AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1132520


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132520 MtrunA17_Chr8g0381861 76.176 319 25 3 1 306 1 281 8.49e-142 402
Msa1132520 MtrunA17_Chr3g0123831 46.809 235 78 5 66 296 73 264 8.62e-45 154
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1132520 AT5G65250.1 47.489 219 75 3 66 284 93 271 2.50e-49 167

Find 92 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCTAGGCAGCTTGAGAAAT+TGG 0.177372 7_3:+85384452 Msa1132520:CDS
CTTTGACCATGGCTTCATTC+AGG 0.224855 7_3:-85383821 None:intergenic
AGCCCTGCAATCAGACATTT+TGG 0.237492 7_3:+85385689 Msa1132520:CDS
AATTTGAAAGTGTGACTATT+TGG 0.238960 7_3:-85383919 None:intergenic
TCATTCAGGCTTCTTCTGTT+TGG 0.240961 7_3:-85383807 None:intergenic
CATTCAGGCTTCTTCTGTTT+GGG 0.241140 7_3:-85383806 None:intergenic
CCGTGTTCTTCACTAGTTTC+AGG 0.242419 7_3:-85386233 None:intergenic
TTTGCAGAGAATTGAGAAAT+TGG 0.262448 7_3:+85384389 Msa1132520:CDS
GTAGTAATTACCTCAGTTAT+AGG 0.273196 7_3:-85384513 None:intergenic
GGAAAGGAAGGAATCAAAAT+TGG 0.279238 7_3:-85384145 None:intergenic
GGCTAATGCTCTTGCGGCCT+CGG 0.289526 7_3:-85385670 None:intergenic
GAACGGTGGGGTTTCTGTTT+CGG 0.293881 7_3:+85384356 Msa1132520:CDS
CCGTCGCCGTGACTGCAATT+TGG 0.295008 7_3:+85384214 Msa1132520:CDS
AGTAGAAGAAAGAACATTAC+TGG 0.332304 7_3:-85383879 None:intergenic
AGAGTAATGCGACGGTTGTT+AGG 0.336551 7_3:+85384424 Msa1132520:CDS
AGCTTGAGAAATTGGGGATT+AGG 0.351998 7_3:+85384460 Msa1132520:CDS
TCTAGGCAGCTTGAGAAATT+GGG 0.354881 7_3:+85384453 Msa1132520:CDS
TCTCCAAAATGTCTGATTGC+AGG 0.356336 7_3:-85385692 None:intergenic
AGGTTCCTTCAAACCCTTCC+TGG 0.363702 7_3:-85384493 None:intergenic
GAATGAGGAGTTGAAGAAAA+AGG 0.364028 7_3:-85383991 None:intergenic
TGGGGTTTCTGTTTCGGAGG+TGG 0.403058 7_3:+85384362 Msa1132520:CDS
TTGAATGAAGACTGCAGCTC+TGG 0.409148 7_3:+85385635 Msa1132520:intron
TATCTTTGAAACAAAGTATG+AGG 0.415913 7_3:+85385204 Msa1132520:CDS
TGGAAAGTGGTTTGAGGCTG+AGG 0.435164 7_3:-85384047 None:intergenic
AGAGAAGAGCGGAGAGTTCG+AGG 0.448141 7_3:-85384170 None:intergenic
ATTTGAAAGTGTGACTATTT+GGG 0.448187 7_3:-85383918 None:intergenic
GAGTAATGCGACGGTTGTTA+GGG 0.448272 7_3:+85384425 Msa1132520:CDS
GACGGAAATTTGAGATCGGC+GGG 0.467109 7_3:-85384115 None:intergenic
GCAGAGAATTGAGAAATTGG+AGG 0.472739 7_3:+85384392 Msa1132520:CDS
GGAAGTGAAACGGTGGGGTG+TGG 0.478399 7_3:-85384067 None:intergenic
TTGCGAAGGCAGGTAAGCTA+TGG 0.479688 7_3:+85386201 Msa1132520:CDS
AGTGGTTTGAGGCTGAGGAT+TGG 0.483125 7_3:-85384042 None:intergenic
GAAGGAATCAAAATTGGAAT+CGG 0.487467 7_3:-85384139 None:intergenic
AAACGGTGGGGTGTGGAAAG+TGG 0.487596 7_3:-85384060 None:intergenic
AGAGGACGTAAGAGTGAATG+AGG 0.489716 7_3:-85384006 None:intergenic
CGGTGATTAGGAGAAGGAAA+TGG 0.490410 7_3:+85384319 Msa1132520:CDS
GGATTAGGTTTCGTGTTACC+AGG 0.498013 7_3:+85384475 Msa1132520:CDS
ATTCTTGCAATTGCGAAGGC+AGG 0.502036 7_3:+85386191 Msa1132520:CDS
CGGAGAGTTCGAGGAAGGAA+AGG 0.506937 7_3:-85384161 None:intergenic
GAGAATTGAGAAATTGGAGG+AGG 0.507588 7_3:+85384395 Msa1132520:CDS
TGTTACCAGGAAGGGTTTGA+AGG 0.509421 7_3:+85384488 Msa1132520:CDS
