5.079873e-49 | -8.615850e-47 |
| Msa0208630 | Msa0427200 | 0.804254 | 2.359650e-49 | -8.615850e-47 |
| Msa0222920 | Msa0427200 | 0.807512 | 4.874163e-50 | -8.615850e-47 |
| Msa0223290 | Msa0427200 | 0.808138 | 3.588891e-50 | -8.615850e-47 |
| Msa0223380 | Msa0427200 | 0.804346 | 2.257509e-49 | -8.615850e-47 |
| Msa0230550 | Msa0427200 | -0.803752 | 3.000062e-49 | -8.615850e-47 |
| Msa0231880 | Msa0427200 | 0.822811 | 1.939831e-53 | -8.615850e-47 |
| Msa0236980 | Msa0427200 | 0.812084 | 5.065343e-51 | -8.615850e-47 |
| Msa0376510 | Msa0427200 | 0.826093 | 3.276935e-54 | -8.615850e-47 |
| Msa0377530 | Msa0427200 | 0.807864 | 4.104467e-50 | -8.615850e-47 |
| Msa0380040 | Msa0427200 | 0.849269 | 3.603590e-60 | -8.615850e-47 |
| Msa0402330 | Msa0427200 | 0.816021 | 6.852983e-52 | -8.615850e-47 |
| Msa0414950 | Msa0427200 | -0.838812 | 2.302457e-57 | -8.615850e-47 |
| Msa0415810 | Msa0427200 | 0.811760 | 5.959510e-51 | -8.615850e-47 |
| Msa0421780 | Msa0427200 | -0.815280 | 1.002295e-51 | -8.615850e-47 |
| Msa0423360 | Msa0427200 | -0.812773 | 3.581060e-51 | -8.615850e-47 |
| Msa0425010 | Msa0427200 | 0.801422 | 9.073554e-49 | -8.615850e-47 |
| Msa0425050 | Msa0427200 | 0.817933 | 2.550582e-52 | -8.615850e-47 |
| Msa0426330 | Msa0427200 | 0.801795 | 7.607421e-49 | -8.615850e-47 |
| Msa0427200 | Msa0429290 | 0.853172 | 2.848107e-61 | -8.615850e-47 |
| Msa0427200 | Msa0431430 | 0.804226 | 2.391543e-49 | -8.615850e-47 |
| Msa0427200 | Msa0436280 | -0.801434 | 9.022487e-49 | -8.615850e-47 |
| Msa0427200 | Msa0442850 | 0.819650 | 1.039241e-52 | -8.615850e-47 |
| Msa0427200 | Msa0460930 | 0.837601 | 4.722010e-57 | -8.615850e-47 |
| Msa0427200 | Msa0467900 | -0.809543 | 1.796761e-50 | -8.615850e-47 |
| Msa0427200 | Msa0469910 | -0.809361 | 1.965252e-50 | -8.615850e-47 |
| Msa0427200 | Msa0469970 | 0.809543 | 1.796202e-50 | -8.615850e-47 |
| Msa0427200 | Msa0473240 | 0.813675 | 2.269509e-51 | -8.615850e-47 |
| Msa0427200 | Msa0475580 | 0.856744 | 2.615420e-62 | -8.615850e-47 |
| Msa0427200 | Msa0480320 | 0.843765 | 1.145780e-58 | -8.615850e-47 |
| Msa0427200 | Msa0487910 | 0.829491 | 4.998369e-55 | -8.615850e-47 |
| Msa0427200 | Msa0490350 | 0.824325 | 8.580603e-54 | -8.615850e-47 |
| Msa0427200 | Msa0506890 | 0.801176 | 1.018525e-48 | -8.615850e-47 |
| Msa0427200 | Msa0508200 | 0.827471 | 1.536017e-54 | -8.615850e-47 |
| Msa0427200 | Msa0509390 | 0.807612 | 4.641576e-50 | -8.615850e-47 |
| Msa0427200 | Msa0516320 | 0.805300 | 1.427111e-49 | -8.615850e-47 |
| Msa0427200 | Msa0517490 | 0.809679 | 1.679625e-50 | -8.615850e-47 |
| Msa0427200 | Msa0519220 | 0.838574 | 2.651791e-57 | -8.615850e-47 |
| Msa0427200 | Msa0521880 | 0.812354 | 4.421789e-51 | -8.615850e-47 |
| Msa0427200 | Msa0526710 | 0.820588 | 6.335923e-53 | -8.615850e-47 |
| Msa0427200 | Msa0526890 | 0.826462 | 2.677903e-54 | -8.615850e-47 |
| Msa0427200 | Msa0532330 | 0.804534 | 2.062888e-49 | -8.615850e-47 |
| Msa0427200 | Msa0535030 | 0.851567 | 8.161339e-61 | -8.615850e-47 |
| Msa0427200 | Msa0535060 | 0.850424 | 1.713458e-60 | -8.615850e-47 |
| Msa0427200 | Msa0542160 | 0.822311 | 2.535866e-53 | -8.615850e-47 |
| Msa0427200 | Msa0546380 | 0.807259 | 5.516784e-50 | -8.615850e-47 |
| Msa0427200 | Msa0547360 | 0.805688 | 1.182770e-49 | -8.615850e-47 |
| Msa0427200 | Msa0553220 | -0.821121 | 4.776600e-53 | -8.615850e-47 |
| Msa0427200 | Msa0577940 | -0.813216 | 2.863927e-51 | -8.615850e-47 |
| Msa0427200 | Msa0591060 | 0.823830 | 1.121151e-53 | -8.615850e-47 |
| Msa0427200 | Msa0591770 | 0.860804 | 1.599536e-63 | -8.615850e-47 |
| Msa0427200 | Msa0607200 | 0.824022 | 1.010878e-53 | -8.615850e-47 |
| Msa0427200 | Msa0618010 | 0.820995 | 5.107070e-53 | -8.615850e-47 |
| Msa0427200 | Msa0619070 | 0.806606 | 7.581263e-50 | -8.615850e-47 |
| Msa0427200 | Msa0620810 | 0.815512 | 8.899429e-52 | -8.615850e-47 |
| Msa0427200 | Msa0624730 | 0.802386 | 5.750773e-49 | -8.615850e-47 |
| Msa0427200 | Msa0625530 | -0.822234 | 2.642339e-53 | -8.615850e-47 |
| Msa0427200 | Msa0638280 | 0.827240 | 1.744988e-54 | -8.615850e-47 |
| Msa0427200 | Msa0638320 | 0.827342 | 1.649659e-54 | -8.615850e-47 |
| Msa0427200 | Msa0642650 | 0.800908 | 1.155958e-48 | -8.615850e-47 |
| Msa0427200 | Msa0654760 | -0.807975 | 3.886400e-50 | -8.615850e-47 |
| Msa0427200 | Msa0661190 | -0.803139 | 4.020199e-49 | -8.615850e-47 |
| Msa0427200 | Msa0669850 | 0.862107 | 6.405883e-64 | -8.615850e-47 |
| Msa0427200 | Msa0677270 | 0.830916 | 2.242999e-55 | -8.615850e-47 |
| Msa0427200 | Msa0680240 | 0.819587 | 1.073710e-52 | -8.615850e-47 |
| Msa0427200 | Msa0682780 | 0.808823 | 2.563423e-50 | -8.615850e-47 |
| Msa0427200 | Msa0703230 | 0.802493 | 5.466433e-49 | -8.615850e-47 |
| Msa0427200 | Msa0703590 | 0.804192 | 2.430843e-49 | -8.615850e-47 |
| Msa0427200 | Msa0709190 | 0.806346 | 8.599817e-50 | -8.615850e-47 |
| Msa0427200 | Msa0743260 | 0.847854 | 8.886493e-60 | -8.615850e-47 |
| Msa0427200 | Msa0789570 | 0.842223 | 2.947780e-58 | -8.615850e-47 |
| Msa0427200 | Msa0790390 | -0.804511 | 2.085649e-49 | -8.615850e-47 |
| Msa0427200 | Msa0791820 | 0.802914 | 4.475647e-49 | -8.615850e-47 |
| Msa0427200 | Msa0813720 | 0.820343 | 7.212342e-53 | -8.615850e-47 |
| Msa0427200 | Msa0831870 | 0.824572 | 7.507120e-54 | -8.615850e-47 |
| Msa0427200 | Msa0850960 | 0.812977 | 3.231090e-51 | -8.615850e-47 |
