AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0709190


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0709190 MtrunA17_Chr8g0381861 76.176 319 25 3 1 306 1 281 8.49e-142 402
Msa0709190 MtrunA17_Chr3g0123831 46.809 235 78 5 66 296 73 264 8.62e-45 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0709190 AT5G65250.1 47.489 219 75 3 66 284 93 271 2.50e-49 167

Find 92 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAGGCAGCTTGAGAAAT+TGG 0.177372 5_1:+328006 Msa0709190:CDS
CTTTGACCATGGCTTCATTC+AGG 0.224855 5_1:-327375 None:intergenic
AGCCCTGCAATCAGACATTT+TGG 0.237492 5_1:+329243 Msa0709190:CDS
AATTTGAAAGTGTGACTATT+TGG 0.238960 5_1:-327473 None:intergenic
TCATTCAGGCTTCTTCTGTT+TGG 0.240961 5_1:-327361 None:intergenic
CATTCAGGCTTCTTCTGTTT+GGG 0.241140 5_1:-327360 None:intergenic
CCGTGTTCTTCACTAGTTTC+AGG 0.242419 5_1:-329787 None:intergenic
TTTGCAGAGAATTGAGAAAT+TGG 0.262448 5_1:+327943 Msa0709190:CDS
GTAGTAATTACCTCAGTTAT+AGG 0.273196 5_1:-328067 None:intergenic
GGAAAGGAAGGAATCAAAAT+TGG 0.279238 5_1:-327699 None:intergenic
GGCTAATGCTCTTGCGGCCT+CGG 0.289526 5_1:-329224 None:intergenic
GAACGGTGGGGTTTCTGTTT+CGG 0.293881 5_1:+327910 Msa0709190:CDS
CCGTCGCCGTGACTGCAATT+TGG 0.295008 5_1:+327768 Msa0709190:CDS
AGTAGAAGAAAGAACATTAC+TGG 0.332304 5_1:-327433 None:intergenic
AGAGTAATGCGACGGTTGTT+AGG 0.336551 5_1:+327978 Msa0709190:CDS
AGCTTGAGAAATTGGGGATT+AGG 0.351998 5_1:+328014 Msa0709190:CDS
TCTAGGCAGCTTGAGAAATT+GGG 0.354881 5_1:+328007 Msa0709190:CDS
TCTCCAAAATGTCTGATTGC+AGG 0.356336 5_1:-329246 None:intergenic
AGGTTCCTTCAAACCCTTCC+TGG 0.363702 5_1:-328047 None:intergenic
GAATGAGGAGTTGAAGAAAA+AGG 0.364028 5_1:-327545 None:intergenic
TGGGGTTTCTGTTTCGGAGG+TGG 0.403058 5_1:+327916 Msa0709190:CDS
TTGAATGAAGACTGCAGCTC+TGG 0.409148 5_1:+329189 Msa0709190:intron
TATCTTTGAAACAAAGTATG+AGG 0.415913 5_1:+328758 Msa0709190:CDS
TGGAAAGTGGTTTGAGGCTG+AGG 0.435164 5_1:-327601 None:intergenic
AGAGAAGAGCGGAGAGTTCG+AGG 0.448141 5_1:-327724 None:intergenic
ATTTGAAAGTGTGACTATTT+GGG 0.448187 5_1:-327472 None:intergenic
GAGTAATGCGACGGTTGTTA+GGG 0.448272 5_1:+327979 Msa0709190:CDS
GACGGAAATTTGAGATCGGC+GGG 0.467109 5_1:-327669 None:intergenic
GCAGAGAATTGAGAAATTGG+AGG 0.472739 5_1:+327946 Msa0709190:CDS
GGAAGTGAAACGGTGGGGTG+TGG 0.478399 5_1:-327621 None:intergenic
TTGCGAAGGCAGGTAAGCTA+TGG 0.479688 5_1:+329755 Msa0709190:CDS
AGTGGTTTGAGGCTGAGGAT+TGG 0.483125 5_1:-327596 None:intergenic
GAAGGAATCAAAATTGGAAT+CGG 0.487467 5_1:-327693 None:intergenic
AAACGGTGGGGTGTGGAAAG+TGG 0.487596 5_1:-327614 None:intergenic
AGAGGACGTAAGAGTGAATG+AGG 0.489716 5_1:-327560 None:intergenic
CGGTGATTAGGAGAAGGAAA+TGG 0.490410 5_1:+327873 Msa0709190:CDS
GGATTAGGTTTCGTGTTACC+AGG 0.498013 5_1:+328029 Msa0709190:CDS
ATTCTTGCAATTGCGAAGGC+AGG 0.502036 5_1:+329745 Msa0709190:CDS
CGGAGAGTTCGAGGAAGGAA+AGG 0.506937 5_1:-327715 None:intergenic
GAGAATTGAGAAATTGGAGG+AGG 0.507588 5_1:+327949 Msa0709190:CDS
TGTTACCAGGAAGGGTTTGA+AGG 0.509421 5_1:+328042 Msa0709190:CDS