GGAGTTGGAGTGGACGGTGT+AGG 0.511955 7_3:-85384088 None:intergenic
CGTGACTGCAATTTGGAAGA+AGG 0.512903 7_3:+85384221 Msa1132520:CDS
ATTGGAGTATTGAGATGAAG+AGG 0.520273 7_3:-85384024 None:intergenic
CTCCAAAATGTCTGATTGCA+GGG 0.525218 7_3:-85385691 None:intergenic
CGGAAATTTGAGATCGGCGG+GGG 0.525952 7_3:-85384113 None:intergenic
ACTTTCATTTCAGGATTACA+AGG 0.527608 7_3:+85386623 Msa1132520:intron
ATCAAAATTGGAATCGGCGA+CGG 0.530085 7_3:-85384133 None:intergenic
TTCTTCTGTTTGGGTGACAA+AGG 0.530173 7_3:-85383797 None:intergenic
CTTCTTCCAAATTGCAGTCA+CGG 0.532215 7_3:-85384220 None:intergenic
GGGGAAGGAGTTGGAGTGGA+CGG 0.535310 7_3:-85384094 None:intergenic
CTAGGCAGCTTGAGAAATTG+GGG 0.538326 7_3:+85384454 Msa1132520:CDS
CGGTGGGGTTTCTGTTTCGG+AGG 0.539820 7_3:+85384359 Msa1132520:CDS
AGGTTTCGTGTTACCAGGAA+GGG 0.543976 7_3:+85384480 Msa1132520:CDS
GAGAGACGGTGTTGAACGGT+GGG 0.546933 7_3:+85384343 Msa1132520:CDS
GAGAAGGAAATGGAGAGAGA+CGG 0.562581 7_3:+85384329 Msa1132520:CDS
TGGCAAGTGAGTAACATTGT+TGG 0.564961 7_3:-85383946 None:intergenic
TTTGAAGGAACCTATAACTG+AGG 0.565016 7_3:+85384503 Msa1132520:CDS
AAGAGCGGAGAGTTCGAGGA+AGG 0.566579 7_3:-85384166 None:intergenic
TAGGTTTCGTGTTACCAGGA+AGG 0.568467 7_3:+85384479 Msa1132520:CDS
GAGTTCGAGGAAGGAAAGGA+AGG 0.569587 7_3:-85384157 None:intergenic
AATGCGTGAAATGGTGATGA+TGG 0.584311 7_3:-85383966 None:intergenic
TGGAGAGAGACGGTGTTGAA+CGG 0.589136 7_3:+85384339 Msa1132520:CDS
GTATGAGGTTTCAAGAAGGA+AGG 0.589263 7_3:+85385219 Msa1132520:CDS
GGACGGTGTAGGAAGTGAAA+CGG 0.592277 7_3:-85384077 None:intergenic
TGCGAAGGCAGGTAAGCTAT+GGG 0.592521 7_3:+85386202 Msa1132520:CDS
AAGGAGTTATATCTTGCTAT+CGG 0.595941 7_3:+85384240 Msa1132520:CDS
CGACGGAAATTTGAGATCGG+CGG 0.599042 7_3:-85384116 None:intergenic
CTGGTGCGGTGATTAGGAGA+AGG 0.610719 7_3:+85384313 Msa1132520:CDS
GGTGTAGGAAGTGAAACGGT+GGG 0.613998 7_3:-85384073 None:intergenic
CGGCGACGGAAATTTGAGAT+CGG 0.614058 7_3:-85384119 None:intergenic
CCAAATTGCAGTCACGGCGA+CGG 0.616365 7_3:-85384214 None:intergenic
GGGGTGTGGAAAGTGGTTTG+AGG 0.618981 7_3:-85384053 None:intergenic
TTGCAGGGCTAATGCTCTTG+CGG 0.622054 7_3:-85385676 None:intergenic
AAGAAGCCTGAATGAAGCCA+TGG 0.626541 7_3:+85383815 Msa1132520:five_prime_UTR
CAAAGTATGAGGTTTCAAGA+AGG 0.626591 7_3:+85385215 Msa1132520:CDS
GGATTTGAAGAGTAATGCGA+CGG 0.629644 7_3:+85384416 Msa1132520:CDS
ACAGTACAGGATCTACATCT+CGG 0.634582 7_3:-85385365 None:intergenic
GACGGTGAAAGATACGATGA+GGG 0.637410 7_3:-85384196 None:intergenic
CGACGGTGAAAGATACGATG+AGG 0.643423 7_3:-85384197 None:intergenic
TCTCATTCTTGCAATTGCGA+AGG 0.648334 7_3:+85386187 Msa1132520:CDS
AGAGAGACGGTGTTGAACGG+TGG 0.648405 7_3:+85384342 Msa1132520:CDS
CGGTGTAGGAAGTGAAACGG+TGG 0.657647 7_3:-85384074 None:intergenic
AGAGACGGTGTTGAACGGTG+GGG 0.693868 7_3:+85384344 Msa1132520:CDS
TCGGTAACAGAGTTGCTCCG+TGG 0.696566 7_3:+85384259 Msa1132520:CDS
CCTGAAACTAGTGAAGAACA+CGG 0.696745 7_3:+85386233 Msa1132520:CDS
GATGAGGGAAGAGAGAAGAG+CGG 0.709448 7_3:-85384181 None:intergenic
CAGATGAATATGCATTGGTG+TGG 0.711307 7_3:+85386703 Msa1132520:CDS
TCTGGCACAGAAGAATTCCG+AGG 0.724089 7_3:+85385653 Msa1132520:CDS
CTCAGCTGCGAATCTCAATG+CGG 0.734213 7_3:+85386274 Msa1132520:CDS