| Msa0427200 | Msa0866120 | 0.808174 | 3.525821e-50 | -8.615850e-47 |
| Msa0427200 | Msa0867050 | -0.824795 | 6.651887e-54 | -8.615850e-47 |
| Msa0427200 | Msa0874500 | 0.835366 | 1.750071e-56 | -8.615850e-47 |
| Msa0427200 | Msa0876200 | 0.802326 | 5.917132e-49 | -8.615850e-47 |
| Msa0427200 | Msa0890250 | 0.820499 | 6.642546e-53 | -8.615850e-47 |
| Msa0427200 | Msa0907700 | 0.821333 | 4.269980e-53 | -8.615850e-47 |
| Msa0427200 | Msa0910400 | 0.803188 | 3.926795e-49 | -8.615850e-47 |
| Msa0427200 | Msa0925160 | 0.800952 | 1.131841e-48 | -8.615850e-47 |
| Msa0427200 | Msa0937670 | 0.804443 | 2.154680e-49 | -8.615850e-47 |
| Msa0427200 | Msa0976250 | 0.802369 | 5.795675e-49 | -8.615850e-47 |
| Msa0427200 | Msa1000940 | 0.810442 | 1.150454e-50 | -8.615850e-47 |
| Msa0427200 | Msa1015060 | 0.816410 | 5.608986e-52 | -8.615850e-47 |
| Msa0427200 | Msa1026760 | 0.812237 | 4.691219e-51 | -8.615850e-47 |
| Msa0427200 | Msa1026790 | 0.815145 | 1.074179e-51 | -8.615850e-47 |
| Msa0427200 | Msa1040830 | 0.805247 | 1.463987e-49 | -8.615850e-47 |
| Msa0427200 | Msa1040890 | 0.826074 | 3.312292e-54 | -8.615850e-47 |
| Msa0427200 | Msa1044340 | 0.821393 | 4.135642e-53 | -8.615850e-47 |
| Msa0427200 | Msa1049410 | 0.801542 | 8.572487e-49 | -8.615850e-47 |
| Msa0427200 | Msa1056640 | 0.807353 | 5.268573e-50 | -8.615850e-47 |
| Msa0427200 | Msa1072460 | -0.856291 | 3.552595e-62 | -8.615850e-47 |
| Msa0427200 | Msa1082700 | 0.847248 | 1.304265e-59 | -8.615850e-47 |
| Msa0427200 | Msa1083210 | 0.844045 | 9.640464e-59 | -8.615850e-47 |
| Msa0427200 | Msa1092820 | 0.805149 | 1.534519e-49 | -8.615850e-47 |
| Msa0427200 | Msa1127830 | 0.853921 | 1.735659e-61 | -8.615850e-47 |
| Msa0427200 | Msa1127890 | 0.804589 | 2.008696e-49 | -8.615850e-47 |
| Msa0427200 | Msa1130210 | -0.808289 | 3.332395e-50 | -8.615850e-47 |
| Msa0427200 | Msa1132520 | 0.804085 | 2.558005e-49 | -8.615850e-47 |
| Msa0427200 | Msa1171690 | 0.822229 | 2.648549e-53 | -8.615850e-47 |
| Msa0427200 | Msa1174010 | 0.802865 | 4.580100e-49 | -8.615850e-47 |
| Msa0427200 | Msa1181550 | 0.818490 | 1.907788e-52 | -8.615850e-47 |
| Msa0427200 | Msa1193950 | -0.815194 | 1.047393e-51 | -8.615850e-47 |
| Msa0427200 | Msa1199560 | 0.815472 | 9.086993e-52 | -8.615850e-47 |
| Msa0427200 | Msa1217860 | 0.813023 | 3.157732e-51 | -8.615850e-47 |
| Msa0427200 | Msa1224670 | 0.807822 | 4.189335e-50 | -8.615850e-47 |
| Msa0427200 | Msa1237030 | 0.817874 | 2.629606e-52 | -8.615850e-47 |
| Msa0427200 | Msa1253930 | -0.803259 | 3.796255e-49 | -8.615850e-47 |
| Msa0427200 | Msa1269300 | 0.803046 | 4.202657e-49 | -8.615850e-47 |
| Msa0427200 | Msa1280130 | 0.828284 | 9.790370e-55 | -8.615850e-47 |
| Msa0427200 | Msa1291350 | 0.802506 | 5.433150e-49 | -8.615850e-47 |
| Msa0427200 | Msa1307660 | -0.804457 | 2.140585e-49 | -8.615850e-47 |
| Msa0427200 | Msa1316830 | 0.800162 | 1.640263e-48 | -8.615850e-47 |
| Msa0427200 | Msa1323190 | 0.846823 | 1.705192e-59 | -8.615850e-47 |
| Msa0427200 | Msa1328700 | 0.801238 | 9.892318e-49 | -8.615850e-47 |
| Msa0427200 | Msa1362880 | 0.806799 | 6.901649e-50 | -8.615850e-47 |
| Msa0427200 | Msa1369530 | 0.811835 | 5.740073e-51 | -8.615850e-47 |
| Msa0427200 | Msa1390310 | 0.804772 | 1.840074e-49 | -8.615850e-47 |
| Msa0427200 | Msa1395230 | -0.822008 | 2.981290e-53 | -8.615850e-47 |
| Msa0427200 | Msa1395570 | 0.801873 | 7.333188e-49 | -8.615850e-47 |
| Msa0427200 | Msa1403580 | -0.820623 | 6.218858e-53 | -8.615850e-47 |
| Msa0427200 | Msa1403930 | -0.859309 | 4.520374e-63 | -8.615850e-47 |
| Msa0427200 | Msa1410430 | -0.822208 | 2.678134e-53 | -8.615850e-47 |
| Msa0427200 | Msa1439960 | 0.816400 | 5.638185e-52 | -8.615850e-47 |
| Msa0427200 | Msa1443290 | -0.806893 | 6.594092e-50 | -8.615850e-47 |
| Msa0427200 | Msa1464830 | 0.800130 | 1.664620e-48 | -8.615850e-47 |
| Msa0242680 | Msa0427200 | 0.842273 | 2.860095e-58 | -8.615850e-47 |
| Msa0244270 | Msa0427200 | 0.801894 | 7.260498e-49 | -8.615850e-47 |
| Msa0260210 | Msa0427200 | 0.815761 | 7.832536e-52 | -8.615850e-47 |
| Msa0264350 | Msa0427200 | 0.800888 | 1.166482e-48 | -8.615850e-47 |
| Msa0264570 | Msa0427200 | 0.803110 | 4.076055e-49 | -8.615850e-47 |
| Msa0267760 | Msa0427200 | 0.818752 | 1.663823e-52 | -8.615850e-47 |
| Msa0270220 | Msa0427200 | -0.815662 | 8.240155e-52 | -8.615850e-47 |
| Msa0271140 | Msa0427200 | 0.800627 | 1.318902e-48 | -8.615850e-47 |
| Msa0275030 | Msa0427200 | 0.803092 | 4.110602e-49 | -8.615850e-47 |
| Msa0279790 | Msa0427200 | 0.803399 | 3.551274e-49 | -8.615850e-47 |
| Msa0280900 | Msa0427200 | 0.812415 | 4.287817e-51 | -8.615850e-47 |
| Msa0288240 | Msa0427200 | 0.834565 | 2.785071e-56 | -8.615850e-47 |
| Msa0288330 | Msa0427200 | 0.827343 | 1.649074e-54 | -8.615850e-47 |
| Msa0296760 | Msa0427200 | 0.835506 | 1.613153e-56 | -8.615850e-47 |
| Msa0304290 | Msa0427200 | 0.818684 | 1.724032e-52 | -8.615850e-47 |
| Msa0304330 | Msa0427200 | 0.818007 | 2.453115e-52 | -8.615850e-47 |
| Msa0307830 | Msa0427200 | -0.806885 | 6.618396e-50 | -8.615850e-47 |
| Msa0315240 | Msa0427200 | 0.822805 | 1.945998e-53 | -8.615850e-47 |
| Msa0320100 | Msa0427200 | 0.837838 | 4.103325e-57 | -8.615850e-47 |
| Msa0324550 | Msa0427200 | 0.814611 | 1.410401e-51 | -8.615850e-47 |
| Msa0326670 | Msa0427200 | 0.840297 | 9.466960e-58 | -8.615850e-47 |