GGAGTTGGAGTGGACGGTGT+AGG 0.511955 5_1:-327642 None:intergenic
CGTGACTGCAATTTGGAAGA+AGG 0.512903 5_1:+327775 Msa0709190:CDS
ATTGGAGTATTGAGATGAAG+AGG 0.520273 5_1:-327578 None:intergenic
CTCCAAAATGTCTGATTGCA+GGG 0.525218 5_1:-329245 None:intergenic
CGGAAATTTGAGATCGGCGG+GGG 0.525952 5_1:-327667 None:intergenic
ACTTTCATTTCAGGATTACA+AGG 0.527608 5_1:+330177 Msa0709190:intron
ATCAAAATTGGAATCGGCGA+CGG 0.530085 5_1:-327687 None:intergenic
TTCTTCTGTTTGGGTGACAA+AGG 0.530173 5_1:-327351 None:intergenic
CTTCTTCCAAATTGCAGTCA+CGG 0.532215 5_1:-327774 None:intergenic
GGGGAAGGAGTTGGAGTGGA+CGG 0.535310 5_1:-327648 None:intergenic
CTAGGCAGCTTGAGAAATTG+GGG 0.538326 5_1:+328008 Msa0709190:CDS
CGGTGGGGTTTCTGTTTCGG+AGG 0.539820 5_1:+327913 Msa0709190:CDS
AGGTTTCGTGTTACCAGGAA+GGG 0.543976 5_1:+328034 Msa0709190:CDS
GAGAGACGGTGTTGAACGGT+GGG 0.546933 5_1:+327897 Msa0709190:CDS
GAGAAGGAAATGGAGAGAGA+CGG 0.562581 5_1:+327883 Msa0709190:CDS
TGGCAAGTGAGTAACATTGT+TGG 0.564961 5_1:-327500 None:intergenic
TTTGAAGGAACCTATAACTG+AGG 0.565016 5_1:+328057 Msa0709190:CDS
AAGAGCGGAGAGTTCGAGGA+AGG 0.566579 5_1:-327720 None:intergenic
TAGGTTTCGTGTTACCAGGA+AGG 0.568467 5_1:+328033 Msa0709190:CDS
GAGTTCGAGGAAGGAAAGGA+AGG 0.569587 5_1:-327711 None:intergenic
AATGCGTGAAATGGTGATGA+TGG 0.584311 5_1:-327520 None:intergenic
TGGAGAGAGACGGTGTTGAA+CGG 0.589136 5_1:+327893 Msa0709190:CDS
GTATGAGGTTTCAAGAAGGA+AGG 0.589263 5_1:+328773 Msa0709190:CDS
GGACGGTGTAGGAAGTGAAA+CGG 0.592277 5_1:-327631 None:intergenic
TGCGAAGGCAGGTAAGCTAT+GGG 0.592521 5_1:+329756 Msa0709190:CDS
AAGGAGTTATATCTTGCTAT+CGG 0.595941 5_1:+327794 Msa0709190:CDS
CGACGGAAATTTGAGATCGG+CGG 0.599042 5_1:-327670 None:intergenic
CTGGTGCGGTGATTAGGAGA+AGG 0.610719 5_1:+327867 Msa0709190:CDS
GGTGTAGGAAGTGAAACGGT+GGG 0.613998 5_1:-327627 None:intergenic
CGGCGACGGAAATTTGAGAT+CGG 0.614058 5_1:-327673 None:intergenic
CCAAATTGCAGTCACGGCGA+CGG 0.616365 5_1:-327768 None:intergenic
GGGGTGTGGAAAGTGGTTTG+AGG 0.618981 5_1:-327607 None:intergenic
TTGCAGGGCTAATGCTCTTG+CGG 0.622054 5_1:-329230 None:intergenic
AAGAAGCCTGAATGAAGCCA+TGG 0.626541 5_1:+327369 Msa0709190:five_prime_UTR
CAAAGTATGAGGTTTCAAGA+AGG 0.626591 5_1:+328769 Msa0709190:CDS
GGATTTGAAGAGTAATGCGA+CGG 0.629644 5_1:+327970 Msa0709190:CDS
ACAGTACAGGATCTACATCT+CGG 0.634582 5_1:-328919 None:intergenic
GACGGTGAAAGATACGATGA+GGG 0.637410 5_1:-327750 None:intergenic
CGACGGTGAAAGATACGATG+AGG 0.643423 5_1:-327751 None:intergenic
TCTCATTCTTGCAATTGCGA+AGG 0.648334 5_1:+329741 Msa0709190:CDS
AGAGAGACGGTGTTGAACGG+TGG 0.648405 5_1:+327896 Msa0709190:CDS
CGGTGTAGGAAGTGAAACGG+TGG 0.657647 5_1:-327628 None:intergenic
AGAGACGGTGTTGAACGGTG+GGG 0.693868 5_1:+327898 Msa0709190:CDS
TCGGTAACAGAGTTGCTCCG+TGG 0.696566 5_1:+327813 Msa0709190:CDS
CCTGAAACTAGTGAAGAACA+CGG 0.696745 5_1:+329787 Msa0709190:CDS
GATGAGGGAAGAGAGAAGAG+CGG 0.709448 5_1:-327735 None:intergenic
CAGATGAATATGCATTGGTG+TGG 0.711307 5_1:+330257 Msa0709190:CDS