GTGTAGGAAGTGAAACGGTG+GGG 0.736083 7_3:-85384072 None:intergenic
ACGGAAATTTGAGATCGGCG+GGG 0.740613 7_3:-85384114 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ACATTTCATAATAAACTTTA+TGG - chr7_3:85384600-85384619 None:intergenic 15.0%
!! TATTCTATCTAATATTCAAT+AGG - chr7_3:85384857-85384876 None:intergenic 15.0%
!! TATTGAATATTAGATAGAAT+AGG + chr7_3:85384856-85384875 Msa1132520:intron 15.0%
!!! AGTAAGTTGAACAATAAATT+GGG - chr7_3:85384715-85384734 None:intergenic 20.0%
!!! AAGTAAGTTGAACAATAAAT+TGG - chr7_3:85384716-85384735 None:intergenic 20.0%
!!! TTTAGTATAGTTTTTACCAA+TGG + chr7_3:85384825-85384844 Msa1132520:intron 20.0%
!!! ATTTTGTTATTTGAACAAGT+CGG - chr7_3:85384927-85384946 None:intergenic 20.0%
!!! AGTTTGTTATTGAACTTTAA+AGG + chr7_3:85385825-85385844 Msa1132520:intron 20.0%
!!! TTAAAGGTAACATTATTTTG+TGG + chr7_3:85385841-85385860 Msa1132520:intron 20.0%
!! TAATGATTACACATTTACTA+AGG + chr7_3:85386462-85386481 Msa1132520:intron 20.0%
!! AATGATTACACATTTACTAA+GGG + chr7_3:85386463-85386482 Msa1132520:intron 20.0%
!! ATTTGAAAGTGTGACTATTT+GGG - chr7_3:85383921-85383940 None:intergenic 25.0%
!! AATTTGAAAGTGTGACTATT+TGG - chr7_3:85383922-85383941 None:intergenic 25.0%
!! TAAGTTGGAATATATTCAAG+AGG - chr7_3:85384651-85384670 None:intergenic 25.0%
!!! ATTCAAATAAAGCTCTAAGT+TGG - chr7_3:85384666-85384685 None:intergenic 25.0%
!!! TATCTTTGAAACAAAGTATG+AGG + chr7_3:85385204-85385223 Msa1132520:CDS 25.0%
! TTTATGTGCCAATAAAATTC+TGG - chr7_3:85386442-85386461 None:intergenic 25.0%
! TGTTCATTTACTTTCATTTC+AGG + chr7_3:85386614-85386633 Msa1132520:intron 25.0%
!! TTTTTGTTACAGCAAAACTA+AGG - chr7_3:85386683-85386702 None:intergenic 25.0%
! AAAAACAGATGAATATGCAT+TGG + chr7_3:85386698-85386717 Msa1132520:CDS 25.0%
AGTAGAAGAAAGAACATTAC+TGG - chr7_3:85383882-85383901 None:intergenic 30.0%
GAAGGAATCAAAATTGGAAT+CGG - chr7_3:85384142-85384161 None:intergenic 30.0%
! AAGGAGTTATATCTTGCTAT+CGG + chr7_3:85384240-85384259 Msa1132520:CDS 30.0%
TTTGCAGAGAATTGAGAAAT+TGG + chr7_3:85384389-85384408 Msa1132520:CDS 30.0%
GTAGTAATTACCTCAGTTAT+AGG - chr7_3:85384516-85384535 None:intergenic 30.0%
! ATTCAATAGGTCTTTTCCAT+TGG - chr7_3:85384844-85384863 None:intergenic 30.0%
! CCAGATTGAGTCAATTTTTA+GGG - chr7_3:85385319-85385338 None:intergenic 30.0%
! ACCAGATTGAGTCAATTTTT+AGG - chr7_3:85385320-85385339 None:intergenic 30.0%
TTCCAGTAATATGAATTCCT+CGG - chr7_3:85385399-85385418 None:intergenic 30.0%
!! TCATTAACATTTTGAGTGTC+TGG + chr7_3:85385535-85385554 Msa1132520:intron 30.0%
GGAGTTTAAGTAACATTGAA+GGG - chr7_3:85385767-85385786 None:intergenic 30.0%
AAACTGGAATACTAGATTCA+TGG - chr7_3:85386024-85386043 None:intergenic 30.0%
TTTAACCCAAGCTTCAAATT+TGG - chr7_3:85386316-85386335 None:intergenic 30.0%
GAAAACCATCAAATTACAGA+GGG + chr7_3:85386341-85386360 Msa1132520:intron 30.0%
! CAAAGTAGCCAGAATTTTAT+TGG + chr7_3:85386431-85386450 Msa1132520:intron 30.0%
ACTTTCATTTCAGGATTACA+AGG + chr7_3:85386623-85386642 Msa1132520:intron 30.0%
AAAAAGGTGAATGCGTGAAA+TGG - chr7_3:85383978-85383997 None:intergenic 35.0%
GAATGAGGAGTTGAAGAAAA+AGG - chr7_3:85383994-85384013 None:intergenic 35.0%