| Msa0328210 | Msa0427200 | 0.812869 | 3.411880e-51 | -8.615850e-47 |
| Msa0333720 | Msa0427200 | -0.825418 | 4.738569e-54 | -8.615850e-47 |
| Msa0344830 | Msa0427200 | 0.806878 | 6.641563e-50 | -8.615850e-47 |
| Msa0347360 | Msa0427200 | 0.813844 | 2.083764e-51 | -8.615850e-47 |
| Msa0355270 | Msa0427200 | 0.816821 | 4.538147e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427200 | MtrunA17_Chr3g0129611 | 94.891 | 274 | 13 | 1 | 1 | 274 | 1 | 273 | 0.0 | 510 |
| Msa0427200 | MtrunA17_Chr1g0175401 | 36.782 | 261 | 129 | 9 | 23 | 272 | 21 | 256 | 1.67e-34 | 125 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0427200 | AT2G18465.1 | 34.307 | 274 | 150 | 7 | 9 | 272 | 15 | 268 | 7.28e-36 | 129 |
| Msa0427200 | AT2G42080.1 | 35.233 | 193 | 101 | 5 | 93 | 272 | 80 | 261 | 6.01e-22 | 92.4 |
| Msa0427200 | AT3G58020.1 | 29.389 | 262 | 141 | 9 | 24 | 272 | 22 | 252 | 1.19e-19 | 86.3 |
| Msa0427200 | AT2G42065.1 | 55.556 | 63 | 28 | 0 | 210 | 272 | 146 | 208 | 8.33e-17 | 77.4 |
Find 80 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGACTTTGGTTGACCTTTAT+TGG | 0.114938 | 3_2:-77910774 | None:intergenic |
| TTAACATCTTCTATCTTTAA+TGG | 0.140181 | 3_2:-77911729 | None:intergenic |
| AACATTGATTCATAGGAAAT+TGG | 0.186876 | 3_2:+77908576 | Msa0427200:five_prime_UTR |
| TTATACGAGGATGTGGTTTA+AGG | 0.242372 | 3_2:-77908535 | None:intergenic |
| TTCGTTTATCTGCTTTAAAA+TGG | 0.289913 | 3_2:+77911875 | Msa0427200:CDS |
| AGTTCTGATAGAACTATTCT+TGG | 0.308087 | 3_2:+77911690 | Msa0427200:CDS |
| TCCTTCGAACATTGATTCAT+AGG | 0.341780 | 3_2:+77908569 | Msa0427200:five_prime_UTR |
| ATCTGTTCAGGTTGGCCATC+AGG | 0.370634 | 3_2:-77911471 | None:intergenic |
| AGGACAGCAGCAACCATCTA+AGG | 0.372564 | 3_2:+77908993 | Msa0427200:CDS |
| GAAGGGCCTTGATGCTTATC+AGG | 0.372630 | 3_2:-77911901 | None:intergenic |
| AATTATCTGCTCCCATTGAA+TGG | 0.384691 | 3_2:+77912568 | Msa0427200:three_prime_UTR |
| AAAACAAATTGGAAGCTTGA+TGG | 0.390056 | 3_2:+77910722 | Msa0427200:CDS |
| CAGATATTTCACGCAACATT+TGG | 0.394443 | 3_2:+77911489 | Msa0427200:CDS |
| ATCAATTTCAGGACCACATC+AGG | 0.398511 | 3_2:+77910012 | Msa0427200:intron |
| TCAAATAGCTATTCCAATAA+AGG | 0.398744 | 3_2:+77910761 | Msa0427200:CDS |
| GCTTCTATTTATGTAACGTT+AGG | 0.401728 | 3_2:+77912471 | Msa0427200:three_prime_UTR |
| CTCCTTGTTCCTGTCACAAA+TGG | 0.413108 | 3_2:+77908717 | Msa0427200:CDS |
| GTTAGGTGTTTACTCTTAAC+CGG | 0.414059 | 3_2:+77912488 | Msa0427200:three_prime_UTR |
| CAATGCTCTCTCCCCGGCTT+AGG | 0.416556 | 3_2:+77912380 | Msa0427200:CDS |
| ACATCTTCAGACTACTCTTC+CGG | 0.417851 | 3_2:-77912507 | None:intergenic |
| ATTCTTGGTTTGCCACCAAC+AGG | 0.426520 | 3_2:+77911705 | Msa0427200:CDS |
| CCAAACCGTTGACCAGACTT+TGG | 0.435769 | 3_2:-77910788 | None:intergenic |
| ATTCCACATACGGGTTTGAA+TGG | 0.437007 | 3_2:+77911565 | Msa0427200:CDS |
| GTTGCGTGAAATATCTGTTC+AGG | 0.439498 | 3_2:-77911483 | None:intergenic |
| AATGATATAATCCCATTCAA+TGG | 0.451778 | 3_2:-77912580 | None:intergenic |
| ATTATCTGCTCCCATTGAAT+GGG | 0.455376 | 3_2:+77912569 | Msa0427200:three_prime_UTR |
| CCAAAGTCTGGTCAACGGTT+TGG | 0.460831 | 3_2:+77910788 | Msa0427200:CDS |
| TGCTCTCTCCCCGGCTTAGG+AGG | 0.465133 | 3_2:+77912383 | Msa0427200:exon |
| AGACAACCTCGGCGTGGTTG+TGG | 0.471757 | 3_2:+77908481 | Msa0427200:five_prime_UTR |
| AATAAAGGTCAACCAAAGTC+TGG | 0.476301 | 3_2:+77910776 | Msa0427200:CDS |
| ATCTTTAATGGACCTGTTGG+TGG | 0.481220 | 3_2:-77911717 | None:intergenic |
| TCTTCTAAACATTCCACATA+CGG | 0.487383 | 3_2:+77911555 | Msa0427200:CDS |
| ATGATATAATCCCATTCAAT+GGG | 0.489549 | 3_2:-77912579 | None:intergenic |
| TCTATCTTTAATGGACCTGT+TGG | 0.490356 | 3_2:-77911720 | None:intergenic |
| CGGCTTAGGAGGCAGTAGTA+TGG | 0.490968 | 3_2:+77912394 | Msa0427200:exon |
| TTGAGGATCCACCGCTGTAA+AGG | 0.499500 | 3_2:-77910085 | None:intergenic |
| GTTACTATTCCATTTGTGAC+AGG | 0.505685 | 3_2:-77908726 | None:intergenic |
| ATACTACTGCCTCCTAAGCC+GGG | 0.505750 | 3_2:-77912392 | None:intergenic |
| CATACTACTGCCTCCTAAGC+CGG | 0.508905 | 3_2:-77912393 | None:intergenic |
| CTTCTAAACATTCCACATAC+GGG | 0.525227 | 3_2:+77911556 | Msa0427200:CDS |
| CACATACGGGTTTGAATGGA+GGG | 0.529054 | 3_2:+77911569 | Msa0427200:CDS |
| CCACATACGGGTTTGAATGG+AGG | 0.542746 | 3_2:+77911568 | Msa0427200:CDS |
| TCCTATGAATCAATGTTCGA+AGG | 0.543452 | 3_2:-77908570 | None:intergenic |
| AAAAGCAGAGAAATGAGAAA+CGG | 0.544667 | 3_2:-77908687 | None:intergenic |
| AAGTCTGGTCAACGGTTTGG+TGG | 0.546247 | 3_2:+77910791 | Msa0427200:CDS |
| CCTCCATTCAAACCCGTATG+TGG | 0.548643 | 3_2:-77911568 | None:intergenic |
| AAACATCTCCTTTACAGCGG+TGG | 0.554502 | 3_2:+77910077 | Msa0427200:CDS |
| AAGATGCTTATACGAGGATG+TGG | 0.555346 | 3_2:-77908542 | None:intergenic |
| TATTTAAAACTAACCTGCGA+AGG | 0.568908 | 3_2:-77911919 | None:intergenic |
| AGGATGTGGTTTAAGGAGAA+CGG | 0.572052 | 3_2:-77908528 | None:intergenic |
| TCCTTGCAGGATACAAGAAA+AGG | 0.573233 | 3_2:+77908973 | Msa0427200:intron |
| ATTCGTATTGCAGAAGGACC+AGG | 0.574419 | 3_2:-77911526 | None:intergenic |
| ATAAGACAAACACAAACAAG+TGG | 0.578144 | 3_2:+77911601 | Msa0427200:CDS |
| GCAGAGAAATGAGAAACGGA+TGG | 0.581309 | 3_2:-77908683 | None:intergenic |
| TACCTCAAATGAAAATCTTG+AGG | 0.581905 | 3_2:-77910102 | None:intergenic |
| TGGTCCTTCTGCAATACGAA+TGG | 0.587718 | 3_2:+77911528 | Msa0427200:CDS |
| TAAGCATCAAGGCCCTTCGC+AGG | 0.589438 | 3_2:+77911906 | Msa0427200:CDS |