TCTGGCACAGAAGAATTCCG+AGG 0.724089 5_1:+329207 Msa0709190:CDS
CTCAGCTGCGAATCTCAATG+CGG 0.734213 5_1:+329828 Msa0709190:CDS
GTGTAGGAAGTGAAACGGTG+GGG 0.736083 5_1:-327626 None:intergenic
ACGGAAATTTGAGATCGGCG+GGG 0.740613 5_1:-327668 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTCATAATAAACTTTA+TGG - chr5_1:328154-328173 None:intergenic 15.0%
!! TATTCTATCTAATATTCAAT+AGG - chr5_1:328411-328430 None:intergenic 15.0%
!! TATTGAATATTAGATAGAAT+AGG + chr5_1:328410-328429 Msa0709190:intron 15.0%
!!! AGTAAGTTGAACAATAAATT+GGG - chr5_1:328269-328288 None:intergenic 20.0%
!!! AAGTAAGTTGAACAATAAAT+TGG - chr5_1:328270-328289 None:intergenic 20.0%
!!! TTTAGTATAGTTTTTACCAA+TGG + chr5_1:328379-328398 Msa0709190:intron 20.0%
!!! ATTTTGTTATTTGAACAAGT+CGG - chr5_1:328481-328500 None:intergenic 20.0%
!!! AGTTTGTTATTGAACTTTAA+AGG + chr5_1:329379-329398 Msa0709190:intron 20.0%
!!! TTAAAGGTAACATTATTTTG+TGG + chr5_1:329395-329414 Msa0709190:intron 20.0%
!! TAATGATTACACATTTACTA+AGG + chr5_1:330016-330035 Msa0709190:intron 20.0%
!! AATGATTACACATTTACTAA+GGG + chr5_1:330017-330036 Msa0709190:intron 20.0%
!! ATTTGAAAGTGTGACTATTT+GGG - chr5_1:327475-327494 None:intergenic 25.0%
!! AATTTGAAAGTGTGACTATT+TGG - chr5_1:327476-327495 None:intergenic 25.0%
!! TAAGTTGGAATATATTCAAG+AGG - chr5_1:328205-328224 None:intergenic 25.0%
!!! ATTCAAATAAAGCTCTAAGT+TGG - chr5_1:328220-328239 None:intergenic 25.0%
!!! TATCTTTGAAACAAAGTATG+AGG + chr5_1:328758-328777 Msa0709190:CDS 25.0%
! TTTATGTGCCAATAAAATTC+TGG - chr5_1:329996-330015 None:intergenic 25.0%
! TGTTCATTTACTTTCATTTC+AGG + chr5_1:330168-330187 Msa0709190:intron 25.0%
!! TTTTTGTTACAGCAAAACTA+AGG - chr5_1:330237-330256 None:intergenic 25.0%
! AAAAACAGATGAATATGCAT+TGG + chr5_1:330252-330271 Msa0709190:CDS 25.0%
AGTAGAAGAAAGAACATTAC+TGG - chr5_1:327436-327455 None:intergenic 30.0%
GAAGGAATCAAAATTGGAAT+CGG - chr5_1:327696-327715 None:intergenic 30.0%
! AAGGAGTTATATCTTGCTAT+CGG + chr5_1:327794-327813 Msa0709190:CDS 30.0%
TTTGCAGAGAATTGAGAAAT+TGG + chr5_1:327943-327962 Msa0709190:CDS 30.0%
GTAGTAATTACCTCAGTTAT+AGG - chr5_1:328070-328089 None:intergenic 30.0%
! ATTCAATAGGTCTTTTCCAT+TGG - chr5_1:328398-328417 None:intergenic 30.0%
! CCAGATTGAGTCAATTTTTA+GGG - chr5_1:328873-328892 None:intergenic 30.0%
! ACCAGATTGAGTCAATTTTT+AGG - chr5_1:328874-328893 None:intergenic 30.0%
TTCCAGTAATATGAATTCCT+CGG - chr5_1:328953-328972 None:intergenic 30.0%
!! TCATTAACATTTTGAGTGTC+TGG + chr5_1:329089-329108 Msa0709190:intron 30.0%
GGAGTTTAAGTAACATTGAA+GGG - chr5_1:329321-329340 None:intergenic 30.0%
AAACTGGAATACTAGATTCA+TGG - chr5_1:329578-329597 None:intergenic 30.0%
TTTAACCCAAGCTTCAAATT+TGG - chr5_1:329870-329889 None:intergenic 30.0%
GAAAACCATCAAATTACAGA+GGG + chr5_1:329895-329914 Msa0709190:intron 30.0%
! CAAAGTAGCCAGAATTTTAT+TGG + chr5_1:329985-330004 Msa0709190:intron 30.0%
ACTTTCATTTCAGGATTACA+AGG + chr5_1:330177-330196 Msa0709190:intron 30.0%
AAAAAGGTGAATGCGTGAAA+TGG - chr5_1:327532-327551 None:intergenic 35.0%