!! ATTGGAGTATTGAGATGAAG+AGG - chr7_3:85384027-85384046 None:intergenic 35.0%
GGAAAGGAAGGAATCAAAAT+TGG - chr7_3:85384148-85384167 None:intergenic 35.0%
ACCAAAAACAACAAACTCCA+CGG - chr7_3:85384279-85384298 None:intergenic 35.0%
!!! AGTTTGTTGTTTTTGGTGGT+TGG + chr7_3:85384282-85384301 Msa1132520:CDS 35.0%
TTTGAAGGAACCTATAACTG+AGG + chr7_3:85384503-85384522 Msa1132520:CDS 35.0%
GGAAGAAAAAAACAGGAATG+TGG + chr7_3:85385008-85385027 Msa1132520:intron 35.0%
! TTGCAAGAAAATGCAGGTTT+TGG + chr7_3:85385156-85385175 Msa1132520:intron 35.0%
! TGCAAGAAAATGCAGGTTTT+GGG + chr7_3:85385157-85385176 Msa1132520:intron 35.0%
CAAAGTATGAGGTTTCAAGA+AGG + chr7_3:85385215-85385234 Msa1132520:CDS 35.0%
AGGTCAGAAAACAATGAAAC+TGG + chr7_3:85385239-85385258 Msa1132520:intron 35.0%
GGTCAGAAAACAATGAAACT+GGG + chr7_3:85385240-85385259 Msa1132520:intron 35.0%
GTCAGAAAACAATGAAACTG+GGG + chr7_3:85385241-85385260 Msa1132520:intron 35.0%
! CCCTAAAAATTGACTCAATC+TGG + chr7_3:85385316-85385335 Msa1132520:intron 35.0%
CGGAGTTTAAGTAACATTGA+AGG - chr7_3:85385768-85385787 None:intergenic 35.0%
AAATCTCTAGTCTGACGTAT+GGG - chr7_3:85386050-85386069 None:intergenic 35.0%
AAAATCTCTAGTCTGACGTA+TGG - chr7_3:85386051-85386070 None:intergenic 35.0%
! TCGAGTTTGACTTATCTTGA+TGG + chr7_3:85386122-85386141 Msa1132520:intron 35.0%
TGGTGTTTGATCATTCATGT+AGG + chr7_3:85386142-85386161 Msa1132520:intron 35.0%
TTGAAGCTTGGGTTAAACTA+AGG + chr7_3:85386319-85386338 Msa1132520:intron 35.0%
GGAAAACCATCAAATTACAG+AGG + chr7_3:85386340-85386359 Msa1132520:intron 35.0%
TTCATCCCTCTGTAATTTGA+TGG - chr7_3:85386349-85386368 None:intergenic 35.0%
! ACTTTGACTTTGTGTGTAGA+TGG - chr7_3:85386417-85386436 None:intergenic 35.0%
TTACTCAACGAGTCAATTCA+AGG + chr7_3:85386522-85386541 Msa1132520:intron 35.0%
!! TCTGGTTCTGTGGTAAATTT+CGG + chr7_3:85386566-85386585 Msa1132520:intron 35.0%
TTCTTCTGTTTGGGTGACAA+AGG - chr7_3:85383800-85383819 None:intergenic 40.0%
CATTCAGGCTTCTTCTGTTT+GGG - chr7_3:85383809-85383828 None:intergenic 40.0%
TCATTCAGGCTTCTTCTGTT+TGG - chr7_3:85383810-85383829 None:intergenic 40.0%
! TTTTCAGCTCTCTTTGACCA+TGG - chr7_3:85383835-85383854 None:intergenic 40.0%
TGGCAAGTGAGTAACATTGT+TGG - chr7_3:85383949-85383968 None:intergenic 40.0%
! AATGCGTGAAATGGTGATGA+TGG - chr7_3:85383969-85383988 None:intergenic 40.0%
ATCAAAATTGGAATCGGCGA+CGG - chr7_3:85384136-85384155 None:intergenic 40.0%
CTTCTTCCAAATTGCAGTCA+CGG - chr7_3:85384223-85384242 None:intergenic 40.0%
!!! TCCGTGGAGTTTGTTGTTTT+TGG + chr7_3:85384275-85384294 Msa1132520:CDS 40.0%
!!! GTGGAGTTTGTTGTTTTTGG+TGG + chr7_3:85384278-85384297 Msa1132520:CDS 40.0%
GCAGAGAATTGAGAAATTGG+AGG + chr7_3:85384392-85384411 Msa1132520:CDS 40.0%
GAGAATTGAGAAATTGGAGG+AGG + chr7_3:85384395-85384414 Msa1132520:CDS 40.0%
GGATTTGAAGAGTAATGCGA+CGG + chr7_3:85384416-85384435 Msa1132520:CDS 40.0%
TCTAGGCAGCTTGAGAAATT+GGG + chr7_3:85384453-85384472 Msa1132520:CDS 40.0%
AGCTTGAGAAATTGGGGATT+AGG + chr7_3:85384460-85384479 Msa1132520:CDS 40.0%
!! GAGAGTTTGTTAGAACACAG+CGG + chr7_3:85384986-85385005 Msa1132520:intron 40.0%