| AAGCTTGATGGAAACTCTGA+TGG | 0.593884 | 3_2:+77910734 | Msa0427200:CDS |
| AGATCCATTCGTATTGCAGA+AGG | 0.598332 | 3_2:-77911532 | None:intergenic |
| TTCCATTTGTGACAGGAACA+AGG | 0.598973 | 3_2:-77908719 | None:intergenic |
| ATTATGCAATGCTCTCTCCC+CGG | 0.600724 | 3_2:+77912374 | Msa0427200:CDS |
| GACGAGTAACAAACCTGATG+TGG | 0.602547 | 3_2:-77910025 | None:intergenic |
| ATTTAAAACTAACCTGCGAA+GGG | 0.603975 | 3_2:-77911918 | None:intergenic |
| TGGCATCCTGATAAGCATCA+AGG | 0.604345 | 3_2:+77911895 | Msa0427200:CDS |
| CGTGAAATATCTGTTCAGGT+TGG | 0.606104 | 3_2:-77911479 | None:intergenic |
| TTGGTAGCCGAAGTTATACC+TGG | 0.610193 | 3_2:+77911508 | Msa0427200:CDS |
| GCAAGTGATGATGAGGATGA+TGG | 0.616011 | 3_2:+77911630 | Msa0427200:CDS |
| TTTGTGACAGGAACAAGGAG+TGG | 0.629036 | 3_2:-77908714 | None:intergenic |
| GATGATGATTCATACCGTGT+AGG | 0.631306 | 3_2:+77911663 | Msa0427200:CDS |
| GTCAACCAAAGTCTGGTCAA+CGG | 0.640459 | 3_2:+77910783 | Msa0427200:CDS |
| AGAAGGACCAGGTATAACTT+CGG | 0.649117 | 3_2:-77911515 | None:intergenic |
| GAAAAGTGCAAGTGATGATG+AGG | 0.655027 | 3_2:+77911623 | Msa0427200:CDS |
| TATCAGAACTTGATCCTACA+CGG | 0.668377 | 3_2:-77911677 | None:intergenic |
| TACTACTGCCTCCTAAGCCG+GGG | 0.672177 | 3_2:-77912391 | None:intergenic |
| ACCAGGAGAGAAGACAACCT+CGG | 0.694331 | 3_2:+77908470 | None:intergenic |
| CTTAAACATCTCCTTTACAG+CGG | 0.697909 | 3_2:+77910074 | Msa0427200:CDS |
| GAGAGAAGACAACCTCGGCG+TGG | 0.698071 | 3_2:+77908475 | None:intergenic |
| CAGATATGCAAATAGCACGA+TGG | 0.698817 | 3_2:+77908627 | Msa0427200:exon |
| TAAACACCACAACCACGCCG+AGG | 0.721462 | 3_2:-77908487 | None:intergenic |
| GAATCTAAGATGCTTATACG+AGG | 0.753207 | 3_2:-77908548 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTATTTCTATTATATTAATT+AGG | - | chr3_2:77909720-77909739 | None:intergenic | 10.0% |
| !! | ATAAAAACAAAAAAAGAAAT+TGG | + | chr3_2:77911974-77911993 | Msa0427200:intron | 10.0% |
| !! | AAAAAAAAAAAAAAACTCAC+GGG | - | chr3_2:77908752-77908771 | None:intergenic | 15.0% |
| !! | CAAAAAAAAAAAAAAACTCA+CGG | - | chr3_2:77908753-77908772 | None:intergenic | 15.0% |
| !!! | AATTAATGAAATGTTGTTTT+TGG | + | chr3_2:77908950-77908969 | Msa0427200:intron | 15.0% |
| !! | CAATAAACAATGAATTATAT+CGG | - | chr3_2:77909910-77909929 | None:intergenic | 15.0% |
| !! | TGCAAAAATATAATCTAAAA+GGG | - | chr3_2:77910279-77910298 | None:intergenic | 15.0% |
| !! | ATAAAATATAACACTGTATA+AGG | - | chr3_2:77910635-77910654 | None:intergenic | 15.0% |
| !!! | GTTTTTATCATTTATTTAAG+AGG | - | chr3_2:77911962-77911981 | None:intergenic | 15.0% |
| !!! | TTTTTAAATATTAGCTATAG+CGG | - | chr3_2:77912172-77912191 | None:intergenic | 15.0% |
| !! | TAGCTAATATTTAAAAACAT+TGG | + | chr3_2:77912175-77912194 | Msa0427200:intron | 15.0% |
| !! | AAAAAAAAAAAAAACTCACG+GGG | - | chr3_2:77908751-77908770 | None:intergenic | 20.0% |
| !! | AAATAAAGCTAATTGCTATA+GGG | - | chr3_2:77909027-77909046 | None:intergenic | 20.0% |
| !! | AAAATAAAGCTAATTGCTAT+AGG | - | chr3_2:77909028-77909047 | None:intergenic | 20.0% |
| !! | GAATTGCATCAATTTATAAT+TGG | + | chr3_2:77909514-77909533 | Msa0427200:intron | 20.0% |
| !! | TAATACATACAAAACTAAGT+GGG | - | chr3_2:77909766-77909785 | None:intergenic | 20.0% |
| !!! | TAGTTTTGTATGTATTAGAT+TGG | + | chr3_2:77909769-77909788 | Msa0427200:intron | 20.0% |
| !! | AAGAACAATATAAATAACTG+TGG | - | chr3_2:77909976-77909995 | None:intergenic | 20.0% |
| !! | GCAAAAATATAATCTAAAAG+GGG | - | chr3_2:77910278-77910297 | None:intergenic | 20.0% |
| !! | GTGCAAAAATATAATCTAAA+AGG | - | chr3_2:77910280-77910299 | None:intergenic | 20.0% |
| !! | TTAACATCTTCTATCTTTAA+TGG | - | chr3_2:77911732-77911751 | None:intergenic | 20.0% |
| !! | AAACAAAAAAAGAAATTGGA+AGG | + | chr3_2:77911978-77911997 | Msa0427200:intron | 20.0% |
| !! | TTATGAATCACATATAATAG+TGG | + | chr3_2:77912023-77912042 | Msa0427200:intron | 20.0% |
| !! | ATACATATAACCAAAAAAGA+GGG | - | chr3_2:77912247-77912266 | None:intergenic | 20.0% |
| !!! | AACATTGATTCATAGGAAAT+TGG | + | chr3_2:77908576-77908595 | Msa0427200:five_prime_UTR | 25.0% |
| ! | GTTTATTGTTTATGCAACTT+TGG | + | chr3_2:77908780-77908799 | Msa0427200:intron | 25.0% |
| ! | AATAAAGCTAATTGCTATAG+GGG | - | chr3_2:77909026-77909045 | None:intergenic | 25.0% |
| !!! | CAATTAGCTTTATTTTCTGT+TGG | + | chr3_2:77909032-77909051 | Msa0427200:intron | 25.0% |
| !!! | TCTGATTTGTTTATGTATTG+TGG | + | chr3_2:77909071-77909090 | Msa0427200:intron | 25.0% |
| ! | CACAATACATAATTTAGACT+AGG | - | chr3_2:77909168-77909187 | None:intergenic | 25.0% |
| ! | CTAGTCTAAATTATGTATTG+TGG | + | chr3_2:77909166-77909185 | Msa0427200:intron | 25.0% |
| ! | ACAAAACATATTCTCCAATT+CGG | - | chr3_2:77909288-77909307 | None:intergenic | 25.0% |
| ! | GAACAATTGAATCTATACAT+TGG | - | chr3_2:77909312-77909331 | None:intergenic | 25.0% |
| !! | CAAAGTGCATATATACTTTT+CGG | - | chr3_2:77909379-77909398 | None:intergenic | 25.0% |
| ! | TCATTCTTTAATATTGTGAC+CGG | + | chr3_2:77909407-77909426 | Msa0427200:intron | 25.0% |
| ! | TATAATTGGATAGAACAATC+TGG | + | chr3_2:77909528-77909547 | Msa0427200:intron | 25.0% |
| ! | ATAATTGGATAGAACAATCT+GGG | + | chr3_2:77909529-77909548 | Msa0427200:intron | 25.0% |
| ! | CCTTACATAAATAGTTTAAC+AGG | - | chr3_2:77909623-77909642 | None:intergenic | 25.0% |
| ! | CCTGTTAAACTATTTATGTA+AGG | + | chr3_2:77909620-77909639 | Msa0427200:intron | 25.0% |