GAATGAGGAGTTGAAGAAAA+AGG - chr5_1:327548-327567 None:intergenic 35.0%
!! ATTGGAGTATTGAGATGAAG+AGG - chr5_1:327581-327600 None:intergenic 35.0%
GGAAAGGAAGGAATCAAAAT+TGG - chr5_1:327702-327721 None:intergenic 35.0%
ACCAAAAACAACAAACTCCA+CGG - chr5_1:327833-327852 None:intergenic 35.0%
!!! AGTTTGTTGTTTTTGGTGGT+TGG + chr5_1:327836-327855 Msa0709190:CDS 35.0%
TTTGAAGGAACCTATAACTG+AGG + chr5_1:328057-328076 Msa0709190:CDS 35.0%
GGAAGAAAAAAACAGGAATG+TGG + chr5_1:328562-328581 Msa0709190:intron 35.0%
! TTGCAAGAAAATGCAGGTTT+TGG + chr5_1:328710-328729 Msa0709190:intron 35.0%
! TGCAAGAAAATGCAGGTTTT+GGG + chr5_1:328711-328730 Msa0709190:intron 35.0%
CAAAGTATGAGGTTTCAAGA+AGG + chr5_1:328769-328788 Msa0709190:CDS 35.0%
AGGTCAGAAAACAATGAAAC+TGG + chr5_1:328793-328812 Msa0709190:intron 35.0%
GGTCAGAAAACAATGAAACT+GGG + chr5_1:328794-328813 Msa0709190:intron 35.0%
GTCAGAAAACAATGAAACTG+GGG + chr5_1:328795-328814 Msa0709190:intron 35.0%
! CCCTAAAAATTGACTCAATC+TGG + chr5_1:328870-328889 Msa0709190:intron 35.0%
CGGAGTTTAAGTAACATTGA+AGG - chr5_1:329322-329341 None:intergenic 35.0%
AAATCTCTAGTCTGACGTAT+GGG - chr5_1:329604-329623 None:intergenic 35.0%
AAAATCTCTAGTCTGACGTA+TGG - chr5_1:329605-329624 None:intergenic 35.0%
! TCGAGTTTGACTTATCTTGA+TGG + chr5_1:329676-329695 Msa0709190:intron 35.0%
TGGTGTTTGATCATTCATGT+AGG + chr5_1:329696-329715 Msa0709190:intron 35.0%
TTGAAGCTTGGGTTAAACTA+AGG + chr5_1:329873-329892 Msa0709190:intron 35.0%
GGAAAACCATCAAATTACAG+AGG + chr5_1:329894-329913 Msa0709190:intron 35.0%
TTCATCCCTCTGTAATTTGA+TGG - chr5_1:329903-329922 None:intergenic 35.0%
! ACTTTGACTTTGTGTGTAGA+TGG - chr5_1:329971-329990 None:intergenic 35.0%
TTACTCAACGAGTCAATTCA+AGG + chr5_1:330076-330095 Msa0709190:intron 35.0%
!! TCTGGTTCTGTGGTAAATTT+CGG + chr5_1:330120-330139 Msa0709190:intron 35.0%
TTCTTCTGTTTGGGTGACAA+AGG - chr5_1:327354-327373 None:intergenic 40.0%
CATTCAGGCTTCTTCTGTTT+GGG - chr5_1:327363-327382 None:intergenic 40.0%
TCATTCAGGCTTCTTCTGTT+TGG - chr5_1:327364-327383 None:intergenic 40.0%
! TTTTCAGCTCTCTTTGACCA+TGG - chr5_1:327389-327408 None:intergenic 40.0%
TGGCAAGTGAGTAACATTGT+TGG - chr5_1:327503-327522 None:intergenic 40.0%
! AATGCGTGAAATGGTGATGA+TGG - chr5_1:327523-327542 None:intergenic 40.0%
ATCAAAATTGGAATCGGCGA+CGG - chr5_1:327690-327709 None:intergenic 40.0%
CTTCTTCCAAATTGCAGTCA+CGG - chr5_1:327777-327796 None:intergenic 40.0%
!!! TCCGTGGAGTTTGTTGTTTT+TGG + chr5_1:327829-327848 Msa0709190:CDS 40.0%
!!! GTGGAGTTTGTTGTTTTTGG+TGG + chr5_1:327832-327851 Msa0709190:CDS 40.0%
GCAGAGAATTGAGAAATTGG+AGG + chr5_1:327946-327965 Msa0709190:CDS 40.0%
GAGAATTGAGAAATTGGAGG+AGG + chr5_1:327949-327968 Msa0709190:CDS 40.0%
GGATTTGAAGAGTAATGCGA+CGG + chr5_1:327970-327989 Msa0709190:CDS 40.0%
TCTAGGCAGCTTGAGAAATT+GGG + chr5_1:328007-328026 Msa0709190:CDS 40.0%
AGCTTGAGAAATTGGGGATT+AGG + chr5_1:328014-328033 Msa0709190:CDS 40.0%
!! GAGAGTTTGTTAGAACACAG+CGG + chr5_1:328540-328559 Msa0709190:intron 40.0%