!! AGAGTTTGTTAGAACACAGC+GGG + chr7_3:85384987-85385006 Msa1132520:intron 40.0%
GTGGAATCTGAGCAAAAGAT+AGG + chr7_3:85385027-85385046 Msa1132520:intron 40.0%
ATGAGCTTGCAAGAAAATGC+AGG + chr7_3:85385150-85385169 Msa1132520:intron 40.0%
!!! AAGAAAATGCAGGTTTTGGG+TGG + chr7_3:85385160-85385179 Msa1132520:intron 40.0%
!! GTTTTGGGTGGAAATGACAT+TGG + chr7_3:85385172-85385191 Msa1132520:CDS 40.0%
GTATGAGGTTTCAAGAAGGA+AGG + chr7_3:85385219-85385238 Msa1132520:CDS 40.0%
! AGTGGCTGCTTTCATGAAAT+GGG - chr7_3:85385282-85385301 None:intergenic 40.0%
! TAGTGGCTGCTTTCATGAAA+TGG - chr7_3:85385283-85385302 None:intergenic 40.0%
! AATTGACTCAATCTGGTTGC+AGG + chr7_3:85385323-85385342 Msa1132520:intron 40.0%
ACAGTACAGGATCTACATCT+CGG - chr7_3:85385368-85385387 None:intergenic 40.0%
CAGTAATATGAATTCCTCGG+AGG - chr7_3:85385396-85385415 None:intergenic 40.0%
CTCCGAGGAATTCATATTAC+TGG + chr7_3:85385394-85385413 Msa1132520:intron 40.0%
!! CATTTTGAGTGTCTGGTTGA+AGG + chr7_3:85385542-85385561 Msa1132520:intron 40.0%
CTCCAAAATGTCTGATTGCA+GGG - chr7_3:85385694-85385713 None:intergenic 40.0%
TCTCCAAAATGTCTGATTGC+AGG - chr7_3:85385695-85385714 None:intergenic 40.0%
!! GCAATCAGACATTTTGGAGA+AGG + chr7_3:85385695-85385714 Msa1132520:CDS 40.0%
! AAAGGTTTTGCTAGCAATGC+AGG + chr7_3:85385734-85385753 Msa1132520:CDS 40.0%
!! AAAGAGTGCTTGCTCTTTCA+CGG - chr7_3:85385788-85385807 None:intergenic 40.0%
!! AACACTTTAGCTCTCATGTG+CGG + chr7_3:85385881-85385900 Msa1132520:intron 40.0%
CACATCATTGTGTTGTGTGT+GGG - chr7_3:85385964-85385983 None:intergenic 40.0%
TCACATCATTGTGTTGTGTG+TGG - chr7_3:85385965-85385984 None:intergenic 40.0%
GGAATACTAGATTCATGGTC+TGG - chr7_3:85386019-85386038 None:intergenic 40.0%
TCTGACGTATGGGTTTAAAC+TGG - chr7_3:85386040-85386059 None:intergenic 40.0%
TCTCATTCTTGCAATTGCGA+AGG + chr7_3:85386187-85386206 Msa1132520:CDS 40.0%
CCTGAAACTAGTGAAGAACA+CGG + chr7_3:85386233-85386252 Msa1132520:CDS 40.0%
GAATCTCAATGCGGTAAATC+AGG + chr7_3:85386283-85386302 Msa1132520:intron 40.0%
! GTCCACCAAATTTGAAGCTT+GGG + chr7_3:85386308-85386327 Msa1132520:intron 40.0%
AACCCAAGCTTCAAATTTGG+TGG - chr7_3:85386313-85386332 None:intergenic 40.0%
! TTTTTCCCCATCTGTATCCA+CGG - chr7_3:85386502-85386521 None:intergenic 40.0%
TCAACGAGTCAATTCAAGGA+GGG + chr7_3:85386526-85386545 Msa1132520:intron 40.0%
!! CTGGTTCTGTGGTAAATTTC+GGG + chr7_3:85386567-85386586 Msa1132520:intron 40.0%
! CAGATGAATATGCATTGGTG+TGG + chr7_3:85386703-85386722 Msa1132520:CDS 40.0%
AAGAAGCCTGAATGAAGCCA+TGG + chr7_3:85383815-85383834 Msa1132520:five_prime_UTR 45.0%
CTTTGACCATGGCTTCATTC+AGG - chr7_3:85383824-85383843 None:intergenic 45.0%
AGAGGACGTAAGAGTGAATG+AGG - chr7_3:85384009-85384028 None:intergenic 45.0%
GACGGTGAAAGATACGATGA+GGG - chr7_3:85384199-85384218 None:intergenic 45.0%
CGTGACTGCAATTTGGAAGA+AGG + chr7_3:85384221-85384240 Msa1132520:CDS 45.0%
!!! TTGGTGGTTGGTGTTTTGAC+TGG + chr7_3:85384294-85384313 Msa1132520:CDS 45.0%
!! TTTTGACTGGTGCGGTGATT+AGG + chr7_3:85384307-85384326 Msa1132520:CDS 45.0%
CGGTGATTAGGAGAAGGAAA+TGG + chr7_3:85384319-85384338 Msa1132520:CDS 45.0%
GAGAAGGAAATGGAGAGAGA+CGG + chr7_3:85384329-85384348 Msa1132520:CDS 45.0%