| ! | CTAATACATACAAAACTAAG+TGG | - | chr3_2:77909767-77909786 | None:intergenic | 25.0% |
| ! | CAATGATTGCTTAATTTCTA+TGG | + | chr3_2:77910193-77910212 | Msa0427200:intron | 25.0% |
| ! | AGTTTGTGAATTAATTAGCA+TGG | + | chr3_2:77910233-77910252 | Msa0427200:intron | 25.0% |
| !!! | TATTTTTGCACTATCTAGAT+AGG | + | chr3_2:77910289-77910308 | Msa0427200:intron | 25.0% |
| ! | CATTCGTTATCTATGAATAT+GGG | - | chr3_2:77910342-77910361 | None:intergenic | 25.0% |
| ! | ACATTCGTTATCTATGAATA+TGG | - | chr3_2:77910343-77910362 | None:intergenic | 25.0% |
| ! | TATTCATAGATAACGAATGT+AGG | + | chr3_2:77910343-77910362 | Msa0427200:intron | 25.0% |
| !!! | AAATGCAACTTGTCTTTTTT+AGG | + | chr3_2:77910579-77910598 | Msa0427200:intron | 25.0% |
| !!! | AATTTGTTTTTTTGTCCTAG+GGG | - | chr3_2:77910712-77910731 | None:intergenic | 25.0% |
| !!! | CAATTTGTTTTTTTGTCCTA+GGG | - | chr3_2:77910713-77910732 | None:intergenic | 25.0% |
| ! | TCAAATAGCTATTCCAATAA+AGG | + | chr3_2:77910761-77910780 | Msa0427200:CDS | 25.0% |
| !!! | TCACGTTTATTTTTCTTTTG+GGG | - | chr3_2:77910821-77910840 | None:intergenic | 25.0% |
| !!! | CTCACGTTTATTTTTCTTTT+GGG | - | chr3_2:77910822-77910841 | None:intergenic | 25.0% |
| !!! | ACTCACGTTTATTTTTCTTT+TGG | - | chr3_2:77910823-77910842 | None:intergenic | 25.0% |
| !! | AAAAGAAAGTGTGAATTGAA+AGG | - | chr3_2:77910847-77910866 | None:intergenic | 25.0% |
| ! | TTGGTTAAAATTTCCATTTC+TGG | + | chr3_2:77910905-77910924 | Msa0427200:intron | 25.0% |
| ! | GTAATGTTTCAAAATCTCAT+TGG | - | chr3_2:77910983-77911002 | None:intergenic | 25.0% |
| ! | TTCCTTGTTAATTCATATTC+TGG | + | chr3_2:77911027-77911046 | Msa0427200:intron | 25.0% |
| ! | TTCCAGAATATGAATTAACA+AGG | - | chr3_2:77911032-77911051 | None:intergenic | 25.0% |
| ! | TAAAATTGCGTAAGTGATTT+AGG | + | chr3_2:77911749-77911768 | Msa0427200:intron | 25.0% |
| ! | GTATAACATCAAATCTCAAT+TGG | - | chr3_2:77911802-77911821 | None:intergenic | 25.0% |
| !!! | TTCGTTTATCTGCTTTAAAA+TGG | + | chr3_2:77911875-77911894 | Msa0427200:CDS | 25.0% |
| ! | CATACATATAACCAAAAAAG+AGG | - | chr3_2:77912248-77912267 | None:intergenic | 25.0% |
| !! | TATGGCTTTTCAAAATCAAT+TGG | + | chr3_2:77912412-77912431 | Msa0427200:three_prime_UTR | 25.0% |
| !! | ATGGCTTTTCAAAATCAATT+GGG | + | chr3_2:77912413-77912432 | Msa0427200:three_prime_UTR | 25.0% |
| ! | ATGATATAATCCCATTCAAT+GGG | - | chr3_2:77912582-77912601 | None:intergenic | 25.0% |
| ! | AATGATATAATCCCATTCAA+TGG | - | chr3_2:77912583-77912602 | None:intergenic | 25.0% |
| AAAAGCAGAGAAATGAGAAA+CGG | - | chr3_2:77908690-77908709 | None:intergenic | 30.0% | |
| ATAATTCCAATGCACAAATG+TGG | - | chr3_2:77908821-77908840 | None:intergenic | 30.0% | |
| GAGAACTATGAAAACCAATT+CGG | - | chr3_2:77908858-77908877 | None:intergenic | 30.0% | |
| ATAAAGCTAATTGCTATAGG+GGG | - | chr3_2:77909025-77909044 | None:intergenic | 30.0% | |
| !!! | TTATTTTCTGTTGGTGACAT+AGG | + | chr3_2:77909041-77909060 | Msa0427200:intron | 30.0% |
| GTGTGAATATTCTGAATCAA+AGG | + | chr3_2:77909436-77909455 | Msa0427200:intron | 30.0% | |
| ATGCTGGAAATATCAATTTC+AGG | + | chr3_2:77910001-77910020 | Msa0427200:intron | 30.0% | |
| ! | ATCCTCAAGATTTTCATTTG+AGG | + | chr3_2:77910100-77910119 | Msa0427200:CDS | 30.0% |
| TACCTCAAATGAAAATCTTG+AGG | - | chr3_2:77910105-77910124 | None:intergenic | 30.0% | |
| ATAAAAAGACAGTTTCCTAG+TGG | - | chr3_2:77910144-77910163 | None:intergenic | 30.0% | |
| ATTTCTATGGATAATGTGTG+TGG | + | chr3_2:77910206-77910225 | Msa0427200:intron | 30.0% | |
| TTTCTATGGATAATGTGTGT+GGG | + | chr3_2:77910207-77910226 | Msa0427200:intron | 30.0% | |
| ATAGATAACGAATGTAGGAT+GGG | + | chr3_2:77910348-77910367 | Msa0427200:intron | 30.0% | |
| !!! | ACTTGTCTTTTTTAGGCATT+TGG | + | chr3_2:77910586-77910605 | Msa0427200:intron | 30.0% |
| ! | ATAACACTGTATAAGGTGTT+AGG | - | chr3_2:77910628-77910647 | None:intergenic | 30.0% |
| !!! | CCAATTTGTTTTTTTGTCCT+AGG | - | chr3_2:77910714-77910733 | None:intergenic | 30.0% |
| CCTAGGACAAAAAAACAAAT+TGG | + | chr3_2:77910711-77910730 | Msa0427200:intron | 30.0% | |
| AAAACAAATTGGAAGCTTGA+TGG | + | chr3_2:77910722-77910741 | Msa0427200:CDS | 30.0% | |
| AACCAATACAGATAAGTGAT+CGG | - | chr3_2:77910891-77910910 | None:intergenic | 30.0% | |
| TGTACAGATAGTAAACTGTA+TGG | - | chr3_2:77911151-77911170 | None:intergenic | 30.0% | |
| !!! | ATGACGTGATTTTAGAATCA+TGG | - | chr3_2:77911266-77911285 | None:intergenic | 30.0% |
| TAAAATCACGTCATTAGTGT+TGG | + | chr3_2:77911272-77911291 | Msa0427200:intron | 30.0% | |
| TCTTCTAAACATTCCACATA+CGG | + | chr3_2:77911555-77911574 | Msa0427200:CDS | 30.0% | |
| ATAAGACAAACACAAACAAG+TGG | + | chr3_2:77911601-77911620 | Msa0427200:CDS | 30.0% | |
| ! | AGTTCTGATAGAACTATTCT+TGG | + | chr3_2:77911690-77911709 | Msa0427200:CDS | 30.0% |
| ! | ATTTAGGTTTCCTCTTGTTT+GGG | + | chr3_2:77911765-77911784 | Msa0427200:intron | 30.0% |
| TAACATCAAATCTCAATTGG+AGG | - | chr3_2:77911799-77911818 | None:intergenic | 30.0% | |
| ATCATACACACATTACAAAC+CGG | + | chr3_2:77911825-77911844 | Msa0427200:intron | 30.0% | |
| ! | ATTTAAAACTAACCTGCGAA+GGG | - | chr3_2:77911921-77911940 | None:intergenic | 30.0% |
| ! | TATTTAAAACTAACCTGCGA+AGG | - | chr3_2:77911922-77911941 | None:intergenic | 30.0% |
| CATTTATTTAAGAGGCAGAT+AGG | - | chr3_2:77911954-77911973 | None:intergenic | 30.0% | |