!! AGAGTTTGTTAGAACACAGC+GGG + chr5_1:328541-328560 Msa0709190:intron 40.0%
GTGGAATCTGAGCAAAAGAT+AGG + chr5_1:328581-328600 Msa0709190:intron 40.0%
ATGAGCTTGCAAGAAAATGC+AGG + chr5_1:328704-328723 Msa0709190:intron 40.0%
!!! AAGAAAATGCAGGTTTTGGG+TGG + chr5_1:328714-328733 Msa0709190:intron 40.0%
!! GTTTTGGGTGGAAATGACAT+TGG + chr5_1:328726-328745 Msa0709190:CDS 40.0%
GTATGAGGTTTCAAGAAGGA+AGG + chr5_1:328773-328792 Msa0709190:CDS 40.0%
! AGTGGCTGCTTTCATGAAAT+GGG - chr5_1:328836-328855 None:intergenic 40.0%
! TAGTGGCTGCTTTCATGAAA+TGG - chr5_1:328837-328856 None:intergenic 40.0%
! AATTGACTCAATCTGGTTGC+AGG + chr5_1:328877-328896 Msa0709190:intron 40.0%
ACAGTACAGGATCTACATCT+CGG - chr5_1:328922-328941 None:intergenic 40.0%
CAGTAATATGAATTCCTCGG+AGG - chr5_1:328950-328969 None:intergenic 40.0%
CTCCGAGGAATTCATATTAC+TGG + chr5_1:328948-328967 Msa0709190:intron 40.0%
!! CATTTTGAGTGTCTGGTTGA+AGG + chr5_1:329096-329115 Msa0709190:intron 40.0%
CTCCAAAATGTCTGATTGCA+GGG - chr5_1:329248-329267 None:intergenic 40.0%
TCTCCAAAATGTCTGATTGC+AGG - chr5_1:329249-329268 None:intergenic 40.0%
!! GCAATCAGACATTTTGGAGA+AGG + chr5_1:329249-329268 Msa0709190:CDS 40.0%
! AAAGGTTTTGCTAGCAATGC+AGG + chr5_1:329288-329307 Msa0709190:CDS 40.0%
!! AAAGAGTGCTTGCTCTTTCA+CGG - chr5_1:329342-329361 None:intergenic 40.0%
!! AACACTTTAGCTCTCATGTG+CGG + chr5_1:329435-329454 Msa0709190:intron 40.0%
CACATCATTGTGTTGTGTGT+GGG - chr5_1:329518-329537 None:intergenic 40.0%
TCACATCATTGTGTTGTGTG+TGG - chr5_1:329519-329538 None:intergenic 40.0%
GGAATACTAGATTCATGGTC+TGG - chr5_1:329573-329592 None:intergenic 40.0%
TCTGACGTATGGGTTTAAAC+TGG - chr5_1:329594-329613 None:intergenic 40.0%
TCTCATTCTTGCAATTGCGA+AGG + chr5_1:329741-329760 Msa0709190:CDS 40.0%
CCTGAAACTAGTGAAGAACA+CGG + chr5_1:329787-329806 Msa0709190:CDS 40.0%
GAATCTCAATGCGGTAAATC+AGG + chr5_1:329837-329856 Msa0709190:intron 40.0%
! GTCCACCAAATTTGAAGCTT+GGG + chr5_1:329862-329881 Msa0709190:intron 40.0%
AACCCAAGCTTCAAATTTGG+TGG - chr5_1:329867-329886 None:intergenic 40.0%
! TTTTTCCCCATCTGTATCCA+CGG - chr5_1:330056-330075 None:intergenic 40.0%
TCAACGAGTCAATTCAAGGA+GGG + chr5_1:330080-330099 Msa0709190:intron 40.0%
!! CTGGTTCTGTGGTAAATTTC+GGG + chr5_1:330121-330140 Msa0709190:intron 40.0%
! CAGATGAATATGCATTGGTG+TGG + chr5_1:330257-330276 Msa0709190:CDS 40.0%
AAGAAGCCTGAATGAAGCCA+TGG + chr5_1:327369-327388 Msa0709190:five_prime_UTR 45.0%
CTTTGACCATGGCTTCATTC+AGG - chr5_1:327378-327397 None:intergenic 45.0%
AGAGGACGTAAGAGTGAATG+AGG - chr5_1:327563-327582 None:intergenic 45.0%
GACGGTGAAAGATACGATGA+GGG - chr5_1:327753-327772 None:intergenic 45.0%
CGTGACTGCAATTTGGAAGA+AGG + chr5_1:327775-327794 Msa0709190:CDS 45.0%
!!! TTGGTGGTTGGTGTTTTGAC+TGG + chr5_1:327848-327867 Msa0709190:CDS 45.0%
!! TTTTGACTGGTGCGGTGATT+AGG + chr5_1:327861-327880 Msa0709190:CDS 45.0%
CGGTGATTAGGAGAAGGAAA+TGG + chr5_1:327873-327892 Msa0709190:CDS 45.0%
GAGAAGGAAATGGAGAGAGA+CGG + chr5_1:327883-327902 Msa0709190:CDS 45.0%