AGAGTAATGCGACGGTTGTT+AGG + chr7_3:85384424-85384443 Msa1132520:CDS 45.0%
GAGTAATGCGACGGTTGTTA+GGG + chr7_3:85384425-85384444 Msa1132520:CDS 45.0%
!! CGGTTGTTAGGGTTTTGTCT+AGG + chr7_3:85384436-85384455 Msa1132520:CDS 45.0%
GTCTAGGCAGCTTGAGAAAT+TGG + chr7_3:85384452-85384471 Msa1132520:CDS 45.0%
CTAGGCAGCTTGAGAAATTG+GGG + chr7_3:85384454-85384473 Msa1132520:CDS 45.0%
GGATTAGGTTTCGTGTTACC+AGG + chr7_3:85384475-85384494 Msa1132520:CDS 45.0%
TAGGTTTCGTGTTACCAGGA+AGG + chr7_3:85384479-85384498 Msa1132520:CDS 45.0%
AGGTTTCGTGTTACCAGGAA+GGG + chr7_3:85384480-85384499 Msa1132520:CDS 45.0%
TGTTACCAGGAAGGGTTTGA+AGG + chr7_3:85384488-85384507 Msa1132520:CDS 45.0%
CACAGCGGGAAGAAAAAAAC+AGG + chr7_3:85385001-85385020 Msa1132520:intron 45.0%
! TGGCTGCTTTCATGAAATGG+GGG - chr7_3:85385280-85385299 None:intergenic 45.0%
! GTGGCTGCTTTCATGAAATG+GGG - chr7_3:85385281-85385300 None:intergenic 45.0%
AGGGAGATTCACAGTTGTAG+TGG - chr7_3:85385300-85385319 None:intergenic 45.0%
TTGAATGAAGACTGCAGCTC+TGG + chr7_3:85385635-85385654 Msa1132520:intron 45.0%
! AGCCCTGCAATCAGACATTT+TGG + chr7_3:85385689-85385708 Msa1132520:CDS 45.0%
!! AGACATTTTGGAGAAGGAGC+TGG + chr7_3:85385701-85385720 Msa1132520:CDS 45.0%
!! GACATTTTGGAGAAGGAGCT+GGG + chr7_3:85385702-85385721 Msa1132520:CDS 45.0%
!! ACATTTTGGAGAAGGAGCTG+GGG + chr7_3:85385703-85385722 Msa1132520:CDS 45.0%
ATTGTGTTGTGTGTGGGTGT+GGG - chr7_3:85385958-85385977 None:intergenic 45.0%
ATTCTTGCAATTGCGAAGGC+AGG + chr7_3:85386191-85386210 Msa1132520:CDS 45.0%
! CCGTGTTCTTCACTAGTTTC+AGG - chr7_3:85386236-85386255 None:intergenic 45.0%
TCTCAATGCGGTAAATCAGG+AGG + chr7_3:85386286-85386305 Msa1132520:intron 45.0%
! GGTCCACCAAATTTGAAGCT+TGG + chr7_3:85386307-85386326 Msa1132520:intron 45.0%
AAGTTTCCCGTGGATACAGA+TGG + chr7_3:85386492-85386511 Msa1132520:intron 45.0%
AGTTTCCCGTGGATACAGAT+GGG + chr7_3:85386493-85386512 Msa1132520:intron 45.0%
! TTTTCCCCATCTGTATCCAC+GGG - chr7_3:85386501-85386520 None:intergenic 45.0%
CTCAACGAGTCAATTCAAGG+AGG + chr7_3:85386525-85386544 Msa1132520:intron 45.0%
CAACGAGTCAATTCAAGGAG+GGG + chr7_3:85386527-85386546 Msa1132520:intron 45.0%
GGAGAATTGTCTGAACTCTC+TGG + chr7_3:85386548-85386567 Msa1132520:intron 45.0%
! AGTGGTTTGAGGCTGAGGAT+TGG - chr7_3:85384045-85384064 None:intergenic 50.0%
! TGGAAAGTGGTTTGAGGCTG+AGG - chr7_3:85384050-85384069 None:intergenic 50.0%
GTGTAGGAAGTGAAACGGTG+GGG - chr7_3:85384075-85384094 None:intergenic 50.0%
GGTGTAGGAAGTGAAACGGT+GGG - chr7_3:85384076-85384095 None:intergenic 50.0%
GGACGGTGTAGGAAGTGAAA+CGG - chr7_3:85384080-85384099 None:intergenic 50.0%
! ACGGAAATTTGAGATCGGCG+GGG - chr7_3:85384117-85384136 None:intergenic 50.0%
! GACGGAAATTTGAGATCGGC+GGG - chr7_3:85384118-85384137 None:intergenic 50.0%
! CGACGGAAATTTGAGATCGG+CGG - chr7_3:85384119-85384138 None:intergenic 50.0%
! CGGCGACGGAAATTTGAGAT+CGG - chr7_3:85384122-85384141 None:intergenic 50.0%
GAGTTCGAGGAAGGAAAGGA+AGG - chr7_3:85384160-85384179 None:intergenic 50.0%
GATGAGGGAAGAGAGAAGAG+CGG - chr7_3:85384184-85384203 None:intergenic 50.0%
CGACGGTGAAAGATACGATG+AGG - chr7_3:85384200-85384219 None:intergenic 50.0%