| GTGATTCATAATTGACAACA+CGG | - | chr3_2:77912014-77912033 | None:intergenic | 30.0% | |
| ! | CATTGGTTACATATGAAACT+AGG | + | chr3_2:77912192-77912211 | Msa0427200:intron | 30.0% |
| ATATAACCAAAAAAGAGGGA+GGG | - | chr3_2:77912243-77912262 | None:intergenic | 30.0% | |
| AGTGAGACATAAGATTAGAA+AGG | - | chr3_2:77912287-77912306 | None:intergenic | 30.0% | |
| ! | TGGCTTTTCAAAATCAATTG+GGG | + | chr3_2:77912414-77912433 | Msa0427200:three_prime_UTR | 30.0% |
| GCTTCTATTTATGTAACGTT+AGG | + | chr3_2:77912471-77912490 | Msa0427200:three_prime_UTR | 30.0% | |
| ! | GTTTAAGGAGAACGGTTTTT+GGG | - | chr3_2:77908523-77908542 | None:intergenic | 35.0% |
| TTATACGAGGATGTGGTTTA+AGG | - | chr3_2:77908538-77908557 | None:intergenic | 35.0% | |
| ! | GAATCTAAGATGCTTATACG+AGG | - | chr3_2:77908551-77908570 | None:intergenic | 35.0% |
| !! | TCCTTCGAACATTGATTCAT+AGG | + | chr3_2:77908569-77908588 | Msa0427200:five_prime_UTR | 35.0% |
| TCCTATGAATCAATGTTCGA+AGG | - | chr3_2:77908573-77908592 | None:intergenic | 35.0% | |
| GTTACTATTCCATTTGTGAC+AGG | - | chr3_2:77908729-77908748 | None:intergenic | 35.0% | |
| GAAAACCAATTCGGTTTCAA+AGG | - | chr3_2:77908849-77908868 | None:intergenic | 35.0% | |
| ACACTTTCTCATATCATAGC+TGG | - | chr3_2:77908927-77908946 | None:intergenic | 35.0% | |
| AGCTATGATATGAGAAAGTG+TGG | + | chr3_2:77908926-77908945 | Msa0427200:intron | 35.0% | |
| AGTTTCCTACATCGATGTAT+TGG | + | chr3_2:77909215-77909234 | Msa0427200:intron | 35.0% | |
| AGAATATTCACACATGCTAC+CGG | - | chr3_2:77909429-77909448 | None:intergenic | 35.0% | |
| AATGCGTATACCAGTATAAG+AGG | - | chr3_2:77909571-77909590 | None:intergenic | 35.0% | |
| CATATATCACCTGAGTTAAG+TGG | + | chr3_2:77909595-77909614 | Msa0427200:intron | 35.0% | |
| TTCAATGCATACCTACTGTA+AGG | - | chr3_2:77909661-77909680 | None:intergenic | 35.0% | |
| ATTTCCCTTTGTAGAGAATG+TGG | + | chr3_2:77909687-77909706 | Msa0427200:intron | 35.0% | |
| TGAACCACATTCTCTACAAA+GGG | - | chr3_2:77909694-77909713 | None:intergenic | 35.0% | |
| TTGAACCACATTCTCTACAA+AGG | - | chr3_2:77909695-77909714 | None:intergenic | 35.0% | |
| TGAGCTTGAAATTTGACCAT+TGG | - | chr3_2:77909803-77909822 | None:intergenic | 35.0% | |
| TATGATCTCCAATCTTCGTT+GGG | + | chr3_2:77909837-77909856 | Msa0427200:intron | 35.0% | |
| !!! | ATTTGTTTTGCATGCAGCTT+AGG | + | chr3_2:77909883-77909902 | Msa0427200:intron | 35.0% |
| ACTGTGGATTTCAAATAAGC+AGG | - | chr3_2:77909960-77909979 | None:intergenic | 35.0% | |
| ATATTGTTCTTCAGTGATGC+TGG | + | chr3_2:77909985-77910004 | Msa0427200:intron | 35.0% | |
| CTTAAACATCTCCTTTACAG+CGG | + | chr3_2:77910074-77910093 | Msa0427200:CDS | 35.0% | |
| CATAGATAACGAATGTAGGA+TGG | + | chr3_2:77910347-77910366 | Msa0427200:intron | 35.0% | |
| ACTAAGAAATACATGCTGAG+TGG | + | chr3_2:77910492-77910511 | Msa0427200:intron | 35.0% | |
| AGACTTTGGTTGACCTTTAT+TGG | - | chr3_2:77910777-77910796 | None:intergenic | 35.0% | |
| AATAAAGGTCAACCAAAGTC+TGG | + | chr3_2:77910776-77910795 | Msa0427200:CDS | 35.0% | |
| CCTCAACTTATAACCAGAAA+TGG | - | chr3_2:77910921-77910940 | None:intergenic | 35.0% | |
| !! | CCATTTCTGGTTATAAGTTG+AGG | + | chr3_2:77910918-77910937 | Msa0427200:intron | 35.0% |
| CCAAAGCTTATATATTTCGC+TGG | - | chr3_2:77911074-77911093 | None:intergenic | 35.0% | |
| CCAGCGAAATATATAAGCTT+TGG | + | chr3_2:77911071-77911090 | Msa0427200:intron | 35.0% | |
| ! | TTCTGATTTTTCCTGTACAG+TGG | - | chr3_2:77911428-77911447 | None:intergenic | 35.0% |
| ! | TTTTGTGAAGAAGAACCTGA+TGG | + | chr3_2:77911456-77911475 | Msa0427200:CDS | 35.0% |
| CAGATATTTCACGCAACATT+TGG | + | chr3_2:77911489-77911508 | Msa0427200:CDS | 35.0% | |
| CTTCTAAACATTCCACATAC+GGG | + | chr3_2:77911556-77911575 | Msa0427200:CDS | 35.0% | |
| TATCAGAACTTGATCCTACA+CGG | - | chr3_2:77911680-77911699 | None:intergenic | 35.0% | |
| ! | TCTATCTTTAATGGACCTGT+TGG | - | chr3_2:77911723-77911742 | None:intergenic | 35.0% |
| ! | GATTTAGGTTTCCTCTTGTT+TGG | + | chr3_2:77911764-77911783 | Msa0427200:intron | 35.0% |
| CATATAACCAAAAAAGAGGG+AGG | - | chr3_2:77912244-77912263 | None:intergenic | 35.0% | |
| GTTAGGTGTTTACTCTTAAC+CGG | + | chr3_2:77912488-77912507 | Msa0427200:three_prime_UTR | 35.0% | |
| AATTATCTGCTCCCATTGAA+TGG | + | chr3_2:77912568-77912587 | Msa0427200:three_prime_UTR | 35.0% | |
| ATTATCTGCTCCCATTGAAT+GGG | + | chr3_2:77912569-77912588 | Msa0427200:three_prime_UTR | 35.0% | |
| ! | GGTTTAAGGAGAACGGTTTT+TGG | - | chr3_2:77908524-77908543 | None:intergenic | 40.0% |
| AGGATGTGGTTTAAGGAGAA+CGG | - | chr3_2:77908531-77908550 | None:intergenic | 40.0% | |
| AAGATGCTTATACGAGGATG+TGG | - | chr3_2:77908545-77908564 | None:intergenic | 40.0% | |
| CAGATATGCAAATAGCACGA+TGG | + | chr3_2:77908627-77908646 | Msa0427200:exon | 40.0% | |
| TTCCATTTGTGACAGGAACA+AGG | - | chr3_2:77908722-77908741 | None:intergenic | 40.0% | |
| GAATTGCCACATTTGTGCAT+TGG | + | chr3_2:77908812-77908831 | Msa0427200:intron | 40.0% | |
| !! | ATTCGCCTTTGAAACCGAAT+TGG | + | chr3_2:77908841-77908860 | Msa0427200:intron | 40.0% |
| !!! | ATGTTGTTTTTGGTCCTTGC+AGG | + | chr3_2:77908960-77908979 | Msa0427200:intron | 40.0% |
| TCCTTGCAGGATACAAGAAA+AGG | + | chr3_2:77908973-77908992 | Msa0427200:intron | 40.0% | |
| ! | TCCTTTTCTTGTATCCTGCA+AGG | - | chr3_2:77908977-77908996 | None:intergenic | 40.0% |
| TAACAGGTTCCACTTAACTC+AGG | - | chr3_2:77909607-77909626 | None:intergenic | 40.0% | |