AGAGTAATGCGACGGTTGTT+AGG + chr5_1:327978-327997 Msa0709190:CDS 45.0%
GAGTAATGCGACGGTTGTTA+GGG + chr5_1:327979-327998 Msa0709190:CDS 45.0%
!! CGGTTGTTAGGGTTTTGTCT+AGG + chr5_1:327990-328009 Msa0709190:CDS 45.0%
GTCTAGGCAGCTTGAGAAAT+TGG + chr5_1:328006-328025 Msa0709190:CDS 45.0%
CTAGGCAGCTTGAGAAATTG+GGG + chr5_1:328008-328027 Msa0709190:CDS 45.0%
GGATTAGGTTTCGTGTTACC+AGG + chr5_1:328029-328048 Msa0709190:CDS 45.0%
TAGGTTTCGTGTTACCAGGA+AGG + chr5_1:328033-328052 Msa0709190:CDS 45.0%
AGGTTTCGTGTTACCAGGAA+GGG + chr5_1:328034-328053 Msa0709190:CDS 45.0%
TGTTACCAGGAAGGGTTTGA+AGG + chr5_1:328042-328061 Msa0709190:CDS 45.0%
CACAGCGGGAAGAAAAAAAC+AGG + chr5_1:328555-328574 Msa0709190:intron 45.0%
! TGGCTGCTTTCATGAAATGG+GGG - chr5_1:328834-328853 None:intergenic 45.0%
! GTGGCTGCTTTCATGAAATG+GGG - chr5_1:328835-328854 None:intergenic 45.0%
AGGGAGATTCACAGTTGTAG+TGG - chr5_1:328854-328873 None:intergenic 45.0%
TTGAATGAAGACTGCAGCTC+TGG + chr5_1:329189-329208 Msa0709190:intron 45.0%
! AGCCCTGCAATCAGACATTT+TGG + chr5_1:329243-329262 Msa0709190:CDS 45.0%
!! AGACATTTTGGAGAAGGAGC+TGG + chr5_1:329255-329274 Msa0709190:CDS 45.0%
!! GACATTTTGGAGAAGGAGCT+GGG + chr5_1:329256-329275 Msa0709190:CDS 45.0%
!! ACATTTTGGAGAAGGAGCTG+GGG + chr5_1:329257-329276 Msa0709190:CDS 45.0%
ATTGTGTTGTGTGTGGGTGT+GGG - chr5_1:329512-329531 None:intergenic 45.0%
ATTCTTGCAATTGCGAAGGC+AGG + chr5_1:329745-329764 Msa0709190:CDS 45.0%
! CCGTGTTCTTCACTAGTTTC+AGG - chr5_1:329790-329809 None:intergenic 45.0%
TCTCAATGCGGTAAATCAGG+AGG + chr5_1:329840-329859 Msa0709190:intron 45.0%
! GGTCCACCAAATTTGAAGCT+TGG + chr5_1:329861-329880 Msa0709190:intron 45.0%
AAGTTTCCCGTGGATACAGA+TGG + chr5_1:330046-330065 Msa0709190:intron 45.0%
AGTTTCCCGTGGATACAGAT+GGG + chr5_1:330047-330066 Msa0709190:intron 45.0%
! TTTTCCCCATCTGTATCCAC+GGG - chr5_1:330055-330074 None:intergenic 45.0%
CTCAACGAGTCAATTCAAGG+AGG + chr5_1:330079-330098 Msa0709190:intron 45.0%
CAACGAGTCAATTCAAGGAG+GGG + chr5_1:330081-330100 Msa0709190:intron 45.0%
GGAGAATTGTCTGAACTCTC+TGG + chr5_1:330102-330121 Msa0709190:intron 45.0%
! AGTGGTTTGAGGCTGAGGAT+TGG - chr5_1:327599-327618 None:intergenic 50.0%
! TGGAAAGTGGTTTGAGGCTG+AGG - chr5_1:327604-327623 None:intergenic 50.0%
GTGTAGGAAGTGAAACGGTG+GGG - chr5_1:327629-327648 None:intergenic 50.0%
GGTGTAGGAAGTGAAACGGT+GGG - chr5_1:327630-327649 None:intergenic 50.0%
GGACGGTGTAGGAAGTGAAA+CGG - chr5_1:327634-327653 None:intergenic 50.0%
! ACGGAAATTTGAGATCGGCG+GGG - chr5_1:327671-327690 None:intergenic 50.0%
! GACGGAAATTTGAGATCGGC+GGG - chr5_1:327672-327691 None:intergenic 50.0%
! CGACGGAAATTTGAGATCGG+CGG - chr5_1:327673-327692 None:intergenic 50.0%
! CGGCGACGGAAATTTGAGAT+CGG - chr5_1:327676-327695 None:intergenic 50.0%
GAGTTCGAGGAAGGAAAGGA+AGG - chr5_1:327714-327733 None:intergenic 50.0%
GATGAGGGAAGAGAGAAGAG+CGG - chr5_1:327738-327757 None:intergenic 50.0%
CGACGGTGAAAGATACGATG+AGG - chr5_1:327754-327773 None:intergenic 50.0%