!!! GGTTGGTGTTTTGACTGGTG+CGG + chr7_3:85384299-85384318 Msa1132520:CDS 50.0%
! TGGAGAGAGACGGTGTTGAA+CGG + chr7_3:85384339-85384358 Msa1132520:CDS 50.0%
GAACGGTGGGGTTTCTGTTT+CGG + chr7_3:85384356-85384375 Msa1132520:CDS 50.0%
AGGTTCCTTCAAACCCTTCC+TGG - chr7_3:85384496-85384515 None:intergenic 50.0%
TCTGGCACAGAAGAATTCCG+AGG + chr7_3:85385653-85385672 Msa1132520:CDS 50.0%
TTGCAGGGCTAATGCTCTTG+CGG - chr7_3:85385679-85385698 None:intergenic 50.0%
!! CATTTTGGAGAAGGAGCTGG+GGG + chr7_3:85385704-85385723 Msa1132520:CDS 50.0%
CATTGTGTTGTGTGTGGGTG+TGG - chr7_3:85385959-85385978 None:intergenic 50.0%
TTGCGAAGGCAGGTAAGCTA+TGG + chr7_3:85386201-85386220 Msa1132520:CDS 50.0%
TGCGAAGGCAGGTAAGCTAT+GGG + chr7_3:85386202-85386221 Msa1132520:CDS 50.0%
CTCAGCTGCGAATCTCAATG+CGG + chr7_3:85386274-85386293 Msa1132520:CDS 50.0%
CTGTATCCACGGGAAACTTG+AGG - chr7_3:85386491-85386510 None:intergenic 50.0%
GTTTCCCGTGGATACAGATG+GGG + chr7_3:85386494-85386513 Msa1132520:intron 50.0%
!! GTCTGAACTCTCTGGTTCTG+TGG + chr7_3:85386556-85386575 Msa1132520:intron 50.0%
GGGGTGTGGAAAGTGGTTTG+AGG - chr7_3:85384056-85384075 None:intergenic 55.0%
AAACGGTGGGGTGTGGAAAG+TGG - chr7_3:85384063-85384082 None:intergenic 55.0%
CGGTGTAGGAAGTGAAACGG+TGG - chr7_3:85384077-85384096 None:intergenic 55.0%
! AATTTGAGATCGGCGGGGGA+AGG - chr7_3:85384112-85384131 None:intergenic 55.0%
! CGGAAATTTGAGATCGGCGG+GGG - chr7_3:85384116-85384135 None:intergenic 55.0%
CGGAGAGTTCGAGGAAGGAA+AGG - chr7_3:85384164-85384183 None:intergenic 55.0%
AAGAGCGGAGAGTTCGAGGA+AGG - chr7_3:85384169-85384188 None:intergenic 55.0%
AGAGAAGAGCGGAGAGTTCG+AGG - chr7_3:85384173-85384192 None:intergenic 55.0%
CCAAATTGCAGTCACGGCGA+CGG - chr7_3:85384217-85384236 None:intergenic 55.0%
TCGGTAACAGAGTTGCTCCG+TGG + chr7_3:85384259-85384278 Msa1132520:CDS 55.0%
CTGGTGCGGTGATTAGGAGA+AGG + chr7_3:85384313-85384332 Msa1132520:CDS 55.0%
! AGAGAGACGGTGTTGAACGG+TGG + chr7_3:85384342-85384361 Msa1132520:CDS 55.0%
! GAGAGACGGTGTTGAACGGT+GGG + chr7_3:85384343-85384362 Msa1132520:CDS 55.0%
! AGAGACGGTGTTGAACGGTG+GGG + chr7_3:85384344-85384363 Msa1132520:CDS 55.0%
TGGGGTTTCTGTTTCGGAGG+TGG + chr7_3:85384362-85384381 Msa1132520:CDS 55.0%
CTCGGAGGACACTACAGTAC+AGG - chr7_3:85385381-85385400 None:intergenic 55.0%
CTGTACTGTAGTGTCCTCCG+AGG + chr7_3:85385379-85385398 Msa1132520:intron 55.0%
GGAGCTGGGGGAAGTTCAAA+AGG + chr7_3:85385716-85385735 Msa1132520:CDS 55.0%
GGAAGTGAAACGGTGGGGTG+TGG - chr7_3:85384070-85384089 None:intergenic 60.0%
GGAGTTGGAGTGGACGGTGT+AGG - chr7_3:85384091-85384110 None:intergenic 60.0%
GGGGAAGGAGTTGGAGTGGA+CGG - chr7_3:85384097-85384116 None:intergenic 60.0%
CCGTCGCCGTGACTGCAATT+TGG + chr7_3:85384214-85384233 Msa1132520:CDS 60.0%
CGGTGGGGTTTCTGTTTCGG+AGG + chr7_3:85384359-85384378 Msa1132520:CDS 60.0%
GGCTAATGCTCTTGCGGCCT+CGG - chr7_3:85385673-85385692 None:intergenic 60.0%
AGGGAGCCTCAAGTTTCCCG+TGG + chr7_3:85386482-85386501 Msa1132520:intron 60.0%
AGATCGGCGGGGGAAGGAGT+TGG - chr7_3:85384106-85384125 None:intergenic 65.0%
GGGTGTGGGTGTGCGTAGGT+GGG - chr7_3:85385944-85385963 None:intergenic 65.0%