| ! | GATTTTCTGCACCTTACAGT+AGG | + | chr3_2:77909647-77909666 | Msa0427200:intron | 40.0% |
| TAGATTGGATTGCACACCAA+TGG | + | chr3_2:77909784-77909803 | Msa0427200:intron | 40.0% | |
| CTATGATCTCCAATCTTCGT+TGG | + | chr3_2:77909836-77909855 | Msa0427200:intron | 40.0% | |
| TGCTCTTTATGCAACTCTTG+TGG | + | chr3_2:77909928-77909947 | Msa0427200:intron | 40.0% | |
| GCTCTTTATGCAACTCTTGT+GGG | + | chr3_2:77909929-77909948 | Msa0427200:intron | 40.0% | |
| CTCTTTATGCAACTCTTGTG+GGG | + | chr3_2:77909930-77909949 | Msa0427200:intron | 40.0% | |
| ATCAATTTCAGGACCACATC+AGG | + | chr3_2:77910012-77910031 | Msa0427200:intron | 40.0% | |
| !! | GCTTTCTTCTAGTTTCCACT+AGG | + | chr3_2:77910126-77910145 | Msa0427200:intron | 40.0% |
| AGTATCTGTACGATTGATCG+TGG | - | chr3_2:77910535-77910554 | None:intergenic | 40.0% | |
| TAGTGTTGTACATTTCCCCT+AGG | + | chr3_2:77910694-77910713 | Msa0427200:intron | 40.0% | |
| AAGCTTGATGGAAACTCTGA+TGG | + | chr3_2:77910734-77910753 | Msa0427200:CDS | 40.0% | |
| CTCCGATCACTTATCTGTAT+TGG | + | chr3_2:77910886-77910905 | Msa0427200:intron | 40.0% | |
| GAATTTGTCGCAATAACGAG+GGG | - | chr3_2:77911010-77911029 | None:intergenic | 40.0% | |
| GGAATTTGTCGCAATAACGA+GGG | - | chr3_2:77911011-77911030 | None:intergenic | 40.0% | |
| AGGAATTTGTCGCAATAACG+AGG | - | chr3_2:77911012-77911031 | None:intergenic | 40.0% | |
| AATGAGCAATCAGTGGAACA+AGG | - | chr3_2:77911232-77911251 | None:intergenic | 40.0% | |
| ! | TGTTCCACTGATTGCTCATT+TGG | + | chr3_2:77911232-77911251 | Msa0427200:intron | 40.0% |
| AGAACCAAATGAGCAATCAG+TGG | - | chr3_2:77911239-77911258 | None:intergenic | 40.0% | |
| !! | TGATTGCTCATTTGGTTCTG+CGG | + | chr3_2:77911240-77911259 | Msa0427200:intron | 40.0% |
| AGAGACATTTAGCGTGTGTT+TGG | - | chr3_2:77911382-77911401 | None:intergenic | 40.0% | |
| CGTGAAATATCTGTTCAGGT+TGG | - | chr3_2:77911482-77911501 | None:intergenic | 40.0% | |
| GTTGCGTGAAATATCTGTTC+AGG | - | chr3_2:77911486-77911505 | None:intergenic | 40.0% | |
| AGAAGGACCAGGTATAACTT+CGG | - | chr3_2:77911518-77911537 | None:intergenic | 40.0% | |
| AGATCCATTCGTATTGCAGA+AGG | - | chr3_2:77911535-77911554 | None:intergenic | 40.0% | |
| ATTCCACATACGGGTTTGAA+TGG | + | chr3_2:77911565-77911584 | Msa0427200:CDS | 40.0% | |
| ! | GAAAAGTGCAAGTGATGATG+AGG | + | chr3_2:77911623-77911642 | Msa0427200:CDS | 40.0% |
| GATGATGATTCATACCGTGT+AGG | + | chr3_2:77911663-77911682 | Msa0427200:CDS | 40.0% | |
| ! | ATCTTTAATGGACCTGTTGG+TGG | - | chr3_2:77911720-77911739 | None:intergenic | 40.0% |
| GGACAATAAAGAGCTATCAC+CGG | - | chr3_2:77911847-77911866 | None:intergenic | 40.0% | |
| GCAGATAAACGAAAACTGCA+AGG | - | chr3_2:77911868-77911887 | None:intergenic | 40.0% | |
| ACATCTTCAGACTACTCTTC+CGG | - | chr3_2:77912510-77912529 | None:intergenic | 40.0% | |
| !!! | AACGGTTTTTGGGTGGACTA+AGG | - | chr3_2:77908513-77908532 | None:intergenic | 45.0% |
| !! | TAAGGAGAACGGTTTTTGGG+TGG | - | chr3_2:77908520-77908539 | None:intergenic | 45.0% |
| GCAGAGAAATGAGAAACGGA+TGG | - | chr3_2:77908686-77908705 | None:intergenic | 45.0% | |
| TTTGTGACAGGAACAAGGAG+TGG | - | chr3_2:77908717-77908736 | None:intergenic | 45.0% | |
| CTCCTTGTTCCTGTCACAAA+TGG | + | chr3_2:77908717-77908736 | Msa0427200:CDS | 45.0% | |
| ! | TAGGGGGTACATACCTTAGA+TGG | - | chr3_2:77909009-77909028 | None:intergenic | 45.0% |
| GGCAACCAATACATCGATGT+AGG | - | chr3_2:77909223-77909242 | None:intergenic | 45.0% | |
| GTTGAGGTGCGATGCAAATA+TGG | - | chr3_2:77909244-77909263 | None:intergenic | 45.0% | |
| TCTATGCTTCTAGCAGCGTA+TGG | + | chr3_2:77909330-77909349 | Msa0427200:intron | 45.0% | |
| GACGAGTAACAAACCTGATG+TGG | - | chr3_2:77910028-77910047 | None:intergenic | 45.0% | |
| AAACATCTCCTTTACAGCGG+TGG | + | chr3_2:77910077-77910096 | Msa0427200:CDS | 45.0% | |
| GGGCAATGCTGACAAATACA+TGG | - | chr3_2:77910322-77910341 | None:intergenic | 45.0% | |
| ATCTGTACGATTGATCGTGG+AGG | - | chr3_2:77910532-77910551 | None:intergenic | 45.0% | |
| GTCAACCAAAGTCTGGTCAA+CGG | + | chr3_2:77910783-77910802 | Msa0427200:CDS | 45.0% | |
| TAAGTGATCGGAGTCGAGAA+AGG | - | chr3_2:77910879-77910898 | None:intergenic | 45.0% | |
| ! | CTGATGTGACTTTGGAGAAG+CGG | - | chr3_2:77911340-77911359 | None:intergenic | 45.0% |
| ACTAGACGCTGATGTGACTT+TGG | - | chr3_2:77911348-77911367 | None:intergenic | 45.0% | |
| GACATTTAGCGTGTGTTTGG+TGG | - | chr3_2:77911379-77911398 | None:intergenic | 45.0% | |
| ! | TTGGTAGCCGAAGTTATACC+TGG | + | chr3_2:77911508-77911527 | Msa0427200:CDS | 45.0% |
| ATTCGTATTGCAGAAGGACC+AGG | - | chr3_2:77911529-77911548 | None:intergenic | 45.0% | |
| TGGTCCTTCTGCAATACGAA+TGG | + | chr3_2:77911528-77911547 | Msa0427200:CDS | 45.0% | |
| CACATACGGGTTTGAATGGA+GGG | + | chr3_2:77911569-77911588 | Msa0427200:CDS | 45.0% | |
| ! | GCAAGTGATGATGAGGATGA+TGG | + | chr3_2:77911630-77911649 | Msa0427200:CDS | 45.0% |
| !! | ATTCTTGGTTTGCCACCAAC+AGG | + | chr3_2:77911705-77911724 | Msa0427200:CDS | 45.0% |
| GGATATGTGTCCCAAACAAG+AGG | - | chr3_2:77911778-77911797 | None:intergenic | 45.0% | |
| TGGCATCCTGATAAGCATCA+AGG | + | chr3_2:77911895-77911914 | Msa0427200:CDS | 45.0% | |
| CTTAACCTTTCCGTGATTGC+AGG | + | chr3_2:77912305-77912324 | Msa0427200:intron | 45.0% | |
| ATTATGCAATGCTCTCTCCC+CGG | + | chr3_2:77912374-77912393 | Msa0427200:CDS | 45.0% | |