!!! GGTTGGTGTTTTGACTGGTG+CGG + chr5_1:327853-327872 Msa0709190:CDS 50.0%
! TGGAGAGAGACGGTGTTGAA+CGG + chr5_1:327893-327912 Msa0709190:CDS 50.0%
GAACGGTGGGGTTTCTGTTT+CGG + chr5_1:327910-327929 Msa0709190:CDS 50.0%
AGGTTCCTTCAAACCCTTCC+TGG - chr5_1:328050-328069 None:intergenic 50.0%
TCTGGCACAGAAGAATTCCG+AGG + chr5_1:329207-329226 Msa0709190:CDS 50.0%
TTGCAGGGCTAATGCTCTTG+CGG - chr5_1:329233-329252 None:intergenic 50.0%
!! CATTTTGGAGAAGGAGCTGG+GGG + chr5_1:329258-329277 Msa0709190:CDS 50.0%
CATTGTGTTGTGTGTGGGTG+TGG - chr5_1:329513-329532 None:intergenic 50.0%
TTGCGAAGGCAGGTAAGCTA+TGG + chr5_1:329755-329774 Msa0709190:CDS 50.0%
TGCGAAGGCAGGTAAGCTAT+GGG + chr5_1:329756-329775 Msa0709190:CDS 50.0%
CTCAGCTGCGAATCTCAATG+CGG + chr5_1:329828-329847 Msa0709190:CDS 50.0%
CTGTATCCACGGGAAACTTG+AGG - chr5_1:330045-330064 None:intergenic 50.0%
GTTTCCCGTGGATACAGATG+GGG + chr5_1:330048-330067 Msa0709190:intron 50.0%
!! GTCTGAACTCTCTGGTTCTG+TGG + chr5_1:330110-330129 Msa0709190:intron 50.0%
GGGGTGTGGAAAGTGGTTTG+AGG - chr5_1:327610-327629 None:intergenic 55.0%
AAACGGTGGGGTGTGGAAAG+TGG - chr5_1:327617-327636 None:intergenic 55.0%
CGGTGTAGGAAGTGAAACGG+TGG - chr5_1:327631-327650 None:intergenic 55.0%
! AATTTGAGATCGGCGGGGGA+AGG - chr5_1:327666-327685 None:intergenic 55.0%
! CGGAAATTTGAGATCGGCGG+GGG - chr5_1:327670-327689 None:intergenic 55.0%
CGGAGAGTTCGAGGAAGGAA+AGG - chr5_1:327718-327737 None:intergenic 55.0%
AAGAGCGGAGAGTTCGAGGA+AGG - chr5_1:327723-327742 None:intergenic 55.0%
AGAGAAGAGCGGAGAGTTCG+AGG - chr5_1:327727-327746 None:intergenic 55.0%
CCAAATTGCAGTCACGGCGA+CGG - chr5_1:327771-327790 None:intergenic 55.0%
TCGGTAACAGAGTTGCTCCG+TGG + chr5_1:327813-327832 Msa0709190:CDS 55.0%
CTGGTGCGGTGATTAGGAGA+AGG + chr5_1:327867-327886 Msa0709190:CDS 55.0%
! AGAGAGACGGTGTTGAACGG+TGG + chr5_1:327896-327915 Msa0709190:CDS 55.0%
! GAGAGACGGTGTTGAACGGT+GGG + chr5_1:327897-327916 Msa0709190:CDS 55.0%
! AGAGACGGTGTTGAACGGTG+GGG + chr5_1:327898-327917 Msa0709190:CDS 55.0%
TGGGGTTTCTGTTTCGGAGG+TGG + chr5_1:327916-327935 Msa0709190:CDS 55.0%
CTCGGAGGACACTACAGTAC+AGG - chr5_1:328935-328954 None:intergenic 55.0%
CTGTACTGTAGTGTCCTCCG+AGG + chr5_1:328933-328952 Msa0709190:intron 55.0%
GGAGCTGGGGGAAGTTCAAA+AGG + chr5_1:329270-329289 Msa0709190:CDS 55.0%
GGAAGTGAAACGGTGGGGTG+TGG - chr5_1:327624-327643 None:intergenic 60.0%
GGAGTTGGAGTGGACGGTGT+AGG - chr5_1:327645-327664 None:intergenic 60.0%
GGGGAAGGAGTTGGAGTGGA+CGG - chr5_1:327651-327670 None:intergenic 60.0%
CCGTCGCCGTGACTGCAATT+TGG + chr5_1:327768-327787 Msa0709190:CDS 60.0%
CGGTGGGGTTTCTGTTTCGG+AGG + chr5_1:327913-327932 Msa0709190:CDS 60.0%
GGCTAATGCTCTTGCGGCCT+CGG - chr5_1:329227-329246 None:intergenic 60.0%
AGGGAGCCTCAAGTTTCCCG+TGG + chr5_1:330036-330055 Msa0709190:intron 60.0%
AGATCGGCGGGGGAAGGAGT+TGG - chr5_1:327660-327679 None:intergenic 65.0%
GGGTGTGGGTGTGCGTAGGT+GGG - chr5_1:329498-329517 None:intergenic 65.0%
TGGGTGTGGGTGTGCGTAGG+TGG - chr5_1:329499-329518 None:intergenic 65.0%