TGGGTGTGGGTGTGCGTAGG+TGG - chr7_3:85385945-85385964 None:intergenic 65.0%
GTGTGGGTGTGGGTGTGCGT+AGG - chr7_3:85385948-85385967 None:intergenic 65.0%
GGCGGGGGAAGGAGTTGGAG+TGG - chr7_3:85384101-85384120 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 85383789 85386737 85383789 ID=Msa1132520;Name=Msa1132520
chr7_3 mRNA 85383789 85386737 85383789 ID=Msa1132520-mRNA-1;Parent=Msa1132520;Name=Msa1132520-mRNA-1;_AED=0.19;_eAED=0.19;_QI=163|0.2|0.33|0.66|1|1|6|0|340
chr7_3 exon 85383789 85384524 85383789 ID=Msa1132520-mRNA-1:exon:25511;Parent=Msa1132520-mRNA-1
chr7_3 exon 85385172 85385240 85385172 ID=Msa1132520-mRNA-1:exon:25512;Parent=Msa1132520-mRNA-1
chr7_3 exon 85385345 85385380 85385345 ID=Msa1132520-mRNA-1:exon:25513;Parent=Msa1132520-mRNA-1
chr7_3 exon 85385645 85385755 85385645 ID=Msa1132520-mRNA-1:exon:25514;Parent=Msa1132520-mRNA-1
chr7_3 exon 85386164 85386295 85386164 ID=Msa1132520-mRNA-1:exon:25515;Parent=Msa1132520-mRNA-1
chr7_3 exon 85386636 85386737 85386636 ID=Msa1132520-mRNA-1:exon:25516;Parent=Msa1132520-mRNA-1
chr7_3 five_prime_UTR 85383789 85383951 85383789 ID=Msa1132520-mRNA-1:five_prime_utr;Parent=Msa1132520-mRNA-1
chr7_3 CDS 85383952 85384524 85383952 ID=Msa1132520-mRNA-1:cds;Parent=Msa1132520-mRNA-1
chr7_3 CDS 85385172 85385240 85385172 ID=Msa1132520-mRNA-1:cds;Parent=Msa1132520-mRNA-1
chr7_3 CDS 85385345 85385380 85385345 ID=Msa1132520-mRNA-1:cds;Parent=Msa1132520-mRNA-1
chr7_3 CDS 85385645 85385755 85385645 ID=Msa1132520-mRNA-1:cds;Parent=Msa1132520-mRNA-1
chr7_3 CDS 85386164 85386295 85386164 ID=Msa1132520-mRNA-1:cds;Parent=Msa1132520-mRNA-1
chr7_3 CDS 85386636 85386737 85386636 ID=Msa1132520-mRNA-1:cds;Parent=Msa1132520-mRNA-1
Gene Sequence

>Msa1132520

ATGTTACTCACTTGCCATCATCACCATTTCACGCATTCACCTTTTTCTTCAACTCCTCATTCACTCTTACGTCCTCTTCATCTCAATACTCCAATCCTCAGCCTCAAACCACTTTCCACACCCCACCGTTTCACTTCCTACACCGTCCACTCCAACTCCTTCCCCCGCCGATCTCAAATTTCCGTCGCCGATTCCAATTTTGATTCCTTCCTTTCCTTCCTCGAACTCTCCGCTCTTCTCTCTTCCCTCATCGTATCTTTCACCGTCGCCGTGACTGCAATTTGGAAGAAGGAGTTATATCTTGCTATCGGTAACAGAGTTGCTCCGTGGAGTTTGTTGTTTTTGGTGGTTGGTGTTTTGACTGGTGCGGTGATTAGGAGAAGGAAATGGAGAGAGACGGTGTTGAACGGTGGGGTTTCTGTTTCGGAGGTGGAATTTTTGCAGAGAATTGAGAAATTGGAGGAGGATTTGAAGAGTAATGCGACGGTTGTTAGGGTTTTGTCTAGGCAGCTTGAGAAATTGGGGATTAGGTTTCGTGTTACCAGGAAGGGTTTGAAGGAACCTATAACTGAGGTTTTGGGTGGAAATGACATTGGAAAACAGTCTATCTTTGAAACAAAGTATGAGGTTTCAAGAAGGAAGGAGCATGAAGCAAAAACTCTCCGAGATGTAGATCCTACTGCAGCTCTGGCACAGAAGAATTCCGAGGCCGCAAGAGCATTAGCCCTGCAATCAGACATTTTGGAGAAGGAGCTGGGGGAAGTTCAAAAGGTTTTGCTAGCAATGCAGGAACAACAGCAAAAACAACTTGATCTCATTCTTGCAATTGCGAAGGCAGGTAAGCTATGGGAAAGCAAGCCTGAAACTAGTGAAGAACACGGTACAATAGATATGTCTAACTCAGCTGCGAATCTCAATGCGGATTACAAGGCACTCATCATCAATTTGTCACAGTTCACGTCTTTCCTTAGTTTTGCTGTAACAAAAACAGATGAATATGCATTGGTGTGGTACATACTTTAG

Protein sequence

>Msa1132520

MLLTCHHHHFTHSPFSSTPHSLLRPLHLNTPILSLKPLSTPHRFTSYTVHSNSFPRRSQISVADSNFDSFLSFLELSALLSSLIVSFTVAVTAIWKKELYLAIGNRVAPWSLLFLVVGVLTGAVIRRRKWRETVLNGGVSVSEVEFLQRIEKLEEDLKSNATVVRVLSRQLEKLGIRFRVTRKGLKEPITEVLGGNDIGKQSIFETKYEVSRRKEHEAKTLRDVDPTAALAQKNSEAARALALQSDILEKELGEVQKVLLAMQEQQQKQLDLILAIAKAGKLWESKPETSEEHGTIDMSNSAANLNADYKALIINLSQFTSFLSFAVTKTDEYALVWYIL*