| !!! | TATTTCTATTATATTAATTA+GGG | - | chr3_2:77909719-77909738 | None:intergenic | 5.0% |
| AGGACAGCAGCAACCATCTA+AGG | + | chr3_2:77908993-77909012 | Msa0427200:CDS | 50.0% | |
| ATCGAGGCTTCACGAAGTTG+AGG | - | chr3_2:77909260-77909279 | None:intergenic | 50.0% | |
| ! | CAGTATAAGAGGCGCACAAC+TGG | - | chr3_2:77909560-77909579 | None:intergenic | 50.0% |
| CAGTTGTGCGCCTCTTATAC+TGG | + | chr3_2:77909558-77909577 | Msa0427200:intron | 50.0% | |
| TCACGAGTCCCAACGAAGAT+TGG | - | chr3_2:77909848-77909867 | None:intergenic | 50.0% | |
| AATCTTCGTTGGGACTCGTG+AGG | + | chr3_2:77909847-77909866 | Msa0427200:intron | 50.0% | |
| GACTCGTGAGGAGTTTGGAT+TGG | + | chr3_2:77909859-77909878 | Msa0427200:intron | 50.0% | |
| TTGAGGATCCACCGCTGTAA+AGG | - | chr3_2:77910088-77910107 | None:intergenic | 50.0% | |
| CCAAACCGTTGACCAGACTT+TGG | - | chr3_2:77910791-77910810 | None:intergenic | 50.0% | |
| CCAAAGTCTGGTCAACGGTT+TGG | + | chr3_2:77910788-77910807 | Msa0427200:CDS | 50.0% | |
| ! | AAGTCTGGTCAACGGTTTGG+TGG | + | chr3_2:77910791-77910810 | Msa0427200:CDS | 50.0% |
| CAGTGGAACAAGGAAGTTGC+AGG | - | chr3_2:77911222-77911241 | None:intergenic | 50.0% | |
| CTCACTTCTCTCCACTGTAC+AGG | + | chr3_2:77911414-77911433 | Msa0427200:intron | 50.0% | |
| !! | ATCTGTTCAGGTTGGCCATC+AGG | - | chr3_2:77911474-77911493 | None:intergenic | 50.0% |
| CCTCCATTCAAACCCGTATG+TGG | - | chr3_2:77911571-77911590 | None:intergenic | 50.0% | |
| CCACATACGGGTTTGAATGG+AGG | + | chr3_2:77911568-77911587 | Msa0427200:CDS | 50.0% | |
| GAAGGGCCTTGATGCTTATC+AGG | - | chr3_2:77911904-77911923 | None:intergenic | 50.0% | |
| ! | GGAGAGAGAGGTGGCTTTTA+TGG | - | chr3_2:77912222-77912241 | None:intergenic | 50.0% |
| AAAAAGAGGGAGGGAGAGAG+AGG | - | chr3_2:77912234-77912253 | None:intergenic | 50.0% | |
| !!! | CTCTCTCCCTCCCTCTTTTT+TGG | + | chr3_2:77912234-77912253 | Msa0427200:intron | 50.0% |
| CATTGCCTGCAATCACGGAA+AGG | - | chr3_2:77912313-77912332 | None:intergenic | 50.0% | |
| CTTTCCGTGATTGCAGGCAA+TGG | + | chr3_2:77912311-77912330 | Msa0427200:intron | 50.0% | |
| TCAGCCATTGCCTGCAATCA+CGG | - | chr3_2:77912318-77912337 | None:intergenic | 50.0% | |
| ATACTACTGCCTCCTAAGCC+GGG | - | chr3_2:77912395-77912414 | None:intergenic | 50.0% | |
| CATACTACTGCCTCCTAAGC+CGG | - | chr3_2:77912396-77912415 | None:intergenic | 50.0% | |
| TAAACACCACAACCACGCCG+AGG | - | chr3_2:77908490-77908509 | None:intergenic | 55.0% | |
| AGCCTCGATGCACTCCGAAT+TGG | + | chr3_2:77909271-77909290 | Msa0427200:intron | 55.0% | |
| CTCCAATTCGGAGTGCATCG+AGG | - | chr3_2:77909276-77909295 | None:intergenic | 55.0% | |
| GTTGGGACTCGTGAGGAGTT+TGG | + | chr3_2:77909854-77909873 | Msa0427200:intron | 55.0% | |
| TAAGCATCAAGGCCCTTCGC+AGG | + | chr3_2:77911906-77911925 | Msa0427200:CDS | 55.0% | |
| TACTACTGCCTCCTAAGCCG+GGG | - | chr3_2:77912394-77912413 | None:intergenic | 55.0% | |
| CGGCTTAGGAGGCAGTAGTA+TGG | + | chr3_2:77912394-77912413 | Msa0427200:exon | 55.0% | |
| AGACAACCTCGGCGTGGTTG+TGG | + | chr3_2:77908481-77908500 | Msa0427200:five_prime_UTR | 60.0% | |
| AAGAGGGAGGGAGAGAGAGG+TGG | - | chr3_2:77912231-77912250 | None:intergenic | 60.0% | |
| CAATGCTCTCTCCCCGGCTT+AGG | + | chr3_2:77912380-77912399 | Msa0427200:CDS | 60.0% | |
| TGCTCTCTCCCCGGCTTAGG+AGG | + | chr3_2:77912383-77912402 | Msa0427200:exon | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 77908477 | 77912611 | 77908477 | ID=Msa0427200;Name=Msa0427200 |
| chr3_2 | mRNA | 77908477 | 77912611 | 77908477 | ID=Msa0427200-mRNA-1;Parent=Msa0427200;Name=Msa0427200-mRNA-1;_AED=0.02;_eAED=0.02;_QI=155|1|1|1|1|1|7|210|274 |
| chr3_2 | exon | 77908477 | 77908751 | 77908477 | ID=Msa0427200-mRNA-1:exon:20372;Parent=Msa0427200-mRNA-1 |
| chr3_2 | exon | 77908982 | 77909014 | 77908982 | ID=Msa0427200-mRNA-1:exon:20373;Parent=Msa0427200-mRNA-1 |
| chr3_2 | exon | 77910023 | 77910121 | 77910023 | ID=Msa0427200-mRNA-1:exon:20374;Parent=Msa0427200-mRNA-1 |
| chr3_2 | exon | 77910716 | 77910836 | 77910716 | ID=Msa0427200-mRNA-1:exon:20375;Parent=Msa0427200-mRNA-1 |
| chr3_2 | exon | 77911436 | 77911757 | 77911436 | ID=Msa0427200-mRNA-1:exon:20376;Parent=Msa0427200-mRNA-1 |
| chr3_2 | exon | 77911873 | 77911927 | 77911873 | ID=Msa0427200-mRNA-1:exon:20377;Parent=Msa0427200-mRNA-1 |
| chr3_2 | exon | 77912327 | 77912611 | 77912327 | ID=Msa0427200-mRNA-1:exon:20378;Parent=Msa0427200-mRNA-1 |
| chr3_2 | five_prime_UTR | 77908477 | 77908631 | 77908477 | ID=Msa0427200-mRNA-1:five_prime_utr;Parent=Msa0427200-mRNA-1 |
| chr3_2 | CDS | 77908632 | 77908751 | 77908632 | ID=Msa0427200-mRNA-1:cds;Parent=Msa0427200-mRNA-1 |
| chr3_2 | CDS | 77908982 | 77909014 | 77908982 | ID=Msa0427200-mRNA-1:cds;Parent=Msa0427200-mRNA-1 |
| chr3_2 | CDS | 77910023 | 77910121 | 77910023 | ID=Msa0427200-mRNA-1:cds;Parent=Msa0427200-mRNA-1 |
| chr3_2 | CDS | 77910716 | 77910836 | 77910716 | ID=Msa0427200-mRNA-1:cds;Parent=Msa0427200-mRNA-1 |
| chr3_2 | CDS | 77911436 | 77911757 | 77911436 | ID=Msa0427200-mRNA-1:cds;Parent=Msa0427200-mRNA-1 |
| chr3_2 | CDS | 77911873 | 77911927 | 77911873 | ID=Msa0427200-mRNA-1:cds;Parent=Msa0427200-mRNA-1 |
| chr3_2 | CDS | 77912327 | 77912401 | 77912327 | ID=Msa0427200-mRNA-1:cds;Parent=Msa0427200-mRNA-1 |
| chr3_2 | three_prime_UTR | 77912402 | 77912611 | 77912402 | ID=Msa0427200-mRNA-1:three_prime_utr;Parent=Msa0427200-mRNA-1 |
| Gene Sequence |
| Protein sequence |