GTGTGGGTGTGGGTGTGCGT+AGG - chr5_1:329502-329521 None:intergenic 65.0%
GGCGGGGGAAGGAGTTGGAG+TGG - chr5_1:327655-327674 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 327343 330291 327343 ID=Msa0709190;Name=Msa0709190
chr5_1 mRNA 327343 330291 327343 ID=Msa0709190-mRNA-1;Parent=Msa0709190;Name=Msa0709190-mRNA-1;_AED=0.19;_eAED=0.19;_QI=163|0.2|0.33|0.66|1|1|6|0|340
chr5_1 exon 327343 328078 327343 ID=Msa0709190-mRNA-1:exon:74;Parent=Msa0709190-mRNA-1
chr5_1 exon 328726 328794 328726 ID=Msa0709190-mRNA-1:exon:75;Parent=Msa0709190-mRNA-1
chr5_1 exon 328899 328934 328899 ID=Msa0709190-mRNA-1:exon:76;Parent=Msa0709190-mRNA-1
chr5_1 exon 329199 329309 329199 ID=Msa0709190-mRNA-1:exon:77;Parent=Msa0709190-mRNA-1
chr5_1 exon 329718 329849 329718 ID=Msa0709190-mRNA-1:exon:78;Parent=Msa0709190-mRNA-1
chr5_1 exon 330190 330291 330190 ID=Msa0709190-mRNA-1:exon:79;Parent=Msa0709190-mRNA-1
chr5_1 five_prime_UTR 327343 327505 327343 ID=Msa0709190-mRNA-1:five_prime_utr;Parent=Msa0709190-mRNA-1
chr5_1 CDS 327506 328078 327506 ID=Msa0709190-mRNA-1:cds;Parent=Msa0709190-mRNA-1
chr5_1 CDS 328726 328794 328726 ID=Msa0709190-mRNA-1:cds;Parent=Msa0709190-mRNA-1
chr5_1 CDS 328899 328934 328899 ID=Msa0709190-mRNA-1:cds;Parent=Msa0709190-mRNA-1
chr5_1 CDS 329199 329309 329199 ID=Msa0709190-mRNA-1:cds;Parent=Msa0709190-mRNA-1
chr5_1 CDS 329718 329849 329718 ID=Msa0709190-mRNA-1:cds;Parent=Msa0709190-mRNA-1
chr5_1 CDS 330190 330291 330190 ID=Msa0709190-mRNA-1:cds;Parent=Msa0709190-mRNA-1
Gene Sequence

>Msa0709190

ATGTTACTCACTTGCCATCATCACCATTTCACGCATTCACCTTTTTCTTCAACTCCTCATTCACTCTTACGTCCTCTTCATCTCAATACTCCAATCCTCAGCCTCAAACCACTTTCCACACCCCACCGTTTCACTTCCTACACCGTCCACTCCAACTCCTTCCCCCGCCGATCTCAAATTTCCGTCGCCGATTCCAATTTTGATTCCTTCCTTTCCTTCCTCGAACTCTCCGCTCTTCTCTCTTCCCTCATCGTATCTTTCACCGTCGCCGTGACTGCAATTTGGAAGAAGGAGTTATATCTTGCTATCGGTAACAGAGTTGCTCCGTGGAGTTTGTTGTTTTTGGTGGTTGGTGTTTTGACTGGTGCGGTGATTAGGAGAAGGAAATGGAGAGAGACGGTGTTGAACGGTGGGGTTTCTGTTTCGGAGGTGGAATTTTTGCAGAGAATTGAGAAATTGGAGGAGGATTTGAAGAGTAATGCGACGGTTGTTAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATTAGGTTTCGTGTTACCAGGAAGGGTTTGAAGGAACCTATAACTGAGGTTTTGGGTGGAAATGACATTGGAAAACAGTCTATCTTTGAAACAAAGTATGAGGTTTCAAGAAGGAAGGAGCATGAAGCAAAAACTCTCCGAGATGTAGATCCTACTGCAGCTCTGGCACAGAAGAATTCCGAGGCCGCAAGAGCATTAGCCCTGCAATCAGACATTTTGGAGAAGGAGCTGGGGGAAGTTCAAAAGGTTTTGCTAGCAATGCAGGAACAACAGCAAAAACAACTTGATCTCATTCTTGCAATTGCGAAGGCAGGTAAGCTATGGGAAAGCAAGCCTGAAACTAGTGAAGAACACGGTACAATAGATATGTCTAACTCAGCTGCGAATCTCAATGCGGATTACAAGGCACTCATCATCAATTTGTCACAGTTCACGTCTTTCCTTAGTTTTGCTGTAACAAAAACAGATGAATATGCATTGGTGTGGTACATACTTTAG

Protein sequence

>Msa0709190

MLLTCHHHHFTHSPFSSTPHSLLRPLHLNTPILSLKPLSTPHRFTSYTVHSNSFPRRSQISVADSNFDSFLSFLELSALLSSLIVSFTVAVTAIWKKELYLAIGNRVAPWSLLFLVVGVLTGAVIRRRKWRETVLNGGVSVSEVEFLQRIEKLEEDLKSNATVVRVLSRQLEKLGIRFRVTRKGLKEPITEVLGGNDIGKQSIFETKYEVSRRKEHEAKTLRDVDPTAALAQKNSEAARALALQSDILEKELGEVQKVLLAMQEQQQKQLDLILAIAKAGKLWESKPETSEEHGTIDMSNSAANLNADYKALIINLSQFTSFLSFAVTKTDEYALVWYIL*